Multiple sequence alignment - TraesCS5B01G553400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G553400 chr5B 100.000 3754 0 0 1 3754 703503110 703499357 0.000000e+00 6933.0
1 TraesCS5B01G553400 chr5B 90.463 2139 133 30 370 2453 699392461 699390339 0.000000e+00 2754.0
2 TraesCS5B01G553400 chr5B 88.064 377 23 9 2455 2826 699390301 699389942 9.640000e-116 427.0
3 TraesCS5B01G553400 chr5B 71.380 1188 276 45 1058 2219 703330003 703331152 6.220000e-63 252.0
4 TraesCS5B01G553400 chr5B 80.058 346 55 9 1888 2229 699384581 699384916 1.040000e-60 244.0
5 TraesCS5B01G553400 chr5B 78.412 403 51 23 3154 3555 699387879 699387512 2.920000e-56 230.0
6 TraesCS5B01G553400 chr5B 78.348 351 70 5 1879 2229 685500301 685500645 4.880000e-54 222.0
7 TraesCS5B01G553400 chr5B 93.750 128 8 0 3581 3708 699387515 699387388 3.830000e-45 193.0
8 TraesCS5B01G553400 chr5B 80.541 185 30 5 1059 1240 703634134 703634315 1.820000e-28 137.0
9 TraesCS5B01G553400 chr5D 94.387 2334 112 9 764 3086 551086895 551084570 0.000000e+00 3567.0
10 TraesCS5B01G553400 chr5D 80.337 356 58 9 1870 2222 552457594 552457248 3.720000e-65 259.0
11 TraesCS5B01G553400 chr5D 79.940 334 50 13 1057 1383 552422772 552422449 2.920000e-56 230.0
12 TraesCS5B01G553400 chr5D 85.629 167 17 4 424 585 551087093 551086929 6.450000e-38 169.0
13 TraesCS5B01G553400 chr5D 80.645 217 33 7 1019 1229 552405538 552405325 3.880000e-35 159.0
14 TraesCS5B01G553400 chr5D 77.519 258 39 13 1131 1383 552352794 552352551 1.820000e-28 137.0
15 TraesCS5B01G553400 chr5D 78.977 176 35 2 1058 1232 551051768 551051942 6.590000e-23 119.0
16 TraesCS5B01G553400 chr4A 90.779 976 62 7 2121 3086 616866460 616867417 0.000000e+00 1279.0
17 TraesCS5B01G553400 chr4A 94.295 631 27 2 1496 2123 616865754 616866378 0.000000e+00 957.0
18 TraesCS5B01G553400 chr4A 93.218 634 26 4 769 1402 616865098 616865714 0.000000e+00 917.0
19 TraesCS5B01G553400 chr4A 88.376 585 27 18 3135 3708 616868005 616868559 0.000000e+00 665.0
20 TraesCS5B01G553400 chr4A 79.235 366 64 8 1886 2248 632940133 632940489 1.040000e-60 244.0
21 TraesCS5B01G553400 chr4A 78.779 344 67 5 1886 2229 616875964 616875627 3.770000e-55 226.0
22 TraesCS5B01G553400 chr4A 71.825 504 118 20 1058 1552 616903241 616902753 5.090000e-24 122.0
23 TraesCS5B01G553400 chr4A 97.727 44 1 0 3711 3754 616869297 616869340 4.020000e-10 76.8
24 TraesCS5B01G553400 chr4B 88.036 443 30 11 3124 3566 581070932 581071351 1.560000e-138 503.0
25 TraesCS5B01G553400 chr4B 83.690 374 58 3 1 372 4178625 4178997 2.150000e-92 350.0
26 TraesCS5B01G553400 chr3D 86.648 352 47 0 1 352 108914291 108914642 1.260000e-104 390.0
27 TraesCS5B01G553400 chr2D 84.656 378 51 6 1 372 573466406 573466782 1.650000e-98 370.0
28 TraesCS5B01G553400 chr7D 84.127 378 53 6 1 372 630193434 630193810 3.570000e-95 359.0
29 TraesCS5B01G553400 chr1B 84.384 365 54 2 1 365 442001228 442000867 4.610000e-94 355.0
30 TraesCS5B01G553400 chr1B 83.467 375 58 3 1 372 656985930 656986303 2.780000e-91 346.0
31 TraesCS5B01G553400 chr1B 81.176 340 49 9 1887 2223 115749791 115750118 3.720000e-65 259.0
32 TraesCS5B01G553400 chr1B 81.667 180 31 2 1053 1231 115748999 115749177 8.400000e-32 148.0
33 TraesCS5B01G553400 chr6B 83.690 374 54 5 1 372 672678912 672679280 2.780000e-91 346.0
34 TraesCS5B01G553400 chr6B 83.379 367 57 3 1 365 5342987 5342623 1.670000e-88 337.0
35 TraesCS5B01G553400 chr3B 82.796 372 57 5 3 372 794587348 794587714 3.620000e-85 326.0
36 TraesCS5B01G553400 chr7B 92.500 40 3 0 1340 1379 1251945 1251984 1.460000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G553400 chr5B 703499357 703503110 3753 True 6933.00 6933 100.00000 1 3754 1 chr5B.!!$R1 3753
1 TraesCS5B01G553400 chr5B 699387388 699392461 5073 True 901.00 2754 87.67225 370 3708 4 chr5B.!!$R2 3338
2 TraesCS5B01G553400 chr5B 703330003 703331152 1149 False 252.00 252 71.38000 1058 2219 1 chr5B.!!$F3 1161
3 TraesCS5B01G553400 chr5D 551084570 551087093 2523 True 1868.00 3567 90.00800 424 3086 2 chr5D.!!$R5 2662
4 TraesCS5B01G553400 chr4A 616865098 616869340 4242 False 778.96 1279 92.87900 769 3754 5 chr4A.!!$F2 2985
5 TraesCS5B01G553400 chr1B 115748999 115750118 1119 False 203.50 259 81.42150 1053 2223 2 chr1B.!!$F2 1170

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
252 253 0.035820 GCCACCGGGTTGATGAAGTA 60.036 55.0 6.32 0.00 36.17 2.24 F
657 664 0.109365 CAGAGAGAGACGTGGTGCAG 60.109 60.0 0.00 0.00 0.00 4.41 F
673 680 0.250338 GCAGGTGACGTTTCCTTCCT 60.250 55.0 9.29 0.26 30.91 3.36 F
1816 1947 0.535335 TCAAGTACGACATGGCCTCC 59.465 55.0 3.32 0.00 0.00 4.30 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1653 1781 0.397941 CAGGGTCCACTCAAGCTCAA 59.602 55.000 0.0 0.0 0.00 3.02 R
1905 2036 2.627791 GCAAACCCCAAATTGCCAC 58.372 52.632 0.0 0.0 44.72 5.01 R
2152 2370 3.196685 ACTTCTCGCTCTTCCATAGCTTT 59.803 43.478 0.0 0.0 37.85 3.51 R
3131 5544 0.188342 AGGGGTGCAGGTCAAACAAT 59.812 50.000 0.0 0.0 0.00 2.71 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 3.977244 CAGGGCCACCGTGCAAAC 61.977 66.667 6.18 0.00 43.47 2.93
62 63 2.124736 CGGGTGGCGTGGATTGAT 60.125 61.111 0.00 0.00 0.00 2.57
63 64 1.748879 CGGGTGGCGTGGATTGATT 60.749 57.895 0.00 0.00 0.00 2.57
64 65 1.809207 GGGTGGCGTGGATTGATTG 59.191 57.895 0.00 0.00 0.00 2.67
65 66 1.666209 GGGTGGCGTGGATTGATTGG 61.666 60.000 0.00 0.00 0.00 3.16
66 67 1.139520 GTGGCGTGGATTGATTGGC 59.860 57.895 0.00 0.00 0.00 4.52
67 68 2.405805 TGGCGTGGATTGATTGGCG 61.406 57.895 0.00 0.00 0.00 5.69
68 69 2.112198 GGCGTGGATTGATTGGCGA 61.112 57.895 0.00 0.00 0.00 5.54
69 70 1.353103 GCGTGGATTGATTGGCGAG 59.647 57.895 0.00 0.00 0.00 5.03
70 71 1.353103 CGTGGATTGATTGGCGAGC 59.647 57.895 0.00 0.00 0.00 5.03
71 72 1.729881 GTGGATTGATTGGCGAGCC 59.270 57.895 7.26 7.26 36.95 4.70
72 73 1.819208 TGGATTGATTGGCGAGCCG 60.819 57.895 9.78 0.00 39.45 5.52
