Multiple sequence alignment - TraesCS5B01G551800

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G551800 chr5B 100.000 5573 0 0 1 5573 702887878 702893450 0.000000e+00 10292.0
1 TraesCS5B01G551800 chr5B 93.333 90 6 0 4060 4149 554645003 554645092 3.500000e-27 134.0
2 TraesCS5B01G551800 chr4A 92.083 3701 207 45 39 3720 617235162 617231529 0.000000e+00 5132.0
3 TraesCS5B01G551800 chr4A 94.023 1121 43 7 4145 5249 617231212 617230100 0.000000e+00 1677.0
4 TraesCS5B01G551800 chr4A 91.429 420 11 10 5173 5573 617230100 617229687 2.270000e-153 553.0
5 TraesCS5B01G551800 chr4A 93.814 194 10 1 3781 3974 617231531 617231340 1.960000e-74 291.0
6 TraesCS5B01G551800 chr5D 96.052 1621 59 5 2048 3668 550439489 550441104 0.000000e+00 2634.0
7 TraesCS5B01G551800 chr5D 91.465 1863 103 27 1 1840 550437662 550439491 0.000000e+00 2508.0
8 TraesCS5B01G551800 chr5D 92.287 1465 60 16 4145 5573 550441449 550442896 0.000000e+00 2030.0
9 TraesCS5B01G551800 chr5D 95.135 185 9 0 3781 3965 550441133 550441317 5.460000e-75 292.0
10 TraesCS5B01G551800 chr5D 79.182 269 36 13 5285 5538 99379489 99379226 9.600000e-38 169.0
11 TraesCS5B01G551800 chr3D 91.084 1660 127 14 2074 3720 602328526 602326875 0.000000e+00 2226.0
12 TraesCS5B01G551800 chr3D 86.578 1423 138 26 519 1925 602330073 602328688 0.000000e+00 1520.0
13 TraesCS5B01G551800 chr3D 85.267 862 70 24 4412 5226 602326139 602325288 0.000000e+00 835.0
14 TraesCS5B01G551800 chr3D 96.392 194 7 0 3781 3974 602326877 602326684 2.500000e-83 320.0
15 TraesCS5B01G551800 chr3D 85.433 254 31 5 4159 4408 602326466 602326215 5.540000e-65 259.0
16 TraesCS5B01G551800 chr3D 84.656 189 20 4 2254 2442 602869323 602869502 4.440000e-41 180.0
17 TraesCS5B01G551800 chr3B 91.021 1626 125 15 2074 3686 809605254 809603637 0.000000e+00 2174.0
18 TraesCS5B01G551800 chr3B 86.896 1427 133 21 552 1961 809606855 809605466 0.000000e+00 1550.0
19 TraesCS5B01G551800 chr3B 84.971 865 76 25 4411 5233 809602872 809602020 0.000000e+00 828.0
20 TraesCS5B01G551800 chr3B 97.340 188 5 0 3787 3974 809603636 809603449 2.500000e-83 320.0
21 TraesCS5B01G551800 chr3A 90.842 1627 133 11 2074 3688 732060808 732059186 0.000000e+00 2165.0
22 TraesCS5B01G551800 chr3A 87.585 1321 129 17 655 1961 732062262 732060963 0.000000e+00 1498.0
23 TraesCS5B01G551800 chr3A 86.007 536 32 15 4411 4911 732058361 732057834 8.220000e-148 534.0
24 TraesCS5B01G551800 chr3A 96.373 193 7 0 3781 3973 732059129 732058937 9.010000e-83 318.0
25 TraesCS5B01G551800 chr3A 86.555 238 24 7 4173 4408 732058668 732058437 7.160000e-64 255.0
26 TraesCS5B01G551800 chr5A 80.224 268 37 11 5285 5537 667036579 667036845 2.650000e-43 187.0
27 TraesCS5B01G551800 chr5A 85.271 129 15 4 4057 4183 491315763 491315889 4.530000e-26 130.0
28 TraesCS5B01G551800 chr4D 84.615 195 21 4 2254 2448 123391965 123391780 9.530000e-43 185.0
29 TraesCS5B01G551800 chr4D 84.615 195 21 4 2254 2448 134953453 134953268 9.530000e-43 185.0
30 TraesCS5B01G551800 chr4D 75.926 270 45 11 5284 5537 446644887 446644622 2.730000e-23 121.0
31 TraesCS5B01G551800 chr1D 85.185 189 19 4 2254 2442 212455132 212455311 9.530000e-43 185.0
32 TraesCS5B01G551800 chr7A 77.532 316 50 11 5241 5537 306225210 306225523 2.670000e-38 171.0
33 TraesCS5B01G551800 chr7A 91.579 95 8 0 4052 4146 82512308 82512402 1.260000e-26 132.0
34 TraesCS5B01G551800 chr2A 89.565 115 8 4 4059 4170 617178803 617178916 5.820000e-30 143.0
35 TraesCS5B01G551800 chr7D 94.382 89 5 0 4062 4150 498229838 498229926 2.710000e-28 137.0
36 TraesCS5B01G551800 chr7D 91.579 95 6 1 4062 4154 167548504 167548410 4.530000e-26 130.0
37 TraesCS5B01G551800 chr2D 94.253 87 5 0 4062 4148 302248013 302248099 3.500000e-27 134.0
38 TraesCS5B01G551800 chr6D 92.473 93 6 1 4062 4153 199210412 199210320 1.260000e-26 132.0
39 TraesCS5B01G551800 chr1B 92.391 92 5 2 4059 4149 548535455 548535545 4.530000e-26 130.0
40 TraesCS5B01G551800 chr1B 76.650 197 27 12 1829 2015 478611132 478611319 2.140000e-14 91.6
41 TraesCS5B01G551800 chr1B 76.142 197 28 12 1829 2015 478600791 478600978 9.950000e-13 86.1
42 TraesCS5B01G551800 chr6B 76.608 171 32 7 1803 1970 567542795 567542630 2.770000e-13 87.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G551800 chr5B 702887878 702893450 5572 False 10292.00 10292 100.00000 1 5573 1 chr5B.!!$F2 5572
1 TraesCS5B01G551800 chr4A 617229687 617235162 5475 True 1913.25 5132 92.83725 39 5573 4 chr4A.!!$R1 5534
2 TraesCS5B01G551800 chr5D 550437662 550442896 5234 False 1866.00 2634 93.73475 1 5573 4 chr5D.!!$F1 5572
3 TraesCS5B01G551800 chr3D 602325288 602330073 4785 True 1032.00 2226 88.95080 519 5226 5 chr3D.!!$R1 4707
4 TraesCS5B01G551800 chr3B 809602020 809606855 4835 True 1218.00 2174 90.05700 552 5233 4 chr3B.!!$R1 4681
5 TraesCS5B01G551800 chr3A 732057834 732062262 4428 True 954.00 2165 89.47240 655 4911 5 chr3A.!!$R1 4256

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
136 156 0.183014 TCCTCTACGGAGCCTACTGG 59.817 60.0 0.00 0.0 36.69 4.00 F
318 340 0.653323 CCGTTGTCGTGTTTCGCTTG 60.653 55.0 0.00 0.0 39.67 4.01 F
621 649 0.747852 TGGTGTAGCTGTCGTGTTCA 59.252 50.0 0.00 0.0 0.00 3.18 F
2037 2192 1.033574 ACGGAGGCAGCACTATAGAC 58.966 55.0 6.78 0.0 0.00 2.59 F
3109 3271 0.035739 GTCGAGGTTTGCCCCTTGTA 59.964 55.0 0.00 0.0 37.30 2.41 F
3735 3929 0.104882 TGTACTCCCTTGGTCCCACA 60.105 55.0 0.00 0.0 0.00 4.17 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1604 1655 0.675633 GTTGGCACAGCTCACCAAAT 59.324 50.000 12.06 0.0 44.67 2.32 R
2023 2178 0.682292 GGGAGGTCTATAGTGCTGCC 59.318 60.000 0.00 0.0 0.00 4.85 R
2154 2309 4.182693 TCGGAATTGTTCGACAGTGTAT 57.817 40.909 0.00 0.0 0.00 2.29 R
