Multiple sequence alignment - TraesCS5B01G552000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G552000 chr5B 100.000 2568 0 0 1 2568 703089814 703087247 0.000000e+00 4743.0
1 TraesCS5B01G552000 chr5B 88.060 201 16 5 1885 2084 703068425 703068232 5.530000e-57 231.0
2 TraesCS5B01G552000 chr5B 87.931 58 7 0 2170 2227 703065951 703065894 4.580000e-08 69.4
3 TraesCS5B01G552000 chr4A 86.707 820 58 20 210 1018 617048229 617049008 0.000000e+00 863.0
4 TraesCS5B01G552000 chr4A 84.323 842 70 23 1013 1847 617050168 617050954 0.000000e+00 767.0
5 TraesCS5B01G552000 chr4A 90.991 111 10 0 2279 2389 583436596 583436486 1.590000e-32 150.0
6 TraesCS5B01G552000 chr4A 95.745 47 2 0 2071 2117 617051341 617051387 2.740000e-10 76.8
7 TraesCS5B01G552000 chr5D 93.064 346 17 4 1885 2229 550562604 550562265 1.370000e-137 499.0
8 TraesCS5B01G552000 chr5D 88.442 398 28 5 1302 1689 550576524 550576135 5.000000e-127 464.0
9 TraesCS5B01G552000 chr5D 88.889 369 21 9 210 572 550577491 550577137 1.090000e-118 436.0
10 TraesCS5B01G552000 chr5D 91.057 246 17 4 980 1220 550576785 550576540 6.850000e-86 327.0
11 TraesCS5B01G552000 chr5D 86.567 268 12 15 1578 1842 550562955 550562709 9.050000e-70 274.0
12 TraesCS5B01G552000 chr5D 93.333 180 11 1 2387 2565 550562270 550562091 5.450000e-67 265.0
13 TraesCS5B01G552000 chr5D 100.000 36 0 0 930 965 550576890 550576855 1.650000e-07 67.6
14 TraesCS5B01G552000 chr5D 100.000 30 0 0 1851 1880 550562677 550562648 3.570000e-04 56.5
15 TraesCS5B01G552000 chr4B 100.000 118 0 0 1 118 385954457 385954574 4.300000e-53 219.0
16 TraesCS5B01G552000 chr7B 100.000 117 0 0 1 117 130268949 130269065 1.550000e-52 217.0
17 TraesCS5B01G552000 chr7B 92.373 118 9 0 2276 2393 475645234 475645351 4.390000e-38 169.0
18 TraesCS5B01G552000 chr3A 100.000 117 0 0 1 117 209407796 209407680 1.550000e-52 217.0
19 TraesCS5B01G552000 chr1A 99.153 118 1 0 1 118 60805002 60805119 2.000000e-51 213.0
20 TraesCS5B01G552000 chr1A 93.860 114 7 0 2279 2392 241746602 241746489 3.400000e-39 172.0
21 TraesCS5B01G552000 chr2B 99.145 117 1 0 1 117 679155109 679154993 7.200000e-51 211.0
22 TraesCS5B01G552000 chr2B 92.105 114 9 0 2279 2392 314771221 314771108 7.350000e-36 161.0
23 TraesCS5B01G552000 chr7A 98.305 118 2 0 1 118 301639289 301639172 9.310000e-50 207.0
24 TraesCS5B01G552000 chr6A 98.305 118 2 0 1 118 237919405 237919288 9.310000e-50 207.0
25 TraesCS5B01G552000 chr6A 98.305 118 2 0 1 118 384684660 384684777 9.310000e-50 207.0
26 TraesCS5B01G552000 chr5A 98.305 118 2 0 1 118 398892560 398892677 9.310000e-50 207.0
27 TraesCS5B01G552000 chr5A 87.288 118 11 4 2279 2394 663390336 663390221 5.770000e-27 132.0
28 TraesCS5B01G552000 chr3B 93.277 119 8 0 2276 2394 174147012 174147130 2.630000e-40 176.0
29 TraesCS5B01G552000 chr6B 93.043 115 8 0 2276 2390 80856407 80856521 4.390000e-38 169.0
30 TraesCS5B01G552000 chr6B 96.774 31 1 0 2236 2266 284713806 284713836 5.000000e-03 52.8
31 TraesCS5B01G552000 chr6D 92.105 114 9 0 2279 2392 101503546 101503433 7.350000e-36 161.0
32 TraesCS5B01G552000 chr6D 97.059 34 1 0 2236 2269 101504605 101504572 9.920000e-05 58.4
33 TraesCS5B01G552000 chr3D 88.136 118 12 2 2276 2392 26281571 26281687 3.450000e-29 139.0
34 TraesCS5B01G552000 chr1B 96.970 33 1 0 2237 2269 553942044 553942012 3.570000e-04 56.5
35 TraesCS5B01G552000 chr2A 100.000 28 0 0 2239 2266 38220944 38220971 5.000000e-03 52.8
36 TraesCS5B01G552000 chr1D 100.000 28 0 0 2239 2266 461000279 461000306 5.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G552000 chr5B 703087247 703089814 2567 True 4743.000000 4743 100.000 1 2568 1 chr5B.!!$R1 2567
1 TraesCS5B01G552000 chr4A 617048229 617051387 3158 False 568.933333 863 88.925 210 2117 3 chr4A.!!$F1 1907
2 TraesCS5B01G552000 chr5D 550576135 550577491 1356 True 323.650000 464 92.097 210 1689 4 chr5D.!!$R2 1479
3 TraesCS5B01G552000 chr5D 550562091 550562955 864 True 273.625000 499 93.241 1578 2565 4 chr5D.!!$R1 987

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
139 140 0.038892 GTAGCCACGGACAGACGAAA 60.039 55.0 0.0 0.0 37.61 3.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2134 3665 0.108709 TTGGTACGTACGGCATGGAC 60.109 55.0 21.06 7.12 0.0 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 4.825252 CCCGGCCCGTTTAGACCG 62.825 72.222 0.85 0.00 45.21 4.79
36 37 4.073200 CCGGCCCGTTTAGACCGT 62.073 66.667 0.85 0.00 44.14 4.83
37 38 2.812178 CGGCCCGTTTAGACCGTG 60.812 66.667 0.00 0.00 40.77 4.94
38 39 3.122971 GGCCCGTTTAGACCGTGC 61.123 66.667 0.00 0.00 0.00 5.34
39 40 3.122971 GCCCGTTTAGACCGTGCC 61.123 66.667 0.00 0.00 0.00 5.01
40 41 2.812178 CCCGTTTAGACCGTGCCG 60.812 66.667 0.00 0.00 0.00 5.69
41 42 2.048877 CCGTTTAGACCGTGCCGT 60.049 61.111 0.00 0.00 0.00 5.68
42 43 2.377310 CCGTTTAGACCGTGCCGTG 61.377 63.158 0.00 0.00 0.00 4.94
43 44 2.858158 GTTTAGACCGTGCCGTGC 59.142 61.111 0.00 0.00 0.00 5.34
44 45 2.357760 TTTAGACCGTGCCGTGCC 60.358 61.111 0.00 0.00 0.00 5.01
45 46 2.874664 TTTAGACCGTGCCGTGCCT 61.875 57.895 0.00 0.00 0.00 4.75
46 47 3.583276 TTAGACCGTGCCGTGCCTG 62.583 63.158 0.00 0.00 0.00 4.85
96 97 3.744719 GGCCGGCCCGAAAAGAAC 61.745 66.667 36.64 5.01 0.00 3.01
97 98 4.097863 GCCGGCCCGAAAAGAACG 62.098 66.667 18.11 0.00 0.00 3.95
103 104 3.996614 CCGAAAAGAACGGCCCAT 58.003 55.556 0.00 0.00 43.74 4.00
104 105 2.263153 CCGAAAAGAACGGCCCATT 58.737 52.632 0.00 0.00 43.74 3.16
105 106 0.601057 CCGAAAAGAACGGCCCATTT 59.399 50.000 0.00 0.00 43.74 2.32
106 107 1.668628 CCGAAAAGAACGGCCCATTTG 60.669 52.381 0.00 0.00 43.74 2.32
107 108 1.668628 CGAAAAGAACGGCCCATTTGG 60.669 52.381 0.00 0.00 37.09 3.28
118 119 2.363306 CCCATTTGGCCAGCTATACA 57.637 50.000 5.11 0.00 0.00 2.29
119 120 2.665165 CCCATTTGGCCAGCTATACAA 58.335 47.619 5.11 0.00 0.00 2.41
120 121 2.624838 CCCATTTGGCCAGCTATACAAG 59.375 50.000 5.11 0.00 0.00 3.16
121 122 3.290710 CCATTTGGCCAGCTATACAAGT 58.709 45.455 5.11 0.00 0.00 3.16
122 123 4.460263 CCATTTGGCCAGCTATACAAGTA 58.540 43.478 5.11 0.00 0.00 2.24
123 124 4.516698 CCATTTGGCCAGCTATACAAGTAG 59.483 45.833 5.11 0.00 0.00 2.57
124 125 2.910688 TGGCCAGCTATACAAGTAGC 57.089 50.000 0.00 0.00 45.83 3.58
125 126 1.416401 TGGCCAGCTATACAAGTAGCC 59.584 52.381 0.00 0.00 46.48 3.93
126 127 1.416401 GGCCAGCTATACAAGTAGCCA 59.584 52.381 0.00 0.00 46.48 4.75
127 128 2.484889 GCCAGCTATACAAGTAGCCAC 58.515 52.381 2.54 0.00 46.48 5.01
128 129 2.743938 CCAGCTATACAAGTAGCCACG 58.256 52.381 2.54 0.00 46.48 4.94