73 74 1.523711 GGATTGATTGGCGAGCCGA 60.524 57.895 6.50 6.50 39.42 5.54
74 75 1.643832 GATTGATTGGCGAGCCGAC 59.356 57.895 6.14 2.39 39.42 4.79
75 76 2.094126 GATTGATTGGCGAGCCGACG 62.094 60.000 6.14 0.00 37.93 5.12
103 104 3.263941 GGCTATTATTGGCCGCCG 58.736 61.111 4.58 0.00 39.96 6.46
104 105 2.561373 GCTATTATTGGCCGCCGC 59.439 61.111 4.58 0.00 0.00 6.53
105 106 2.258013 GCTATTATTGGCCGCCGCA 61.258 57.895 4.58 0.00 36.38 5.69
106 107 1.586154 GCTATTATTGGCCGCCGCAT 61.586 55.000 4.58 1.88 36.38 4.73
107 108 0.168788 CTATTATTGGCCGCCGCATG 59.831 55.000 4.58 0.00 36.38 4.06
108 109 1.240641 TATTATTGGCCGCCGCATGG 61.241 55.000 4.58 0.00 36.38 3.66
129 130 4.814294 GAGGCCGCCGTGTGTAGG 62.814 72.222 3.05 0.00 0.00 3.18
135 136 3.564027 GCCGTGTGTAGGCGATGC 61.564 66.667 0.00 0.00 45.58 3.91
136 137 2.125713 CCGTGTGTAGGCGATGCA 60.126 61.111 0.00 0.00 0.00 3.96
137 138 2.167219 CCGTGTGTAGGCGATGCAG 61.167 63.158 0.00 0.00 0.00 4.41
138 139 2.167219 CGTGTGTAGGCGATGCAGG 61.167 63.158 0.00 0.00 0.00 4.85
139 140 1.079127 GTGTGTAGGCGATGCAGGT 60.079 57.895 0.00 0.00 0.00 4.00
140 141 1.079197 TGTGTAGGCGATGCAGGTG 60.079 57.895 0.00 0.00 0.00 4.00
141 142 1.079127 GTGTAGGCGATGCAGGTGT 60.079 57.895 0.00 0.00 0.00 4.16
142 143 1.084370 GTGTAGGCGATGCAGGTGTC 61.084 60.000 0.00 0.00 0.00 3.67
143 144 1.521681 GTAGGCGATGCAGGTGTCC 60.522 63.158 0.00 0.00 0.00 4.02
144 145 2.731571 TAGGCGATGCAGGTGTCCC 61.732 63.158 0.00 0.00 0.00 4.46
146 147 4.451150 GCGATGCAGGTGTCCCGA 62.451 66.667 0.00 0.00 35.12 5.14
147 148 2.501128 CGATGCAGGTGTCCCGAT 59.499 61.111 0.00 0.00 35.12 4.18
148 149 1.592669 CGATGCAGGTGTCCCGATC 60.593 63.158 0.00 0.00 35.12 3.69
149 150 1.522092 GATGCAGGTGTCCCGATCA 59.478 57.895 0.00 0.00 35.12 2.92
150 151 0.107703 GATGCAGGTGTCCCGATCAA 60.108 55.000 0.00 0.00 35.12 2.57
151 152 0.327924 ATGCAGGTGTCCCGATCAAA 59.672 50.000 0.00 0.00 35.12 2.69
152 153 0.321564 TGCAGGTGTCCCGATCAAAG 60.322 55.000 0.00 0.00 35.12 2.77
153 154 1.648467 GCAGGTGTCCCGATCAAAGC 61.648 60.000 0.00 0.00 35.12 3.51
154 155 0.321564 CAGGTGTCCCGATCAAAGCA 60.322 55.000 0.00 0.00 35.12 3.91
155 156 0.036010 AGGTGTCCCGATCAAAGCAG 60.036 55.000 0.00 0.00 35.12 4.24
156 157 1.026718 GGTGTCCCGATCAAAGCAGG 61.027 60.000 0.00 0.00 0.00 4.85
157 158 0.036388 GTGTCCCGATCAAAGCAGGA 60.036 55.000 0.00 0.00 0.00 3.86
158 159 0.911769 TGTCCCGATCAAAGCAGGAT 59.088 50.000 0.00 0.00 0.00 3.24
159 160 1.303309 GTCCCGATCAAAGCAGGATG 58.697 55.000 0.00 0.00 40.87 3.51
160 161 0.181114 TCCCGATCAAAGCAGGATGG 59.819 55.000 0.00 0.00 35.86 3.51
169 170 2.045926 GCAGGATGGTGACGGCTT 60.046 61.111 0.00 0.00 35.86 4.35
170 171 2.401766 GCAGGATGGTGACGGCTTG 61.402 63.158 0.00 0.00 35.86 4.01
171 172 2.045926 AGGATGGTGACGGCTTGC 60.046 61.111 0.00 0.00 0.00 4.01
172 173 3.499737 GGATGGTGACGGCTTGCG 61.500 66.667 0.00 0.00 0.00 4.85
173 174 4.166011 GATGGTGACGGCTTGCGC 62.166 66.667 0.00 0.00 0.00 6.09
215 216 4.573162 GGACGACGAACTTGAGGG 57.427 61.111 0.00 0.00 0.00 4.30
216 217 1.080025 GGACGACGAACTTGAGGGG 60.080 63.158 0.00 0.00 0.00 4.79
217 218 1.737008 GACGACGAACTTGAGGGGC 60.737 63.158 0.00 0.00 0.00 5.80
218 219 2.434359 CGACGAACTTGAGGGGCC 60.434 66.667 0.00 0.00 0.00 5.80
219 220 2.434359 GACGAACTTGAGGGGCCG 60.434 66.667 0.00 0.00 0.00 6.13
220 221 4.699522 ACGAACTTGAGGGGCCGC 62.700 66.667 12.88 12.88 0.00 6.53
222 223 4.035102 GAACTTGAGGGGCCGCCT 62.035 66.667 17.56 14.62 0.00 5.52
223 224 4.351054 AACTTGAGGGGCCGCCTG 62.351 66.667 17.56 6.79 0.00 4.85
225 226 4.785453 CTTGAGGGGCCGCCTGTC 62.785 72.222 17.56 8.44 0.00 3.51
246 247 4.096003 CGAGGCCACCGGGTTGAT 62.096 66.667 6.32 0.00 36.17 2.57
247 248 2.438434 GAGGCCACCGGGTTGATG 60.438 66.667 6.32 0.00 36.17 3.07
248 249 2.933287 AGGCCACCGGGTTGATGA 60.933 61.111 6.32 0.00 36.17 2.92
249 250 2.034999 GGCCACCGGGTTGATGAA 59.965 61.111 6.32 0.00 36.17 2.57
250 251 2.046285 GGCCACCGGGTTGATGAAG 61.046 63.158 6.32 0.00 36.17 3.02
251 252 1.303317 GCCACCGGGTTGATGAAGT 60.303 57.895 6.32 0.00 36.17 3.01
252 253 0.035820 GCCACCGGGTTGATGAAGTA 60.036 55.000 6.32 0.00 36.17 2.24
253 254 2.012051 GCCACCGGGTTGATGAAGTAG 61.012 57.143 6.32 0.00 36.17 2.57
254 255 1.369625 CACCGGGTTGATGAAGTAGC 58.630 55.000 6.32 0.00 0.00 3.58
255 256 0.252197 ACCGGGTTGATGAAGTAGCC 59.748 55.000 6.32 0.00 0.00 3.93
256 257 2.677971 CGGGTTGATGAAGTAGCCG 58.322 57.895 0.00 0.00 44.98 5.52
257 258 0.810031 CGGGTTGATGAAGTAGCCGG 60.810 60.000 0.00 0.00 46.12 6.13
258 259 1.095807 GGGTTGATGAAGTAGCCGGC 61.096 60.000 21.89 21.89 0.00 6.13
259 260 1.095807 GGTTGATGAAGTAGCCGGCC 61.096 60.000 26.15 9.10 0.00 6.13
260 261 1.153449 TTGATGAAGTAGCCGGCCG 60.153 57.895 26.15 21.04 0.00 6.13
261 262 2.280186 GATGAAGTAGCCGGCCGG 60.280 66.667 40.26 40.26 38.57 6.13
262 263 3.081409 ATGAAGTAGCCGGCCGGT 61.081 61.111 42.53 30.68 37.65 5.28
263 264 2.973180 GATGAAGTAGCCGGCCGGTC 62.973 65.000 42.53 33.30 37.65 4.79
264 265 4.867599 GAAGTAGCCGGCCGGTCG 62.868 72.222 42.53 24.43 37.65 4.79
274 275 3.788766 GCCGGTCGTGCATGTGTC 61.789 66.667 1.90 0.00 0.00 3.67
275 276 3.478394 CCGGTCGTGCATGTGTCG 61.478 66.667 5.68 8.32 0.00 4.35
276 277 2.430075 CGGTCGTGCATGTGTCGA 60.430 61.111 5.68 0.00 0.00 4.20
277 278 2.019408 CGGTCGTGCATGTGTCGAA 61.019 57.895 5.68 0.00 35.44 3.71
278 279 1.781555 GGTCGTGCATGTGTCGAAG 59.218 57.895 5.68 0.00 35.44 3.79
279 280 0.944311 GGTCGTGCATGTGTCGAAGT 60.944 55.000 5.68 0.00 35.44 3.01
280 281 1.667756 GGTCGTGCATGTGTCGAAGTA 60.668 52.381 5.68 0.00 35.44 2.24
281 282 1.649171 GTCGTGCATGTGTCGAAGTAG 59.351 52.381 5.68 0.00 35.44 2.57
282 283 1.538075 TCGTGCATGTGTCGAAGTAGA 59.462 47.619 5.68 0.00 0.00 2.59
283 284 1.914051 CGTGCATGTGTCGAAGTAGAG 59.086 52.381 0.00 0.00 0.00 2.43
284 285 2.263077 GTGCATGTGTCGAAGTAGAGG 58.737 52.381 0.00 0.00 0.00 3.69
285 286 1.281899 GCATGTGTCGAAGTAGAGGC 58.718 55.000 0.00 0.00 0.00 4.70