3764 3958 0.042731 CTACTCCCTCCCTCCCACAA 59.957 60.000 0.00 0.0 0.00 3.33 R
3974 4168 0.318762 GTCTGAGGGCACTCTTTCGT 59.681 55.000 18.70 0.0 44.29 3.85 R
5268 5864 0.893270 TGACAAAGTTCATGGGCGGG 60.893 55.000 0.00 0.0 0.00 6.13 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
74 77 2.749044 ATTGTGCTGCGAGGCCTG 60.749 61.111 12.00 3.42 0.00 4.85
77 80 2.669569 GTGCTGCGAGGCCTGAAA 60.670 61.111 12.00 0.00 0.00 2.69
78 81 2.042831 GTGCTGCGAGGCCTGAAAT 61.043 57.895 12.00 0.00 0.00 2.17
79 82 1.746615 TGCTGCGAGGCCTGAAATC 60.747 57.895 12.00 0.00 0.00 2.17
81 84 1.028868 GCTGCGAGGCCTGAAATCTT 61.029 55.000 12.00 0.00 0.00 2.40
82 85 1.743772 GCTGCGAGGCCTGAAATCTTA 60.744 52.381 12.00 0.00 0.00 2.10
83 86 2.843701 CTGCGAGGCCTGAAATCTTAT 58.156 47.619 12.00 0.00 0.00 1.73
84 87 2.805099 CTGCGAGGCCTGAAATCTTATC 59.195 50.000 12.00 0.00 0.00 1.75
85 88 2.435805 TGCGAGGCCTGAAATCTTATCT 59.564 45.455 12.00 0.00 0.00 1.98
89 92 5.509840 GCGAGGCCTGAAATCTTATCTTCTA 60.510 44.000 12.00 0.00 0.00 2.10
104 107 3.076621 TCTTCTACTACTTTCCGTCGCA 58.923 45.455 0.00 0.00 0.00 5.10
116 119 0.529992 CCGTCGCATAGGGTTTCTCC 60.530 60.000 0.00 0.00 0.00 3.71
126 146 1.112950 GGGTTTCTCCTCCTCTACGG 58.887 60.000 0.00 0.00 36.25 4.02
136 156 0.183014 TCCTCTACGGAGCCTACTGG 59.817 60.000 0.00 0.00 36.69 4.00
163 183 3.134804 GGACTGGTTGATATGCTGTAGGT 59.865 47.826 0.00 0.00 0.00 3.08
168 188 2.238942 TGATATGCTGTAGGTTGGCG 57.761 50.000 0.00 0.00 0.00 5.69
184 204 5.242838 AGGTTGGCGATGTTTCTTTTAATCA 59.757 36.000 0.00 0.00 0.00 2.57
189 209 6.150976 TGGCGATGTTTCTTTTAATCATCACT 59.849 34.615 0.00 0.00 35.91 3.41
190 210 6.688813 GGCGATGTTTCTTTTAATCATCACTC 59.311 38.462 0.00 0.00 35.91 3.51
191 211 7.243487 GCGATGTTTCTTTTAATCATCACTCA 58.757 34.615 0.00 0.00 35.91 3.41
192 212 7.217070 GCGATGTTTCTTTTAATCATCACTCAC 59.783 37.037 0.00 0.00 35.91 3.51
234 254 2.349817 CGCCGCTTATTGATTCCATGAC 60.350 50.000 0.00 0.00 0.00 3.06
249 271 7.890127 TGATTCCATGACTCCAGTCTTTATTTT 59.110 33.333 8.19 0.00 44.99 1.82
250 272 9.396022 GATTCCATGACTCCAGTCTTTATTTTA 57.604 33.333 8.19 0.00 44.99 1.52
251 273 8.792830 TTCCATGACTCCAGTCTTTATTTTAG 57.207 34.615 8.19 0.00 44.99 1.85
252 274 8.146053 TCCATGACTCCAGTCTTTATTTTAGA 57.854 34.615 8.19 0.00 44.99 2.10
259 281 8.425703 ACTCCAGTCTTTATTTTAGATAGAGGC 58.574 37.037 0.00 0.00 0.00 4.70
276 298 8.277918 AGATAGAGGCTCAATAAATTTTGTCCT 58.722 33.333 18.26 1.59 35.21 3.85
282 304 5.054390 TCAATAAATTTTGTCCTGTCGCC 57.946 39.130 0.00 0.00 0.00 5.54
292 314 2.407616 CTGTCGCCGCGTCTATCA 59.592 61.111 13.39 5.18 0.00 2.15
296 318 3.026879 CGCCGCGTCTATCAGCTG 61.027 66.667 7.63 7.63 0.00 4.24
318 340 0.653323 CCGTTGTCGTGTTTCGCTTG 60.653 55.000 0.00 0.00 39.67 4.01
323 345 1.010125 TCGTGTTTCGCTTGCTTGC 60.010 52.632 0.00 0.00 39.67 4.01
331 353 1.440353 CGCTTGCTTGCCGTGTAAC 60.440 57.895 0.00 0.00 0.00 2.50
345 367 4.211374 GCCGTGTAACTAGCATTTATCCTG 59.789 45.833 0.00 0.00 34.37 3.86
346 368 4.750098 CCGTGTAACTAGCATTTATCCTGG 59.250 45.833 0.00 0.00 31.75 4.45
347 369 5.452776 CCGTGTAACTAGCATTTATCCTGGA 60.453 44.000 0.00 0.00 31.75 3.86
388 410 0.899720 TTGTTCCGCCTACCGATTCT 59.100 50.000 0.00 0.00 40.02 2.40
397 419 3.490249 CGCCTACCGATTCTGTCACATTA 60.490 47.826 0.00 0.00 40.02 1.90
427 450 6.934056 TGGATCTAATTTTTGACATGGGTTG 58.066 36.000 0.00 0.00 0.00 3.77
434 459 5.574891 TTTTTGACATGGGTTGGATATCG 57.425 39.130 0.00 0.00 0.00 2.92
453 478 3.577667 TCGGTTGACGGTTATGTAACAG 58.422 45.455 5.38 3.77 44.45 3.16
459 484 2.842485 GACGGTTATGTAACAGTCGACG 59.158 50.000 16.41 7.86 45.93 5.12
517 542 3.044305 GGTGGCGTGACTCTGTGC 61.044 66.667 0.00 0.00 0.00 4.57
565 590 6.821665 ACACAATGGCACGTAATTAATAGACT 59.178 34.615 0.00 0.00 0.00 3.24
621 649 0.747852 TGGTGTAGCTGTCGTGTTCA 59.252 50.000 0.00 0.00 0.00 3.18
663 700 1.562691 CGTTTTCTCTTGCACGCGA 59.437 52.632 15.93 0.00 0.00 5.87
677 714 3.302964 TGCACGCGATGATTAATTTTTGC 59.697 39.130 15.93 7.95 0.00 3.68
680 717 3.547468 ACGCGATGATTAATTTTTGCTGC 59.453 39.130 15.93 0.00 0.00 5.25
691 728 8.700722 ATTAATTTTTGCTGCGATTACATGAA 57.299 26.923 0.00 0.00 0.00 2.57
692 729 8.700722 TTAATTTTTGCTGCGATTACATGAAT 57.299 26.923 0.00 0.00 0.00 2.57
728 765 7.328737 ACGGCTACTTGTTGAGTTCTTATTAT 58.671 34.615 0.00 0.00 39.86 1.28
757 794 2.357009 AGGCTTGCTGCTGATTTATTCG 59.643 45.455 0.00 0.00 42.39 3.34
762 799 3.081061 TGCTGCTGATTTATTCGTGGTT 58.919 40.909 0.00 0.00 0.00 3.67
808 853 1.630369 TGGGAACATCTTGCTAGCACT 59.370 47.619 19.17 1.93 33.40 4.40
809 854 2.284190 GGGAACATCTTGCTAGCACTC 58.716 52.381 19.17 0.00 0.00 3.51
822 867 1.805869 AGCACTCTCATTGCAGTGAC 58.194 50.000 7.97 0.00 42.37 3.67
874 919 2.479275 CTGCACTGTCATGTCTGTTGAG 59.521 50.000 0.00 0.00 0.00 3.02
881 926 3.057019 GTCATGTCTGTTGAGTGCGTTA 58.943 45.455 0.00 0.00 0.00 3.18
882 927 3.493129 GTCATGTCTGTTGAGTGCGTTAA 59.507 43.478 0.00 0.00 0.00 2.01
883 928 4.025229 GTCATGTCTGTTGAGTGCGTTAAA 60.025 41.667 0.00 0.00 0.00 1.52
899 944 8.070171 AGTGCGTTAAAATGCTATATCATGAAC 58.930 33.333 0.00 0.00 41.45 3.18
901 946 7.069569 GCGTTAAAATGCTATATCATGAACGT 58.930 34.615 20.73 0.00 38.58 3.99
993 1040 9.515020 TTTTCATTCATTTTCTTGTGTAGTGAC 57.485 29.630 0.00 0.00 0.00 3.67
1119 1166 4.392754 GGTACGGACGAATTGGTTGTTTAT 59.607 41.667 0.00 0.00 0.00 1.40
1314 1364 3.023946 AGCGACATAGATGCTGATGAC 57.976 47.619 0.00 0.00 37.62 3.06
1458 1508 2.149578 AGTCAAGCTGCAAGTGTCATC 58.850 47.619 1.02 0.00 35.30 2.92
1645 1696 8.912988 CCAACATAACATGAGGTTAACCATTAT 58.087 33.333 26.26 16.52 44.70 1.28
1653 1704 8.850156 ACATGAGGTTAACCATTATTGAATAGC 58.150 33.333 26.26 0.00 38.89 2.97
1659 1710 7.862873 GGTTAACCATTATTGAATAGCTTCAGC 59.137 37.037 20.12 0.00 38.07 4.26
