Multiple sequence alignment - TraesCS5B01G551300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G551300 chr5B 100.000 4995 0 0 1 4995 702610218 702605224 0.000000e+00 9225
1 TraesCS5B01G551300 chr5B 98.872 4257 37 4 1 4248 702742819 702738565 0.000000e+00 7585
2 TraesCS5B01G551300 chr5B 96.949 2753 58 9 1 2742 702628762 702626025 0.000000e+00 4595
3 TraesCS5B01G551300 chr5B 96.513 2753 61 10 1 2742 702760993 702758265 0.000000e+00 4519
4 TraesCS5B01G551300 chr5B 97.303 1446 26 5 3 1443 702802281 702800844 0.000000e+00 2442
5 TraesCS5B01G551300 chr5B 97.418 1433 30 4 2823 4248 702796833 702795401 0.000000e+00 2435
6 TraesCS5B01G551300 chr5B 97.267 1427 32 3 2823 4248 702626027 702624607 0.000000e+00 2412
7 TraesCS5B01G551300 chr5B 97.069 1433 35 4 2823 4248 702645189 702643757 0.000000e+00 2407
8 TraesCS5B01G551300 chr5B 97.063 1430 30 5 19 1443 702650368 702648946 0.000000e+00 2398
9 TraesCS5B01G551300 chr5B 96.987 1427 36 3 2823 4248 702758267 702756847 0.000000e+00 2390
10 TraesCS5B01G551300 chr5B 96.420 1313 33 7 1439 2742 702646494 702645187 0.000000e+00 2152
11 TraesCS5B01G551300 chr5B 95.493 1309 32 13 1435 2742 702798113 702796831 0.000000e+00 2065
12 TraesCS5B01G551300 chr5B 98.458 389 5 1 4608 4995 702738578 702738190 0.000000e+00 684
13 TraesCS5B01G551300 chr5B 97.165 388 11 0 4608 4995 702643770 702643383 0.000000e+00 656
14 TraesCS5B01G551300 chr5B 97.165 388 11 0 4608 4995 702756860 702756473 0.000000e+00 656
15 TraesCS5B01G551300 chr5B 96.907 388 12 0 4608 4995 702624620 702624233 0.000000e+00 651
16 TraesCS5B01G551300 chr5B 96.615 384 12 1 4608 4990 702795414 702795031 1.960000e-178 636
17 TraesCS5B01G551300 chr5B 85.425 247 29 6 2631 2872 615781548 615781304 2.990000e-62 250
18 TraesCS5B01G551300 chr4A 82.026 1096 148 27 3173 4247 629120645 629121712 0.000000e+00 887
19 TraesCS5B01G551300 chr4A 88.040 301 28 6 933 1230 629110404 629110699 2.860000e-92 350
20 TraesCS5B01G551300 chr4A 77.912 249 48 6 2632 2876 660207604 660207849 1.120000e-31 148
21 TraesCS5B01G551300 chrUn 81.296 1096 152 26 3173 4247 351726217 351727280 0.000000e+00 839
22 TraesCS5B01G551300 chrUn 81.204 1096 153 26 3173 4247 224674195 224675258 0.000000e+00 833
23 TraesCS5B01G551300 chrUn 81.204 1096 153 26 3173 4247 351703717 351704780 0.000000e+00 833
24 TraesCS5B01G551300 chrUn 100.000 427 0 0 2641 3067 476503517 476503091 0.000000e+00 789
25 TraesCS5B01G551300 chrUn 84.281 827 102 19 3229 4038 110464836 110465651 0.000000e+00 782
26 TraesCS5B01G551300 chrUn 79.723 577 90 13 3693 4250 471904712 471904144 4.690000e-105 392
27 TraesCS5B01G551300 chrUn 84.789 355 50 2 1353 1706 110463034 110463385 2.210000e-93 353
28 TraesCS5B01G551300 chrUn 91.120 259 23 0 2240 2498 224673458 224673716 7.960000e-93 351
29 TraesCS5B01G551300 chrUn 91.120 259 23 0 2240 2498 340347170 340346912 7.960000e-93 351
30 TraesCS5B01G551300 chrUn 91.120 259 23 0 2240 2498 351702980 351703238 7.960000e-93 351
31 TraesCS5B01G551300 chrUn 86.061 330 32 6 964 1281 224672281 224672608 4.790000e-90 342
32 TraesCS5B01G551300 chrUn 86.061 330 32 6 964 1281 340348347 340348020 4.790000e-90 342
33 TraesCS5B01G551300 chrUn 85.758 330 33 6 964 1281 327006574 327006901 2.230000e-88 337
34 TraesCS5B01G551300 chrUn 84.463 354 34 14 3173 3522 340346433 340346097 3.730000e-86 329
35 TraesCS5B01G551300 chrUn 83.258 221 29 5 2954 3171 224673855 224674070 3.940000e-46 196