286 287 1.550065 CATGTGTCGAAGTAGAGGCG 58.450 55.000 0.00 0.00 0.00 5.52
287 288 1.135373 CATGTGTCGAAGTAGAGGCGT 60.135 52.381 0.00 0.00 0.00 5.68
288 289 0.520404 TGTGTCGAAGTAGAGGCGTC 59.480 55.000 0.00 0.00 0.00 5.19
289 290 0.520827 GTGTCGAAGTAGAGGCGTCG 60.521 60.000 0.00 0.00 40.64 5.12
290 291 1.062206 GTCGAAGTAGAGGCGTCGG 59.938 63.158 0.00 0.00 39.95 4.79
291 292 2.110967 TCGAAGTAGAGGCGTCGGG 61.111 63.158 0.00 0.00 39.95 5.14
292 293 2.404995 CGAAGTAGAGGCGTCGGGT 61.405 63.158 0.00 0.00 36.88 5.28
293 294 1.139095 GAAGTAGAGGCGTCGGGTG 59.861 63.158 0.00 0.00 0.00 4.61
294 295 1.593296 GAAGTAGAGGCGTCGGGTGT 61.593 60.000 0.00 0.00 0.00 4.16
295 296 1.593296 AAGTAGAGGCGTCGGGTGTC 61.593 60.000 0.00 0.00 0.00 3.67
296 297 3.129502 TAGAGGCGTCGGGTGTCG 61.130 66.667 0.00 0.00 40.90 4.35
318 319 2.358125 CGATGGCGGGTGACACAA 60.358 61.111 8.08 0.00 34.45 3.33
319 320 1.963855 CGATGGCGGGTGACACAAA 60.964 57.895 8.08 0.00 34.45 2.83
320 321 1.579429 GATGGCGGGTGACACAAAC 59.421 57.895 8.08 0.00 34.45 2.93
321 322 1.862602 GATGGCGGGTGACACAAACC 61.863 60.000 8.08 5.54 34.45 3.27
326 327 3.315765 GGGTGACACAAACCGATCA 57.684 52.632 8.08 0.00 38.70 2.92
327 328 1.600023 GGGTGACACAAACCGATCAA 58.400 50.000 8.08 0.00 38.70 2.57
328 329 1.535462 GGGTGACACAAACCGATCAAG 59.465 52.381 8.08 0.00 38.70 3.02
329 330 2.218603 GGTGACACAAACCGATCAAGT 58.781 47.619 8.08 0.00 0.00 3.16
330 331 3.395639 GGTGACACAAACCGATCAAGTA 58.604 45.455 8.08 0.00 0.00 2.24
331 332 3.185797 GGTGACACAAACCGATCAAGTAC 59.814 47.826 8.08 0.00 0.00 2.73
332 333 4.056050 GTGACACAAACCGATCAAGTACT 58.944 43.478 0.00 0.00 0.00 2.73
333 334 4.055360 TGACACAAACCGATCAAGTACTG 58.945 43.478 0.00 0.00 0.00 2.74
334 335 4.202172 TGACACAAACCGATCAAGTACTGA 60.202 41.667 0.00 0.00 38.81 3.41
347 348 6.928979 TCAAGTACTGATCGGAAAACAAAA 57.071 33.333 9.00 0.00 0.00 2.44
348 349 7.323049 TCAAGTACTGATCGGAAAACAAAAA 57.677 32.000 9.00 0.00 0.00 1.94
367 368 1.314730 AAAAACGTGCCGATCAAGGT 58.685 45.000 0.00 0.00 0.00 3.50
368 369 0.591170 AAAACGTGCCGATCAAGGTG 59.409 50.000 0.00 0.00 0.00 4.00
522 528 6.509039 GCGACGACGATCCTTATTGTTAAATT 60.509 38.462 12.29 0.00 42.66 1.82
523 529 7.396419 CGACGACGATCCTTATTGTTAAATTT 58.604 34.615 0.00 0.00 42.66 1.82
524 530 8.533965 CGACGACGATCCTTATTGTTAAATTTA 58.466 33.333 0.00 0.00 42.66 1.40
558 564 1.725641 GAACCAGCATGTGATCGACA 58.274 50.000 0.00 1.33 39.53 4.35
581 587 5.748630 CAGCACCATCAAATGAGAAATGATG 59.251 40.000 7.77 7.77 46.31 3.07
585 591 5.421056 ACCATCAAATGAGAAATGATGTGCT 59.579 36.000 12.42 0.00 45.66 4.40
586 592 6.604396 ACCATCAAATGAGAAATGATGTGCTA 59.396 34.615 12.42 0.00 45.66 3.49
587 593 7.123098 ACCATCAAATGAGAAATGATGTGCTAA 59.877 33.333 12.42 0.00 45.66 3.09
588 594 7.977293 CCATCAAATGAGAAATGATGTGCTAAA 59.023 33.333 12.42 0.00 45.66 1.85
655 662 0.109504 GTCAGAGAGAGACGTGGTGC 60.110 60.000 0.00 0.00 0.00 5.01
656 663 0.537371 TCAGAGAGAGACGTGGTGCA 60.537 55.000 0.00 0.00 0.00 4.57
657 664 0.109365 CAGAGAGAGACGTGGTGCAG 60.109 60.000 0.00 0.00 0.00 4.41
658 665 1.214062 GAGAGAGACGTGGTGCAGG 59.786 63.158 0.00 0.00 0.00 4.85
659 666 1.528292 GAGAGAGACGTGGTGCAGGT 61.528 60.000 0.00 0.00 35.09 4.00
660 667 1.373497 GAGAGACGTGGTGCAGGTG 60.373 63.158 0.00 0.00 32.46 4.00
661 668 1.806461 GAGAGACGTGGTGCAGGTGA 61.806 60.000 0.00 0.00 32.46 4.02
662 669 1.664965 GAGACGTGGTGCAGGTGAC 60.665 63.158 0.00 0.00 32.46 3.67
663 670 3.036084 GACGTGGTGCAGGTGACG 61.036 66.667 0.00 0.00 32.46 4.35
664 671 3.845259 ACGTGGTGCAGGTGACGT 61.845 61.111 6.56 6.56 40.09 4.34
665 672 2.587753 CGTGGTGCAGGTGACGTT 60.588 61.111 0.00 0.00 0.00 3.99
666 673 2.177580 CGTGGTGCAGGTGACGTTT 61.178 57.895 0.00 0.00 0.00 3.60
667 674 1.647084 GTGGTGCAGGTGACGTTTC 59.353 57.895 0.00 0.00 0.00 2.78
668 675 1.525077 TGGTGCAGGTGACGTTTCC 60.525 57.895 0.00 0.00 0.00 3.13
669 676 1.227853 GGTGCAGGTGACGTTTCCT 60.228 57.895 6.65 6.65 33.96 3.36
670 677 0.818040 GGTGCAGGTGACGTTTCCTT 60.818 55.000 9.29 0.00 30.91 3.36
671 678 0.586802 GTGCAGGTGACGTTTCCTTC 59.413 55.000 9.29 6.28 30.91 3.46
672 679 0.534203 TGCAGGTGACGTTTCCTTCC 60.534 55.000 9.29 5.49 30.91 3.46
673 680 0.250338 GCAGGTGACGTTTCCTTCCT 60.250 55.000 9.29 0.26 30.91 3.36
674 681 1.001633 GCAGGTGACGTTTCCTTCCTA 59.998 52.381 9.29 0.00 30.91 2.94
675 682 2.549349 GCAGGTGACGTTTCCTTCCTAA 60.549 50.000 9.29 0.00 30.91 2.69
676 683 3.868754 GCAGGTGACGTTTCCTTCCTAAT 60.869 47.826 9.29 0.00 30.91 1.73
677 684 3.933332 CAGGTGACGTTTCCTTCCTAATC 59.067 47.826 9.29 0.00 30.91 1.75
678 685 2.928116 GGTGACGTTTCCTTCCTAATCG 59.072 50.000 0.00 0.00 0.00 3.34
679 686 3.582780 GTGACGTTTCCTTCCTAATCGT 58.417 45.455 0.00 0.00 35.58 3.73
680 687 3.611549 GTGACGTTTCCTTCCTAATCGTC 59.388 47.826 10.77 10.77 43.90 4.20
681 688 3.508793 TGACGTTTCCTTCCTAATCGTCT 59.491 43.478 15.95 0.00 43.94 4.18
682 689 3.846360 ACGTTTCCTTCCTAATCGTCTG 58.154 45.455 0.00 0.00 28.91 3.51
735 742 9.823647 TTTCTTCCTAATCTAATCTGCACTTAG 57.176 33.333 5.34 5.34 0.00 2.18
736 743 7.957002 TCTTCCTAATCTAATCTGCACTTAGG 58.043 38.462 10.09 0.00 37.58 2.69
737 744 7.565398 TCTTCCTAATCTAATCTGCACTTAGGT 59.435 37.037 10.09 2.44 37.53 3.08
738 745 7.676683 TCCTAATCTAATCTGCACTTAGGTT 57.323 36.000 12.24 12.24 37.53 3.50
739 746 8.090788 TCCTAATCTAATCTGCACTTAGGTTT 57.909 34.615 12.65 8.96 37.53 3.27
740 747 8.204836 TCCTAATCTAATCTGCACTTAGGTTTC 58.795 37.037 12.65 0.00 37.53 2.78
742 749 9.255304 CTAATCTAATCTGCACTTAGGTTTCTC 57.745 37.037 12.65 0.00 32.97 2.87
750 790 1.272807 CTTAGGTTTCTCCCCCGTCA 58.727 55.000 0.00 0.00 36.75 4.35
1015 1071 0.768622 CCTACCCTCCACCAACAACA 59.231 55.000 0.00 0.00 0.00 3.33
1271 1327 1.517832 CCCAGCGACGAAGGAGAAT 59.482 57.895 0.00 0.00 0.00 2.40
1329 1385 2.890474 GCGCATTCCCGATGTCGT 60.890 61.111 0.30 0.00 38.07 4.34