1664 1715 7.392673 ACCATTATTGAATAGCTTCAGCCTATG 59.607 37.037 0.00 0.00 42.19 2.23
1887 1941 5.450818 TCTAGAATACCAAACCAATGCCT 57.549 39.130 0.00 0.00 0.00 4.75
1888 1942 5.192927 TCTAGAATACCAAACCAATGCCTG 58.807 41.667 0.00 0.00 0.00 4.85
1979 2087 9.403110 CTCTAAACTTTGTCAAATTGATGAAGG 57.597 33.333 18.62 10.39 30.45 3.46
1985 2093 6.713762 TTGTCAAATTGATGAAGGTTGACT 57.286 33.333 18.47 0.00 45.29 3.41
1989 2097 7.706179 TGTCAAATTGATGAAGGTTGACTTTTC 59.294 33.333 18.47 1.29 45.29 2.29
2023 2178 3.822996 CGCACTCTATTATGGTACGGAG 58.177 50.000 0.00 0.00 0.00 4.63
2037 2192 1.033574 ACGGAGGCAGCACTATAGAC 58.966 55.000 6.78 0.00 0.00 2.59
2044 2199 1.342819 GCAGCACTATAGACCTCCCAG 59.657 57.143 6.78 0.00 0.00 4.45
2153 2308 2.936919 TCTCTTTGTGTGGTGCTCAT 57.063 45.000 0.00 0.00 0.00 2.90
2154 2309 4.350368 TTCTCTTTGTGTGGTGCTCATA 57.650 40.909 0.00 0.00 0.00 2.15
2174 2329 5.746721 TCATATACACTGTCGAACAATTCCG 59.253 40.000 0.00 0.00 0.00 4.30
2194 2349 4.584743 TCCGATCTTTTGAGCTCTGCTATA 59.415 41.667 16.19 0.00 39.88 1.31
2223 2381 6.367161 TCAATATCCATTCTTCAGCATTCCA 58.633 36.000 0.00 0.00 0.00 3.53
2237 2395 7.333528 TCAGCATTCCACCAATTATTAACTC 57.666 36.000 0.00 0.00 0.00 3.01
2242 2400 8.135529 GCATTCCACCAATTATTAACTCTTACC 58.864 37.037 0.00 0.00 0.00 2.85
2331 2489 6.668541 ACAATTCTCTACAAATGTCCATCG 57.331 37.500 0.00 0.00 0.00 3.84
2578 2736 3.007398 GTCTATGGTCCCAGCTATTCCTG 59.993 52.174 0.00 0.00 0.00 3.86
2754 2912 7.141758 TGATAAGGAGGAAAGCATAATCACT 57.858 36.000 0.00 0.00 0.00 3.41
2780 2938 1.067776 GTCCACTGAGGTTAGACCACG 60.068 57.143 0.00 0.00 41.95 4.94
2820 2979 7.386848 AGTTGTGCTTTGTCGTTTATACACTAT 59.613 33.333 0.00 0.00 0.00 2.12
2824 2983 9.047871 GTGCTTTGTCGTTTATACACTATTTTC 57.952 33.333 0.00 0.00 0.00 2.29
3047 3208 8.212259 AGTCTAAGGCAATTATCCACATATCT 57.788 34.615 0.00 0.00 0.00 1.98
3109 3271 0.035739 GTCGAGGTTTGCCCCTTGTA 59.964 55.000 0.00 0.00 37.30 2.41
3144 3306 9.889128 TGAGATAGTCTCTATGTGATCTATCTG 57.111 37.037 14.45 0.00 43.73 2.90
3273 3436 0.247460 GTGGGGAGGCAAAATTCTGC 59.753 55.000 0.00 0.00 41.85 4.26
3311 3474 1.454847 GTTGCCACCACTGAACCCA 60.455 57.895 0.00 0.00 0.00 4.51
3362 3525 8.177663 CAGCATTATTACCTTACAGTCAACAAG 58.822 37.037 0.00 0.00 0.00 3.16
3416 3579 1.654105 CTGAGCGTGGTTCGAATGTAC 59.346 52.381 0.00 0.15 42.86 2.90
3513 3676 5.450453 TGTTTCCCTGTTGACCTTCATAAA 58.550 37.500 0.00 0.00 0.00 1.40
3645 3809 2.418368 AGGTTGCAACTGAACTCACA 57.582 45.000 27.64 0.00 0.00 3.58
3650 3814 5.009010 AGGTTGCAACTGAACTCACAATAAG 59.991 40.000 27.64 0.00 0.00 1.73
3661 3825 6.430000 TGAACTCACAATAAGCCCTTTCTAAC 59.570 38.462 0.00 0.00 0.00 2.34
3669 3833 0.251073 GCCCTTTCTAACCCGTGCTA 59.749 55.000 0.00 0.00 0.00 3.49
3670 3834 1.134189 GCCCTTTCTAACCCGTGCTAT 60.134 52.381 0.00 0.00 0.00 2.97
3671 3835 2.835027 CCCTTTCTAACCCGTGCTATC 58.165 52.381 0.00 0.00 0.00 2.08
3717 3911 4.022935 TGTGTGCAGGCTTTCTTAGATTTG 60.023 41.667 0.00 0.00 0.00 2.32
3718 3912 4.022849 GTGTGCAGGCTTTCTTAGATTTGT 60.023 41.667 0.00 0.00 0.00 2.83
3719 3913 5.181245 GTGTGCAGGCTTTCTTAGATTTGTA 59.819 40.000 0.00 0.00 0.00 2.41
3720 3914 5.181245 TGTGCAGGCTTTCTTAGATTTGTAC 59.819 40.000 0.00 0.00 0.00 2.90
3721 3915 5.412904 GTGCAGGCTTTCTTAGATTTGTACT 59.587 40.000 0.00 0.00 0.00 2.73
3722 3916 5.643777 TGCAGGCTTTCTTAGATTTGTACTC 59.356 40.000 0.00 0.00 0.00 2.59
3723 3917 5.065346 GCAGGCTTTCTTAGATTTGTACTCC 59.935 44.000 0.00 0.00 0.00 3.85
3724 3918 5.586643 CAGGCTTTCTTAGATTTGTACTCCC 59.413 44.000 0.00 0.00 0.00 4.30
3725 3919 5.489278 AGGCTTTCTTAGATTTGTACTCCCT 59.511 40.000 0.00 0.00 0.00 4.20
3726 3920 6.012421 AGGCTTTCTTAGATTTGTACTCCCTT 60.012 38.462 0.00 0.00 0.00 3.95
3727 3921 6.094186 GGCTTTCTTAGATTTGTACTCCCTTG 59.906 42.308 0.00 0.00 0.00 3.61
3728 3922 6.094186 GCTTTCTTAGATTTGTACTCCCTTGG 59.906 42.308 0.00 0.00 0.00 3.61
3729 3923 6.697641 TTCTTAGATTTGTACTCCCTTGGT 57.302 37.500 0.00 0.00 0.00 3.67
3730 3924 6.295719 TCTTAGATTTGTACTCCCTTGGTC 57.704 41.667 0.00 0.00 0.00 4.02
3731 3925 5.189145 TCTTAGATTTGTACTCCCTTGGTCC 59.811 44.000 0.00 0.00 0.00 4.46
3732 3926 2.576648 AGATTTGTACTCCCTTGGTCCC 59.423 50.000 0.00 0.00 0.00 4.46
3733 3927 1.822425 TTTGTACTCCCTTGGTCCCA 58.178 50.000 0.00 0.00 0.00 4.37
3734 3928 1.061546 TTGTACTCCCTTGGTCCCAC 58.938 55.000 0.00 0.00 0.00 4.61
3735 3929 0.104882 TGTACTCCCTTGGTCCCACA 60.105 55.000 0.00 0.00 0.00 4.17
3736 3930 1.061546 GTACTCCCTTGGTCCCACAA 58.938 55.000 0.00 0.00 0.00 3.33
3737 3931 1.633945 GTACTCCCTTGGTCCCACAAT 59.366 52.381 0.00 0.00 0.00 2.71
3738 3932 2.053747 ACTCCCTTGGTCCCACAATA 57.946 50.000 0.00 0.00 0.00 1.90
3739 3933 2.573463 ACTCCCTTGGTCCCACAATAT 58.427 47.619 0.00 0.00 0.00 1.28
3740 3934 3.743132 ACTCCCTTGGTCCCACAATATA 58.257 45.455 0.00 0.00 0.00 0.86
3741 3935 4.116113 ACTCCCTTGGTCCCACAATATAA 58.884 43.478 0.00 0.00 0.00 0.98
3742 3936 4.166144 ACTCCCTTGGTCCCACAATATAAG 59.834 45.833 0.00 0.00 0.00 1.73
3743 3937 4.376223 TCCCTTGGTCCCACAATATAAGA 58.624 43.478 0.00 0.00 0.00 2.10
3744 3938 4.165372 TCCCTTGGTCCCACAATATAAGAC 59.835 45.833 0.00 0.00 0.00 3.01
3745 3939 4.127171 CCTTGGTCCCACAATATAAGACG 58.873 47.826 0.00 0.00 0.00 4.18
3746 3940 3.188159 TGGTCCCACAATATAAGACGC 57.812 47.619 0.00 0.00 0.00 5.19
3747 3941 2.769663 TGGTCCCACAATATAAGACGCT 59.230 45.455 0.00 0.00 0.00 5.07
3748 3942 3.962063 TGGTCCCACAATATAAGACGCTA 59.038 43.478 0.00 0.00 0.00 4.26
3749 3943 4.591498 TGGTCCCACAATATAAGACGCTAT 59.409 41.667 0.00 0.00 0.00 2.97
3750 3944 5.071250 TGGTCCCACAATATAAGACGCTATT 59.929 40.000 0.00 0.00 0.00 1.73
3751 3945 6.268158 TGGTCCCACAATATAAGACGCTATTA 59.732 38.462 0.00 0.00 0.00 0.98