36 TraesCS5B01G551300 chrUn 83.258 221 29 5 2954 3171 340346773 340346558 3.940000e-46 196
37 TraesCS5B01G551300 chrUn 83.258 221 29 5 2954 3171 351703377 351703592 3.940000e-46 196
38 TraesCS5B01G551300 chr1B 98.870 354 4 0 4243 4596 426467471 426467824 2.540000e-177 632
39 TraesCS5B01G551300 chr2A 98.857 350 4 0 4247 4596 388681864 388681515 4.250000e-175 625
40 TraesCS5B01G551300 chr2A 98.319 357 5 1 4240 4596 490662979 490663334 4.250000e-175 625
41 TraesCS5B01G551300 chr2A 98.580 352 5 0 4245 4596 568310174 568309823 1.530000e-174 623
42 TraesCS5B01G551300 chr1A 98.854 349 4 0 4248 4596 256813783 256813435 1.530000e-174 623
43 TraesCS5B01G551300 chr6B 97.778 360 6 2 4249 4608 232063920 232064277 1.980000e-173 619
44 TraesCS5B01G551300 chr5A 97.521 363 5 4 4249 4610 674121753 674122112 7.100000e-173 617
45 TraesCS5B01G551300 chr5A 83.028 601 69 20 1366 1965 640400306 640400874 9.590000e-142 514
46 TraesCS5B01G551300 chr5A 90.000 270 27 0 2243 2512 640401586 640401855 2.860000e-92 350
47 TraesCS5B01G551300 chr3A 98.563 348 4 1 4249 4596 291172249 291172595 9.190000e-172 614
48 TraesCS5B01G551300 chr3A 85.714 252 31 5 2631 2879 514270819 514271068 1.380000e-65 261
49 TraesCS5B01G551300 chr3A 80.556 252 40 6 2634 2878 740063620 740063371 8.540000e-43 185
50 TraesCS5B01G551300 chr3A 91.304 92 6 2 2536 2625 739801278 739801369 1.890000e-24 124
51 TraesCS5B01G551300 chr4B 96.257 374 11 3 4249 4620 302734854 302734482 1.190000e-170 610
52 TraesCS5B01G551300 chr4B 81.320 803 100 24 3229 4023 660491592 660492352 1.540000e-169 606
53 TraesCS5B01G551300 chr4B 79.257 323 64 3 1 321 509279341 509279020 6.510000e-54 222
54 TraesCS5B01G551300 chr2D 80.374 642 90 24 3419 4040 6207060 6207685 5.890000e-124 455
55 TraesCS5B01G551300 chr7D 83.988 331 50 3 1 329 29967543 29967214 1.040000e-81 315
56 TraesCS5B01G551300 chr7D 84.034 238 32 4 2629 2862 178613836 178614071 1.810000e-54 224
57 TraesCS5B01G551300 chr7D 84.358 179 27 1 2699 2876 409808316 409808138 1.850000e-39 174
58 TraesCS5B01G551300 chr7D 86.087 115 11 5 2536 2646 377606683 377606796 8.780000e-23 119
59 TraesCS5B01G551300 chr7A 78.592 355 49 13 1 329 92810901 92811254 5.070000e-50 209
60 TraesCS5B01G551300 chr6D 81.102 254 34 13 2631 2877 379578777 379579023 1.840000e-44 191
61 TraesCS5B01G551300 chr7B 87.302 126 13 3 2536 2658 372327664 372327789 1.870000e-29 141
62 TraesCS5B01G551300 chr4D 90.385 104 9 1 224 327 494434781 494434679 8.720000e-28 135
63 TraesCS5B01G551300 chr4D 85.593 118 11 4 2513 2624 402553150 402553267 8.780000e-23 119


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G551300 chr5B 702605224 702610218 4994 True 9225.000000 9225 100.000000 1 4995 1 chr5B.!!$R2 4994
1 TraesCS5B01G551300 chr5B 702738190 702742819 4629 True 4134.500000 7585 98.665000 1 4995 2 chr5B.!!$R5 4994
2 TraesCS5B01G551300 chr5B 702624233 702628762 4529 True 2552.666667 4595 97.041000 1 4995 3 chr5B.!!$R3 4994
3 TraesCS5B01G551300 chr5B 702756473 702760993 4520 True 2521.666667 4519 96.888333 1 4995 3 chr5B.!!$R6 4994
4 TraesCS5B01G551300 chr5B 702643383 702650368 6985 True 1903.250000 2407 96.929250 19 4995 4 chr5B.!!$R4 4976
5 TraesCS5B01G551300 chr5B 702795031 702802281 7250 True 1894.500000 2442 96.707250 3 4990 4 chr5B.!!$R7 4987
6 TraesCS5B01G551300 chr4A 629120645 629121712 1067 False 887.000000 887 82.026000 3173 4247 1 chr4A.!!$F2 1074
7 TraesCS5B01G551300 chrUn 351726217 351727280 1063 False 839.000000 839 81.296000 3173 4247 1 chrUn.!!$F2 1074