1444 1515 4.457496 ATGACGGGCTGCACGAGG 62.457 66.667 32.91 1.78 34.93 4.63
1455 1526 0.965866 TGCACGAGGTACCTGGAGAG 60.966 60.000 28.59 18.01 0.00 3.20
1474 1545 2.429058 CCCGATGGATGCTGGAGG 59.571 66.667 0.00 0.00 0.00 4.30
1504 1578 1.748403 GGTGGTCTGTGCTGTGAGA 59.252 57.895 0.00 0.00 0.00 3.27
1648 1776 3.953612 ACGAGAGCTCTGATCTTGATCTT 59.046 43.478 23.91 0.00 33.18 2.40
1649 1777 4.202040 ACGAGAGCTCTGATCTTGATCTTG 60.202 45.833 23.91 0.00 34.75 3.02
1650 1778 4.036616 CGAGAGCTCTGATCTTGATCTTGA 59.963 45.833 23.91 8.67 31.40 3.02
1651 1779 5.524971 AGAGCTCTGATCTTGATCTTGAG 57.475 43.478 17.42 19.36 0.00 3.02
1652 1780 4.053295 GAGCTCTGATCTTGATCTTGAGC 58.947 47.826 28.84 28.84 42.31 4.26
1653 1781 3.707611 AGCTCTGATCTTGATCTTGAGCT 59.292 43.478 30.75 30.75 44.53 4.09
1701 1829 2.413453 GTCTTGAACTTGAAGCTAGGCG 59.587 50.000 0.00 0.00 0.00 5.52
1755 1883 4.096532 CCTCATCAAAGACGCACTCTACTA 59.903 45.833 0.00 0.00 0.00 1.82
1816 1947 0.535335 TCAAGTACGACATGGCCTCC 59.465 55.000 3.32 0.00 0.00 4.30
1964 2095 2.437281 CTCAACCTATGGTCAGGCTCAT 59.563 50.000 0.00 0.00 39.53 2.90
2050 2184 5.074239 CCTTCTCCCTATTCAGAATCCCAAT 59.926 44.000 0.00 0.00 0.00 3.16
2152 2370 2.978978 TCTCAAGTCCCTCATGTGGAAA 59.021 45.455 15.47 0.25 32.59 3.13
2292 2511 2.062636 AGCCCTCTGTCCCAAAGTAAA 58.937 47.619 0.00 0.00 0.00 2.01
2298 2517 4.315803 CTCTGTCCCAAAGTAAATGTCGT 58.684 43.478 0.00 0.00 0.00 4.34
2299 2518 4.062293 TCTGTCCCAAAGTAAATGTCGTG 58.938 43.478 0.00 0.00 0.00 4.35
2419 2657 8.712285 AAAACTTTGAGCGCTATGTACTATAA 57.288 30.769 11.50 0.00 0.00 0.98
2449 2687 6.717289 TGTTACACCTGGTTATTCTTATGCT 58.283 36.000 0.00 0.00 0.00 3.79
2450 2688 7.853299 TGTTACACCTGGTTATTCTTATGCTA 58.147 34.615 0.00 0.00 0.00 3.49
2451 2689 7.767198 TGTTACACCTGGTTATTCTTATGCTAC 59.233 37.037 0.00 0.00 0.00 3.58
2504 2780 4.570926 AGGATCAACCCCTATGATGAAGA 58.429 43.478 0.00 0.00 37.64 2.87
2604 2880 2.337583 CAACGTGGTCTCGTGATGAAT 58.662 47.619 0.00 0.00 43.38 2.57
2637 2914 0.602562 TAGCTGGTTTGGTGCAATGC 59.397 50.000 0.00 0.00 0.00 3.56
2698 2975 6.095720 CCAGCTTAATAATTCCCGGTGTTAAA 59.904 38.462 0.00 0.00 0.00 1.52
2701 2978 7.558444 AGCTTAATAATTCCCGGTGTTAAATGA 59.442 33.333 0.00 0.00 0.00 2.57
2707 2984 1.815613 CCCGGTGTTAAATGACATGCA 59.184 47.619 0.00 0.00 0.00 3.96
2708 2985 2.415357 CCCGGTGTTAAATGACATGCAC 60.415 50.000 0.00 0.00 0.00 4.57
2793 3073 3.372206 CAGAGCCAACCGACTTTAATCTG 59.628 47.826 0.00 0.00 0.00 2.90
2879 3479 1.301637 GCATTTGGTTTGCCGCCTT 60.302 52.632 0.00 0.00 37.67 4.35
2896 3496 4.759693 CCGCCTTTTCATGCCTACATATTA 59.240 41.667 0.00 0.00 33.67 0.98
3016 3764 2.456000 ACGAAAGTTGCGCGATCAT 58.544 47.368 12.10 0.00 46.40 2.45
3093 5506 1.890489 TCTGACGCTAAACAGCCAGTA 59.110 47.619 0.00 0.00 34.57 2.74
3104 5517 4.682778 AACAGCCAGTACAGACAAAGTA 57.317 40.909 0.00 0.00 0.00 2.24
3107 5520 5.621193 ACAGCCAGTACAGACAAAGTATTT 58.379 37.500 0.00 0.00 40.26 1.40
3162 5575 2.529389 ACCCCTGAACGGAGGCTT 60.529 61.111 0.00 0.00 33.16 4.35
3232 5645 7.833682 TCTTTTGCATCATGGGATTAAGAGTTA 59.166 33.333 0.00 0.00 0.00 2.24
3235 5648 5.532406 TGCATCATGGGATTAAGAGTTAAGC 59.468 40.000 0.00 0.00 0.00 3.09
3236 5649 5.767168 GCATCATGGGATTAAGAGTTAAGCT 59.233 40.000 0.00 0.00 32.40 3.74
3237 5650 6.293845 GCATCATGGGATTAAGAGTTAAGCTG 60.294 42.308 0.00 0.00 32.40 4.24
3238 5651 6.560003 TCATGGGATTAAGAGTTAAGCTGA 57.440 37.500 0.00 0.00 32.40 4.26
3239 5652 7.141758 TCATGGGATTAAGAGTTAAGCTGAT 57.858 36.000 0.00 0.00 32.40 2.90
3244 5657 6.017523 GGGATTAAGAGTTAAGCTGATTCTGC 60.018 42.308 7.40 7.40 32.40 4.26
3247 5660 5.814764 AAGAGTTAAGCTGATTCTGCATG 57.185 39.130 16.56 0.00 0.00 4.06
3248 5661 5.095145 AGAGTTAAGCTGATTCTGCATGA 57.905 39.130 16.56 0.23 0.00 3.07
3249 5662 5.682659 AGAGTTAAGCTGATTCTGCATGAT 58.317 37.500 16.56 4.03 0.00 2.45
3250 5663 6.120905 AGAGTTAAGCTGATTCTGCATGATT 58.879 36.000 16.56 5.83 0.00 2.57
3251 5664 7.278135 AGAGTTAAGCTGATTCTGCATGATTA 58.722 34.615 16.56 4.98 0.00 1.75
3252 5665 7.441760 AGAGTTAAGCTGATTCTGCATGATTAG 59.558 37.037 16.56 0.00 0.00 1.73
3253 5666 6.485984 AGTTAAGCTGATTCTGCATGATTAGG 59.514 38.462 16.56 0.00 0.00 2.69
3254 5667 3.752665 AGCTGATTCTGCATGATTAGGG 58.247 45.455 16.56 0.00 0.00 3.53
3255 5668 2.818432 GCTGATTCTGCATGATTAGGGG 59.182 50.000 10.32 0.00 0.00 4.79
3256 5669 3.418995 CTGATTCTGCATGATTAGGGGG 58.581 50.000 0.00 0.00 0.00 5.40
3257 5670 3.055328 TGATTCTGCATGATTAGGGGGA 58.945 45.455 0.00 0.00 0.00 4.81
3258 5671 3.462954 TGATTCTGCATGATTAGGGGGAA 59.537 43.478 0.00 0.00 0.00 3.97
3259 5672 4.079269 TGATTCTGCATGATTAGGGGGAAA 60.079 41.667 0.00 0.00 0.00 3.13
3260 5673 3.582998 TCTGCATGATTAGGGGGAAAG 57.417 47.619 0.00 0.00 0.00 2.62
3261 5674 1.959282 CTGCATGATTAGGGGGAAAGC 59.041 52.381 0.00 0.00 0.00 3.51
3262 5675 1.287442 TGCATGATTAGGGGGAAAGCA 59.713 47.619 0.00 0.00 0.00 3.91
3263 5676 2.091166 TGCATGATTAGGGGGAAAGCAT 60.091 45.455 0.00 0.00 33.44 3.79
3264 5677 2.967887 GCATGATTAGGGGGAAAGCATT 59.032 45.455 0.00 0.00 30.92 3.56
3265 5678 3.389002 GCATGATTAGGGGGAAAGCATTT 59.611 43.478 0.00 0.00 43.98 2.32
3266 5679 4.588528 GCATGATTAGGGGGAAAGCATTTA 59.411 41.667 0.00 0.00 39.27 1.40
3376 5789 2.486472 ACCCTTGCAATCTCTGACAG 57.514 50.000 0.00 0.00 0.00 3.51
3386 5799 8.975410 TTGCAATCTCTGACAGAAAAATAATG 57.025 30.769 6.61 1.05 33.62 1.90
3416 5829 5.441718 TCATTTGAACATAAGGAGGAGCT 57.558 39.130 0.00 0.00 0.00 4.09
3418 5831 6.586344 TCATTTGAACATAAGGAGGAGCTAG 58.414 40.000 0.00 0.00 0.00 3.42
3419 5832 5.359194 TTTGAACATAAGGAGGAGCTAGG 57.641 43.478 0.00 0.00 0.00 3.02
3420 5833 3.309296 TGAACATAAGGAGGAGCTAGGG 58.691 50.000 0.00 0.00 0.00 3.53
3421 5834 1.723288 ACATAAGGAGGAGCTAGGGC 58.277 55.000 0.00 0.00 39.06 5.19
3422 5835 0.605589 CATAAGGAGGAGCTAGGGCG 59.394 60.000 0.00 0.00 44.37 6.13
3423 5836 1.188871 ATAAGGAGGAGCTAGGGCGC 61.189 60.000 0.00 0.00 44.37 6.53