129 130 2.545952 CCAGCTATACAAGTAGCCACGG 60.546 54.545 2.54 0.00 46.48 4.94
130 131 2.361119 CAGCTATACAAGTAGCCACGGA 59.639 50.000 2.54 0.00 46.48 4.69
131 132 2.361438 AGCTATACAAGTAGCCACGGAC 59.639 50.000 2.54 0.00 46.48 4.79
132 133 2.100252 GCTATACAAGTAGCCACGGACA 59.900 50.000 0.00 0.00 40.92 4.02
133 134 2.961526 ATACAAGTAGCCACGGACAG 57.038 50.000 0.00 0.00 0.00 3.51
134 135 1.913778 TACAAGTAGCCACGGACAGA 58.086 50.000 0.00 0.00 0.00 3.41
135 136 0.317479 ACAAGTAGCCACGGACAGAC 59.683 55.000 0.00 0.00 0.00 3.51
136 137 0.732880 CAAGTAGCCACGGACAGACG 60.733 60.000 0.00 0.00 40.31 4.18
137 138 0.892358 AAGTAGCCACGGACAGACGA 60.892 55.000 0.00 0.00 37.61 4.20
138 139 0.892358 AGTAGCCACGGACAGACGAA 60.892 55.000 0.00 0.00 37.61 3.85
139 140 0.038892 GTAGCCACGGACAGACGAAA 60.039 55.000 0.00 0.00 37.61 3.46
140 141 0.675083 TAGCCACGGACAGACGAAAA 59.325 50.000 0.00 0.00 37.61 2.29
141 142 0.179067 AGCCACGGACAGACGAAAAA 60.179 50.000 0.00 0.00 37.61 1.94
164 165 3.764885 AAATCTTTTTCTCATCCGGCG 57.235 42.857 0.00 0.00 0.00 6.46
165 166 1.017387 ATCTTTTTCTCATCCGGCGC 58.983 50.000 0.00 0.00 0.00 6.53
166 167 1.024579 TCTTTTTCTCATCCGGCGCC 61.025 55.000 19.07 19.07 0.00 6.53
167 168 2.309764 CTTTTTCTCATCCGGCGCCG 62.310 60.000 41.00 41.00 39.44 6.46
181 182 3.857038 GCCGCCCTGTATTCCCGA 61.857 66.667 0.00 0.00 0.00 5.14
182 183 2.904905 CCGCCCTGTATTCCCGAA 59.095 61.111 0.00 0.00 0.00 4.30
183 184 1.222387 CCGCCCTGTATTCCCGAAA 59.778 57.895 0.00 0.00 0.00 3.46
184 185 1.093496 CCGCCCTGTATTCCCGAAAC 61.093 60.000 0.00 0.00 0.00 2.78
185 186 0.107848 CGCCCTGTATTCCCGAAACT 60.108 55.000 0.00 0.00 0.00 2.66
186 187 1.379527 GCCCTGTATTCCCGAAACTG 58.620 55.000 0.00 0.00 0.00 3.16
187 188 1.379527 CCCTGTATTCCCGAAACTGC 58.620 55.000 0.00 0.00 0.00 4.40
188 189 1.379527 CCTGTATTCCCGAAACTGCC 58.620 55.000 0.00 0.00 0.00 4.85
189 190 1.379527 CTGTATTCCCGAAACTGCCC 58.620 55.000 0.00 0.00 0.00 5.36
190 191 0.988832 TGTATTCCCGAAACTGCCCT 59.011 50.000 0.00 0.00 0.00 5.19
191 192 1.065709 TGTATTCCCGAAACTGCCCTC 60.066 52.381 0.00 0.00 0.00 4.30
192 193 0.177141 TATTCCCGAAACTGCCCTCG 59.823 55.000 0.00 0.00 34.83 4.63
196 197 4.617875 CGAAACTGCCCTCGGAAT 57.382 55.556 0.00 0.00 0.00 3.01
197 198 2.384203 CGAAACTGCCCTCGGAATC 58.616 57.895 0.00 0.00 0.00 2.52
198 199 0.108138 CGAAACTGCCCTCGGAATCT 60.108 55.000 0.00 0.00 0.00 2.40
199 200 1.657822 GAAACTGCCCTCGGAATCTC 58.342 55.000 0.00 0.00 0.00 2.75
200 201 1.208293 GAAACTGCCCTCGGAATCTCT 59.792 52.381 0.00 0.00 0.00 3.10
201 202 0.827368 AACTGCCCTCGGAATCTCTC 59.173 55.000 0.00 0.00 0.00 3.20
202 203 1.045911 ACTGCCCTCGGAATCTCTCC 61.046 60.000 0.00 0.00 41.40 3.71
203 204 1.753368 CTGCCCTCGGAATCTCTCCC 61.753 65.000 0.00 0.00 41.87 4.30
204 205 2.512355 GCCCTCGGAATCTCTCCCC 61.512 68.421 0.00 0.00 41.87 4.81
205 206 1.075226 CCCTCGGAATCTCTCCCCA 60.075 63.158 0.00 0.00 41.87 4.96
206 207 0.691078 CCCTCGGAATCTCTCCCCAA 60.691 60.000 0.00 0.00 41.87 4.12
207 208 0.466124 CCTCGGAATCTCTCCCCAAC 59.534 60.000 0.00 0.00 41.87 3.77
208 209 0.103208 CTCGGAATCTCTCCCCAACG 59.897 60.000 0.00 0.00 41.87 4.10
209 210 1.521681 CGGAATCTCTCCCCAACGC 60.522 63.158 0.00 0.00 41.87 4.84
210 211 1.908483 GGAATCTCTCCCCAACGCT 59.092 57.895 0.00 0.00 38.44 5.07
211 212 0.179070 GGAATCTCTCCCCAACGCTC 60.179 60.000 0.00 0.00 38.44 5.03
212 213 0.528684 GAATCTCTCCCCAACGCTCG 60.529 60.000 0.00 0.00 0.00 5.03
213 214 2.579684 AATCTCTCCCCAACGCTCGC 62.580 60.000 0.00 0.00 0.00 5.03
234 236 2.444706 CGCTCCCTCCCATCCTCA 60.445 66.667 0.00 0.00 0.00 3.86
241 243 1.415716 CCCTCCCATCCTCATCTTCCT 60.416 57.143 0.00 0.00 0.00 3.36
394 396 4.880537 CTCCTGCAGGTAGGCGCG 62.881 72.222 31.58 0.00 37.76 6.86
463 467 1.098050 GCATAGTGGCCACTGGAAAG 58.902 55.000 42.35 27.60 42.52 2.62
479 483 1.408702 GAAAGTGGAAACTGCCAAGCA 59.591 47.619 0.00 0.00 40.20 3.91
499 505 3.131400 GCAGAGTAGGACCTCTTACCTTG 59.869 52.174 0.00 0.00 39.81 3.61
529 541 0.103572 TTGCTACCGGTAGAATCGCC 59.896 55.000 39.65 23.13 35.21 5.54
534 546 1.219664 CCGGTAGAATCGCCAACCA 59.780 57.895 0.00 0.00 32.04 3.67
556 568 4.206477 TGGGTCAGACATGAATACTGTG 57.794 45.455 0.00 0.00 37.14 3.66
596 608 7.489160 TGATGTATGTGTGCCTAGTTAGTTAG 58.511 38.462 0.00 0.00 0.00 2.34
599 611 8.352137 TGTATGTGTGCCTAGTTAGTTAGTTA 57.648 34.615 0.00 0.00 0.00 2.24
600 612 8.464404 TGTATGTGTGCCTAGTTAGTTAGTTAG 58.536 37.037 0.00 0.00 0.00 2.34
601 613 6.906157 TGTGTGCCTAGTTAGTTAGTTAGT 57.094 37.500 0.00 0.00 0.00 2.24
603 615 7.729116 TGTGTGCCTAGTTAGTTAGTTAGTTT 58.271 34.615 0.00 0.00 0.00 2.66
604 616 8.206189 TGTGTGCCTAGTTAGTTAGTTAGTTTT 58.794 33.333 0.00 0.00 0.00 2.43
635 647 3.242284 CGATGTGGTAAAATGTACAGCCG 60.242 47.826 0.33 0.00 0.00 5.52
674 686 2.040330 TGCATTGCAGTGGTGTTCC 58.960 52.632 7.38 0.00 33.32 3.62
675 687 0.467844 TGCATTGCAGTGGTGTTCCT 60.468 50.000 7.38 0.00 33.32 3.36
676 688 0.242017 GCATTGCAGTGGTGTTCCTC 59.758 55.000 11.53 0.00 34.23 3.71
677 689 1.901591 CATTGCAGTGGTGTTCCTCT 58.098 50.000 0.32 0.00 37.97 3.69
688 700 3.006859 TGGTGTTCCTCTGATGTACACAG 59.993 47.826 18.87 15.28 40.54 3.66
695 707 6.516739 TCCTCTGATGTACACAGTTCTTAG 57.483 41.667 18.67 11.64 36.81 2.18
723 735 7.709182 TCACTCGTTTATCTTTCTCTGAAACAA 59.291 33.333 0.00 0.00 31.73 2.83
726 738 7.851508 TCGTTTATCTTTCTCTGAAACAAGTG 58.148 34.615 0.00 0.00 31.73 3.16
742 754 8.664798 TGAAACAAGTGTTATTTCTGGATATCG 58.335 33.333 0.00 0.00 37.25 2.92
772 784 3.774066 CGCATCACTGTAGTTCAGATCA 58.226 45.455 3.49 0.00 46.27 2.92
782 794 5.118990 TGTAGTTCAGATCAATTAGCTGCC 58.881 41.667 0.00 0.00 41.56 4.85
783 795 3.201290 AGTTCAGATCAATTAGCTGCCG 58.799 45.455 0.00 0.00 41.56 5.69
784 796 1.586422 TCAGATCAATTAGCTGCCGC 58.414 50.000 0.00 0.00 41.56 6.53
785 797 1.134431 TCAGATCAATTAGCTGCCGCA 60.134 47.619 2.05 0.00 41.56 5.69
786 798 1.263484 CAGATCAATTAGCTGCCGCAG 59.737 52.381 16.47 16.47 34.25 5.18
787 799 1.134280 AGATCAATTAGCTGCCGCAGT 60.134 47.619 21.29 10.81 39.10 4.40
788 800 1.003116 GATCAATTAGCTGCCGCAGTG 60.003 52.381 21.29 11.38 39.10 3.66
789 801 1.226491 CAATTAGCTGCCGCAGTGC 60.226 57.895 21.29 4.58 39.10 4.40
810 828 1.569708 GCTGAAGCTGAATCCTCTCG 58.430 55.000 0.00 0.00 38.21 4.04
824 842 6.316140 TGAATCCTCTCGGTTTTATGTGATTG 59.684 38.462 0.00 0.00 0.00 2.67
876 904 0.666577 AAACCAGAGCACGTACGAGC 60.667 55.000 27.05 27.05 0.00 5.03
879 907 1.515088 CAGAGCACGTACGAGCCTG 60.515 63.158 29.76 28.28 32.18 4.85