8 TraesCS5B01G551300 chrUn 110463034 110465651 2617 False 567.500000 782 84.535000 1353 4038 2 chrUn.!!$F3 2685
9 TraesCS5B01G551300 chrUn 351702980 351704780 1800 False 460.000000 833 85.194000 2240 4247 3 chrUn.!!$F5 2007
10 TraesCS5B01G551300 chrUn 224672281 224675258 2977 False 430.500000 833 85.410750 964 4247 4 chrUn.!!$F4 3283
11 TraesCS5B01G551300 chrUn 471904144 471904712 568 True 392.000000 392 79.723000 3693 4250 1 chrUn.!!$R1 557
12 TraesCS5B01G551300 chrUn 340346097 340348347 2250 True 304.500000 351 86.225500 964 3522 4 chrUn.!!$R3 2558
13 TraesCS5B01G551300 chr5A 640400306 640401855 1549 False 432.000000 514 86.514000 1366 2512 2 chr5A.!!$F2 1146
14 TraesCS5B01G551300 chr4B 660491592 660492352 760 False 606.000000 606 81.320000 3229 4023 1 chr4B.!!$F1 794
15 TraesCS5B01G551300 chr2D 6207060 6207685 625 False 455.000000 455 80.374000 3419 4040 1 chr2D.!!$F1 621

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
303 305 0.322187 CCCTCGACCCACGGAAAAAT 60.322 55.000 0.0 0.0 42.82 1.82 F
973 989 0.584396 TCGACAATTCGCACACAACC 59.416 50.000 0.0 0.0 45.46 3.77 F
1770 4571 0.184692 TTCCTGCATGGTGTGGTGAA 59.815 50.000 0.0 0.0 37.07 3.18 F
2639 5996 4.597940 AGCTAAAAGTCCTGTACTCCCTTT 59.402 41.667 0.0 0.0 37.50 3.11 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1607 4379 0.690411 CCATCTCTGGGAGGAGCACT 60.690 60.000 0.00 0.0 39.04 4.40 R
3310 6878 2.931325 TGTTCACCGTTGACTTGTACAC 59.069 45.455 0.00 0.0 0.00 2.90 R
3823 7423 6.051646 GTGCAATGAAAGCAACAATCTTTT 57.948 33.333 0.00 0.0 44.64 2.27 R
4512 8152 0.031111 CCAGGAGGTCACCCATCCTA 60.031 60.000 4.27 0.0 36.69 2.94 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
73 74 1.588082 GTGGAACCCATGCTGCTTG 59.412 57.895 8.44 8.44 35.28 4.01
122 123 1.836166 TGCTAGATCTGCTTGCTCCTT 59.164 47.619 5.18 0.00 44.26 3.36
136 138 0.679505 CTCCTTCCGTTGAGACACCA 59.320 55.000 0.00 0.00 0.00 4.17
303 305 0.322187 CCCTCGACCCACGGAAAAAT 60.322 55.000 0.00 0.00 42.82 1.82
352 354 6.101296 GGAGAAGAAGGGGAAGATAATAACCA 59.899 42.308 0.00 0.00 0.00 3.67
701 711 5.527214 TGCCGATACTAATTGATCACCTTTG 59.473 40.000 0.00 0.00 0.00 2.77
702 712 5.758296 GCCGATACTAATTGATCACCTTTGA 59.242 40.000 0.00 0.00 35.73 2.69
703 713 6.292919 GCCGATACTAATTGATCACCTTTGAC 60.293 42.308 0.00 0.00 33.38 3.18
704 714 6.202954 CCGATACTAATTGATCACCTTTGACC 59.797 42.308 0.00 0.00 33.38 4.02
705 715 6.986817 CGATACTAATTGATCACCTTTGACCT 59.013 38.462 0.00 0.00 33.38 3.85
706 716 7.495934 CGATACTAATTGATCACCTTTGACCTT 59.504 37.037 0.00 0.00 33.38 3.50
707 717 9.178758 GATACTAATTGATCACCTTTGACCTTT 57.821 33.333 0.00 0.00 33.38 3.11
759 769 6.375455 GTGATTTGGCTATCCCTAACATATGG 59.625 42.308 7.80 0.00 31.11 2.74
973 989 0.584396 TCGACAATTCGCACACAACC 59.416 50.000 0.00 0.00 45.46 3.77
1607 4379 2.355108 CGGCCTCCAGAATCTCAAAGAA 60.355 50.000 0.00 0.00 0.00 2.52
1770 4571 0.184692 TTCCTGCATGGTGTGGTGAA 59.815 50.000 0.00 0.00 37.07 3.18
1784 4595 4.700213 GTGTGGTGAAGGTATACAAATGCT 59.300 41.667 5.01 0.00 0.00 3.79
1785 4596 5.878116 GTGTGGTGAAGGTATACAAATGCTA 59.122 40.000 5.01 0.00 0.00 3.49
2639 5996 4.597940 AGCTAAAAGTCCTGTACTCCCTTT 59.402 41.667 0.00 0.00 37.50 3.11
3310 6878 6.760298 GGAGTATTTAGGAAAACTCTTACGGG 59.240 42.308 0.00 0.00 38.69 5.28
4081 7706 0.107508 CATGACGATGGCTTGAGGGT 60.108 55.000 0.00 0.00 0.00 4.34
4245 7885 7.424227 AAAAATGGCTGTTTGTATCACAATG 57.576 32.000 0.00 0.00 38.00 2.82
4246 7886 5.981088 AATGGCTGTTTGTATCACAATGA 57.019 34.783 0.00 0.00 38.00 2.57