3752 3946 7.038587 TGGTCCCACAATATAAGACGCTATTAT 60.039 37.037 0.00 0.00 0.00 1.28
3753 3947 7.822822 GGTCCCACAATATAAGACGCTATTATT 59.177 37.037 0.00 0.00 0.00 1.40
3754 3948 9.216117 GTCCCACAATATAAGACGCTATTATTT 57.784 33.333 0.00 0.00 0.00 1.40
3755 3949 9.214957 TCCCACAATATAAGACGCTATTATTTG 57.785 33.333 0.00 0.00 0.00 2.32
3756 3950 8.450964 CCCACAATATAAGACGCTATTATTTGG 58.549 37.037 0.00 0.00 0.00 3.28
3757 3951 8.450964 CCACAATATAAGACGCTATTATTTGGG 58.549 37.037 0.00 0.00 0.00 4.12
3758 3952 8.999431 CACAATATAAGACGCTATTATTTGGGT 58.001 33.333 0.00 0.00 0.00 4.51
3759 3953 9.216117 ACAATATAAGACGCTATTATTTGGGTC 57.784 33.333 7.75 7.75 43.51 4.46
3767 3961 7.875327 ACGCTATTATTTGGGTCTTTATTGT 57.125 32.000 0.00 0.00 0.00 2.71
3768 3962 7.703328 ACGCTATTATTTGGGTCTTTATTGTG 58.297 34.615 0.00 0.00 0.00 3.33
3769 3963 7.138736 CGCTATTATTTGGGTCTTTATTGTGG 58.861 38.462 0.00 0.00 0.00 4.17
3770 3964 7.433680 GCTATTATTTGGGTCTTTATTGTGGG 58.566 38.462 0.00 0.00 0.00 4.61
3771 3965 7.286775 GCTATTATTTGGGTCTTTATTGTGGGA 59.713 37.037 0.00 0.00 0.00 4.37
3772 3966 7.660030 ATTATTTGGGTCTTTATTGTGGGAG 57.340 36.000 0.00 0.00 0.00 4.30
3773 3967 3.449746 TTGGGTCTTTATTGTGGGAGG 57.550 47.619 0.00 0.00 0.00 4.30
3774 3968 1.638589 TGGGTCTTTATTGTGGGAGGG 59.361 52.381 0.00 0.00 0.00 4.30
3775 3969 1.920351 GGGTCTTTATTGTGGGAGGGA 59.080 52.381 0.00 0.00 0.00 4.20
3776 3970 2.092375 GGGTCTTTATTGTGGGAGGGAG 60.092 54.545 0.00 0.00 0.00 4.30
3777 3971 2.092375 GGTCTTTATTGTGGGAGGGAGG 60.092 54.545 0.00 0.00 0.00 4.30
3778 3972 2.092375 GTCTTTATTGTGGGAGGGAGGG 60.092 54.545 0.00 0.00 0.00 4.30
3779 3973 2.205342 CTTTATTGTGGGAGGGAGGGA 58.795 52.381 0.00 0.00 0.00 4.20
3790 3984 4.426023 TGGGAGGGAGGGAGTAGTTATTAT 59.574 45.833 0.00 0.00 0.00 1.28
3974 4168 4.662468 TTTCATTTTACTGGTGCTTGCA 57.338 36.364 0.00 0.00 0.00 4.08
3991 4286 2.832931 CACGAAAGAGTGCCCTCAG 58.167 57.895 0.00 0.00 40.40 3.35
3992 4287 0.318441 CACGAAAGAGTGCCCTCAGA 59.682 55.000 0.00 0.00 40.40 3.27
3994 4289 0.605589 CGAAAGAGTGCCCTCAGACT 59.394 55.000 0.00 0.00 40.40 3.24
4003 4313 0.898320 GCCCTCAGACTCTACTTGCA 59.102 55.000 0.00 0.00 0.00 4.08
4043 4441 9.305555 TCAATCCATTAGTATACCAGTACCTAC 57.694 37.037 0.00 0.00 0.00 3.18
4065 4463 9.152595 CCTACAAGAATAGGTTGTTTTCTACTC 57.847 37.037 0.00 0.00 38.98 2.59
4066 4464 7.981102 ACAAGAATAGGTTGTTTTCTACTCC 57.019 36.000 0.00 0.00 34.37 3.85
4067 4465 6.940867 ACAAGAATAGGTTGTTTTCTACTCCC 59.059 38.462 0.00 0.00 34.37 4.30
4068 4466 6.954352 AGAATAGGTTGTTTTCTACTCCCT 57.046 37.500 0.00 0.00 33.77 4.20
4069 4467 6.948589 AGAATAGGTTGTTTTCTACTCCCTC 58.051 40.000 0.00 0.00 32.26 4.30
4070 4468 5.695424 ATAGGTTGTTTTCTACTCCCTCC 57.305 43.478 0.00 0.00 32.26 4.30
4071 4469 2.302157 AGGTTGTTTTCTACTCCCTCCG 59.698 50.000 0.00 0.00 0.00 4.63
4072 4470 2.038164 GGTTGTTTTCTACTCCCTCCGT 59.962 50.000 0.00 0.00 0.00 4.69
4073 4471 3.259123 GGTTGTTTTCTACTCCCTCCGTA 59.741 47.826 0.00 0.00 0.00 4.02
4074 4472 4.262592 GGTTGTTTTCTACTCCCTCCGTAA 60.263 45.833 0.00 0.00 0.00 3.18
4075 4473 5.299949 GTTGTTTTCTACTCCCTCCGTAAA 58.700 41.667 0.00 0.00 0.00 2.01
4076 4474 5.143376 TGTTTTCTACTCCCTCCGTAAAG 57.857 43.478 0.00 0.00 0.00 1.85
4077 4475 4.834496 TGTTTTCTACTCCCTCCGTAAAGA 59.166 41.667 0.00 0.00 0.00 2.52
4078 4476 5.305128 TGTTTTCTACTCCCTCCGTAAAGAA 59.695 40.000 0.00 0.00 0.00 2.52
4079 4477 6.183360 TGTTTTCTACTCCCTCCGTAAAGAAA 60.183 38.462 0.00 0.00 0.00 2.52
4080 4478 6.616237 TTTCTACTCCCTCCGTAAAGAAAT 57.384 37.500 0.00 0.00 0.00 2.17
4081 4479 7.722949 TTTCTACTCCCTCCGTAAAGAAATA 57.277 36.000 0.00 0.00 0.00 1.40
4082 4480 7.909485 TTCTACTCCCTCCGTAAAGAAATAT 57.091 36.000 0.00 0.00 0.00 1.28
4083 4481 9.425248 TTTCTACTCCCTCCGTAAAGAAATATA 57.575 33.333 0.00 0.00 0.00 0.86
4084 4482 9.425248 TTCTACTCCCTCCGTAAAGAAATATAA 57.575 33.333 0.00 0.00 0.00 0.98
4085 4483 9.075678 TCTACTCCCTCCGTAAAGAAATATAAG 57.924 37.037 0.00 0.00 0.00 1.73
4086 4484 7.909485 ACTCCCTCCGTAAAGAAATATAAGA 57.091 36.000 0.00 0.00 0.00 2.10
4087 4485 7.953752 ACTCCCTCCGTAAAGAAATATAAGAG 58.046 38.462 0.00 0.00 0.00 2.85
4088 4486 6.756221 TCCCTCCGTAAAGAAATATAAGAGC 58.244 40.000 0.00 0.00 0.00 4.09
4089 4487 5.634020 CCCTCCGTAAAGAAATATAAGAGCG 59.366 44.000 0.00 0.00 0.00 5.03
4090 4488 6.214399 CCTCCGTAAAGAAATATAAGAGCGT 58.786 40.000 0.00 0.00 0.00 5.07
4091 4489 6.700520 CCTCCGTAAAGAAATATAAGAGCGTT 59.299 38.462 0.00 0.00 0.00 4.84
4092 4490 7.224167 CCTCCGTAAAGAAATATAAGAGCGTTT 59.776 37.037 0.00 0.00 0.00 3.60
4093 4491 9.241317 CTCCGTAAAGAAATATAAGAGCGTTTA 57.759 33.333 0.00 0.00 0.00 2.01
4094 4492 9.241317 TCCGTAAAGAAATATAAGAGCGTTTAG 57.759 33.333 0.00 0.00 0.00 1.85
4095 4493 9.241317 CCGTAAAGAAATATAAGAGCGTTTAGA 57.759 33.333 0.00 0.00 0.00 2.10
4118 4516 5.638596 TCGCTGAAGTAGTGATCTAAACA 57.361 39.130 0.00 0.00 40.86 2.83
4119 4517 5.399858 TCGCTGAAGTAGTGATCTAAACAC 58.600 41.667 0.00 0.00 40.86 3.32
4120 4518 4.263209 CGCTGAAGTAGTGATCTAAACACG 59.737 45.833 0.00 0.00 42.25 4.49
4121 4519 4.031878 GCTGAAGTAGTGATCTAAACACGC 59.968 45.833 0.00 0.00 42.25 5.34
4122 4520 5.386958 TGAAGTAGTGATCTAAACACGCT 57.613 39.130 0.00 0.00 42.25 5.07
4123 4521 5.779922 TGAAGTAGTGATCTAAACACGCTT 58.220 37.500 0.00 0.00 42.25 4.68
4124 4522 6.916440 TGAAGTAGTGATCTAAACACGCTTA 58.084 36.000 0.00 0.00 42.25 3.09
4125 4523 7.544622 TGAAGTAGTGATCTAAACACGCTTAT 58.455 34.615 0.00 0.00 42.25 1.73
4126 4524 8.680001 TGAAGTAGTGATCTAAACACGCTTATA 58.320 33.333 0.00 0.00 42.25 0.98
4127 4525 9.680315 GAAGTAGTGATCTAAACACGCTTATAT 57.320 33.333 0.00 0.00 42.25 0.86
4132 4530 9.601217 AGTGATCTAAACACGCTTATATTTCTT 57.399 29.630 0.00 0.00 42.25 2.52