886 914 2.066262 CACGTACGAGCCTGTCAAAAT 58.934 47.619 24.41 0.00 0.00 1.82
916 944 7.035612 CCTATAAAACATTGAAACTTCTGCCC 58.964 38.462 0.00 0.00 0.00 5.36
967 1042 6.012745 AGCTGGAAACAATTTCAGGAAGTAT 58.987 36.000 3.87 0.00 42.06 2.12
976 1106 6.930722 ACAATTTCAGGAAGTATTGCCAAAAG 59.069 34.615 6.42 0.00 36.97 2.27
1060 2356 2.284798 GATGCGGCCAGAGTCGAAGA 62.285 60.000 2.24 0.00 46.55 2.87
1101 2397 4.162690 ACCGCGGGCATCTTCTCC 62.163 66.667 31.76 0.00 0.00 3.71
1162 2462 7.635089 GCCTTCACTATGGTAGTATTTCTTCCA 60.635 40.741 0.00 0.00 45.26 3.53
1175 2475 8.788325 AGTATTTCTTCCACCACATACTTTAC 57.212 34.615 0.00 0.00 0.00 2.01
1176 2476 8.603304 AGTATTTCTTCCACCACATACTTTACT 58.397 33.333 0.00 0.00 0.00 2.24
1193 2496 9.862371 ATACTTTACTTTGTCTACTCACTCATG 57.138 33.333 0.00 0.00 0.00 3.07
1199 2502 6.040955 ACTTTGTCTACTCACTCATGTTCAGA 59.959 38.462 0.00 0.00 0.00 3.27
1220 2523 6.316140 TCAGACATGCATACACCTATTTGTTC 59.684 38.462 0.00 0.00 0.00 3.18
1230 2539 6.721571 ACACCTATTTGTTCGTTGATACTG 57.278 37.500 0.00 0.00 0.00 2.74
1231 2540 5.121768 ACACCTATTTGTTCGTTGATACTGC 59.878 40.000 0.00 0.00 0.00 4.40
1234 2543 0.793861 TTGTTCGTTGATACTGCCGC 59.206 50.000 0.00 0.00 0.00 6.53
1236 2545 0.739813 GTTCGTTGATACTGCCGCCT 60.740 55.000 0.00 0.00 0.00 5.52
1242 2551 2.124983 ATACTGCCGCCTGTGCTG 60.125 61.111 0.00 0.00 34.43 4.41
1244 2553 3.881952 TACTGCCGCCTGTGCTGTG 62.882 63.158 5.23 0.00 40.48 3.66
1245 2554 4.994471 CTGCCGCCTGTGCTGTGA 62.994 66.667 0.00 0.00 34.43 3.58
1246 2555 4.560743 TGCCGCCTGTGCTGTGAA 62.561 61.111 0.00 0.00 34.43 3.18
1247 2556 3.058160 GCCGCCTGTGCTGTGAAT 61.058 61.111 0.00 0.00 34.43 2.57
1248 2557 3.044059 GCCGCCTGTGCTGTGAATC 62.044 63.158 0.00 0.00 34.43 2.52
1249 2558 1.376424 CCGCCTGTGCTGTGAATCT 60.376 57.895 0.00 0.00 34.43 2.40
1250 2559 0.957395 CCGCCTGTGCTGTGAATCTT 60.957 55.000 0.00 0.00 34.43 2.40
1251 2560 0.167470 CGCCTGTGCTGTGAATCTTG 59.833 55.000 0.00 0.00 34.43 3.02
1252 2561 1.242076 GCCTGTGCTGTGAATCTTGT 58.758 50.000 0.00 0.00 33.53 3.16
1253 2562 1.610522 GCCTGTGCTGTGAATCTTGTT 59.389 47.619 0.00 0.00 33.53 2.83
1254 2563 2.351157 GCCTGTGCTGTGAATCTTGTTC 60.351 50.000 0.00 0.00 33.53 3.18
1255 2564 3.144506 CCTGTGCTGTGAATCTTGTTCT 58.855 45.455 0.00 0.00 0.00 3.01
1256 2565 3.567164 CCTGTGCTGTGAATCTTGTTCTT 59.433 43.478 0.00 0.00 0.00 2.52
1257 2566 4.037208 CCTGTGCTGTGAATCTTGTTCTTT 59.963 41.667 0.00 0.00 0.00 2.52
1258 2567 5.450965 CCTGTGCTGTGAATCTTGTTCTTTT 60.451 40.000 0.00 0.00 0.00 2.27
1259 2568 5.581605 TGTGCTGTGAATCTTGTTCTTTTC 58.418 37.500 0.00 0.00 0.00 2.29
1260 2569 5.125257 TGTGCTGTGAATCTTGTTCTTTTCA 59.875 36.000 0.00 0.00 0.00 2.69
1264 2573 6.361748 GCTGTGAATCTTGTTCTTTTCATGTC 59.638 38.462 0.00 0.00 31.39 3.06
1270 2579 8.908786 AATCTTGTTCTTTTCATGTCTCTGTA 57.091 30.769 0.00 0.00 0.00 2.74
1274 2583 9.645059 CTTGTTCTTTTCATGTCTCTGTATCTA 57.355 33.333 0.00 0.00 0.00 1.98
1276 2585 9.809096 TGTTCTTTTCATGTCTCTGTATCTATC 57.191 33.333 0.00 0.00 0.00 2.08
1283 2592 9.799106 TTCATGTCTCTGTATCTATCTACATGA 57.201 33.333 9.96 9.96 46.01 3.07
1313 2622 9.383462 GTATGAATACAGTATCGAGTGTTACTG 57.617 37.037 18.09 18.09 46.68 2.74
1330 2639 4.445545 GGCCGTCGAAAGCAAGCG 62.446 66.667 9.85 0.00 0.00 4.68
1346 2655 2.457366 AGCGACTCGAACCTTGAAAT 57.543 45.000 1.63 0.00 0.00 2.17
1349 2658 3.678548 AGCGACTCGAACCTTGAAATTAC 59.321 43.478 1.63 0.00 0.00 1.89
1353 2662 5.389516 CGACTCGAACCTTGAAATTACTTGG 60.390 44.000 0.00 0.00 0.00 3.61
1357 2666 7.230712 ACTCGAACCTTGAAATTACTTGGATTT 59.769 33.333 0.00 0.00 0.00 2.17
1358 2667 8.624367 TCGAACCTTGAAATTACTTGGATTTA 57.376 30.769 0.00 0.00 0.00 1.40
1359 2668 9.069082 TCGAACCTTGAAATTACTTGGATTTAA 57.931 29.630 0.00 0.00 0.00 1.52
1360 2669 9.855021 CGAACCTTGAAATTACTTGGATTTAAT 57.145 29.630 0.00 0.00 0.00 1.40
1384 2693 3.621715 GCTAACCCTGCAGTGTATTGTAC 59.378 47.826 13.81 0.00 0.00 2.90
1391 2700 4.807834 CCTGCAGTGTATTGTACTCATCTG 59.192 45.833 13.81 0.00 0.00 2.90
1568 2887 0.097674 CGAACACAAGCCTGCATAGC 59.902 55.000 0.66 0.66 0.00 2.97
1569 2888 1.167851 GAACACAAGCCTGCATAGCA 58.832 50.000 11.08 0.00 36.92 3.49
1640 2959 1.067565 TGGAGACTCGTTCATCTGCAC 60.068 52.381 0.00 0.00 38.25 4.57
1736 3055 1.376037 CGGTGAAAGGTCCAGGAGC 60.376 63.158 11.04 11.04 0.00 4.70
1835 3154 5.120830 CCTCTGTAACTTAACATGACAGTGC 59.879 44.000 0.00 0.00 38.87 4.40
1842 3161 9.382244 GTAACTTAACATGACAGTGCTAAAAAG 57.618 33.333 0.00 0.00 0.00 2.27
1847 3166 4.516698 ACATGACAGTGCTAAAAAGGTCTG 59.483 41.667 0.00 0.00 0.00 3.51
1934 3465 4.235762 ACGCCACCGTCTGCTGTT 62.236 61.111 0.00 0.00 46.39 3.16
1935 3466 3.716006 CGCCACCGTCTGCTGTTG 61.716 66.667 0.00 0.00 0.00 3.33
1941 3472 4.335647 CGTCTGCTGTTGGGCCCT 62.336 66.667 25.70 0.00 0.00 5.19
2150 3681 2.849880 TTAGTCCATGCCGTACGTAC 57.150 50.000 15.90 15.90 0.00 3.67
2157 3688 1.326245 CATGCCGTACGTACCAATGTG 59.674 52.381 19.67 8.84 0.00 3.21
2223 3754 2.574955 GGTCACTCGCCTGTCCTGT 61.575 63.158 0.00 0.00 0.00 4.00
2227 3758 1.534235 ACTCGCCTGTCCTGTCCTT 60.534 57.895 0.00 0.00 0.00 3.36
2228 3759 1.122019 ACTCGCCTGTCCTGTCCTTT 61.122 55.000 0.00 0.00 0.00 3.11
2229 3760 0.390472 CTCGCCTGTCCTGTCCTTTC 60.390 60.000 0.00 0.00 0.00 2.62
2230 3761 0.832135 TCGCCTGTCCTGTCCTTTCT 60.832 55.000 0.00 0.00 0.00 2.52
2231 3762 0.671781 CGCCTGTCCTGTCCTTTCTG 60.672 60.000 0.00 0.00 0.00 3.02
2232 3763 0.398318 GCCTGTCCTGTCCTTTCTGT 59.602 55.000 0.00 0.00 0.00 3.41
2233 3764 1.609320 GCCTGTCCTGTCCTTTCTGTC 60.609 57.143 0.00 0.00 0.00 3.51
2234 3765 1.002544 CCTGTCCTGTCCTTTCTGTCC 59.997 57.143 0.00 0.00 0.00 4.02
2235 3766 1.974236 CTGTCCTGTCCTTTCTGTCCT 59.026 52.381 0.00 0.00 0.00 3.85
2236 3767 2.370189 CTGTCCTGTCCTTTCTGTCCTT 59.630 50.000 0.00 0.00 0.00 3.36
2237 3768 2.777692 TGTCCTGTCCTTTCTGTCCTTT 59.222 45.455 0.00 0.00 0.00 3.11
2238 3769 3.971305 TGTCCTGTCCTTTCTGTCCTTTA 59.029 43.478 0.00 0.00 0.00 1.85
2239 3770 4.040461 TGTCCTGTCCTTTCTGTCCTTTAG 59.960 45.833 0.00 0.00 0.00 1.85
2240 3771 3.583086 TCCTGTCCTTTCTGTCCTTTAGG 59.417 47.826 0.00 0.00 0.00 2.69
2241 3772 3.307762 CCTGTCCTTTCTGTCCTTTAGGG 60.308 52.174 0.00 0.00 35.41 3.53
2242 3773 3.323775 TGTCCTTTCTGTCCTTTAGGGT 58.676 45.455 0.00 0.00 36.25 4.34
2243 3774 3.072476 TGTCCTTTCTGTCCTTTAGGGTG 59.928 47.826 0.00 0.00 36.25 4.61
2244 3775 3.072622 GTCCTTTCTGTCCTTTAGGGTGT 59.927 47.826 0.00 0.00 36.25 4.16
2245 3776 3.072476 TCCTTTCTGTCCTTTAGGGTGTG 59.928 47.826 0.00 0.00 36.25 3.82