3429 5842 3.737824 GAGCTAGGGCGCCATTTC 58.262 61.111 30.85 16.37 44.37 2.17
3529 5943 0.532417 CTGCATAGCCCTGTGAGCTC 60.532 60.000 6.82 6.82 41.83 4.09
3550 5967 5.335740 GCTCAAGTGCACTAGTACAGTAAGA 60.336 44.000 22.01 9.95 34.98 2.10
3565 5982 5.289510 ACAGTAAGAAGAGGGGGATACAAT 58.710 41.667 0.00 0.00 39.74 2.71
3584 6001 2.497107 TGCACAGCTTTTCAAAGAGC 57.503 45.000 3.35 0.00 38.28 4.09
3667 6090 3.752665 TCCTCGATCGTTATAAGCCTCT 58.247 45.455 15.94 0.00 0.00 3.69
3708 6131 2.676748 TCAAATTTCCCACTGCCTTGT 58.323 42.857 0.00 0.00 0.00 3.16
3709 6132 3.037549 TCAAATTTCCCACTGCCTTGTT 58.962 40.909 0.00 0.00 0.00 2.83
3725 6883 8.739972 ACTGCCTTGTTAAATGGTAAGAATAAG 58.260 33.333 0.00 0.00 0.00 1.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.977244 GTTTGCACGGTGGCCCTG 61.977 66.667 10.60 0.00 0.00 4.45
45 46 1.748879 AATCAATCCACGCCACCCG 60.749 57.895 0.00 0.00 44.21 5.28
46 47 1.666209 CCAATCAATCCACGCCACCC 61.666 60.000 0.00 0.00 0.00 4.61
47 48 1.809207 CCAATCAATCCACGCCACC 59.191 57.895 0.00 0.00 0.00 4.61
48 49 1.139520 GCCAATCAATCCACGCCAC 59.860 57.895 0.00 0.00 0.00 5.01
49 50 2.405805 CGCCAATCAATCCACGCCA 61.406 57.895 0.00 0.00 0.00 5.69
50 51 2.051804 CTCGCCAATCAATCCACGCC 62.052 60.000 0.00 0.00 0.00 5.68
51 52 1.353103 CTCGCCAATCAATCCACGC 59.647 57.895 0.00 0.00 0.00 5.34
52 53 1.353103 GCTCGCCAATCAATCCACG 59.647 57.895 0.00 0.00 0.00 4.94
53 54 1.729881 GGCTCGCCAATCAATCCAC 59.270 57.895 2.41 0.00 35.81 4.02
54 55 1.819208 CGGCTCGCCAATCAATCCA 60.819 57.895 8.87 0.00 35.37 3.41
55 56 1.523711 TCGGCTCGCCAATCAATCC 60.524 57.895 8.87 0.00 35.37 3.01
56 57 1.643832 GTCGGCTCGCCAATCAATC 59.356 57.895 8.87 0.00 35.37 2.67
57 58 2.173669 CGTCGGCTCGCCAATCAAT 61.174 57.895 8.87 0.00 35.37 2.57
58 59 2.813474 CGTCGGCTCGCCAATCAA 60.813 61.111 8.87 0.00 35.37 2.57
86 87 2.978018 GCGGCGGCCAATAATAGCC 61.978 63.158 20.71 4.23 46.17 3.93
87 88 1.586154 ATGCGGCGGCCAATAATAGC 61.586 55.000 20.71 12.63 38.85 2.97
88 89 0.168788 CATGCGGCGGCCAATAATAG 59.831 55.000 20.71 1.26 38.85 1.73
89 90 1.240641 CCATGCGGCGGCCAATAATA 61.241 55.000 20.71 0.00 38.85 0.98
90 91 2.563798 CCATGCGGCGGCCAATAAT 61.564 57.895 20.71 3.36 38.85 1.28
91 92 3.215568 CCATGCGGCGGCCAATAA 61.216 61.111 20.71 0.76 38.85 1.40
112 113 4.814294 CCTACACACGGCGGCCTC 62.814 72.222 18.34 0.00 0.00 4.70
118 119 3.564027 GCATCGCCTACACACGGC 61.564 66.667 0.00 0.00 44.11 5.68
119 120 2.125713 TGCATCGCCTACACACGG 60.126 61.111 0.00 0.00 0.00 4.94
120 121 2.167219 CCTGCATCGCCTACACACG 61.167 63.158 0.00 0.00 0.00 4.49
121 122 1.079127 ACCTGCATCGCCTACACAC 60.079 57.895 0.00 0.00 0.00 3.82
122 123 1.079197 CACCTGCATCGCCTACACA 60.079 57.895 0.00 0.00 0.00 3.72
123 124 1.079127 ACACCTGCATCGCCTACAC 60.079 57.895 0.00 0.00 0.00 2.90
124 125 1.218047 GACACCTGCATCGCCTACA 59.782 57.895 0.00 0.00 0.00 2.74
125 126 1.521681 GGACACCTGCATCGCCTAC 60.522 63.158 0.00 0.00 0.00 3.18
126 127 2.731571 GGGACACCTGCATCGCCTA 61.732 63.158 0.00 0.00 0.00 3.93
127 128 4.101448 GGGACACCTGCATCGCCT 62.101 66.667 0.00 0.00 0.00 5.52
129 130 3.740128 ATCGGGACACCTGCATCGC 62.740 63.158 0.00 0.00 33.28 4.58
130 131 1.592669 GATCGGGACACCTGCATCG 60.593 63.158 0.00 0.00 33.28 3.84
131 132 0.107703 TTGATCGGGACACCTGCATC 60.108 55.000 0.00 0.00 33.28 3.91
132 133 0.327924 TTTGATCGGGACACCTGCAT 59.672 50.000 0.00 0.00 33.28 3.96
133 134 0.321564 CTTTGATCGGGACACCTGCA 60.322 55.000 0.00 0.00 33.28 4.41
134 135 1.648467 GCTTTGATCGGGACACCTGC 61.648 60.000 0.00 0.00 33.28 4.85
135 136 0.321564 TGCTTTGATCGGGACACCTG 60.322 55.000 0.00 0.00 33.28 4.00
136 137 0.036010 CTGCTTTGATCGGGACACCT 60.036 55.000 0.00 0.00 33.28 4.00
137 138 1.026718 CCTGCTTTGATCGGGACACC 61.027 60.000 0.00 0.00 31.56 4.16
138 139 0.036388 TCCTGCTTTGATCGGGACAC 60.036 55.000 0.00 0.00 34.22 3.67
139 140 0.911769 ATCCTGCTTTGATCGGGACA 59.088 50.000 0.00 0.00 41.43 4.02
140 141 1.303309 CATCCTGCTTTGATCGGGAC 58.697 55.000 0.00 0.00 41.43 4.46
141 142 0.181114 CCATCCTGCTTTGATCGGGA 59.819 55.000 0.00 0.00 42.68 5.14
142 143 0.107017 ACCATCCTGCTTTGATCGGG 60.107 55.000 0.00 0.00 0.00 5.14
143 144 1.019673 CACCATCCTGCTTTGATCGG 58.980 55.000 0.00 0.00 0.00 4.18
144 145 1.667724 GTCACCATCCTGCTTTGATCG 59.332 52.381 0.00 0.00 0.00 3.69
145 146 1.667724 CGTCACCATCCTGCTTTGATC 59.332 52.381 0.00 0.00 0.00 2.92
146 147 1.679944 CCGTCACCATCCTGCTTTGAT 60.680 52.381 0.00 0.00 0.00 2.57
147 148 0.321564 CCGTCACCATCCTGCTTTGA 60.322 55.000 0.00 0.00 0.00 2.69
148 149 1.926511 GCCGTCACCATCCTGCTTTG 61.927 60.000 0.00 0.00 0.00 2.77
149 150 1.675641 GCCGTCACCATCCTGCTTT 60.676 57.895 0.00 0.00 0.00 3.51
150 151 2.045926 GCCGTCACCATCCTGCTT 60.046 61.111 0.00 0.00 0.00 3.91
151 152 2.596851 AAGCCGTCACCATCCTGCT 61.597 57.895 0.00 0.00 0.00 4.24
152 153 2.045926 AAGCCGTCACCATCCTGC 60.046 61.111 0.00 0.00 0.00 4.85
153 154 2.401766 GCAAGCCGTCACCATCCTG 61.402 63.158 0.00 0.00 0.00 3.86
154 155 2.045926 GCAAGCCGTCACCATCCT 60.046 61.111 0.00 0.00 0.00 3.24
155 156 3.499737 CGCAAGCCGTCACCATCC 61.500 66.667 0.00 0.00 0.00 3.51
194 195 4.117372 CAAGTTCGTCGTCCGCGC 62.117 66.667 0.00 0.00 38.14 6.86
195 196 2.426183 CTCAAGTTCGTCGTCCGCG 61.426 63.158 0.00 0.00 39.92 6.46
196 197 2.087009 CCTCAAGTTCGTCGTCCGC 61.087 63.158 0.00 0.00 36.19 5.54
197 198 1.443872 CCCTCAAGTTCGTCGTCCG 60.444 63.158 0.00 0.00 38.13 4.79
198 199 1.080025 CCCCTCAAGTTCGTCGTCC 60.080 63.158 0.00 0.00 0.00 4.79
199 200 1.737008 GCCCCTCAAGTTCGTCGTC 60.737 63.158 0.00 0.00 0.00 4.20
200 201 2.342648 GCCCCTCAAGTTCGTCGT 59.657 61.111 0.00 0.00 0.00 4.34
201 202 2.434359 GGCCCCTCAAGTTCGTCG 60.434 66.667 0.00 0.00 0.00 5.12
202 203 2.434359 CGGCCCCTCAAGTTCGTC 60.434 66.667 0.00 0.00 0.00 4.20
203 204 4.699522 GCGGCCCCTCAAGTTCGT 62.700 66.667 0.00 0.00 0.00 3.85
205 206 4.035102 AGGCGGCCCCTCAAGTTC 62.035 66.667 17.02 0.00 41.21 3.01