4247 7887 6.534475 AATGGCTGTTTGTATCACAATGAT 57.466 33.333 0.00 0.00 38.00 2.45
4248 7888 7.643569 AATGGCTGTTTGTATCACAATGATA 57.356 32.000 0.00 0.00 38.00 2.15
4249 7889 7.643569 ATGGCTGTTTGTATCACAATGATAA 57.356 32.000 0.15 0.00 40.64 1.75
4250 7890 6.851609 TGGCTGTTTGTATCACAATGATAAC 58.148 36.000 0.15 0.00 40.64 1.89
4251 7891 6.658816 TGGCTGTTTGTATCACAATGATAACT 59.341 34.615 0.15 0.00 40.64 2.24
4252 7892 7.148255 TGGCTGTTTGTATCACAATGATAACTC 60.148 37.037 0.15 0.00 40.64 3.01
4253 7893 7.189512 GCTGTTTGTATCACAATGATAACTCC 58.810 38.462 0.15 0.00 40.64 3.85
4254 7894 7.302350 TGTTTGTATCACAATGATAACTCCG 57.698 36.000 0.15 0.00 40.64 4.63
4255 7895 5.984233 TTGTATCACAATGATAACTCCGC 57.016 39.130 0.15 0.00 40.64 5.54
4256 7896 4.377021 TGTATCACAATGATAACTCCGCC 58.623 43.478 0.15 0.00 40.64 6.13
4257 7897 3.845781 ATCACAATGATAACTCCGCCT 57.154 42.857 0.00 0.00 34.88 5.52
4258 7898 4.955811 ATCACAATGATAACTCCGCCTA 57.044 40.909 0.00 0.00 34.88 3.93
4259 7899 4.955811 TCACAATGATAACTCCGCCTAT 57.044 40.909 0.00 0.00 0.00 2.57
4260 7900 4.631131 TCACAATGATAACTCCGCCTATG 58.369 43.478 0.00 0.00 0.00 2.23
4261 7901 4.100963 TCACAATGATAACTCCGCCTATGT 59.899 41.667 0.00 0.00 0.00 2.29
4262 7902 4.449068 CACAATGATAACTCCGCCTATGTC 59.551 45.833 0.00 0.00 0.00 3.06
4263 7903 4.345257 ACAATGATAACTCCGCCTATGTCT 59.655 41.667 0.00 0.00 0.00 3.41
4264 7904 5.163301 ACAATGATAACTCCGCCTATGTCTT 60.163 40.000 0.00 0.00 0.00 3.01
4265 7905 4.585955 TGATAACTCCGCCTATGTCTTC 57.414 45.455 0.00 0.00 0.00 2.87
4266 7906 4.215908 TGATAACTCCGCCTATGTCTTCT 58.784 43.478 0.00 0.00 0.00 2.85
4267 7907 5.382616 TGATAACTCCGCCTATGTCTTCTA 58.617 41.667 0.00 0.00 0.00 2.10
4268 7908 5.473846 TGATAACTCCGCCTATGTCTTCTAG 59.526 44.000 0.00 0.00 0.00 2.43
4269 7909 2.588620 ACTCCGCCTATGTCTTCTAGG 58.411 52.381 0.00 0.00 39.06 3.02
4285 7925 2.203209 GGCATAGCCGGTCCCAAG 60.203 66.667 1.90 0.00 39.62 3.61
4286 7926 2.902343 GCATAGCCGGTCCCAAGC 60.902 66.667 1.90 0.00 0.00 4.01
4287 7927 2.203209 CATAGCCGGTCCCAAGCC 60.203 66.667 1.90 0.00 0.00 4.35
4288 7928 3.489513 ATAGCCGGTCCCAAGCCC 61.490 66.667 1.90 0.00 0.00 5.19
4297 7937 2.044352 CCCAAGCCCGGGTAAAGG 60.044 66.667 24.63 18.41 41.83 3.11
4298 7938 2.608550 CCCAAGCCCGGGTAAAGGA 61.609 63.158 24.63 0.00 41.83 3.36
4299 7939 1.077716 CCAAGCCCGGGTAAAGGAG 60.078 63.158 24.63 5.31 0.00 3.69
4300 7940 1.077716 CAAGCCCGGGTAAAGGAGG 60.078 63.158 24.63 0.00 0.00 4.30
4301 7941 1.229723 AAGCCCGGGTAAAGGAGGA 60.230 57.895 24.63 0.00 0.00 3.71
4302 7942 1.272554 AAGCCCGGGTAAAGGAGGAG 61.273 60.000 24.63 0.00 0.00 3.69
4303 7943 2.743179 GCCCGGGTAAAGGAGGAGG 61.743 68.421 24.63 0.00 0.00 4.30
4304 7944 2.070650 CCCGGGTAAAGGAGGAGGG 61.071 68.421 14.18 0.00 0.00 4.30
4305 7945 1.306739 CCGGGTAAAGGAGGAGGGT 60.307 63.158 0.00 0.00 0.00 4.34
4306 7946 0.912968 CCGGGTAAAGGAGGAGGGTT 60.913 60.000 0.00 0.00 0.00 4.11
4307 7947 0.252197 CGGGTAAAGGAGGAGGGTTG 59.748 60.000 0.00 0.00 0.00 3.77
4308 7948 1.369403 GGGTAAAGGAGGAGGGTTGT 58.631 55.000 0.00 0.00 0.00 3.32
4309 7949 1.004394 GGGTAAAGGAGGAGGGTTGTG 59.996 57.143 0.00 0.00 0.00 3.33
4310 7950 1.982958 GGTAAAGGAGGAGGGTTGTGA 59.017 52.381 0.00 0.00 0.00 3.58
4311 7951 2.576648 GGTAAAGGAGGAGGGTTGTGAT 59.423 50.000 0.00 0.00 0.00 3.06
4312 7952 3.778629 GGTAAAGGAGGAGGGTTGTGATA 59.221 47.826 0.00 0.00 0.00 2.15
4313 7953 4.141688 GGTAAAGGAGGAGGGTTGTGATAG 60.142 50.000 0.00 0.00 0.00 2.08