2246 3777 3.181443 CCTTTCTGTCCTTTAGGGTGTGT 60.181 47.826 0.00 0.00 36.25 3.72
2247 3778 4.461198 CTTTCTGTCCTTTAGGGTGTGTT 58.539 43.478 0.00 0.00 36.25 3.32
2248 3779 4.513406 TTCTGTCCTTTAGGGTGTGTTT 57.487 40.909 0.00 0.00 36.25 2.83
2249 3780 3.815809 TCTGTCCTTTAGGGTGTGTTTG 58.184 45.455 0.00 0.00 36.25 2.93
2250 3781 2.884639 CTGTCCTTTAGGGTGTGTTTGG 59.115 50.000 0.00 0.00 36.25 3.28
2251 3782 2.242708 TGTCCTTTAGGGTGTGTTTGGT 59.757 45.455 0.00 0.00 36.25 3.67
2252 3783 3.293337 GTCCTTTAGGGTGTGTTTGGTT 58.707 45.455 0.00 0.00 36.25 3.67
2253 3784 3.317149 GTCCTTTAGGGTGTGTTTGGTTC 59.683 47.826 0.00 0.00 36.25 3.62
2254 3785 3.053544 TCCTTTAGGGTGTGTTTGGTTCA 60.054 43.478 0.00 0.00 36.25 3.18
2255 3786 3.317993 CCTTTAGGGTGTGTTTGGTTCAG 59.682 47.826 0.00 0.00 0.00 3.02
2256 3787 2.649531 TAGGGTGTGTTTGGTTCAGG 57.350 50.000 0.00 0.00 0.00 3.86
2257 3788 0.106217 AGGGTGTGTTTGGTTCAGGG 60.106 55.000 0.00 0.00 0.00 4.45
2258 3789 0.106419 GGGTGTGTTTGGTTCAGGGA 60.106 55.000 0.00 0.00 0.00 4.20
2259 3790 1.686741 GGGTGTGTTTGGTTCAGGGAA 60.687 52.381 0.00 0.00 0.00 3.97
2260 3791 2.316108 GGTGTGTTTGGTTCAGGGAAT 58.684 47.619 0.00 0.00 0.00 3.01
2261 3792 2.035832 GGTGTGTTTGGTTCAGGGAATG 59.964 50.000 0.00 0.00 0.00 2.67
2262 3793 2.955660 GTGTGTTTGGTTCAGGGAATGA 59.044 45.455 0.00 0.00 35.62 2.57
2263 3794 3.383185 GTGTGTTTGGTTCAGGGAATGAA 59.617 43.478 0.00 0.00 45.79 2.57
2272 3803 4.451629 TTCAGGGAATGAAGTCGACTAC 57.548 45.455 20.39 8.12 43.09 2.73
2273 3804 2.758979 TCAGGGAATGAAGTCGACTACC 59.241 50.000 20.39 14.26 34.02 3.18
2274 3805 2.496070 CAGGGAATGAAGTCGACTACCA 59.504 50.000 20.39 19.44 0.00 3.25
2275 3806 3.056107 CAGGGAATGAAGTCGACTACCAA 60.056 47.826 20.39 5.17 0.00 3.67
2276 3807 3.581332 AGGGAATGAAGTCGACTACCAAA 59.419 43.478 20.39 3.26 0.00 3.28
2277 3808 4.041198 AGGGAATGAAGTCGACTACCAAAA 59.959 41.667 20.39 1.39 0.00 2.44
2278 3809 4.153655 GGGAATGAAGTCGACTACCAAAAC 59.846 45.833 20.39 13.74 0.00 2.43
2279 3810 4.753107 GGAATGAAGTCGACTACCAAAACA 59.247 41.667 20.39 10.59 0.00 2.83
2280 3811 5.411669 GGAATGAAGTCGACTACCAAAACAT 59.588 40.000 20.39 12.23 0.00 2.71
2281 3812 6.072673 GGAATGAAGTCGACTACCAAAACATT 60.073 38.462 20.39 18.59 0.00 2.71
2282 3813 6.877611 ATGAAGTCGACTACCAAAACATTT 57.122 33.333 20.39 0.00 0.00 2.32
2283 3814 6.295039 TGAAGTCGACTACCAAAACATTTC 57.705 37.500 20.39 8.47 0.00 2.17
2284 3815 5.818336 TGAAGTCGACTACCAAAACATTTCA 59.182 36.000 20.39 11.12 0.00 2.69
2285 3816 6.485313 TGAAGTCGACTACCAAAACATTTCAT 59.515 34.615 20.39 0.00 0.00 2.57
2286 3817 6.877611 AGTCGACTACCAAAACATTTCATT 57.122 33.333 18.46 0.00 0.00 2.57
2287 3818 7.272037 AGTCGACTACCAAAACATTTCATTT 57.728 32.000 18.46 0.00 0.00 2.32
2288 3819 7.360361 AGTCGACTACCAAAACATTTCATTTC 58.640 34.615 18.46 0.00 0.00 2.17
2289 3820 7.012894 AGTCGACTACCAAAACATTTCATTTCA 59.987 33.333 18.46 0.00 0.00 2.69
2290 3821 7.807907 GTCGACTACCAAAACATTTCATTTCAT 59.192 33.333 8.70 0.00 0.00 2.57
2291 3822 8.020819 TCGACTACCAAAACATTTCATTTCATC 58.979 33.333 0.00 0.00 0.00 2.92
2292 3823 8.023128 CGACTACCAAAACATTTCATTTCATCT 58.977 33.333 0.00 0.00 0.00 2.90
2299 3830 9.749490 CAAAACATTTCATTTCATCTATTGTGC 57.251 29.630 0.00 0.00 0.00 4.57
2300 3831 9.715121 AAAACATTTCATTTCATCTATTGTGCT 57.285 25.926 0.00 0.00 0.00 4.40
2301 3832 8.922058 AACATTTCATTTCATCTATTGTGCTC 57.078 30.769 0.00 0.00 0.00 4.26
2302 3833 8.058667 ACATTTCATTTCATCTATTGTGCTCA 57.941 30.769 0.00 0.00 0.00 4.26
2303 3834 8.525316 ACATTTCATTTCATCTATTGTGCTCAA 58.475 29.630 3.31 3.31 37.98 3.02
2304 3835 9.020813 CATTTCATTTCATCTATTGTGCTCAAG 57.979 33.333 7.35 0.00 36.97 3.02
2305 3836 7.692460 TTCATTTCATCTATTGTGCTCAAGT 57.308 32.000 7.35 0.00 36.97 3.16
2306 3837 8.791327 TTCATTTCATCTATTGTGCTCAAGTA 57.209 30.769 7.35 0.24 36.97 2.24
2307 3838 8.791327 TCATTTCATCTATTGTGCTCAAGTAA 57.209 30.769 7.35 0.00 36.97 2.24
2308 3839 9.230122 TCATTTCATCTATTGTGCTCAAGTAAA 57.770 29.630 7.35 2.42 36.97 2.01
2309 3840 9.282247 CATTTCATCTATTGTGCTCAAGTAAAC 57.718 33.333 7.35 0.00 36.97 2.01
2310 3841 7.977789 TTCATCTATTGTGCTCAAGTAAACA 57.022 32.000 7.35 0.00 36.97 2.83
2311 3842 7.364522 TCATCTATTGTGCTCAAGTAAACAC 57.635 36.000 7.35 0.00 36.97 3.32
2312 3843 6.934083 TCATCTATTGTGCTCAAGTAAACACA 59.066 34.615 7.35 0.00 41.04 3.72
2313 3844 6.785488 TCTATTGTGCTCAAGTAAACACAG 57.215 37.500 7.35 0.00 43.34 3.66
2314 3845 6.521162 TCTATTGTGCTCAAGTAAACACAGA 58.479 36.000 7.35 0.00 43.34 3.41
2315 3846 5.679734 ATTGTGCTCAAGTAAACACAGAG 57.320 39.130 7.35 0.00 43.34 3.35
2316 3847 4.400529 TGTGCTCAAGTAAACACAGAGA 57.599 40.909 0.00 0.00 38.07 3.10
2317 3848 4.119862 TGTGCTCAAGTAAACACAGAGAC 58.880 43.478 0.00 0.00 38.07 3.36
2318 3849 3.182572 GTGCTCAAGTAAACACAGAGACG 59.817 47.826 0.00 0.00 33.23 4.18
2319 3850 2.731976 GCTCAAGTAAACACAGAGACGG 59.268 50.000 0.00 0.00 0.00 4.79
2320 3851 3.552273 GCTCAAGTAAACACAGAGACGGA 60.552 47.826 0.00 0.00 0.00 4.69
2321 3852 4.617959 CTCAAGTAAACACAGAGACGGAA 58.382 43.478 0.00 0.00 0.00 4.30
2322 3853 4.365723 TCAAGTAAACACAGAGACGGAAC 58.634 43.478 0.00 0.00 0.00 3.62
2323 3854 3.382048 AGTAAACACAGAGACGGAACC 57.618 47.619 0.00 0.00 0.00 3.62
2324 3855 2.056577 GTAAACACAGAGACGGAACCG 58.943 52.381 11.83 11.83 46.03 4.44
2325 3856 0.748450 AAACACAGAGACGGAACCGA 59.252 50.000 20.14 0.00 42.83 4.69
2326 3857 0.966920 AACACAGAGACGGAACCGAT 59.033 50.000 20.14 7.77 42.83 4.18
2327 3858 0.526662 ACACAGAGACGGAACCGATC 59.473 55.000 20.14 15.62 42.83 3.69
2328 3859 0.179134 CACAGAGACGGAACCGATCC 60.179 60.000 20.14 8.30 45.57 3.36
2351 3882 6.528537 CATTTTAGTGGAATGGAACCATGA 57.471 37.500 7.12 0.00 39.69 3.07
2352 3883 7.116075 CATTTTAGTGGAATGGAACCATGAT 57.884 36.000 7.12 0.00 39.69 2.45
2353 3884 8.236585 CATTTTAGTGGAATGGAACCATGATA 57.763 34.615 7.12 0.00 39.69 2.15
2354 3885 8.863086 CATTTTAGTGGAATGGAACCATGATAT 58.137 33.333 7.12 0.00 39.69 1.63
2355 3886 8.837099 TTTTAGTGGAATGGAACCATGATATT 57.163 30.769 7.12 0.00 39.69 1.28
2356 3887 8.463930 TTTAGTGGAATGGAACCATGATATTC 57.536 34.615 7.12 1.85 39.69 1.75
2357 3888 5.388654 AGTGGAATGGAACCATGATATTCC 58.611 41.667 7.12 10.80 44.38 3.01
2364 3895 5.712152 GGAACCATGATATTCCATTCCAC 57.288 43.478 14.88 0.00 43.40 4.02
2365 3896 5.388654 GGAACCATGATATTCCATTCCACT 58.611 41.667 14.88 0.00 43.40 4.00
2366 3897 5.835280 GGAACCATGATATTCCATTCCACTT 59.165 40.000 14.88 0.00 43.40 3.16
2367 3898 6.015940 GGAACCATGATATTCCATTCCACTTC 60.016 42.308 14.88 0.00 43.40 3.01