206 207 4.351054 CAGGCGGCCCCTCAAGTT 62.351 66.667 17.02 0.00 44.09 2.66
208 209 4.785453 GACAGGCGGCCCCTCAAG 62.785 72.222 17.02 1.52 44.09 3.02
229 230 4.096003 ATCAACCCGGTGGCCTCG 62.096 66.667 3.32 8.30 33.59 4.63
230 231 2.438434 CATCAACCCGGTGGCCTC 60.438 66.667 3.32 0.00 33.59 4.70
231 232 2.484287 CTTCATCAACCCGGTGGCCT 62.484 60.000 3.32 0.00 33.59 5.19
232 233 2.034999 TTCATCAACCCGGTGGCC 59.965 61.111 0.00 0.00 33.59 5.36
233 234 0.035820 TACTTCATCAACCCGGTGGC 60.036 55.000 0.00 0.00 33.59 5.01
234 235 2.012051 GCTACTTCATCAACCCGGTGG 61.012 57.143 0.00 0.00 37.80 4.61
235 236 1.369625 GCTACTTCATCAACCCGGTG 58.630 55.000 0.00 0.00 0.00 4.94
236 237 0.252197 GGCTACTTCATCAACCCGGT 59.748 55.000 0.00 0.00 0.00 5.28
237 238 0.810031 CGGCTACTTCATCAACCCGG 60.810 60.000 0.00 0.00 0.00 5.73
238 239 0.810031 CCGGCTACTTCATCAACCCG 60.810 60.000 0.00 0.00 0.00 5.28
239 240 1.095807 GCCGGCTACTTCATCAACCC 61.096 60.000 22.15 0.00 0.00 4.11
240 241 1.095807 GGCCGGCTACTTCATCAACC 61.096 60.000 28.56 0.00 0.00 3.77
241 242 1.429148 CGGCCGGCTACTTCATCAAC 61.429 60.000 28.56 3.31 0.00 3.18
242 243 1.153449 CGGCCGGCTACTTCATCAA 60.153 57.895 28.56 0.00 0.00 2.57
243 244 2.499205 CGGCCGGCTACTTCATCA 59.501 61.111 28.56 0.00 0.00 3.07
244 245 2.280186 CCGGCCGGCTACTTCATC 60.280 66.667 34.96 5.59 0.00 2.92
245 246 3.081409 ACCGGCCGGCTACTTCAT 61.081 61.111 43.58 19.78 39.32 2.57
246 247 3.766691 GACCGGCCGGCTACTTCA 61.767 66.667 43.58 0.00 39.32 3.02
247 248 4.867599 CGACCGGCCGGCTACTTC 62.868 72.222 43.58 30.34 39.32 3.01
257 258 3.788766 GACACATGCACGACCGGC 61.789 66.667 0.00 0.00 0.00 6.13
258 259 3.478394 CGACACATGCACGACCGG 61.478 66.667 0.00 0.00 0.00 5.28
259 260 1.944699 CTTCGACACATGCACGACCG 61.945 60.000 8.54 0.00 35.82 4.79
260 261 0.944311 ACTTCGACACATGCACGACC 60.944 55.000 8.54 0.00 35.82 4.79
261 262 1.649171 CTACTTCGACACATGCACGAC 59.351 52.381 8.54 0.00 35.82 4.34
262 263 1.538075 TCTACTTCGACACATGCACGA 59.462 47.619 0.00 0.00 0.00 4.35
263 264 1.914051 CTCTACTTCGACACATGCACG 59.086 52.381 0.00 0.00 0.00 5.34
264 265 2.263077 CCTCTACTTCGACACATGCAC 58.737 52.381 0.00 0.00 0.00 4.57
265 266 1.404181 GCCTCTACTTCGACACATGCA 60.404 52.381 0.00 0.00 0.00 3.96
266 267 1.281899 GCCTCTACTTCGACACATGC 58.718 55.000 0.00 0.00 0.00 4.06
267 268 1.135373 ACGCCTCTACTTCGACACATG 60.135 52.381 0.00 0.00 0.00 3.21
268 269 1.132643 GACGCCTCTACTTCGACACAT 59.867 52.381 0.00 0.00 0.00 3.21
269 270 0.520404 GACGCCTCTACTTCGACACA 59.480 55.000 0.00 0.00 0.00 3.72
270 271 0.520827 CGACGCCTCTACTTCGACAC 60.521 60.000 0.00 0.00 33.55 3.67
271 272 1.642037 CCGACGCCTCTACTTCGACA 61.642 60.000 0.00 0.00 33.55 4.35
272 273 1.062206 CCGACGCCTCTACTTCGAC 59.938 63.158 0.00 0.00 33.55 4.20
273 274 2.110967 CCCGACGCCTCTACTTCGA 61.111 63.158 0.00 0.00 33.55 3.71
274 275 2.404995 ACCCGACGCCTCTACTTCG 61.405 63.158 0.00 0.00 0.00 3.79
275 276 1.139095 CACCCGACGCCTCTACTTC 59.861 63.158 0.00 0.00 0.00 3.01
276 277 1.593296 GACACCCGACGCCTCTACTT 61.593 60.000 0.00 0.00 0.00 2.24
277 278 2.035312 ACACCCGACGCCTCTACT 59.965 61.111 0.00 0.00 0.00 2.57
278 279 2.488820 GACACCCGACGCCTCTAC 59.511 66.667 0.00 0.00 0.00 2.59
279 280 3.129502 CGACACCCGACGCCTCTA 61.130 66.667 0.00 0.00 41.76 2.43
301 302 1.963855 TTTGTGTCACCCGCCATCG 60.964 57.895 0.00 0.00 0.00 3.84
302 303 1.579429 GTTTGTGTCACCCGCCATC 59.421 57.895 0.00 0.00 0.00 3.51
303 304 1.901464 GGTTTGTGTCACCCGCCAT 60.901 57.895 0.00 0.00 0.00 4.40
304 305 2.517402 GGTTTGTGTCACCCGCCA 60.517 61.111 0.00 0.00 0.00 5.69
305 306 3.656045 CGGTTTGTGTCACCCGCC 61.656 66.667 6.27 2.32 33.20 6.13
306 307 1.908066 GATCGGTTTGTGTCACCCGC 61.908 60.000 12.69 0.00 40.23 6.13
307 308 0.601576 TGATCGGTTTGTGTCACCCG 60.602 55.000 11.62 11.62 41.75 5.28
308 309 1.535462 CTTGATCGGTTTGTGTCACCC 59.465 52.381 0.00 0.00 0.00 4.61
309 310 2.218603 ACTTGATCGGTTTGTGTCACC 58.781 47.619 0.00 0.00 0.00 4.02
310 311 4.056050 AGTACTTGATCGGTTTGTGTCAC 58.944 43.478 0.00 0.00 0.00 3.67
311 312 4.055360 CAGTACTTGATCGGTTTGTGTCA 58.945 43.478 0.00 0.00 0.00 3.58
312 313 4.304110 TCAGTACTTGATCGGTTTGTGTC 58.696 43.478 0.00 0.00 0.00 3.67
313 314 4.330944 TCAGTACTTGATCGGTTTGTGT 57.669 40.909 0.00 0.00 0.00 3.72
324 325 6.928979 TTTTGTTTTCCGATCAGTACTTGA 57.071 33.333 0.00 0.00 40.85 3.02
354 355 0.741221 GAGGTCACCTTGATCGGCAC 60.741 60.000 0.00 0.00 31.44 5.01
355 356 1.596934 GAGGTCACCTTGATCGGCA 59.403 57.895 0.00 0.00 31.44 5.69
356 357 1.153349 GGAGGTCACCTTGATCGGC 60.153 63.158 0.00 0.00 31.44 5.54
357 358 0.176680 CTGGAGGTCACCTTGATCGG 59.823 60.000 0.00 0.00 31.44 4.18
358 359 0.460987 GCTGGAGGTCACCTTGATCG 60.461 60.000 0.00 0.00 31.44 3.69
359 360 0.908198 AGCTGGAGGTCACCTTGATC 59.092 55.000 0.00 0.00 31.76 2.92
360 361 2.114616 CTAGCTGGAGGTCACCTTGAT 58.885 52.381 0.00 0.00 31.76 2.57
361 362 1.561643 CTAGCTGGAGGTCACCTTGA 58.438 55.000 0.00 0.00 31.76 3.02
362 363 0.107945 GCTAGCTGGAGGTCACCTTG 60.108 60.000 7.70 0.00 31.76 3.61
363 364 1.608717 CGCTAGCTGGAGGTCACCTT 61.609 60.000 13.93 0.00 31.76 3.50
364 365 2.055042 CGCTAGCTGGAGGTCACCT 61.055 63.158 13.93 0.00 36.03 4.00
365 366 2.010582 CTCGCTAGCTGGAGGTCACC 62.011 65.000 13.93 0.00 0.00 4.02
366 367 1.435515 CTCGCTAGCTGGAGGTCAC 59.564 63.158 13.93 0.00 0.00 3.67
367 368 2.418910 GCTCGCTAGCTGGAGGTCA 61.419 63.158 17.90 0.00 45.85 4.02
368 369 2.415426 GCTCGCTAGCTGGAGGTC 59.585 66.667 17.90 2.71 45.85 3.85
393 394 2.583593 GCGCTGGATCAGACGGAC 60.584 66.667 0.00 0.00 33.90 4.79
541 547 0.742281 GCTGTCGATCACATGCTGGT 60.742 55.000 0.00 0.00 33.23 4.00
558 564 5.902681 CATCATTTCTCATTTGATGGTGCT 58.097 37.500 4.59 0.00 41.84 4.40
581 587 9.788960 CTCCCAAATAAAAATAGACTTTAGCAC 57.211 33.333 0.00 0.00 0.00 4.40
585 591 8.671028 GCGTCTCCCAAATAAAAATAGACTTTA 58.329 33.333 0.00 0.00 31.81 1.85
586 592 7.535997 GCGTCTCCCAAATAAAAATAGACTTT 58.464 34.615 0.00 0.00 31.81 2.66