4133 4531 9.851043 GTGATCTAAACACGCTTATATTTCTTC 57.149 33.333 0.00 0.00 0.00 2.87
4134 4532 9.594478 TGATCTAAACACGCTTATATTTCTTCA 57.406 29.630 0.00 0.00 0.00 3.02
4135 4533 9.851043 GATCTAAACACGCTTATATTTCTTCAC 57.149 33.333 0.00 0.00 0.00 3.18
4136 4534 7.891782 TCTAAACACGCTTATATTTCTTCACG 58.108 34.615 0.00 0.00 0.00 4.35
4137 4535 5.464965 AACACGCTTATATTTCTTCACGG 57.535 39.130 0.00 0.00 0.00 4.94
4138 4536 4.751060 ACACGCTTATATTTCTTCACGGA 58.249 39.130 0.00 0.00 0.00 4.69
4139 4537 4.804139 ACACGCTTATATTTCTTCACGGAG 59.196 41.667 0.00 0.00 0.00 4.63
4140 4538 4.209288 CACGCTTATATTTCTTCACGGAGG 59.791 45.833 0.00 0.00 0.00 4.30
4141 4539 3.741344 CGCTTATATTTCTTCACGGAGGG 59.259 47.826 0.00 0.00 0.00 4.30
4142 4540 4.500887 CGCTTATATTTCTTCACGGAGGGA 60.501 45.833 0.00 0.00 0.00 4.20
4143 4541 4.991687 GCTTATATTTCTTCACGGAGGGAG 59.008 45.833 0.00 0.00 0.00 4.30
4144 4542 5.453480 GCTTATATTTCTTCACGGAGGGAGT 60.453 44.000 0.00 0.00 0.00 3.85
4145 4543 6.239232 GCTTATATTTCTTCACGGAGGGAGTA 60.239 42.308 0.00 0.00 0.00 2.59
4146 4544 3.889520 ATTTCTTCACGGAGGGAGTAC 57.110 47.619 0.00 0.00 0.00 2.73
4147 4545 2.599408 TTCTTCACGGAGGGAGTACT 57.401 50.000 0.00 0.00 0.00 2.73
4254 4657 9.935682 GATGAAATTATAACATAGTGGTGTGTG 57.064 33.333 0.00 0.00 31.49 3.82
4255 4658 8.856153 TGAAATTATAACATAGTGGTGTGTGT 57.144 30.769 0.00 0.00 31.49 3.72
4256 4659 9.290988 TGAAATTATAACATAGTGGTGTGTGTT 57.709 29.630 0.00 0.00 38.28 3.32
4257 4660 9.769093 GAAATTATAACATAGTGGTGTGTGTTC 57.231 33.333 0.00 0.00 36.34 3.18
4258 4661 8.856153 AATTATAACATAGTGGTGTGTGTTCA 57.144 30.769 0.00 0.00 36.34 3.18
4261 4664 3.879998 ACATAGTGGTGTGTGTTCAACA 58.120 40.909 0.00 0.00 36.04 3.33
4592 5071 2.388310 GGAGGTTCCTGCTGTAGTTC 57.612 55.000 3.12 0.00 32.53 3.01
4629 5120 2.360801 AGCTCTATCGGACTTCTCTTGC 59.639 50.000 0.00 0.00 0.00 4.01
4668 5165 2.304180 ACTGTGTTCTCCATCCCTTCAG 59.696 50.000 0.00 0.00 0.00 3.02
4803 5301 4.039151 TCGATGACTGCTTCAATCTCTC 57.961 45.455 0.00 0.00 37.92 3.20
4836 5334 4.338879 ACCAATTCTTTATGCTGTCAGCT 58.661 39.130 24.76 13.11 42.97 4.24
4846 5344 1.271217 TGCTGTCAGCTCTGATTGCTT 60.271 47.619 24.76 0.00 42.97 3.91
4854 5352 5.292101 GTCAGCTCTGATTGCTTATACGTTT 59.708 40.000 2.62 0.00 42.18 3.60
5084 5596 1.378531 TGCCGCTTACCATGATTGAC 58.621 50.000 0.00 0.00 0.00 3.18
5107 5620 1.135527 TCTTCAGTCGAACACGTGGTT 59.864 47.619 21.57 11.62 44.10 3.67
5162 5682 5.366768 TCATCCTAAGATACCCAAGGACTTG 59.633 44.000 5.09 5.09 40.83 3.16
5204 5800 5.776716 AGAAATCTGTTTCATGGTGACCAAT 59.223 36.000 9.06 0.00 44.92 3.16
5266 5862 9.665719 TTAAAAAGTTCAAAATCTCAAAAGCCT 57.334 25.926 0.00 0.00 0.00 4.58
5267 5863 7.543947 AAAAGTTCAAAATCTCAAAAGCCTG 57.456 32.000 0.00 0.00 0.00 4.85
5268 5864 4.625028 AGTTCAAAATCTCAAAAGCCTGC 58.375 39.130 0.00 0.00 0.00 4.85
5269 5865 3.665745 TCAAAATCTCAAAAGCCTGCC 57.334 42.857 0.00 0.00 0.00 4.85
5270 5866 2.299867 TCAAAATCTCAAAAGCCTGCCC 59.700 45.455 0.00 0.00 0.00 5.36
5271 5867 0.890683 AAATCTCAAAAGCCTGCCCG 59.109 50.000 0.00 0.00 0.00 6.13
5315 5921 1.027357 CATGCTACCCATGCAGGTTC 58.973 55.000 2.55 0.00 44.34 3.62
5389 5995 0.895559 CTCACAAAGACCCCTTGGCC 60.896 60.000 0.00 0.00 33.59 5.36
5421 6028 5.472137 GCAAGACATAAGAAAACAGGTACCA 59.528 40.000 15.94 0.00 0.00 3.25
5423 6030 6.435292 AGACATAAGAAAACAGGTACCACT 57.565 37.500 15.94 0.00 0.00 4.00
5425 6032 7.287810 AGACATAAGAAAACAGGTACCACTTT 58.712 34.615 15.94 9.97 0.00 2.66
5426 6033 7.228706 AGACATAAGAAAACAGGTACCACTTTG 59.771 37.037 15.94 5.96 0.00 2.77
5512 6130 7.393234 TCCACAACCTGTCCTTCAAATATTTAG 59.607 37.037 0.00 0.00 0.00 1.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 2.159099 TCGCGAGCCTGATGTCTAAATT 60.159 45.455 3.71 0.00 0.00 1.82
32 34 4.415224 AACCCTAAACCCTAGACTCAGA 57.585 45.455 0.00 0.00 0.00 3.27
35 37 4.273318 TCGTAACCCTAAACCCTAGACTC 58.727 47.826 0.00 0.00 0.00 3.36
37 39 5.105187 ACAATCGTAACCCTAAACCCTAGAC 60.105 44.000 0.00 0.00 0.00 2.59
77 80 7.520292 GCGACGGAAAGTAGTAGAAGATAAGAT 60.520 40.741 0.00 0.00 0.00 2.40
78 81 6.238320 GCGACGGAAAGTAGTAGAAGATAAGA 60.238 42.308 0.00 0.00 0.00 2.10
79 82 5.908499 GCGACGGAAAGTAGTAGAAGATAAG 59.092 44.000 0.00 0.00 0.00 1.73
81 84 4.877823 TGCGACGGAAAGTAGTAGAAGATA 59.122 41.667 0.00 0.00 0.00 1.98
82 85 3.693085 TGCGACGGAAAGTAGTAGAAGAT 59.307 43.478 0.00 0.00 0.00 2.40
83 86 3.076621 TGCGACGGAAAGTAGTAGAAGA 58.923 45.455 0.00 0.00 0.00 2.87
84 87 3.482722 TGCGACGGAAAGTAGTAGAAG 57.517 47.619 0.00 0.00 0.00 2.85
85 88 4.036027 CCTATGCGACGGAAAGTAGTAGAA 59.964 45.833 0.00 0.00 0.00 2.10
89 92 1.407979 CCCTATGCGACGGAAAGTAGT 59.592 52.381 0.00 0.00 0.00 2.73
98 101 0.460311 AGGAGAAACCCTATGCGACG 59.540 55.000 0.00 0.00 40.05 5.12
104 107 3.436761 CCGTAGAGGAGGAGAAACCCTAT 60.437 52.174 0.00 0.00 45.00 2.57
136 156 2.158842 AGCATATCAACCAGTCCTCTGC 60.159 50.000 0.00 0.00 40.09 4.26
139 159 3.550437 ACAGCATATCAACCAGTCCTC 57.450 47.619 0.00 0.00 0.00 3.71
163 183 6.806249 GTGATGATTAAAAGAAACATCGCCAA 59.194 34.615 0.00 0.00 40.37 4.52
168 188 7.970614 GGGTGAGTGATGATTAAAAGAAACATC 59.029 37.037 0.00 0.00 38.13 3.06
184 204 1.381327 ATCGGGTCGGGTGAGTGAT 60.381 57.895 0.00 0.00 0.00 3.06
189 209 2.355986 CCAAGATCGGGTCGGGTGA 61.356 63.158 0.00 0.00 0.00 4.02
190 210 2.186903 CCAAGATCGGGTCGGGTG 59.813 66.667 0.00 0.00 0.00 4.61
191 211 3.081409 CCCAAGATCGGGTCGGGT 61.081 66.667 5.84 0.00 41.83 5.28
209 229 1.668751 GGAATCAATAAGCGGCGTTCA 59.331 47.619 9.37 0.00 0.00 3.18
234 254 8.646900 AGCCTCTATCTAAAATAAAGACTGGAG 58.353 37.037 0.00 0.00 0.00 3.86
249 271 9.561069 GGACAAAATTTATTGAGCCTCTATCTA 57.439 33.333 0.00 0.00 34.38 1.98
250 272 8.277918 AGGACAAAATTTATTGAGCCTCTATCT 58.722 33.333 0.00 0.00 35.36 1.98