2368 3899 5.065914 ACCATGATATTCCATTCCACTTCG 58.934 41.667 0.00 0.00 0.00 3.79
2369 3900 5.065914 CCATGATATTCCATTCCACTTCGT 58.934 41.667 0.00 0.00 0.00 3.85
2370 3901 5.532406 CCATGATATTCCATTCCACTTCGTT 59.468 40.000 0.00 0.00 0.00 3.85
2371 3902 6.293626 CCATGATATTCCATTCCACTTCGTTC 60.294 42.308 0.00 0.00 0.00 3.95
2372 3903 5.123227 TGATATTCCATTCCACTTCGTTCC 58.877 41.667 0.00 0.00 0.00 3.62
2373 3904 1.803334 TTCCATTCCACTTCGTTCCG 58.197 50.000 0.00 0.00 0.00 4.30
2374 3905 0.672401 TCCATTCCACTTCGTTCCGC 60.672 55.000 0.00 0.00 0.00 5.54
2375 3906 0.953471 CCATTCCACTTCGTTCCGCA 60.953 55.000 0.00 0.00 0.00 5.69
2376 3907 0.871722 CATTCCACTTCGTTCCGCAA 59.128 50.000 0.00 0.00 0.00 4.85
2377 3908 0.872388 ATTCCACTTCGTTCCGCAAC 59.128 50.000 0.00 0.00 0.00 4.17
2378 3909 1.161563 TTCCACTTCGTTCCGCAACC 61.162 55.000 0.00 0.00 0.00 3.77
2379 3910 1.890041 CCACTTCGTTCCGCAACCA 60.890 57.895 0.00 0.00 0.00 3.67
2380 3911 1.440938 CCACTTCGTTCCGCAACCAA 61.441 55.000 0.00 0.00 0.00 3.67
2381 3912 0.378962 CACTTCGTTCCGCAACCAAA 59.621 50.000 0.00 0.00 0.00 3.28
2382 3913 0.379316 ACTTCGTTCCGCAACCAAAC 59.621 50.000 0.00 0.00 0.00 2.93
2383 3914 0.378962 CTTCGTTCCGCAACCAAACA 59.621 50.000 0.00 0.00 0.00 2.83
2384 3915 0.099082 TTCGTTCCGCAACCAAACAC 59.901 50.000 0.00 0.00 0.00 3.32
2385 3916 1.025113 TCGTTCCGCAACCAAACACA 61.025 50.000 0.00 0.00 0.00 3.72
2386 3917 0.863957 CGTTCCGCAACCAAACACAC 60.864 55.000 0.00 0.00 0.00 3.82
2387 3918 0.526739 GTTCCGCAACCAAACACACC 60.527 55.000 0.00 0.00 0.00 4.16
2388 3919 1.668101 TTCCGCAACCAAACACACCC 61.668 55.000 0.00 0.00 0.00 4.61
2413 3944 0.602905 CCAACCAAGAGGACCGACAC 60.603 60.000 0.00 0.00 38.69 3.67
2472 4003 7.390718 AGTGGGATTACTTTAGCTTACACTTTG 59.609 37.037 0.00 0.00 32.11 2.77
2512 4043 4.650972 AAGGGTGCTCCAATAGTAACAA 57.349 40.909 7.20 0.00 38.24 2.83
2523 4054 7.095187 GCTCCAATAGTAACAATCTAATTCGGG 60.095 40.741 0.00 0.00 0.00 5.14
2525 4056 7.713507 TCCAATAGTAACAATCTAATTCGGGTG 59.286 37.037 0.00 0.00 0.00 4.61
2527 4058 8.335356 CAATAGTAACAATCTAATTCGGGTGTG 58.665 37.037 0.00 0.00 0.00 3.82
2543 4074 2.832129 GGTGTGTCTCCATCTGTCCTTA 59.168 50.000 0.00 0.00 0.00 2.69
2549 4080 4.174762 GTCTCCATCTGTCCTTAACGTTC 58.825 47.826 2.82 0.00 0.00 3.95
2565 4096 2.163613 ACGTTCTGTATCTCATGACGCA 59.836 45.455 0.00 0.00 37.58 5.24
2566 4097 3.181486 ACGTTCTGTATCTCATGACGCAT 60.181 43.478 0.00 0.00 37.58 4.73
2567 4098 3.181178 CGTTCTGTATCTCATGACGCATG 59.819 47.826 11.97 11.97 42.60 4.06
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 4.825252 CGGTCTAAACGGGCCGGG 62.825 72.222 31.78 16.63 40.45 5.73
79 80 3.744719 GTTCTTTTCGGGCCGGCC 61.745 66.667 38.57 38.57 0.00 6.13
80 81 4.097863 CGTTCTTTTCGGGCCGGC 62.098 66.667 27.98 21.18 0.00 6.13
81 82 3.428282 CCGTTCTTTTCGGGCCGG 61.428 66.667 27.98 10.15 43.68 6.13
82 83 4.097863 GCCGTTCTTTTCGGGCCG 62.098 66.667 22.51 22.51 46.90 6.13
85 86 1.248101 AATGGGCCGTTCTTTTCGGG 61.248 55.000 4.80 0.00 46.90 5.14
87 88 1.668628 CCAAATGGGCCGTTCTTTTCG 60.669 52.381 12.25 0.00 0.00 3.46
88 89 2.078849 CCAAATGGGCCGTTCTTTTC 57.921 50.000 12.25 0.00 0.00 2.29
99 100 2.363306 TGTATAGCTGGCCAAATGGG 57.637 50.000 7.01 0.00 40.85 4.00
100 101 3.290710 ACTTGTATAGCTGGCCAAATGG 58.709 45.455 7.01 0.00 38.53 3.16
101 102 4.023707 GCTACTTGTATAGCTGGCCAAATG 60.024 45.833 7.01 0.00 43.62 2.32
102 103 4.137543 GCTACTTGTATAGCTGGCCAAAT 58.862 43.478 7.01 3.30 43.62 2.32
103 104 3.541632 GCTACTTGTATAGCTGGCCAAA 58.458 45.455 7.01 0.00 43.62 3.28
104 105 2.158813 GGCTACTTGTATAGCTGGCCAA 60.159 50.000 7.01 0.00 45.81 4.52
105 106 1.416401 GGCTACTTGTATAGCTGGCCA 59.584 52.381 4.71 4.71 45.81 5.36
106 107 1.416401 TGGCTACTTGTATAGCTGGCC 59.584 52.381 0.00 0.00 45.81 5.36
107 108 2.484889 GTGGCTACTTGTATAGCTGGC 58.515 52.381 0.00 0.00 45.81 4.85
108 109 2.545952 CCGTGGCTACTTGTATAGCTGG 60.546 54.545 0.00 1.92 45.81 4.85
109 110 2.361119 TCCGTGGCTACTTGTATAGCTG 59.639 50.000 0.00 0.00 45.81 4.24
110 111 2.361438 GTCCGTGGCTACTTGTATAGCT 59.639 50.000 0.00 0.00 45.81 3.32
111 112 2.100252 TGTCCGTGGCTACTTGTATAGC 59.900 50.000 0.00 0.00 45.82 2.97
112 113 3.630769 TCTGTCCGTGGCTACTTGTATAG 59.369 47.826 0.00 0.00 0.00 1.31
113 114 3.379372 GTCTGTCCGTGGCTACTTGTATA 59.621 47.826 0.00 0.00 0.00 1.47
114 115 2.165845 GTCTGTCCGTGGCTACTTGTAT 59.834 50.000 0.00 0.00 0.00 2.29
115 116 1.542915 GTCTGTCCGTGGCTACTTGTA 59.457 52.381 0.00 0.00 0.00 2.41
116 117 0.317479 GTCTGTCCGTGGCTACTTGT 59.683 55.000 0.00 0.00 0.00 3.16
117 118 0.732880 CGTCTGTCCGTGGCTACTTG 60.733 60.000 0.00 0.00 0.00 3.16
118 119 0.892358 TCGTCTGTCCGTGGCTACTT 60.892 55.000 0.00 0.00 0.00 2.24
119 120 0.892358 TTCGTCTGTCCGTGGCTACT 60.892 55.000 0.00 0.00 0.00 2.57
120 121 0.038892 TTTCGTCTGTCCGTGGCTAC 60.039 55.000 0.00 0.00 0.00 3.58
121 122 0.675083 TTTTCGTCTGTCCGTGGCTA 59.325 50.000 0.00 0.00 0.00 3.93
122 123 0.179067 TTTTTCGTCTGTCCGTGGCT 60.179 50.000 0.00 0.00 0.00 4.75
123 124 2.313267 TTTTTCGTCTGTCCGTGGC 58.687 52.632 0.00 0.00 0.00 5.01
142 143 4.485163 CGCCGGATGAGAAAAAGATTTTT 58.515 39.130 5.05 3.03 42.60 1.94
143 144 3.673323 GCGCCGGATGAGAAAAAGATTTT 60.673 43.478 5.05 0.00 0.00 1.82
144 145 2.159379 GCGCCGGATGAGAAAAAGATTT 60.159 45.455 5.05 0.00 0.00 2.17
145 146 1.401905 GCGCCGGATGAGAAAAAGATT 59.598 47.619 5.05 0.00 0.00 2.40
146 147 1.017387 GCGCCGGATGAGAAAAAGAT 58.983 50.000 5.05 0.00 0.00 2.40
147 148 1.024579 GGCGCCGGATGAGAAAAAGA 61.025 55.000 12.58 0.00 0.00 2.52
148 149 1.429423 GGCGCCGGATGAGAAAAAG 59.571 57.895 12.58 0.00 0.00 2.27
149 150 2.395360 CGGCGCCGGATGAGAAAAA 61.395 57.895 40.50 0.00 35.56 1.94
150 151 2.817834 CGGCGCCGGATGAGAAAA 60.818 61.111 40.50 0.00 35.56 2.29
164 165 2.879813 TTTCGGGAATACAGGGCGGC 62.880 60.000 0.00 0.00 0.00 6.53
165 166 1.093496 GTTTCGGGAATACAGGGCGG 61.093 60.000 0.00 0.00 0.00 6.13
166 167 0.107848 AGTTTCGGGAATACAGGGCG 60.108 55.000 0.00 0.00 0.00 6.13
167 168 1.379527 CAGTTTCGGGAATACAGGGC 58.620 55.000 0.00 0.00 0.00 5.19
168 169 1.379527 GCAGTTTCGGGAATACAGGG 58.620 55.000 0.00 0.00 0.00 4.45
169 170 1.379527 GGCAGTTTCGGGAATACAGG 58.620 55.000 0.00 0.00 0.00 4.00
170 171 1.065418 AGGGCAGTTTCGGGAATACAG 60.065 52.381 0.00 0.00 0.00 2.74
171 172 0.988832 AGGGCAGTTTCGGGAATACA 59.011 50.000 0.00 0.00 0.00 2.29
172 173 1.664873 GAGGGCAGTTTCGGGAATAC 58.335 55.000 0.00 0.00 0.00 1.89
173 174 0.177141 CGAGGGCAGTTTCGGGAATA 59.823 55.000 0.00 0.00 33.39 1.75