587 593 6.183360 CGCGTCTCCCAAATAAAAATAGACTT 60.183 38.462 0.00 0.00 31.81 3.01
588 594 5.293569 CGCGTCTCCCAAATAAAAATAGACT 59.706 40.000 0.00 0.00 31.81 3.24
620 627 3.340928 TCTGACTGAGCCAATGACAATG 58.659 45.455 0.00 0.00 0.00 2.82
655 662 3.396260 TTAGGAAGGAAACGTCACCTG 57.604 47.619 13.02 0.00 40.97 4.00
656 663 3.368116 CGATTAGGAAGGAAACGTCACCT 60.368 47.826 7.54 7.54 40.97 4.00
657 664 2.928116 CGATTAGGAAGGAAACGTCACC 59.072 50.000 0.00 0.00 40.97 4.02
658 665 3.582780 ACGATTAGGAAGGAAACGTCAC 58.417 45.455 0.00 0.00 40.97 3.67
659 666 3.508793 AGACGATTAGGAAGGAAACGTCA 59.491 43.478 16.77 0.00 46.70 4.35
660 667 3.858238 CAGACGATTAGGAAGGAAACGTC 59.142 47.826 0.00 0.00 45.36 4.34
661 668 3.257624 ACAGACGATTAGGAAGGAAACGT 59.742 43.478 0.00 0.00 35.31 3.99
662 669 3.846360 ACAGACGATTAGGAAGGAAACG 58.154 45.455 0.00 0.00 0.00 3.60
663 670 6.555812 AAAACAGACGATTAGGAAGGAAAC 57.444 37.500 0.00 0.00 0.00 2.78
664 671 8.857694 ATAAAAACAGACGATTAGGAAGGAAA 57.142 30.769 0.00 0.00 0.00 3.13
665 672 8.857694 AATAAAAACAGACGATTAGGAAGGAA 57.142 30.769 0.00 0.00 0.00 3.36
666 673 8.319146 AGAATAAAAACAGACGATTAGGAAGGA 58.681 33.333 0.00 0.00 0.00 3.36
667 674 8.391106 CAGAATAAAAACAGACGATTAGGAAGG 58.609 37.037 0.00 0.00 0.00 3.46
668 675 9.151471 TCAGAATAAAAACAGACGATTAGGAAG 57.849 33.333 0.00 0.00 0.00 3.46
669 676 9.496873 TTCAGAATAAAAACAGACGATTAGGAA 57.503 29.630 0.00 0.00 0.00 3.36
670 677 9.151471 CTTCAGAATAAAAACAGACGATTAGGA 57.849 33.333 0.00 0.00 0.00 2.94
671 678 8.391106 CCTTCAGAATAAAAACAGACGATTAGG 58.609 37.037 0.00 0.00 0.00 2.69
672 679 9.151471 TCCTTCAGAATAAAAACAGACGATTAG 57.849 33.333 0.00 0.00 0.00 1.73
673 680 9.496873 TTCCTTCAGAATAAAAACAGACGATTA 57.503 29.630 0.00 0.00 0.00 1.75
674 681 7.979444 TCCTTCAGAATAAAAACAGACGATT 57.021 32.000 0.00 0.00 0.00 3.34
675 682 7.878127 TCTTCCTTCAGAATAAAAACAGACGAT 59.122 33.333 0.00 0.00 32.82 3.73
676 683 7.214381 TCTTCCTTCAGAATAAAAACAGACGA 58.786 34.615 0.00 0.00 32.82 4.20
677 684 7.421530 TCTTCCTTCAGAATAAAAACAGACG 57.578 36.000 0.00 0.00 32.82 4.18
678 685 8.621286 TGTTCTTCCTTCAGAATAAAAACAGAC 58.379 33.333 0.00 0.00 35.23 3.51
679 686 8.746052 TGTTCTTCCTTCAGAATAAAAACAGA 57.254 30.769 0.00 0.00 35.23 3.41
680 687 9.971922 ATTGTTCTTCCTTCAGAATAAAAACAG 57.028 29.630 0.00 0.00 37.41 3.16
715 722 8.207545 AGAAACCTAAGTGCAGATTAGATTAGG 58.792 37.037 16.64 13.13 43.14 2.69
717 724 8.204836 GGAGAAACCTAAGTGCAGATTAGATTA 58.795 37.037 16.64 0.00 32.96 1.75
718 725 7.051000 GGAGAAACCTAAGTGCAGATTAGATT 58.949 38.462 16.64 12.04 32.96 2.40
719 726 6.408662 GGGAGAAACCTAAGTGCAGATTAGAT 60.409 42.308 16.64 0.73 38.98 1.98
720 727 5.104900 GGGAGAAACCTAAGTGCAGATTAGA 60.105 44.000 16.64 0.00 38.98 2.10
721 728 5.119694 GGGAGAAACCTAAGTGCAGATTAG 58.880 45.833 10.42 10.42 38.98 1.73
722 729 4.080526 GGGGAGAAACCTAAGTGCAGATTA 60.081 45.833 0.00 0.00 38.98 1.75
725 732 1.628846 GGGGAGAAACCTAAGTGCAGA 59.371 52.381 0.00 0.00 38.98 4.26
726 733 1.340114 GGGGGAGAAACCTAAGTGCAG 60.340 57.143 0.00 0.00 38.98 4.41
727 734 0.696501 GGGGGAGAAACCTAAGTGCA 59.303 55.000 0.00 0.00 38.98 4.57
728 735 0.392595 CGGGGGAGAAACCTAAGTGC 60.393 60.000 0.00 0.00 38.98 4.40
729 736 0.981943 ACGGGGGAGAAACCTAAGTG 59.018 55.000 0.00 0.00 38.98 3.16
731 738 1.272807 TGACGGGGGAGAAACCTAAG 58.727 55.000 0.00 0.00 38.98 2.18
732 739 1.557832 CATGACGGGGGAGAAACCTAA 59.442 52.381 0.00 0.00 38.98 2.69
733 740 1.200519 CATGACGGGGGAGAAACCTA 58.799 55.000 0.00 0.00 38.98 3.08
734 741 0.840722 ACATGACGGGGGAGAAACCT 60.841 55.000 0.00 0.00 38.98 3.50
735 742 0.392595 GACATGACGGGGGAGAAACC 60.393 60.000 0.00 0.00 38.08 3.27
736 743 0.392595 GGACATGACGGGGGAGAAAC 60.393 60.000 0.00 0.00 0.00 2.78
737 744 0.546747 AGGACATGACGGGGGAGAAA 60.547 55.000 0.00 0.00 0.00 2.52
738 745 0.976073 GAGGACATGACGGGGGAGAA 60.976 60.000 0.00 0.00 0.00 2.87
739 746 1.381327 GAGGACATGACGGGGGAGA 60.381 63.158 0.00 0.00 0.00 3.71
740 747 2.435693 GGAGGACATGACGGGGGAG 61.436 68.421 0.00 0.00 0.00 4.30
742 749 2.365635 AGGAGGACATGACGGGGG 60.366 66.667 0.00 0.00 0.00 5.40
750 790 2.706071 GGGAGGGGAGGAGGACAT 59.294 66.667 0.00 0.00 0.00 3.06
933 989 1.171308 CCCTCGGTCTGTTCGAACTA 58.829 55.000 27.32 13.95 36.15 2.24
1256 1312 1.677637 GGGGATTCTCCTTCGTCGCT 61.678 60.000 0.00 0.00 36.57 4.93
1257 1313 1.227292 GGGGATTCTCCTTCGTCGC 60.227 63.158 0.00 0.00 36.57 5.19
1271 1327 3.562232 AAAGCGTTGGACGGGGGA 61.562 61.111 2.48 0.00 42.82 4.81
1324 1380 0.544357 AGTCCTCCCATTCCACGACA 60.544 55.000 0.00 0.00 0.00 4.35
1329 1385 2.439507 GCTTCATAGTCCTCCCATTCCA 59.560 50.000 0.00 0.00 0.00 3.53
1409 1480 1.847686 TGGGGTCCCAAACGAACAT 59.152 52.632 10.98 0.00 44.12 2.71
1444 1515 1.457831 ATCGGGCCTCTCCAGGTAC 60.458 63.158 0.84 0.00 42.74 3.34
1455 1526 3.839353 CTCCAGCATCCATCGGGCC 62.839 68.421 0.00 0.00 0.00 5.80
1474 1545 4.360405 ACCACCGTGGCCCCATTC 62.360 66.667 17.99 0.00 42.67 2.67
1651 1779 0.957888 GGGTCCACTCAAGCTCAAGC 60.958 60.000 0.00 0.00 42.49 4.01
1652 1780 0.689623 AGGGTCCACTCAAGCTCAAG 59.310 55.000 0.00 0.00 0.00 3.02
1653 1781 0.397941 CAGGGTCCACTCAAGCTCAA 59.602 55.000 0.00 0.00 0.00 3.02
1701 1829 4.445385 GCATTATTTCCGGAATGAATGCAC 59.555 41.667 39.50 26.10 40.18 4.57
1816 1947 4.275196 AGATCAATCAATGACAAGCCATCG 59.725 41.667 0.00 0.00 41.93 3.84
1905 2036 2.627791 GCAAACCCCAAATTGCCAC 58.372 52.632 0.00 0.00 44.72 5.01
2050 2184 6.069673 TGGATCCAATCAGCCTAAGACTTTTA 60.070 38.462 13.46 0.00 0.00 1.52
2152 2370 3.196685 ACTTCTCGCTCTTCCATAGCTTT 59.803 43.478 0.00 0.00 37.85 3.51
2230 2448 7.595819 TGTTACCAAATCAGAAAGAAATGGT 57.404 32.000 0.00 0.00 45.66 3.55
2292 2511 6.374333 AGGTGTAAAATATTTCAGCACGACAT 59.626 34.615 16.73 6.05 36.95 3.06
2377 2615 6.803154 AAGTTTTCTTGAGCCTACATACAC 57.197 37.500 0.00 0.00 38.88 2.90
2419 2657 8.650143 AAGAATAACCAGGTGTAACATTCAAT 57.350 30.769 0.00 0.00 39.98 2.57