251 273 8.348507 CAGGACAAAATTTATTGAGCCTCTATC 58.651 37.037 0.00 0.00 36.89 2.08
252 274 7.836183 ACAGGACAAAATTTATTGAGCCTCTAT 59.164 33.333 0.00 0.00 36.89 1.98
259 281 5.095490 GGCGACAGGACAAAATTTATTGAG 58.905 41.667 0.00 0.00 34.38 3.02
276 298 2.407616 CTGATAGACGCGGCGACA 59.592 61.111 30.94 17.47 0.00 4.35
282 304 1.299468 GGACCAGCTGATAGACGCG 60.299 63.158 17.39 3.53 0.00 6.01
292 314 2.029073 CACGACAACGGACCAGCT 59.971 61.111 0.00 0.00 44.46 4.24
296 318 1.561250 CGAAACACGACAACGGACC 59.439 57.895 0.00 0.00 45.77 4.46
318 340 1.369625 ATGCTAGTTACACGGCAAGC 58.630 50.000 0.00 0.00 35.99 4.01
323 345 4.750098 CCAGGATAAATGCTAGTTACACGG 59.250 45.833 0.00 0.00 0.00 4.94
331 353 5.013495 TGGATTCCTCCAGGATAAATGCTAG 59.987 44.000 13.42 0.00 46.95 3.42
345 367 0.465278 GCAAGGAGCTGGATTCCTCC 60.465 60.000 3.95 2.83 44.24 4.30
346 368 0.465278 GGCAAGGAGCTGGATTCCTC 60.465 60.000 3.95 0.00 44.24 3.71
347 369 1.611965 GGCAAGGAGCTGGATTCCT 59.388 57.895 3.95 0.00 46.97 3.36
370 392 0.174845 CAGAATCGGTAGGCGGAACA 59.825 55.000 0.00 0.00 0.00 3.18
388 410 6.850752 TTAGATCCAGTGACTAATGTGACA 57.149 37.500 0.00 0.00 32.67 3.58
397 419 7.121759 CCATGTCAAAAATTAGATCCAGTGACT 59.878 37.037 0.00 0.00 36.09 3.41
427 450 3.986277 ACATAACCGTCAACCGATATCC 58.014 45.455 0.00 0.00 39.56 2.59
434 459 3.365820 CGACTGTTACATAACCGTCAACC 59.634 47.826 19.76 1.87 45.05 3.77
663 700 8.757789 CATGTAATCGCAGCAAAAATTAATCAT 58.242 29.630 0.00 0.00 0.00 2.45
691 728 5.839621 ACAAGTAGCCGTTGTCGATTATAT 58.160 37.500 0.00 0.00 39.71 0.86
692 729 5.252969 ACAAGTAGCCGTTGTCGATTATA 57.747 39.130 0.00 0.00 39.71 0.98
728 765 3.483954 GCAGCAAGCCTATCTTCCA 57.516 52.632 0.00 0.00 37.23 3.53
757 794 3.006940 TGAATCAGTCGGCATTAACCAC 58.993 45.455 0.00 0.00 0.00 4.16
762 799 2.499693 TCTGGTGAATCAGTCGGCATTA 59.500 45.455 0.00 0.00 36.25 1.90
808 853 1.068434 TCACGTGTCACTGCAATGAGA 59.932 47.619 16.51 0.00 0.00 3.27
809 854 1.193203 GTCACGTGTCACTGCAATGAG 59.807 52.381 16.51 0.00 0.00 2.90
822 867 3.641437 ATCAAACAAATGGGTCACGTG 57.359 42.857 9.94 9.94 0.00 4.49
874 919 7.058354 CGTTCATGATATAGCATTTTAACGCAC 59.942 37.037 20.63 4.24 33.52 5.34
993 1040 3.690460 ACCAGAAGGCTTCATGGTTTAG 58.310 45.455 29.69 15.90 37.69 1.85
1149 1196 1.545582 CCACCCTTGCCAATTACACTG 59.454 52.381 0.00 0.00 0.00 3.66
1314 1364 2.487934 CAAACAGGCTCCCTATCATCG 58.512 52.381 0.00 0.00 29.64 3.84
1455 1505 4.002982 TGACAGAACCAGATTTTCCGATG 58.997 43.478 0.00 0.00 0.00 3.84
1458 1508 4.002982 TGATGACAGAACCAGATTTTCCG 58.997 43.478 0.00 0.00 0.00 4.30
1604 1655 0.675633 GTTGGCACAGCTCACCAAAT 59.324 50.000 12.06 0.00 44.67 2.32
1659 1710 5.128919 ACTAAAGGATTGCTGCTTCATAGG 58.871 41.667 0.00 0.00 30.91 2.57
1664 1715 7.371159 ACTAAAAACTAAAGGATTGCTGCTTC 58.629 34.615 0.00 0.00 30.91 3.86
1726 1777 5.085219 TCTGCACCATGATAGAGAGATGAT 58.915 41.667 0.00 0.00 0.00 2.45
1861 1913 6.238759 GGCATTGGTTTGGTATTCTAGATGTC 60.239 42.308 0.00 0.00 0.00 3.06
1879 1931 6.151663 TCATGATAAATCAACAGGCATTGG 57.848 37.500 0.00 0.00 40.69 3.16
1963 2071 6.713762 AAGTCAACCTTCATCAATTTGACA 57.286 33.333 13.57 0.00 45.57 3.58
1969 2077 6.070656 TCCTGAAAAGTCAACCTTCATCAAT 58.929 36.000 0.00 0.00 32.01 2.57
1979 2087 6.399986 GCGCATTAATTTCCTGAAAAGTCAAC 60.400 38.462 0.30 0.00 33.56 3.18
1985 2093 5.048083 AGAGTGCGCATTAATTTCCTGAAAA 60.048 36.000 15.91 0.00 33.56 2.29
1989 2097 5.679734 ATAGAGTGCGCATTAATTTCCTG 57.320 39.130 15.91 0.00 0.00 3.86
2023 2178 0.682292 GGGAGGTCTATAGTGCTGCC 59.318 60.000 0.00 0.00 0.00 4.85
2137 2292 4.937620 AGTGTATATGAGCACCACACAAAG 59.062 41.667 6.01 0.00 41.49 2.77
2153 2308 5.313520 TCGGAATTGTTCGACAGTGTATA 57.686 39.130 0.00 0.00 0.00 1.47
2154 2309 4.182693 TCGGAATTGTTCGACAGTGTAT 57.817 40.909 0.00 0.00 0.00 2.29
2174 2329 8.606040 AAGAATATAGCAGAGCTCAAAAGATC 57.394 34.615 17.77 4.56 40.44 2.75
2194 2349 8.707796 ATGCTGAAGAATGGATATTGAAGAAT 57.292 30.769 0.00 0.00 0.00 2.40
2223 2381 8.828751 TGGTACTGGTAAGAGTTAATAATTGGT 58.171 33.333 0.00 0.00 0.00 3.67
2242 2400 8.458843 CCCAGTTATCTGTTAAAAATGGTACTG 58.541 37.037 3.43 0.00 39.82 2.74
2314 2472 6.333416 TCTCTTTCGATGGACATTTGTAGAG 58.667 40.000 0.00 0.00 0.00 2.43
2369 2527 6.389869 TGAAGGAAGTATAATGGTTGGAGGAT 59.610 38.462 0.00 0.00 0.00 3.24
2578 2736 6.031751 TGAACATTTTGGGGTGTTATAAGC 57.968 37.500 0.00 0.00 38.57 3.09
2678 2836 6.377146 TGCACCACTTTCTTTCCTTATATTCC 59.623 38.462 0.00 0.00 0.00 3.01
2754 2912 4.159135 GGTCTAACCTCAGTGGACGAAATA 59.841 45.833 0.00 0.00 39.71 1.40
2820 2979 5.395642 GTGTCACCTCAAACGAAAAGAAAA 58.604 37.500 0.00 0.00 0.00 2.29
2824 2983 3.334272 GGTGTCACCTCAAACGAAAAG 57.666 47.619 15.22 0.00 34.73 2.27
3144 3306 8.342634 ACATGCAATAAACTCGTAAATACATCC 58.657 33.333 0.00 0.00 0.00 3.51
3273 3436 2.025887 ACAGTTAGCTTCCCATCCTTGG 60.026 50.000 0.00 0.00 43.23 3.61
3311 3474 3.609853 TCGGAAAGCTGCTTGAATACAT 58.390 40.909 16.73 0.00 0.00 2.29
3362 3525 1.026182 TCATGGCGCAATGGAGTGAC 61.026 55.000 24.33 0.00 0.00 3.67
3416 3579 2.941453 TACAAGCTGCTACGAGGAAG 57.059 50.000 0.90 0.00 0.00 3.46
3513 3676 4.219944 TCACAAACTTATAGGCACGTCTCT 59.780 41.667 0.00 0.00 0.00 3.10
3550 3714 2.905085 CAGCCTGATGGAGGATATCACT 59.095 50.000 4.83 0.00 46.33 3.41
3645 3809 3.617284 CACGGGTTAGAAAGGGCTTATT 58.383 45.455 0.00 0.00 0.00 1.40
3650 3814 0.251073 TAGCACGGGTTAGAAAGGGC 59.749 55.000 0.00 0.00 0.00 5.19
3661 3825 5.179555 GGCTATTCTTAAAAGATAGCACGGG 59.820 44.000 21.89 0.00 40.24 5.28
3669 3833 3.883489 GGGCACGGCTATTCTTAAAAGAT 59.117 43.478 0.00 0.00 34.49 2.40
3670 3834 3.275999 GGGCACGGCTATTCTTAAAAGA 58.724 45.455 0.00 0.00 0.00 2.52
3671 3835 2.357952 GGGGCACGGCTATTCTTAAAAG 59.642 50.000 0.00 0.00 0.00 2.27