4314 7954 2.182516 AGGAGGAGGGTTGTGATAGG 57.817 55.000 0.00 0.00 0.00 2.57
4315 7955 0.470341 GGAGGAGGGTTGTGATAGGC 59.530 60.000 0.00 0.00 0.00 3.93
4316 7956 1.501582 GAGGAGGGTTGTGATAGGCT 58.498 55.000 0.00 0.00 0.00 4.58
4317 7957 1.840635 GAGGAGGGTTGTGATAGGCTT 59.159 52.381 0.00 0.00 0.00 4.35
4318 7958 1.561542 AGGAGGGTTGTGATAGGCTTG 59.438 52.381 0.00 0.00 0.00 4.01
4319 7959 1.408822 GGAGGGTTGTGATAGGCTTGG 60.409 57.143 0.00 0.00 0.00 3.61
4320 7960 0.034089 AGGGTTGTGATAGGCTTGGC 60.034 55.000 0.00 0.00 0.00 4.52
4321 7961 1.376609 GGGTTGTGATAGGCTTGGCG 61.377 60.000 0.00 0.00 0.00 5.69
4322 7962 0.392461 GGTTGTGATAGGCTTGGCGA 60.392 55.000 0.00 0.00 0.00 5.54
4323 7963 1.009829 GTTGTGATAGGCTTGGCGAG 58.990 55.000 0.00 0.00 0.00 5.03
4334 7974 4.458666 TGGCGAGCCAACGTAAAA 57.541 50.000 15.24 0.00 44.12 1.52
4335 7975 2.704108 TGGCGAGCCAACGTAAAAA 58.296 47.368 15.24 0.00 44.12 1.94
4336 7976 0.308376 TGGCGAGCCAACGTAAAAAC 59.692 50.000 15.24 0.00 44.12 2.43
4337 7977 0.589708 GGCGAGCCAACGTAAAAACT 59.410 50.000 9.58 0.00 35.81 2.66
4338 7978 1.799994 GGCGAGCCAACGTAAAAACTA 59.200 47.619 9.58 0.00 35.81 2.24
4339 7979 2.159747 GGCGAGCCAACGTAAAAACTAG 60.160 50.000 9.58 0.00 35.81 2.57
4340 7980 2.723923 GCGAGCCAACGTAAAAACTAGC 60.724 50.000 0.00 0.00 35.59 3.42
4341 7981 2.159747 CGAGCCAACGTAAAAACTAGCC 60.160 50.000 0.00 0.00 0.00 3.93
4342 7982 2.809696 GAGCCAACGTAAAAACTAGCCA 59.190 45.455 0.00 0.00 0.00 4.75
4343 7983 2.812011 AGCCAACGTAAAAACTAGCCAG 59.188 45.455 0.00 0.00 0.00 4.85
4344 7984 2.551032 GCCAACGTAAAAACTAGCCAGT 59.449 45.455 0.00 0.00 36.19 4.00
4345 7985 3.364664 GCCAACGTAAAAACTAGCCAGTC 60.365 47.826 0.00 0.00 32.29 3.51
4346 7986 3.187842 CCAACGTAAAAACTAGCCAGTCC 59.812 47.826 0.00 0.00 32.29 3.85
4347 7987 3.049708 ACGTAAAAACTAGCCAGTCCC 57.950 47.619 0.00 0.00 32.29 4.46
4348 7988 2.369532 ACGTAAAAACTAGCCAGTCCCA 59.630 45.455 0.00 0.00 32.29 4.37
4349 7989 3.008704 ACGTAAAAACTAGCCAGTCCCAT 59.991 43.478 0.00 0.00 32.29 4.00
4350 7990 4.223477 ACGTAAAAACTAGCCAGTCCCATA 59.777 41.667 0.00 0.00 32.29 2.74
4351 7991 4.809426 CGTAAAAACTAGCCAGTCCCATAG 59.191 45.833 0.00 0.00 32.29 2.23
4352 7992 3.933861 AAAACTAGCCAGTCCCATAGG 57.066 47.619 0.00 0.00 32.29 2.57
4353 7993 2.570386 AACTAGCCAGTCCCATAGGT 57.430 50.000 0.00 0.00 32.29 3.08
4354 7994 1.794714 ACTAGCCAGTCCCATAGGTG 58.205 55.000 0.00 0.00 0.00 4.00
4355 7995 1.008449 ACTAGCCAGTCCCATAGGTGT 59.992 52.381 0.00 0.00 0.00 4.16
4356 7996 1.414181 CTAGCCAGTCCCATAGGTGTG 59.586 57.143 0.00 0.00 0.00 3.82
4357 7997 0.252696 AGCCAGTCCCATAGGTGTGA 60.253 55.000 0.00 0.00 0.00 3.58
4358 7998 0.618458 GCCAGTCCCATAGGTGTGAA 59.382 55.000 0.00 0.00 0.00 3.18
4359 7999 1.004277 GCCAGTCCCATAGGTGTGAAA 59.996 52.381 0.00 0.00 0.00 2.69
4360 8000 2.711542 CCAGTCCCATAGGTGTGAAAC 58.288 52.381 0.00 0.00 37.35 2.78
4370 8010 2.438868 GGTGTGAAACCCATTTGAGC 57.561 50.000 0.00 0.00 44.02 4.26
4371 8011 1.335872 GGTGTGAAACCCATTTGAGCG 60.336 52.381 0.00 0.00 44.02 5.03
4372 8012 1.606668 GTGTGAAACCCATTTGAGCGA 59.393 47.619 0.00 0.00 34.36 4.93
4373 8013 1.879380 TGTGAAACCCATTTGAGCGAG 59.121 47.619 0.00 0.00 34.36 5.03
4374 8014 2.151202 GTGAAACCCATTTGAGCGAGA 58.849 47.619 0.00 0.00 0.00 4.04
4375 8015 2.552315 GTGAAACCCATTTGAGCGAGAA 59.448 45.455 0.00 0.00 0.00 2.87
4376 8016 3.191371 GTGAAACCCATTTGAGCGAGAAT 59.809 43.478 0.00 0.00 0.00 2.40
4377 8017 4.394920 GTGAAACCCATTTGAGCGAGAATA 59.605 41.667 0.00 0.00 0.00 1.75