174 175 1.078426 CGAGGGCAGTTTCGGGAAT 60.078 57.895 0.00 0.00 33.39 3.01
175 176 2.345991 CGAGGGCAGTTTCGGGAA 59.654 61.111 0.00 0.00 33.39 3.97
179 180 0.108138 AGATTCCGAGGGCAGTTTCG 60.108 55.000 0.00 0.00 36.62 3.46
180 181 1.208293 AGAGATTCCGAGGGCAGTTTC 59.792 52.381 0.00 0.00 0.00 2.78
181 182 1.208293 GAGAGATTCCGAGGGCAGTTT 59.792 52.381 0.00 0.00 0.00 2.66
182 183 0.827368 GAGAGATTCCGAGGGCAGTT 59.173 55.000 0.00 0.00 0.00 3.16
183 184 1.045911 GGAGAGATTCCGAGGGCAGT 61.046 60.000 0.00 0.00 35.91 4.40
184 185 1.745264 GGAGAGATTCCGAGGGCAG 59.255 63.158 0.00 0.00 35.91 4.85
185 186 3.956377 GGAGAGATTCCGAGGGCA 58.044 61.111 0.00 0.00 35.91 5.36
192 193 0.179070 GAGCGTTGGGGAGAGATTCC 60.179 60.000 0.00 0.00 46.00 3.01
193 194 0.528684 CGAGCGTTGGGGAGAGATTC 60.529 60.000 0.00 0.00 0.00 2.52
194 195 1.517832 CGAGCGTTGGGGAGAGATT 59.482 57.895 0.00 0.00 0.00 2.40
195 196 3.082579 GCGAGCGTTGGGGAGAGAT 62.083 63.158 0.00 0.00 0.00 2.75
196 197 3.760035 GCGAGCGTTGGGGAGAGA 61.760 66.667 0.00 0.00 0.00 3.10
197 198 4.821589 GGCGAGCGTTGGGGAGAG 62.822 72.222 0.00 0.00 0.00 3.20
213 214 3.237741 GATGGGAGGGAGCGAGGG 61.238 72.222 0.00 0.00 0.00 4.30
224 225 1.709578 CGAGGAAGATGAGGATGGGA 58.290 55.000 0.00 0.00 0.00 4.37
225 226 0.034616 GCGAGGAAGATGAGGATGGG 59.965 60.000 0.00 0.00 0.00 4.00
499 505 1.453928 GGTAGCAACCATGGAGGCC 60.454 63.158 21.47 9.14 45.98 5.19
529 541 2.495155 TCATGTCTGACCCATGGTTG 57.505 50.000 11.73 0.00 40.07 3.77
534 546 4.225942 ACACAGTATTCATGTCTGACCCAT 59.774 41.667 5.17 0.00 33.93 4.00
556 568 8.604035 ACACATACATCAATACAATCTTTCGAC 58.396 33.333 0.00 0.00 0.00 4.20
596 608 6.865205 ACCACATCGAGTAGTACAAAACTAAC 59.135 38.462 2.52 0.00 42.37 2.34
599 611 5.464030 ACCACATCGAGTAGTACAAAACT 57.536 39.130 2.52 0.00 42.62 2.66
600 612 7.642071 TTTACCACATCGAGTAGTACAAAAC 57.358 36.000 2.52 0.00 0.00 2.43
601 613 8.714179 CATTTTACCACATCGAGTAGTACAAAA 58.286 33.333 2.52 0.00 0.00 2.44
603 615 7.380536 ACATTTTACCACATCGAGTAGTACAA 58.619 34.615 2.52 0.00 0.00 2.41
604 616 6.927416 ACATTTTACCACATCGAGTAGTACA 58.073 36.000 2.52 0.00 0.00 2.90
614 626 3.936453 TCGGCTGTACATTTTACCACATC 59.064 43.478 0.00 0.00 0.00 3.06
615 627 3.687698 GTCGGCTGTACATTTTACCACAT 59.312 43.478 0.00 0.00 0.00 3.21
658 670 1.538512 CAGAGGAACACCACTGCAATG 59.461 52.381 0.00 0.00 36.11 2.82
671 683 5.808366 AAGAACTGTGTACATCAGAGGAA 57.192 39.130 23.52 0.00 41.07 3.36
672 684 5.105716 GCTAAGAACTGTGTACATCAGAGGA 60.106 44.000 23.52 9.43 41.07 3.71
673 685 5.105554 AGCTAAGAACTGTGTACATCAGAGG 60.106 44.000 23.52 12.00 41.07 3.69
674 686 5.960113 AGCTAAGAACTGTGTACATCAGAG 58.040 41.667 23.52 14.68 42.26 3.35
675 687 5.476945 TGAGCTAAGAACTGTGTACATCAGA 59.523 40.000 23.52 7.57 36.81 3.27
676 688 5.574830 GTGAGCTAAGAACTGTGTACATCAG 59.425 44.000 18.18 18.18 38.68 2.90
677 689 5.243954 AGTGAGCTAAGAACTGTGTACATCA 59.756 40.000 0.00 0.00 0.00 3.07
678 690 5.715070 AGTGAGCTAAGAACTGTGTACATC 58.285 41.667 0.00 0.00 0.00 3.06
679 691 5.620205 CGAGTGAGCTAAGAACTGTGTACAT 60.620 44.000 0.00 0.00 0.00 2.29
680 692 4.320275 CGAGTGAGCTAAGAACTGTGTACA 60.320 45.833 0.00 0.00 0.00 2.90
681 693 4.159857 CGAGTGAGCTAAGAACTGTGTAC 58.840 47.826 0.00 0.00 0.00 2.90
682 694 3.819337 ACGAGTGAGCTAAGAACTGTGTA 59.181 43.478 0.00 0.00 0.00 2.90
688 700 7.542824 AGAAAGATAAACGAGTGAGCTAAGAAC 59.457 37.037 0.00 0.00 0.00 3.01
695 707 5.403246 TCAGAGAAAGATAAACGAGTGAGC 58.597 41.667 0.00 0.00 0.00 4.26
723 735 7.110155 ACAAACCGATATCCAGAAATAACACT 58.890 34.615 0.00 0.00 0.00 3.55
726 738 7.568861 CGCTACAAACCGATATCCAGAAATAAC 60.569 40.741 0.00 0.00 0.00 1.89
742 754 1.156736 ACAGTGATGCGCTACAAACC 58.843 50.000 9.73 0.00 0.00 3.27
768 780 1.003116 CACTGCGGCAGCTAATTGATC 60.003 52.381 28.80 0.00 45.42 2.92
772 784 2.409870 GGCACTGCGGCAGCTAATT 61.410 57.895 28.80 7.08 45.42 1.40
783 795 4.099170 CAGCTTCAGCGGCACTGC 62.099 66.667 1.45 0.78 46.76 4.40
810 828 7.009174 CGTCTATTTTGGCAATCACATAAAACC 59.991 37.037 0.00 0.00 0.00 3.27
824 842 1.733360 TGGTTACGCGTCTATTTTGGC 59.267 47.619 18.63 0.00 0.00 4.52
904 932 0.611714 TCCCTACGGGCAGAAGTTTC 59.388 55.000 0.00 0.00 43.94 2.78
908 936 0.745468 GTACTCCCTACGGGCAGAAG 59.255 60.000 0.00 0.00 43.94 2.85
916 944 7.228308 AGCTAGTTAAATACAGTACTCCCTACG 59.772 40.741 0.00 0.00 0.00 3.51
927 955 7.764443 TGTTTCCAGCTAGCTAGTTAAATACAG 59.236 37.037 18.86 0.00 0.00 2.74
928 956 7.617225 TGTTTCCAGCTAGCTAGTTAAATACA 58.383 34.615 18.86 15.52 0.00 2.29
967 1042 3.132111 GTCTCCCTTTTGTCTTTTGGCAA 59.868 43.478 0.00 0.00 42.96 4.52
976 1106 2.289444 TGATCCGTGTCTCCCTTTTGTC 60.289 50.000 0.00 0.00 0.00 3.18
1011 1141 1.539869 AGACCATCCCAGTGCCTGT 60.540 57.895 2.18 0.00 0.00 4.00
1029 2325 3.770040 CGCATCACCTCCCCGTCA 61.770 66.667 0.00 0.00 0.00 4.35
1050 2346 0.968393 GGGAGCAGGTCTTCGACTCT 60.968 60.000 0.00 0.00 32.47 3.24
1162 2462 7.871463 GTGAGTAGACAAAGTAAAGTATGTGGT 59.129 37.037 0.00 0.00 0.00 4.16
1175 2475 6.364706 GTCTGAACATGAGTGAGTAGACAAAG 59.635 42.308 0.00 0.00 34.83 2.77
1176 2476 6.183360 TGTCTGAACATGAGTGAGTAGACAAA 60.183 38.462 0.00 0.00 38.05 2.83
1193 2496 6.094048 ACAAATAGGTGTATGCATGTCTGAAC 59.906 38.462 10.16 0.00 0.00 3.18
1199 2502 4.941263 ACGAACAAATAGGTGTATGCATGT 59.059 37.500 10.16 0.00 0.00 3.21
1211 2514 4.782195 GCGGCAGTATCAACGAACAAATAG 60.782 45.833 0.00 0.00 0.00 1.73
1220 2523 1.447838 ACAGGCGGCAGTATCAACG 60.448 57.895 13.08 0.00 0.00 4.10
1234 2543 3.144506 AGAACAAGATTCACAGCACAGG 58.855 45.455 0.00 0.00 0.00 4.00
1236 2545 5.125257 TGAAAAGAACAAGATTCACAGCACA 59.875 36.000 0.00 0.00 0.00 4.57
1242 2551 7.802251 CAGAGACATGAAAAGAACAAGATTCAC 59.198 37.037 0.00 0.00 34.88 3.18
1244 2553 7.869800 ACAGAGACATGAAAAGAACAAGATTC 58.130 34.615 0.00 0.00 0.00 2.52
1245 2554 7.814264 ACAGAGACATGAAAAGAACAAGATT 57.186 32.000 0.00 0.00 0.00 2.40
1246 2555 9.160496 GATACAGAGACATGAAAAGAACAAGAT 57.840 33.333 0.00 0.00 0.00 2.40
1247 2556 8.370940 AGATACAGAGACATGAAAAGAACAAGA 58.629 33.333 0.00 0.00 0.00 3.02
1248 2557 8.545229 AGATACAGAGACATGAAAAGAACAAG 57.455 34.615 0.00 0.00 0.00 3.16
1250 2559 9.809096 GATAGATACAGAGACATGAAAAGAACA 57.191 33.333 0.00 0.00 0.00 3.18
1257 2566 9.799106 TCATGTAGATAGATACAGAGACATGAA 57.201 33.333 10.94 0.00 45.29 2.57
1283 2592 9.817809 AACACTCGATACTGTATTCATACAAAT 57.182 29.630 1.22 0.00 42.20 2.32
1287 2596 9.383462 CAGTAACACTCGATACTGTATTCATAC 57.617 37.037 13.44 3.53 41.31 2.39