3717 3911 1.061546 TTGTGGGACCAAGGGAGTAC 58.938 55.000 0.00 0.00 0.00 2.73
3718 3912 2.053747 ATTGTGGGACCAAGGGAGTA 57.946 50.000 0.00 0.00 0.00 2.59
3719 3913 2.053747 TATTGTGGGACCAAGGGAGT 57.946 50.000 0.00 0.00 0.00 3.85
3720 3914 4.412199 TCTTATATTGTGGGACCAAGGGAG 59.588 45.833 0.00 0.00 0.00 4.30
3721 3915 4.165372 GTCTTATATTGTGGGACCAAGGGA 59.835 45.833 0.00 0.00 0.00 4.20
3722 3916 4.461198 GTCTTATATTGTGGGACCAAGGG 58.539 47.826 0.00 0.00 0.00 3.95
3723 3917 4.127171 CGTCTTATATTGTGGGACCAAGG 58.873 47.826 0.00 0.00 0.00 3.61
3724 3918 3.560068 GCGTCTTATATTGTGGGACCAAG 59.440 47.826 0.00 0.00 0.00 3.61
3725 3919 3.199071 AGCGTCTTATATTGTGGGACCAA 59.801 43.478 0.00 0.00 0.00 3.67
3726 3920 2.769663 AGCGTCTTATATTGTGGGACCA 59.230 45.455 0.00 0.00 0.00 4.02
3727 3921 3.470645 AGCGTCTTATATTGTGGGACC 57.529 47.619 0.00 0.00 0.00 4.46
3728 3922 8.773404 AATAATAGCGTCTTATATTGTGGGAC 57.227 34.615 0.00 0.00 0.00 4.46
3729 3923 9.214957 CAAATAATAGCGTCTTATATTGTGGGA 57.785 33.333 0.00 0.00 0.00 4.37
3730 3924 8.450964 CCAAATAATAGCGTCTTATATTGTGGG 58.549 37.037 0.00 0.00 0.00 4.61
3731 3925 8.450964 CCCAAATAATAGCGTCTTATATTGTGG 58.549 37.037 0.00 0.00 0.00 4.17
3732 3926 8.999431 ACCCAAATAATAGCGTCTTATATTGTG 58.001 33.333 0.00 0.00 0.00 3.33
3733 3927 9.216117 GACCCAAATAATAGCGTCTTATATTGT 57.784 33.333 0.00 0.00 0.00 2.71
3734 3928 9.436957 AGACCCAAATAATAGCGTCTTATATTG 57.563 33.333 0.00 0.00 0.00 1.90
3739 3933 9.841295 AATAAAGACCCAAATAATAGCGTCTTA 57.159 29.630 0.00 0.00 39.10 2.10
3740 3934 8.621286 CAATAAAGACCCAAATAATAGCGTCTT 58.379 33.333 0.00 0.00 41.14 3.01
3741 3935 7.773690 ACAATAAAGACCCAAATAATAGCGTCT 59.226 33.333 0.00 0.00 32.10 4.18
3742 3936 7.855904 CACAATAAAGACCCAAATAATAGCGTC 59.144 37.037 0.00 0.00 0.00 5.19
3743 3937 7.201785 CCACAATAAAGACCCAAATAATAGCGT 60.202 37.037 0.00 0.00 0.00 5.07
3744 3938 7.138736 CCACAATAAAGACCCAAATAATAGCG 58.861 38.462 0.00 0.00 0.00 4.26
3745 3939 7.286775 TCCCACAATAAAGACCCAAATAATAGC 59.713 37.037 0.00 0.00 0.00 2.97
3746 3940 8.760980 TCCCACAATAAAGACCCAAATAATAG 57.239 34.615 0.00 0.00 0.00 1.73
3747 3941 7.782644 CCTCCCACAATAAAGACCCAAATAATA 59.217 37.037 0.00 0.00 0.00 0.98
3748 3942 6.611236 CCTCCCACAATAAAGACCCAAATAAT 59.389 38.462 0.00 0.00 0.00 1.28
3749 3943 5.955355 CCTCCCACAATAAAGACCCAAATAA 59.045 40.000 0.00 0.00 0.00 1.40
3750 3944 5.515106 CCTCCCACAATAAAGACCCAAATA 58.485 41.667 0.00 0.00 0.00 1.40
3751 3945 4.352893 CCTCCCACAATAAAGACCCAAAT 58.647 43.478 0.00 0.00 0.00 2.32
3752 3946 3.501385 CCCTCCCACAATAAAGACCCAAA 60.501 47.826 0.00 0.00 0.00 3.28
3753 3947 2.042433 CCCTCCCACAATAAAGACCCAA 59.958 50.000 0.00 0.00 0.00 4.12
3754 3948 1.638589 CCCTCCCACAATAAAGACCCA 59.361 52.381 0.00 0.00 0.00 4.51
3755 3949 1.920351 TCCCTCCCACAATAAAGACCC 59.080 52.381 0.00 0.00 0.00 4.46
3756 3950 2.092375 CCTCCCTCCCACAATAAAGACC 60.092 54.545 0.00 0.00 0.00 3.85
3757 3951 2.092375 CCCTCCCTCCCACAATAAAGAC 60.092 54.545 0.00 0.00 0.00 3.01
3758 3952 2.205342 CCCTCCCTCCCACAATAAAGA 58.795 52.381 0.00 0.00 0.00 2.52
3759 3953 2.173569 CTCCCTCCCTCCCACAATAAAG 59.826 54.545 0.00 0.00 0.00 1.85
3760 3954 2.205342 CTCCCTCCCTCCCACAATAAA 58.795 52.381 0.00 0.00 0.00 1.40
3761 3955 1.082194 ACTCCCTCCCTCCCACAATAA 59.918 52.381 0.00 0.00 0.00 1.40
3762 3956 0.722676 ACTCCCTCCCTCCCACAATA 59.277 55.000 0.00 0.00 0.00 1.90
3763 3957 0.722676 TACTCCCTCCCTCCCACAAT 59.277 55.000 0.00 0.00 0.00 2.71
3764 3958 0.042731 CTACTCCCTCCCTCCCACAA 59.957 60.000 0.00 0.00 0.00 3.33
3765 3959 1.153695 ACTACTCCCTCCCTCCCACA 61.154 60.000 0.00 0.00 0.00 4.17
3766 3960 0.042881 AACTACTCCCTCCCTCCCAC 59.957 60.000 0.00 0.00 0.00 4.61
3767 3961 1.702699 TAACTACTCCCTCCCTCCCA 58.297 55.000 0.00 0.00 0.00 4.37
3768 3962 3.347759 AATAACTACTCCCTCCCTCCC 57.652 52.381 0.00 0.00 0.00 4.30
3769 3963 6.239915 CCAAATAATAACTACTCCCTCCCTCC 60.240 46.154 0.00 0.00 0.00 4.30
3770 3964 6.239915 CCCAAATAATAACTACTCCCTCCCTC 60.240 46.154 0.00 0.00 0.00 4.30
3771 3965 5.611408 CCCAAATAATAACTACTCCCTCCCT 59.389 44.000 0.00 0.00 0.00 4.20
3772 3966 5.371769 ACCCAAATAATAACTACTCCCTCCC 59.628 44.000 0.00 0.00 0.00 4.30
3773 3967 6.329460 AGACCCAAATAATAACTACTCCCTCC 59.671 42.308 0.00 0.00 0.00 4.30
3774 3968 7.376335 AGACCCAAATAATAACTACTCCCTC 57.624 40.000 0.00 0.00 0.00 4.30
3775 3969 7.766736 AAGACCCAAATAATAACTACTCCCT 57.233 36.000 0.00 0.00 0.00 4.20
3814 4008 7.966111 GCAATCAGCAAAATGAAATACAATCA 58.034 30.769 0.00 0.00 44.79 2.57
3974 4168 0.318762 GTCTGAGGGCACTCTTTCGT 59.681 55.000 18.70 0.00 44.29 3.85
4003 4313 8.654997 ACTAATGGATTGATATTACAGCAGACT 58.345 33.333 0.00 0.00 0.00 3.24
4043 4441 7.168905 AGGGAGTAGAAAACAACCTATTCTTG 58.831 38.462 0.00 0.00 35.44 3.02
4065 4463 5.634020 CGCTCTTATATTTCTTTACGGAGGG 59.366 44.000 0.00 0.00 0.00 4.30
4066 4464 6.214399 ACGCTCTTATATTTCTTTACGGAGG 58.786 40.000 0.00 0.00 0.00 4.30
4067 4465 7.695869 AACGCTCTTATATTTCTTTACGGAG 57.304 36.000 0.00 0.00 0.00 4.63
4068 4466 9.241317 CTAAACGCTCTTATATTTCTTTACGGA 57.759 33.333 0.00 0.00 0.00 4.69
4069 4467 9.241317 TCTAAACGCTCTTATATTTCTTTACGG 57.759 33.333 0.00 0.00 0.00 4.02
4087 4485 9.988107 AGATCACTACTTCAGCGATCTAAACGC 62.988 44.444 0.00 0.00 46.63 4.84
4088 4486 4.659088 TCACTACTTCAGCGATCTAAACG 58.341 43.478 0.00 0.00 0.00 3.60
4089 4487 6.500041 AGATCACTACTTCAGCGATCTAAAC 58.500 40.000 3.57 0.00 46.63 2.01
4090 4488 6.701145 AGATCACTACTTCAGCGATCTAAA 57.299 37.500 3.57 0.00 46.63 1.85
4092 4490 7.282450 TGTTTAGATCACTACTTCAGCGATCTA 59.718 37.037 7.56 7.56 46.63 1.98
4094 4492 6.197468 GTGTTTAGATCACTACTTCAGCGATC 59.803 42.308 0.00 0.00 41.35 3.69
4095 4493 6.037098 GTGTTTAGATCACTACTTCAGCGAT 58.963 40.000 0.00 0.00 33.59 4.58