4378 8018 4.635765 TGAAACCCATTTGAGCGAGAATAG 59.364 41.667 0.00 0.00 0.00 1.73
4379 8019 3.914426 ACCCATTTGAGCGAGAATAGT 57.086 42.857 0.00 0.00 0.00 2.12
4380 8020 5.353394 AACCCATTTGAGCGAGAATAGTA 57.647 39.130 0.00 0.00 0.00 1.82
4381 8021 4.694339 ACCCATTTGAGCGAGAATAGTAC 58.306 43.478 0.00 0.00 0.00 2.73
4382 8022 4.406003 ACCCATTTGAGCGAGAATAGTACT 59.594 41.667 0.00 0.00 0.00 2.73
4383 8023 5.597182 ACCCATTTGAGCGAGAATAGTACTA 59.403 40.000 4.77 4.77 0.00 1.82
4384 8024 6.153067 CCCATTTGAGCGAGAATAGTACTAG 58.847 44.000 8.85 0.00 0.00 2.57
4385 8025 6.153067 CCATTTGAGCGAGAATAGTACTAGG 58.847 44.000 8.85 0.00 0.00 3.02
4386 8026 6.016192 CCATTTGAGCGAGAATAGTACTAGGA 60.016 42.308 8.85 0.00 0.00 2.94
4387 8027 7.309499 CCATTTGAGCGAGAATAGTACTAGGAT 60.309 40.741 8.85 0.00 0.00 3.24
4388 8028 6.561737 TTGAGCGAGAATAGTACTAGGATG 57.438 41.667 8.85 0.00 0.00 3.51
4389 8029 5.004448 TGAGCGAGAATAGTACTAGGATGG 58.996 45.833 8.85 0.00 0.00 3.51
4390 8030 4.337145 AGCGAGAATAGTACTAGGATGGG 58.663 47.826 8.85 0.00 0.00 4.00
4391 8031 4.080687 GCGAGAATAGTACTAGGATGGGT 58.919 47.826 8.85 0.00 0.00 4.51
4392 8032 4.082679 GCGAGAATAGTACTAGGATGGGTG 60.083 50.000 8.85 0.00 0.00 4.61
4393 8033 5.314529 CGAGAATAGTACTAGGATGGGTGA 58.685 45.833 8.85 0.00 0.00 4.02
4394 8034 5.181622 CGAGAATAGTACTAGGATGGGTGAC 59.818 48.000 8.85 0.00 0.00 3.67
4408 8048 1.487300 GGTGACCTCCTAGGAAGTCC 58.513 60.000 29.70 22.12 37.67 3.85
4410 8050 2.380941 GTGACCTCCTAGGAAGTCCTC 58.619 57.143 29.70 21.09 44.77 3.71
4411 8051 1.064611 TGACCTCCTAGGAAGTCCTCG 60.065 57.143 29.70 10.80 44.77 4.63
4412 8052 1.001282 ACCTCCTAGGAAGTCCTCGT 58.999 55.000 13.77 0.00 44.77 4.18
4413 8053 1.341187 ACCTCCTAGGAAGTCCTCGTG 60.341 57.143 13.77 0.00 44.77 4.35
4414 8054 1.064611 CCTCCTAGGAAGTCCTCGTGA 60.065 57.143 13.77 0.00 44.77 4.35
4415 8055 2.620886 CCTCCTAGGAAGTCCTCGTGAA 60.621 54.545 13.77 0.00 44.77 3.18
4416 8056 3.090037 CTCCTAGGAAGTCCTCGTGAAA 58.910 50.000 13.77 0.00 44.77 2.69
4417 8057 3.090037 TCCTAGGAAGTCCTCGTGAAAG 58.910 50.000 9.71 0.00 44.77 2.62
4418 8058 2.166664 CCTAGGAAGTCCTCGTGAAAGG 59.833 54.545 1.05 0.05 44.77 3.11
4419 8059 0.977395 AGGAAGTCCTCGTGAAAGGG 59.023 55.000 0.00 0.00 44.77 3.95
4420 8060 0.685660 GGAAGTCCTCGTGAAAGGGT 59.314 55.000 0.00 0.00 37.02 4.34
4421 8061 1.071857 GGAAGTCCTCGTGAAAGGGTT 59.928 52.381 0.00 0.00 37.02 4.11
4422 8062 2.486727 GGAAGTCCTCGTGAAAGGGTTT 60.487 50.000 0.00 0.00 37.02 3.27
4423 8063 2.545537 AGTCCTCGTGAAAGGGTTTC 57.454 50.000 0.00 0.00 40.08 2.78
4424 8064 1.766496 AGTCCTCGTGAAAGGGTTTCA 59.234 47.619 0.00 0.00 46.68 2.69
4435 8075 6.652205 TGAAAGGGTTTCATATCTAAGGGT 57.348 37.500 0.00 0.00 44.21 4.34
4436 8076 7.039722 TGAAAGGGTTTCATATCTAAGGGTT 57.960 36.000 0.00 0.00 44.21 4.11
4437 8077 6.889722 TGAAAGGGTTTCATATCTAAGGGTTG 59.110 38.462 0.00 0.00 44.21 3.77
4438 8078 6.402981 AAGGGTTTCATATCTAAGGGTTGT 57.597 37.500 0.00 0.00 0.00 3.32
4439 8079 5.755849 AGGGTTTCATATCTAAGGGTTGTG 58.244 41.667 0.00 0.00 0.00 3.33
4440 8080 5.491078 AGGGTTTCATATCTAAGGGTTGTGA 59.509 40.000 0.00 0.00 0.00 3.58
4441 8081 6.160459 AGGGTTTCATATCTAAGGGTTGTGAT 59.840 38.462 0.00 0.00 0.00 3.06
4442 8082 7.349859 AGGGTTTCATATCTAAGGGTTGTGATA 59.650 37.037 0.00 0.00 0.00 2.15
4443 8083 7.661847 GGGTTTCATATCTAAGGGTTGTGATAG 59.338 40.741 0.00 0.00 0.00 2.08
4444 8084 7.661847 GGTTTCATATCTAAGGGTTGTGATAGG 59.338 40.741 0.00 0.00 0.00 2.57
4445 8085 6.360370 TCATATCTAAGGGTTGTGATAGGC 57.640 41.667 0.00 0.00 0.00 3.93