1293 2602 4.037684 GGCCAGTAACACTCGATACTGTAT 59.962 45.833 18.06 0.00 43.47 2.29
1297 2606 1.404391 CGGCCAGTAACACTCGATACT 59.596 52.381 2.24 0.00 31.34 2.12
1300 2609 0.172803 GACGGCCAGTAACACTCGAT 59.827 55.000 2.24 0.00 0.00 3.59
1313 2622 4.445545 CGCTTGCTTTCGACGGCC 62.446 66.667 0.00 0.00 0.00 6.13
1330 2639 5.699458 TCCAAGTAATTTCAAGGTTCGAGTC 59.301 40.000 0.00 0.00 0.00 3.36
1346 2655 7.501225 GCAGGGTTAGCTATTAAATCCAAGTAA 59.499 37.037 0.00 0.00 0.00 2.24
1349 2658 5.827797 TGCAGGGTTAGCTATTAAATCCAAG 59.172 40.000 0.00 0.00 0.00 3.61
1353 2662 5.823045 ACACTGCAGGGTTAGCTATTAAATC 59.177 40.000 18.08 0.00 0.00 2.17
1357 2666 6.126883 ACAATACACTGCAGGGTTAGCTATTA 60.127 38.462 29.66 6.67 0.00 0.98
1358 2667 5.126067 CAATACACTGCAGGGTTAGCTATT 58.874 41.667 29.66 17.40 0.00 1.73
1359 2668 4.164221 ACAATACACTGCAGGGTTAGCTAT 59.836 41.667 29.66 11.61 0.00 2.97
1360 2669 3.517901 ACAATACACTGCAGGGTTAGCTA 59.482 43.478 29.66 9.32 0.00 3.32
1384 2693 9.786105 GCATATATATATGACCGATCAGATGAG 57.214 37.037 29.13 4.60 42.05 2.90
1391 2700 7.316640 GGACCTGCATATATATATGACCGATC 58.683 42.308 29.13 19.38 42.05 3.69
1450 2769 1.332889 TGCAGATCGCTCCACAGGAT 61.333 55.000 10.16 0.00 43.06 3.24
1568 2887 4.697514 CCTCCAAGATACATGTACCACTG 58.302 47.826 7.96 0.00 0.00 3.66
1569 2888 3.134804 GCCTCCAAGATACATGTACCACT 59.865 47.826 7.96 5.55 0.00 4.00
1570 2889 3.467803 GCCTCCAAGATACATGTACCAC 58.532 50.000 7.96 3.23 0.00 4.16
1627 2946 1.795768 GACAAGGTGCAGATGAACGA 58.204 50.000 0.00 0.00 0.00 3.85
1629 2948 1.195448 CACGACAAGGTGCAGATGAAC 59.805 52.381 0.00 0.00 0.00 3.18
1640 2959 0.962489 ACCTCTCTCACACGACAAGG 59.038 55.000 0.00 0.00 0.00 3.61
1755 3074 3.371063 CAGCAGCAACAGCCAGGG 61.371 66.667 0.00 0.00 0.00 4.45
1761 3080 0.461135 AAAACACCCAGCAGCAACAG 59.539 50.000 0.00 0.00 0.00 3.16
1835 3154 8.586744 AGAGGTACTAGTTTCAGACCTTTTTAG 58.413 37.037 14.17 0.00 41.55 1.85
1842 3161 4.082136 CACCAGAGGTACTAGTTTCAGACC 60.082 50.000 0.00 1.56 41.55 3.85
1847 3166 5.464030 TTGACACCAGAGGTACTAGTTTC 57.536 43.478 0.00 0.00 41.55 2.78
1881 3370 6.804677 TGCTCAACTATGCTTTTCTCAAAAA 58.195 32.000 0.00 0.00 33.42 1.94
1884 3373 6.389830 TTTGCTCAACTATGCTTTTCTCAA 57.610 33.333 0.00 0.00 0.00 3.02
1886 3375 5.397326 CCTTTGCTCAACTATGCTTTTCTC 58.603 41.667 0.00 0.00 0.00 2.87
1895 3426 2.350522 CGTCTGCCTTTGCTCAACTAT 58.649 47.619 0.00 0.00 38.71 2.12
2003 3534 4.516195 GCCGCTCGACCCCTCTTC 62.516 72.222 0.00 0.00 0.00 2.87
2134 3665 0.108709 TTGGTACGTACGGCATGGAC 60.109 55.000 21.06 7.12 0.00 4.02
2150 3681 2.224523 ACCACTCTACCACACACATTGG 60.225 50.000 0.00 0.00 40.32 3.16
2157 3688 0.535797 GCCCTACCACTCTACCACAC 59.464 60.000 0.00 0.00 0.00 3.82
2165 3696 0.462759 GATGCAGTGCCCTACCACTC 60.463 60.000 13.72 0.00 43.85 3.51
2223 3754 3.072476 CACACCCTAAAGGACAGAAAGGA 59.928 47.826 0.00 0.00 39.89 3.36
2227 3758 4.204012 CAAACACACCCTAAAGGACAGAA 58.796 43.478 0.00 0.00 39.89 3.02
2228 3759 3.434453 CCAAACACACCCTAAAGGACAGA 60.434 47.826 0.00 0.00 39.89 3.41
2229 3760 2.884639 CCAAACACACCCTAAAGGACAG 59.115 50.000 0.00 0.00 39.89 3.51
2230 3761 2.242708 ACCAAACACACCCTAAAGGACA 59.757 45.455 0.00 0.00 39.89 4.02
2231 3762 2.940158 ACCAAACACACCCTAAAGGAC 58.060 47.619 0.00 0.00 39.89 3.85
2232 3763 3.053544 TGAACCAAACACACCCTAAAGGA 60.054 43.478 0.00 0.00 39.89 3.36
2233 3764 3.292460 TGAACCAAACACACCCTAAAGG 58.708 45.455 0.00 0.00 43.78 3.11
2234 3765 3.317993 CCTGAACCAAACACACCCTAAAG 59.682 47.826 0.00 0.00 0.00 1.85
2235 3766 3.292460 CCTGAACCAAACACACCCTAAA 58.708 45.455 0.00 0.00 0.00 1.85
2236 3767 2.423660 CCCTGAACCAAACACACCCTAA 60.424 50.000 0.00 0.00 0.00 2.69
2237 3768 1.144093 CCCTGAACCAAACACACCCTA 59.856 52.381 0.00 0.00 0.00 3.53
2238 3769 0.106217 CCCTGAACCAAACACACCCT 60.106 55.000 0.00 0.00 0.00 4.34
2239 3770 0.106419 TCCCTGAACCAAACACACCC 60.106 55.000 0.00 0.00 0.00 4.61
2240 3771 1.770294 TTCCCTGAACCAAACACACC 58.230 50.000 0.00 0.00 0.00 4.16
2241 3772 2.955660 TCATTCCCTGAACCAAACACAC 59.044 45.455 0.00 0.00 0.00 3.82
2242 3773 3.304911 TCATTCCCTGAACCAAACACA 57.695 42.857 0.00 0.00 0.00 3.72
2243 3774 3.636764 ACTTCATTCCCTGAACCAAACAC 59.363 43.478 0.00 0.00 38.97 3.32
2244 3775 3.888930 GACTTCATTCCCTGAACCAAACA 59.111 43.478 0.00 0.00 38.97 2.83
2245 3776 3.058224 CGACTTCATTCCCTGAACCAAAC 60.058 47.826 0.00 0.00 38.97 2.93
2246 3777 3.146066 CGACTTCATTCCCTGAACCAAA 58.854 45.455 0.00 0.00 38.97 3.28
2247 3778 2.370519 TCGACTTCATTCCCTGAACCAA 59.629 45.455 0.00 0.00 38.97 3.67
2248 3779 1.974957 TCGACTTCATTCCCTGAACCA 59.025 47.619 0.00 0.00 38.97 3.67
2249 3780 2.028020 AGTCGACTTCATTCCCTGAACC 60.028 50.000 13.58 0.00 38.97 3.62
2250 3781 3.320673 AGTCGACTTCATTCCCTGAAC 57.679 47.619 13.58 0.00 38.97 3.18
2251 3782 3.194968 GGTAGTCGACTTCATTCCCTGAA 59.805 47.826 25.44 0.00 41.61 3.02
2252 3783 2.758979 GGTAGTCGACTTCATTCCCTGA 59.241 50.000 25.44 0.00 0.00 3.86
2253 3784 2.496070 TGGTAGTCGACTTCATTCCCTG 59.504 50.000 25.44 0.00 0.00 4.45
2254 3785 2.816411 TGGTAGTCGACTTCATTCCCT 58.184 47.619 25.44 0.00 0.00 4.20
2255 3786 3.604875 TTGGTAGTCGACTTCATTCCC 57.395 47.619 25.44 13.93 0.00 3.97
2256 3787 4.753107 TGTTTTGGTAGTCGACTTCATTCC 59.247 41.667 25.44 17.43 0.00 3.01
2257 3788 5.917541 TGTTTTGGTAGTCGACTTCATTC 57.082 39.130 25.44 14.41 0.00 2.67
2258 3789 6.877611 AATGTTTTGGTAGTCGACTTCATT 57.122 33.333 25.44 17.42 0.00 2.57
2259 3790 6.485313 TGAAATGTTTTGGTAGTCGACTTCAT 59.515 34.615 25.44 13.20 0.00 2.57
2260 3791 5.818336 TGAAATGTTTTGGTAGTCGACTTCA 59.182 36.000 25.44 18.99 0.00 3.02
2261 3792 6.295039 TGAAATGTTTTGGTAGTCGACTTC 57.705 37.500 25.44 18.88 0.00 3.01
2262 3793 6.877611 ATGAAATGTTTTGGTAGTCGACTT 57.122 33.333 25.44 8.09 0.00 3.01
2263 3794 6.877611 AATGAAATGTTTTGGTAGTCGACT 57.122 33.333 23.66 23.66 0.00 4.18
2264 3795 7.136119 TGAAATGAAATGTTTTGGTAGTCGAC 58.864 34.615 7.70 7.70 0.00 4.20
2265 3796 7.265647 TGAAATGAAATGTTTTGGTAGTCGA 57.734 32.000 0.00 0.00 0.00 4.20
2266 3797 8.023128 AGATGAAATGAAATGTTTTGGTAGTCG 58.977 33.333 0.00 0.00 0.00 4.18
2273 3804 9.749490 GCACAATAGATGAAATGAAATGTTTTG 57.251 29.630 0.00 0.00 0.00 2.44
2274 3805 9.715121 AGCACAATAGATGAAATGAAATGTTTT 57.285 25.926 0.00 0.00 0.00 2.43
2275 3806 9.362539 GAGCACAATAGATGAAATGAAATGTTT 57.637 29.630 0.00 0.00 0.00 2.83
2276 3807 8.525316 TGAGCACAATAGATGAAATGAAATGTT 58.475 29.630 0.00 0.00 0.00 2.71
2277 3808 8.058667 TGAGCACAATAGATGAAATGAAATGT 57.941 30.769 0.00 0.00 0.00 2.71