4096 4494 5.399858 GTGTTTAGATCACTACTTCAGCGA 58.600 41.667 0.00 0.00 33.59 4.93
4097 4495 4.263209 CGTGTTTAGATCACTACTTCAGCG 59.737 45.833 0.00 0.00 34.14 5.18
4098 4496 4.031878 GCGTGTTTAGATCACTACTTCAGC 59.968 45.833 0.00 0.00 34.14 4.26
4099 4497 5.403246 AGCGTGTTTAGATCACTACTTCAG 58.597 41.667 0.00 0.00 34.14 3.02
4100 4498 5.386958 AGCGTGTTTAGATCACTACTTCA 57.613 39.130 0.00 0.00 34.14 3.02
4101 4499 7.988904 ATAAGCGTGTTTAGATCACTACTTC 57.011 36.000 0.00 0.00 34.37 3.01
4106 4504 9.601217 AAGAAATATAAGCGTGTTTAGATCACT 57.399 29.630 0.00 0.00 34.14 3.41
4107 4505 9.851043 GAAGAAATATAAGCGTGTTTAGATCAC 57.149 33.333 0.00 0.00 0.00 3.06
4108 4506 9.594478 TGAAGAAATATAAGCGTGTTTAGATCA 57.406 29.630 0.00 0.00 0.00 2.92
4109 4507 9.851043 GTGAAGAAATATAAGCGTGTTTAGATC 57.149 33.333 0.00 0.00 0.00 2.75
4110 4508 8.540492 CGTGAAGAAATATAAGCGTGTTTAGAT 58.460 33.333 0.00 0.00 0.00 1.98
4111 4509 7.009815 CCGTGAAGAAATATAAGCGTGTTTAGA 59.990 37.037 0.00 0.00 0.00 2.10
4112 4510 7.009815 TCCGTGAAGAAATATAAGCGTGTTTAG 59.990 37.037 0.00 0.00 0.00 1.85
4113 4511 6.812656 TCCGTGAAGAAATATAAGCGTGTTTA 59.187 34.615 0.00 0.00 0.00 2.01
4114 4512 5.640357 TCCGTGAAGAAATATAAGCGTGTTT 59.360 36.000 0.00 0.00 0.00 2.83
4115 4513 5.172934 TCCGTGAAGAAATATAAGCGTGTT 58.827 37.500 0.00 0.00 0.00 3.32
4116 4514 4.751060 TCCGTGAAGAAATATAAGCGTGT 58.249 39.130 0.00 0.00 0.00 4.49
4117 4515 4.209288 CCTCCGTGAAGAAATATAAGCGTG 59.791 45.833 0.00 0.00 0.00 5.34
4118 4516 4.369182 CCTCCGTGAAGAAATATAAGCGT 58.631 43.478 0.00 0.00 0.00 5.07
4119 4517 3.741344 CCCTCCGTGAAGAAATATAAGCG 59.259 47.826 0.00 0.00 0.00 4.68
4120 4518 4.957296 TCCCTCCGTGAAGAAATATAAGC 58.043 43.478 0.00 0.00 0.00 3.09
4121 4519 6.163135 ACTCCCTCCGTGAAGAAATATAAG 57.837 41.667 0.00 0.00 0.00 1.73
4122 4520 6.837568 AGTACTCCCTCCGTGAAGAAATATAA 59.162 38.462 0.00 0.00 0.00 0.98
4123 4521 6.371278 AGTACTCCCTCCGTGAAGAAATATA 58.629 40.000 0.00 0.00 0.00 0.86
4124 4522 5.209659 AGTACTCCCTCCGTGAAGAAATAT 58.790 41.667 0.00 0.00 0.00 1.28
4125 4523 4.607239 AGTACTCCCTCCGTGAAGAAATA 58.393 43.478 0.00 0.00 0.00 1.40
4126 4524 3.442076 AGTACTCCCTCCGTGAAGAAAT 58.558 45.455 0.00 0.00 0.00 2.17
4127 4525 2.885616 AGTACTCCCTCCGTGAAGAAA 58.114 47.619 0.00 0.00 0.00 2.52
4128 4526 2.599408 AGTACTCCCTCCGTGAAGAA 57.401 50.000 0.00 0.00 0.00 2.52
4129 4527 2.575279 AGTAGTACTCCCTCCGTGAAGA 59.425 50.000 0.00 0.00 0.00 2.87
4130 4528 3.002038 AGTAGTACTCCCTCCGTGAAG 57.998 52.381 0.00 0.00 0.00 3.02
4131 4529 4.574674 TTAGTAGTACTCCCTCCGTGAA 57.425 45.455 5.96 0.00 0.00 3.18
4132 4530 4.458397 CATTAGTAGTACTCCCTCCGTGA 58.542 47.826 5.96 0.00 0.00 4.35
4133 4531 3.568853 CCATTAGTAGTACTCCCTCCGTG 59.431 52.174 5.96 0.00 0.00 4.94
4134 4532 3.461085 TCCATTAGTAGTACTCCCTCCGT 59.539 47.826 5.96 0.00 0.00 4.69
4135 4533 4.073549 CTCCATTAGTAGTACTCCCTCCG 58.926 52.174 5.96 0.00 0.00 4.63
4136 4534 5.064314 ACTCCATTAGTAGTACTCCCTCC 57.936 47.826 5.96 0.00 36.36 4.30
4254 4657 4.499696 CCAATCCACTCTTTGGTGTTGAAC 60.500 45.833 10.64 0.00 46.97 3.18
4255 4658 3.636300 CCAATCCACTCTTTGGTGTTGAA 59.364 43.478 10.64 0.00 46.97 2.69
4256 4659 3.221771 CCAATCCACTCTTTGGTGTTGA 58.778 45.455 10.64 0.00 46.97 3.18
4257 4660 3.648339 CCAATCCACTCTTTGGTGTTG 57.352 47.619 0.00 0.00 46.97 3.33
4263 4666 3.190118 GCTTCAGACCAATCCACTCTTTG 59.810 47.826 0.00 0.00 0.00 2.77
4264 4667 3.181440 TGCTTCAGACCAATCCACTCTTT 60.181 43.478 0.00 0.00 0.00 2.52
4279 4682 3.476552 TCCTGTACAAAGGTTGCTTCAG 58.523 45.455 0.00 0.00 38.58 3.02
4479 4955 1.733912 GCAACATGCTCATGACGAGAA 59.266 47.619 15.96 0.00 45.45 2.87
4592 5071 6.909895 CGATAGAGCTGACATATATCCTTTCG 59.090 42.308 0.00 0.00 39.76 3.46
4629 5120 4.094887 CACAGTTTTTGATCTACGGGATGG 59.905 45.833 0.00 0.00 34.33 3.51
4668 5165 3.549794 AGCATGAGGTTTATTGGAGAGC 58.450 45.455 0.00 0.00 0.00 4.09
4803 5301 9.082313 AGCATAAAGAATTGGTTATGAATAGGG 57.918 33.333 16.58 0.00 39.17 3.53
4836 5334 4.257731 TGGCAAACGTATAAGCAATCAGA 58.742 39.130 0.00 0.00 0.00 3.27
4846 5344 3.070446 CCTCCCATACTGGCAAACGTATA 59.930 47.826 0.00 0.00 35.79 1.47
4854 5352 3.096495 GCCCCTCCCATACTGGCA 61.096 66.667 0.00 0.00 41.76 4.92
4873 5383 3.206150 TCTGACTGAAGTGGCAAAAGAC 58.794 45.455 0.00 0.00 0.00 3.01
4929 5439 6.255020 GGATATCTAAATACGGTATTGCCACG 59.745 42.308 13.77 2.51 36.97 4.94
5013 5524 6.043012 AGTCTATCATGAAAAGGATGAGGAGG 59.957 42.308 0.00 0.00 33.38 4.30
5084 5596 2.155732 CCACGTGTTCGACTGAAGATTG 59.844 50.000 15.65 0.00 40.62 2.67
5126 5639 5.456474 TATCTTAGGATGATGCACCATGCAA 60.456 40.000 15.76 6.33 43.69 4.08
5145 5665 6.893020 ATTAGACAAGTCCTTGGGTATCTT 57.107 37.500 11.45 0.00 44.45 2.40
5259 5855 4.702274 ATGGGCGGGCAGGCTTTT 62.702 61.111 11.42 0.00 45.89 2.27
5266 5862 2.117206 AAAGTTCATGGGCGGGCA 59.883 55.556 3.27 0.00 0.00 5.36
5267 5863 2.212900 GACAAAGTTCATGGGCGGGC 62.213 60.000 0.00 0.00 0.00 6.13
5268 5864 0.893270 TGACAAAGTTCATGGGCGGG 60.893 55.000 0.00 0.00 0.00 6.13
5269 5865 1.176527 ATGACAAAGTTCATGGGCGG 58.823 50.000 0.00 0.00 34.79 6.13
5270 5866 3.009723 AGTATGACAAAGTTCATGGGCG 58.990 45.455 0.00 0.00 36.84 6.13
5271 5867 4.265073 AGAGTATGACAAAGTTCATGGGC 58.735 43.478 0.00 0.00 36.84 5.36
5315 5921 4.087182 GGGGAGTAAAGAAGGAAAAAGGG 58.913 47.826 0.00 0.00 0.00 3.95
5389 5995 9.173939 CTGTTTTCTTATGTCTTGCTTTAAGTG 57.826 33.333 0.00 0.00 37.65 3.16
5425 6032 3.495453 GCTTGTAAGGAGGTGTTGGTACA 60.495 47.826 0.00 0.00 0.00 2.90
5426 6033 3.072211 GCTTGTAAGGAGGTGTTGGTAC 58.928 50.000 0.00 0.00 0.00 3.34
5512 6130 4.767409 AGGTACTTCAAAATTTGGAGCCTC 59.233 41.667 13.63 4.88 40.06 4.70


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.