4446 8086 6.084738 TCATATCTAAGGGTTGTGATAGGCT 58.915 40.000 0.00 0.00 0.00 4.58
4447 8087 6.558775 TCATATCTAAGGGTTGTGATAGGCTT 59.441 38.462 0.00 0.00 0.00 4.35
4448 8088 7.733047 TCATATCTAAGGGTTGTGATAGGCTTA 59.267 37.037 0.00 0.00 0.00 3.09
4449 8089 5.871396 TCTAAGGGTTGTGATAGGCTTAG 57.129 43.478 0.00 0.00 0.00 2.18
4450 8090 3.283259 AAGGGTTGTGATAGGCTTAGC 57.717 47.619 0.00 0.00 0.00 3.09
4451 8091 1.139058 AGGGTTGTGATAGGCTTAGCG 59.861 52.381 0.00 0.00 0.00 4.26
4452 8092 1.138266 GGGTTGTGATAGGCTTAGCGA 59.862 52.381 0.00 0.00 0.00 4.93
4453 8093 2.474816 GGTTGTGATAGGCTTAGCGAG 58.525 52.381 0.00 0.00 0.00 5.03
4461 8101 4.489249 GCTTAGCGAGCCAACGTA 57.511 55.556 4.01 0.00 46.01 3.57
4462 8102 2.745728 GCTTAGCGAGCCAACGTAA 58.254 52.632 4.01 0.00 46.01 3.18
4463 8103 1.073177 GCTTAGCGAGCCAACGTAAA 58.927 50.000 4.01 0.00 46.01 2.01
4464 8104 1.461897 GCTTAGCGAGCCAACGTAAAA 59.538 47.619 4.01 0.00 46.01 1.52
4465 8105 2.096119 GCTTAGCGAGCCAACGTAAAAA 60.096 45.455 4.01 0.00 46.01 1.94
4466 8106 3.476181 CTTAGCGAGCCAACGTAAAAAC 58.524 45.455 0.00 0.00 35.59 2.43
4467 8107 1.589803 AGCGAGCCAACGTAAAAACT 58.410 45.000 0.00 0.00 35.59 2.66
4468 8108 2.758009 AGCGAGCCAACGTAAAAACTA 58.242 42.857 0.00 0.00 35.59 2.24
4469 8109 2.735134 AGCGAGCCAACGTAAAAACTAG 59.265 45.455 0.00 0.00 35.59 2.57
4470 8110 2.723923 GCGAGCCAACGTAAAAACTAGC 60.724 50.000 0.00 0.00 35.59 3.42
4471 8111 2.159747 CGAGCCAACGTAAAAACTAGCC 60.160 50.000 0.00 0.00 0.00 3.93
4472 8112 2.809696 GAGCCAACGTAAAAACTAGCCA 59.190 45.455 0.00 0.00 0.00 4.75
4473 8113 2.812011 AGCCAACGTAAAAACTAGCCAG 59.188 45.455 0.00 0.00 0.00 4.85
4474 8114 2.551032 GCCAACGTAAAAACTAGCCAGT 59.449 45.455 0.00 0.00 36.19 4.00
4475 8115 3.364664 GCCAACGTAAAAACTAGCCAGTC 60.365 47.826 0.00 0.00 32.29 3.51
4476 8116 4.062991 CCAACGTAAAAACTAGCCAGTCT 58.937 43.478 0.00 0.00 32.29 3.24
4477 8117 4.514066 CCAACGTAAAAACTAGCCAGTCTT 59.486 41.667 0.00 0.00 32.29 3.01
4478 8118 5.008316 CCAACGTAAAAACTAGCCAGTCTTT 59.992 40.000 0.00 0.00 32.29 2.52
4479 8119 6.459161 CCAACGTAAAAACTAGCCAGTCTTTT 60.459 38.462 0.00 0.85 32.29 2.27
4480 8120 6.688637 ACGTAAAAACTAGCCAGTCTTTTT 57.311 33.333 9.18 5.60 32.29 1.94
4481 8121 6.492254 ACGTAAAAACTAGCCAGTCTTTTTG 58.508 36.000 5.33 4.98 32.29 2.44
4482 8122 5.912955 CGTAAAAACTAGCCAGTCTTTTTGG 59.087 40.000 5.33 0.00 38.78 3.28
4483 8123 5.932619 AAAAACTAGCCAGTCTTTTTGGT 57.067 34.783 0.00 0.00 38.02 3.67
4484 8124 7.254863 CGTAAAAACTAGCCAGTCTTTTTGGTA 60.255 37.037 5.33 0.00 38.02 3.25
4485 8125 7.597288 AAAAACTAGCCAGTCTTTTTGGTAT 57.403 32.000 0.00 0.00 38.02 2.73
4486 8126 6.575162 AAACTAGCCAGTCTTTTTGGTATG 57.425 37.500 0.00 0.00 38.02 2.39
4487 8127 5.499004 ACTAGCCAGTCTTTTTGGTATGA 57.501 39.130 0.00 0.00 38.02 2.15
4488 8128 5.876357 ACTAGCCAGTCTTTTTGGTATGAA 58.124 37.500 0.00 0.00 38.02 2.57
4489 8129 6.303839 ACTAGCCAGTCTTTTTGGTATGAAA 58.696 36.000 0.00 0.00 38.02 2.69
4490 8130 5.453567 AGCCAGTCTTTTTGGTATGAAAC 57.546 39.130 0.00 0.00 38.02 2.78
4511 8151 2.822764 CCATTTGGGCGAGAGTAGTAC 58.177 52.381 0.00 0.00 0.00 2.73
4512 8152 2.431057 CCATTTGGGCGAGAGTAGTACT 59.569 50.000 1.37 1.37 0.00 2.73
4513 8153 3.635373 CCATTTGGGCGAGAGTAGTACTA 59.365 47.826 1.88 0.00 0.00 1.82
4514 8154 4.261656 CCATTTGGGCGAGAGTAGTACTAG 60.262 50.000 1.87 0.00 0.00 2.57
4515 8155 2.634815 TGGGCGAGAGTAGTACTAGG 57.365 55.000 1.87 0.00 0.00 3.02
4516 8156 2.121948 TGGGCGAGAGTAGTACTAGGA 58.878 52.381 1.87 0.00 0.00 2.94