2278 3809 8.920509 TTGAGCACAATAGATGAAATGAAATG 57.079 30.769 0.00 0.00 0.00 2.32
2279 3810 8.746530 ACTTGAGCACAATAGATGAAATGAAAT 58.253 29.630 0.00 0.00 35.37 2.17
2280 3811 8.114331 ACTTGAGCACAATAGATGAAATGAAA 57.886 30.769 0.00 0.00 35.37 2.69
2281 3812 7.692460 ACTTGAGCACAATAGATGAAATGAA 57.308 32.000 0.00 0.00 35.37 2.57
2282 3813 8.791327 TTACTTGAGCACAATAGATGAAATGA 57.209 30.769 0.00 0.00 35.37 2.57
2283 3814 9.282247 GTTTACTTGAGCACAATAGATGAAATG 57.718 33.333 0.00 0.00 35.37 2.32
2284 3815 9.013229 TGTTTACTTGAGCACAATAGATGAAAT 57.987 29.630 0.00 0.00 35.37 2.17
2285 3816 8.289618 GTGTTTACTTGAGCACAATAGATGAAA 58.710 33.333 0.00 0.00 35.37 2.69
2286 3817 7.443879 TGTGTTTACTTGAGCACAATAGATGAA 59.556 33.333 0.00 0.00 38.67 2.57
2287 3818 6.934083 TGTGTTTACTTGAGCACAATAGATGA 59.066 34.615 0.00 0.00 38.67 2.92
2288 3819 7.118245 TCTGTGTTTACTTGAGCACAATAGATG 59.882 37.037 0.00 0.00 40.67 2.90
2289 3820 7.161404 TCTGTGTTTACTTGAGCACAATAGAT 58.839 34.615 0.00 0.00 40.67 1.98
2290 3821 6.521162 TCTGTGTTTACTTGAGCACAATAGA 58.479 36.000 0.00 0.00 40.67 1.98
2291 3822 6.646653 TCTCTGTGTTTACTTGAGCACAATAG 59.353 38.462 0.00 0.00 40.67 1.73
2292 3823 6.423905 GTCTCTGTGTTTACTTGAGCACAATA 59.576 38.462 0.00 0.00 40.67 1.90
2293 3824 5.237344 GTCTCTGTGTTTACTTGAGCACAAT 59.763 40.000 0.00 0.00 40.67 2.71
2294 3825 4.570772 GTCTCTGTGTTTACTTGAGCACAA 59.429 41.667 0.00 0.00 40.67 3.33
2295 3826 4.119862 GTCTCTGTGTTTACTTGAGCACA 58.880 43.478 0.00 0.00 39.21 4.57
2296 3827 3.182572 CGTCTCTGTGTTTACTTGAGCAC 59.817 47.826 0.00 0.00 32.33 4.40
2297 3828 3.381045 CGTCTCTGTGTTTACTTGAGCA 58.619 45.455 0.00 0.00 32.33 4.26
2298 3829 2.731976 CCGTCTCTGTGTTTACTTGAGC 59.268 50.000 0.00 0.00 32.33 4.26
2299 3830 4.238761 TCCGTCTCTGTGTTTACTTGAG 57.761 45.455 0.00 0.00 33.00 3.02
2300 3831 4.365723 GTTCCGTCTCTGTGTTTACTTGA 58.634 43.478 0.00 0.00 0.00 3.02
2301 3832 3.493503 GGTTCCGTCTCTGTGTTTACTTG 59.506 47.826 0.00 0.00 0.00 3.16
2302 3833 3.725490 GGTTCCGTCTCTGTGTTTACTT 58.275 45.455 0.00 0.00 0.00 2.24
2303 3834 2.288030 CGGTTCCGTCTCTGTGTTTACT 60.288 50.000 2.82 0.00 0.00 2.24
2304 3835 2.056577 CGGTTCCGTCTCTGTGTTTAC 58.943 52.381 2.82 0.00 0.00 2.01
2305 3836 1.955778 TCGGTTCCGTCTCTGTGTTTA 59.044 47.619 11.04 0.00 0.00 2.01
2306 3837 0.748450 TCGGTTCCGTCTCTGTGTTT 59.252 50.000 11.04 0.00 0.00 2.83
2307 3838 0.966920 ATCGGTTCCGTCTCTGTGTT 59.033 50.000 11.04 0.00 0.00 3.32
2308 3839 0.526662 GATCGGTTCCGTCTCTGTGT 59.473 55.000 11.04 0.00 0.00 3.72
2309 3840 0.179134 GGATCGGTTCCGTCTCTGTG 60.179 60.000 11.04 0.00 33.93 3.66
2310 3841 2.190756 GGATCGGTTCCGTCTCTGT 58.809 57.895 11.04 0.00 33.93 3.41
2318 3849 3.881220 TCCACTAAAATGGATCGGTTCC 58.119 45.455 0.00 0.00 44.14 3.62
2328 3859 6.528537 TCATGGTTCCATTCCACTAAAATG 57.471 37.500 1.11 0.00 37.81 2.32
2329 3860 9.438163 AATATCATGGTTCCATTCCACTAAAAT 57.562 29.630 1.11 0.00 37.81 1.82
2330 3861 8.837099 AATATCATGGTTCCATTCCACTAAAA 57.163 30.769 1.11 0.00 37.81 1.52
2331 3862 7.505585 GGAATATCATGGTTCCATTCCACTAAA 59.494 37.037 12.35 0.00 42.72 1.85
2332 3863 7.004086 GGAATATCATGGTTCCATTCCACTAA 58.996 38.462 12.35 0.00 42.72 2.24
2333 3864 6.102468 TGGAATATCATGGTTCCATTCCACTA 59.898 38.462 15.01 0.00 46.59 2.74
2334 3865 5.103558 TGGAATATCATGGTTCCATTCCACT 60.104 40.000 15.01 0.00 46.59 4.00
2335 3866 5.139727 TGGAATATCATGGTTCCATTCCAC 58.860 41.667 15.01 0.00 46.59 4.02
2336 3867 5.400552 TGGAATATCATGGTTCCATTCCA 57.599 39.130 15.01 15.01 46.59 3.53
2342 3873 5.388654 AGTGGAATGGAATATCATGGTTCC 58.611 41.667 14.65 14.65 43.33 3.62
2343 3874 6.293626 CGAAGTGGAATGGAATATCATGGTTC 60.294 42.308 0.00 0.00 0.00 3.62
2344 3875 5.532406 CGAAGTGGAATGGAATATCATGGTT 59.468 40.000 0.00 0.00 0.00 3.67
2345 3876 5.065914 CGAAGTGGAATGGAATATCATGGT 58.934 41.667 0.00 0.00 0.00 3.55
2346 3877 5.065914 ACGAAGTGGAATGGAATATCATGG 58.934 41.667 0.00 0.00 42.51 3.66
2347 3878 6.293626 GGAACGAAGTGGAATGGAATATCATG 60.294 42.308 0.00 0.00 45.00 3.07
2348 3879 5.765182 GGAACGAAGTGGAATGGAATATCAT 59.235 40.000 0.00 0.00 45.00 2.45
2349 3880 5.123227 GGAACGAAGTGGAATGGAATATCA 58.877 41.667 0.00 0.00 45.00 2.15
2350 3881 5.674933 GGAACGAAGTGGAATGGAATATC 57.325 43.478 0.00 0.00 45.00 1.63
2368 3899 0.526739 GGTGTGTTTGGTTGCGGAAC 60.527 55.000 11.85 11.85 0.00 3.62
2369 3900 1.668101 GGGTGTGTTTGGTTGCGGAA 61.668 55.000 0.00 0.00 0.00 4.30
2370 3901 2.122167 GGGTGTGTTTGGTTGCGGA 61.122 57.895 0.00 0.00 0.00 5.54
2371 3902 1.671901 AAGGGTGTGTTTGGTTGCGG 61.672 55.000 0.00 0.00 0.00 5.69
2372 3903 1.001815 CTAAGGGTGTGTTTGGTTGCG 60.002 52.381 0.00 0.00 0.00 4.85
2373 3904 2.028876 ACTAAGGGTGTGTTTGGTTGC 58.971 47.619 0.00 0.00 0.00 4.17
2374 3905 2.621526 GGACTAAGGGTGTGTTTGGTTG 59.378 50.000 0.00 0.00 0.00 3.77
2375 3906 2.242708 TGGACTAAGGGTGTGTTTGGTT 59.757 45.455 0.00 0.00 0.00 3.67
2376 3907 1.847737 TGGACTAAGGGTGTGTTTGGT 59.152 47.619 0.00 0.00 0.00 3.67
2377 3908 2.621526 GTTGGACTAAGGGTGTGTTTGG 59.378 50.000 0.00 0.00 0.00 3.28
2378 3909 2.621526 GGTTGGACTAAGGGTGTGTTTG 59.378 50.000 0.00 0.00 0.00 2.93
2379 3910 2.242708 TGGTTGGACTAAGGGTGTGTTT 59.757 45.455 0.00 0.00 0.00 2.83
2380 3911 1.847737 TGGTTGGACTAAGGGTGTGTT 59.152 47.619 0.00 0.00 0.00 3.32
2381 3912 1.513858 TGGTTGGACTAAGGGTGTGT 58.486 50.000 0.00 0.00 0.00 3.72
2382 3913 2.105821 TCTTGGTTGGACTAAGGGTGTG 59.894 50.000 4.67 0.00 37.31 3.82
2383 3914 2.372172 CTCTTGGTTGGACTAAGGGTGT 59.628 50.000 4.67 0.00 37.31 4.16
2384 3915 2.290323 CCTCTTGGTTGGACTAAGGGTG 60.290 54.545 3.83 0.00 35.64 4.61
2385 3916 1.985895 CCTCTTGGTTGGACTAAGGGT 59.014 52.381 3.83 0.00 35.64 4.34
2386 3917 2.027100 GTCCTCTTGGTTGGACTAAGGG 60.027 54.545 5.05 1.36 46.65 3.95
2387 3918 3.336138 GTCCTCTTGGTTGGACTAAGG 57.664 52.381 5.05 0.00 46.65 2.69
2413 3944 4.321601 CCAGAGGACTGAGTTGAGTTGTAG 60.322 50.000 0.00 0.00 46.03 2.74
2438 3969 0.620556 AGTAATCCCACTGGCCACTG 59.379 55.000 0.00 2.66 0.00 3.66
2472 4003 7.749126 GCACCCTTTTGATTATTATACGCATAC 59.251 37.037 0.00 0.00 0.00 2.39
2483 4014 6.435164 ACTATTGGAGCACCCTTTTGATTAT 58.565 36.000 0.00 0.00 35.38 1.28
2505 4036 5.801380 ACACACCCGAATTAGATTGTTACT 58.199 37.500 0.00 0.00 0.00 2.24
2512 4043 3.104512 TGGAGACACACCCGAATTAGAT 58.895 45.455 0.00 0.00 33.40 1.98
2527 4058 3.870633 ACGTTAAGGACAGATGGAGAC 57.129 47.619 1.43 0.00 0.00 3.36
2543 4074 3.179830 GCGTCATGAGATACAGAACGTT 58.820 45.455 0.00 0.00 40.23 3.99


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.