2435 2673 6.145696 GTGTGATCGGTAGCATAAGAATAACC 59.854 42.308 0.00 0.00 0.00 2.85
2449 2687 7.734924 ACGTAGATTATTAGTGTGATCGGTA 57.265 36.000 0.00 0.00 0.00 4.02
2450 2688 6.630444 ACGTAGATTATTAGTGTGATCGGT 57.370 37.500 0.00 0.00 0.00 4.69
2451 2689 7.567048 GCAAACGTAGATTATTAGTGTGATCGG 60.567 40.741 0.00 0.00 0.00 4.18
2504 2780 6.379133 ACATTCAACACTAAGCCATCAATGAT 59.621 34.615 0.00 0.00 0.00 2.45
2542 2818 7.630242 TTTTCCAATTGATGATAGTGGACTC 57.370 36.000 7.12 0.00 38.09 3.36
2545 2821 8.469200 GTCATTTTTCCAATTGATGATAGTGGA 58.531 33.333 7.12 0.00 36.59 4.02
2604 2880 7.777910 ACCAAACCAGCTATTAATAGTGCATAA 59.222 33.333 20.89 0.00 32.96 1.90
2637 2914 6.896969 ACCAACAAAATGACAAAACAAACAG 58.103 32.000 0.00 0.00 0.00 3.16
2698 2975 1.303561 ACCCGCTTGTGCATGTCAT 60.304 52.632 0.00 0.00 39.64 3.06
2701 2978 1.518056 CTTCACCCGCTTGTGCATGT 61.518 55.000 0.00 0.00 39.64 3.21
2707 2984 0.988832 TAATCCCTTCACCCGCTTGT 59.011 50.000 0.00 0.00 0.00 3.16
2708 2985 2.158755 AGATAATCCCTTCACCCGCTTG 60.159 50.000 0.00 0.00 0.00 4.01
2848 3129 1.994779 CCAAATGCGGCAACTTGATTC 59.005 47.619 22.53 0.00 0.00 2.52
2879 3479 8.432013 AGTGTGAGATAATATGTAGGCATGAAA 58.568 33.333 0.00 0.00 36.58 2.69
2896 3496 4.853468 TGAGAGACCTCTAGTGTGAGAT 57.147 45.455 0.00 0.00 40.61 2.75
3107 5520 2.426738 CACTTCCTGCTGGACAACAAAA 59.573 45.455 12.53 0.00 43.06 2.44
3110 5523 0.836606 TCACTTCCTGCTGGACAACA 59.163 50.000 12.53 0.00 43.06 3.33
3111 5524 1.967319 TTCACTTCCTGCTGGACAAC 58.033 50.000 12.53 0.00 43.06 3.32
3112 5525 2.727123 TTTCACTTCCTGCTGGACAA 57.273 45.000 12.53 0.00 43.06 3.18
3113 5526 2.886523 CAATTTCACTTCCTGCTGGACA 59.113 45.455 12.53 3.35 43.06 4.02
3114 5527 2.887152 ACAATTTCACTTCCTGCTGGAC 59.113 45.455 12.53 0.00 43.06 4.02
3115 5528 3.228188 ACAATTTCACTTCCTGCTGGA 57.772 42.857 8.48 8.48 41.36 3.86
3116 5529 4.053295 CAAACAATTTCACTTCCTGCTGG 58.947 43.478 2.58 2.58 0.00 4.85
3117 5530 4.741676 GTCAAACAATTTCACTTCCTGCTG 59.258 41.667 0.00 0.00 0.00 4.41
3118 5531 4.202151 GGTCAAACAATTTCACTTCCTGCT 60.202 41.667 0.00 0.00 0.00 4.24
3119 5532 4.051237 GGTCAAACAATTTCACTTCCTGC 58.949 43.478 0.00 0.00 0.00 4.85
3120 5533 5.284079 CAGGTCAAACAATTTCACTTCCTG 58.716 41.667 0.00 0.00 33.99 3.86
3121 5534 4.202151 GCAGGTCAAACAATTTCACTTCCT 60.202 41.667 0.00 0.00 0.00 3.36
3122 5535 4.051237 GCAGGTCAAACAATTTCACTTCC 58.949 43.478 0.00 0.00 0.00 3.46
3123 5536 4.504097 GTGCAGGTCAAACAATTTCACTTC 59.496 41.667 0.00 0.00 0.00 3.01
3124 5537 4.432712 GTGCAGGTCAAACAATTTCACTT 58.567 39.130 0.00 0.00 0.00 3.16
3125 5538 3.181476 GGTGCAGGTCAAACAATTTCACT 60.181 43.478 0.00 0.00 0.00 3.41
3126 5539 3.123050 GGTGCAGGTCAAACAATTTCAC 58.877 45.455 0.00 0.00 0.00 3.18
3127 5540 2.102252 GGGTGCAGGTCAAACAATTTCA 59.898 45.455 0.00 0.00 0.00 2.69
3128 5541 2.547855 GGGGTGCAGGTCAAACAATTTC 60.548 50.000 0.00 0.00 0.00 2.17
3129 5542 1.416030 GGGGTGCAGGTCAAACAATTT 59.584 47.619 0.00 0.00 0.00 1.82
3130 5543 1.047801 GGGGTGCAGGTCAAACAATT 58.952 50.000 0.00 0.00 0.00 2.32
3131 5544 0.188342 AGGGGTGCAGGTCAAACAAT 59.812 50.000 0.00 0.00 0.00 2.71
3132 5545 0.754957 CAGGGGTGCAGGTCAAACAA 60.755 55.000 0.00 0.00 0.00 2.83
3133 5546 1.152777 CAGGGGTGCAGGTCAAACA 60.153 57.895 0.00 0.00 0.00 2.83
3232 5645 4.142790 CCCTAATCATGCAGAATCAGCTT 58.857 43.478 0.00 0.00 0.00 3.74
3235 5648 3.073503 TCCCCCTAATCATGCAGAATCAG 59.926 47.826 0.00 0.00 0.00 2.90
3236 5649 3.055328 TCCCCCTAATCATGCAGAATCA 58.945 45.455 0.00 0.00 0.00 2.57
3237 5650 3.795688 TCCCCCTAATCATGCAGAATC 57.204 47.619 0.00 0.00 0.00 2.52
3238 5651 4.477249 CTTTCCCCCTAATCATGCAGAAT 58.523 43.478 0.00 0.00 0.00 2.40
3239 5652 3.902218 CTTTCCCCCTAATCATGCAGAA 58.098 45.455 0.00 0.00 0.00 3.02
3244 5657 5.835280 ACTAAATGCTTTCCCCCTAATCATG 59.165 40.000 0.00 0.00 0.00 3.07
3247 5660 5.774498 CACTAAATGCTTTCCCCCTAATC 57.226 43.478 0.00 0.00 0.00 1.75
3261 5674 4.581824 ACAGGCCTAATCATGCACTAAATG 59.418 41.667 3.98 0.00 0.00 2.32
3262 5675 4.796606 ACAGGCCTAATCATGCACTAAAT 58.203 39.130 3.98 0.00 0.00 1.40
3263 5676 4.235079 ACAGGCCTAATCATGCACTAAA 57.765 40.909 3.98 0.00 0.00 1.85
3264 5677 3.931907 ACAGGCCTAATCATGCACTAA 57.068 42.857 3.98 0.00 0.00 2.24
3265 5678 3.544684 CAACAGGCCTAATCATGCACTA 58.455 45.455 3.98 0.00 0.00 2.74
3266 5679 2.372264 CAACAGGCCTAATCATGCACT 58.628 47.619 3.98 0.00 0.00 4.40
3274 5687 1.856629 AATGCAGCAACAGGCCTAAT 58.143 45.000 3.98 0.00 46.50 1.73
3275 5688 2.491693 GTTAATGCAGCAACAGGCCTAA 59.508 45.455 3.98 0.00 46.50 2.69
3276 5689 2.091541 GTTAATGCAGCAACAGGCCTA 58.908 47.619 3.98 0.00 46.50 3.93
3413 5826 0.749454 CAAGAAATGGCGCCCTAGCT 60.749 55.000 26.77 13.68 36.60 3.32
3416 5829 0.908910 TCTCAAGAAATGGCGCCCTA 59.091 50.000 26.77 6.41 0.00 3.53
3418 5831 1.106285 ATTCTCAAGAAATGGCGCCC 58.894 50.000 26.77 8.39 37.61 6.13
3419 5832 2.164219 TGAATTCTCAAGAAATGGCGCC 59.836 45.455 22.73 22.73 37.61 6.53
3420 5833 3.492421 TGAATTCTCAAGAAATGGCGC 57.508 42.857 7.05 0.00 37.61 6.53
3421 5834 5.164022 GCTTTTGAATTCTCAAGAAATGGCG 60.164 40.000 16.86 0.00 42.48 5.69
3422 5835 5.697633 TGCTTTTGAATTCTCAAGAAATGGC 59.302 36.000 16.86 11.31 42.48 4.40
3423 5836 7.900782 ATGCTTTTGAATTCTCAAGAAATGG 57.099 32.000 16.86 4.06 42.48 3.16
3516 5930 1.374190 CACTTGAGCTCACAGGGCT 59.626 57.895 18.03 0.00 43.26 5.19
3529 5943 6.678878 TCTTCTTACTGTACTAGTGCACTTG 58.321 40.000 27.06 25.33 40.65 3.16
3550 5967 1.922447 TGTGCATTGTATCCCCCTCTT 59.078 47.619 0.00 0.00 0.00 2.85
3565 5982 1.750206 TGCTCTTTGAAAAGCTGTGCA 59.250 42.857 11.37 0.00 39.31 4.57
3600 6023 3.387374 AGATTTTGAATGTGGTGTGGCAA 59.613 39.130 0.00 0.00 0.00 4.52
3667 6090 5.906073 TGATCTGATCTCGCACATTTCTTA 58.094 37.500 17.82 0.00 0.00 2.10
3725 6883 6.474102 GCTCTGTTGTTTCTATAGACAGTAGC 59.526 42.308 14.73 16.13 38.95 3.58


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.