4517 8157 2.709934 TGGGCGAGAGTAGTACTAGGAT 59.290 50.000 1.87 0.00 0.00 3.24
4518 8158 3.075884 GGGCGAGAGTAGTACTAGGATG 58.924 54.545 1.87 0.00 0.00 3.51
4519 8159 3.075884 GGCGAGAGTAGTACTAGGATGG 58.924 54.545 1.87 0.00 0.00 3.51
4520 8160 3.075884 GCGAGAGTAGTACTAGGATGGG 58.924 54.545 1.87 0.00 0.00 4.00
4521 8161 3.496515 GCGAGAGTAGTACTAGGATGGGT 60.497 52.174 1.87 0.00 0.00 4.51
4522 8162 4.066490 CGAGAGTAGTACTAGGATGGGTG 58.934 52.174 1.87 0.00 0.00 4.61
4523 8163 4.202336 CGAGAGTAGTACTAGGATGGGTGA 60.202 50.000 1.87 0.00 0.00 4.02
4524 8164 5.051409 AGAGTAGTACTAGGATGGGTGAC 57.949 47.826 1.87 0.00 0.00 3.67
4536 8176 4.234673 GGTGACCTCCTGGGAAGT 57.765 61.111 0.00 0.00 38.76 3.01
4537 8177 1.984020 GGTGACCTCCTGGGAAGTC 59.016 63.158 10.52 10.52 36.44 3.01
4538 8178 1.554583 GGTGACCTCCTGGGAAGTCC 61.555 65.000 13.79 6.97 35.38 3.85
4539 8179 0.545548 GTGACCTCCTGGGAAGTCCT 60.546 60.000 13.79 0.00 35.38 3.85
4540 8180 0.193574 TGACCTCCTGGGAAGTCCTT 59.806 55.000 13.79 0.00 35.38 3.36
4541 8181 0.615850 GACCTCCTGGGAAGTCCTTG 59.384 60.000 7.04 0.00 38.76 3.61
4542 8182 0.104409 ACCTCCTGGGAAGTCCTTGT 60.104 55.000 0.00 0.00 38.76 3.16
4543 8183 0.326264 CCTCCTGGGAAGTCCTTGTG 59.674 60.000 0.00 0.00 37.23 3.33
4544 8184 1.352083 CTCCTGGGAAGTCCTTGTGA 58.648 55.000 0.00 0.00 36.20 3.58
4545 8185 1.699634 CTCCTGGGAAGTCCTTGTGAA 59.300 52.381 0.00 0.00 36.20 3.18
4546 8186 2.106511 CTCCTGGGAAGTCCTTGTGAAA 59.893 50.000 0.00 0.00 36.20 2.69
4547 8187 2.106511 TCCTGGGAAGTCCTTGTGAAAG 59.893 50.000 0.00 0.00 36.20 2.62
4548 8188 2.508526 CTGGGAAGTCCTTGTGAAAGG 58.491 52.381 0.00 0.00 41.35 3.11
4549 8189 1.144913 TGGGAAGTCCTTGTGAAAGGG 59.855 52.381 4.73 0.00 40.38 3.95
4550 8190 1.145119 GGGAAGTCCTTGTGAAAGGGT 59.855 52.381 4.73 0.00 40.38 4.34
4551 8191 2.424379 GGGAAGTCCTTGTGAAAGGGTT 60.424 50.000 4.73 0.00 40.38 4.11
4552 8192 3.296854 GGAAGTCCTTGTGAAAGGGTTT 58.703 45.455 4.73 0.44 40.38 3.27
4553 8193 3.318275 GGAAGTCCTTGTGAAAGGGTTTC 59.682 47.826 4.73 8.41 40.38 2.78
4554 8194 3.662759 AGTCCTTGTGAAAGGGTTTCA 57.337 42.857 4.73 0.00 46.68 2.69
4564 8204 5.975988 TGAAAGGGTTTCATATCTAGCCT 57.024 39.130 0.00 0.00 44.21 4.58
4566 8206 6.827727 TGAAAGGGTTTCATATCTAGCCTAC 58.172 40.000 0.00 0.00 44.21 3.18
4567 8207 5.827326 AAGGGTTTCATATCTAGCCTACC 57.173 43.478 0.00 0.00 38.75 3.18
4568 8208 4.168883 AGGGTTTCATATCTAGCCTACCC 58.831 47.826 0.00 0.00 43.42 3.69
4569 8209 3.263681 GGGTTTCATATCTAGCCTACCCC 59.736 52.174 0.00 0.00 38.39 4.95
4570 8210 3.908103 GGTTTCATATCTAGCCTACCCCA 59.092 47.826 0.00 0.00 0.00 4.96
4571 8211 4.349930 GGTTTCATATCTAGCCTACCCCAA 59.650 45.833 0.00 0.00 0.00 4.12
4572 8212 5.306394 GTTTCATATCTAGCCTACCCCAAC 58.694 45.833 0.00 0.00 0.00 3.77
4573 8213 4.487282 TCATATCTAGCCTACCCCAACT 57.513 45.455 0.00 0.00 0.00 3.16
4574 8214 4.827789 TCATATCTAGCCTACCCCAACTT 58.172 43.478 0.00 0.00 0.00 2.66
4575 8215 4.593206 TCATATCTAGCCTACCCCAACTTG 59.407 45.833 0.00 0.00 0.00 3.16
4576 8216 2.337359 TCTAGCCTACCCCAACTTGT 57.663 50.000 0.00 0.00 0.00 3.16
4577 8217 2.627933 TCTAGCCTACCCCAACTTGTT 58.372 47.619 0.00 0.00 0.00 2.83
4578 8218 2.983898 TCTAGCCTACCCCAACTTGTTT 59.016 45.455 0.00 0.00 0.00 2.83
4579 8219 1.995376 AGCCTACCCCAACTTGTTTG 58.005 50.000 0.00 0.00 34.63 2.93
4593 8233 7.477144 CAACTTGTTTGGGATAAAAGGTTTC 57.523 36.000 0.00 0.00 0.00 2.78
4594 8234 5.838529 ACTTGTTTGGGATAAAAGGTTTCG 58.161 37.500 0.00 0.00 0.00 3.46
4595 8235 5.361571 ACTTGTTTGGGATAAAAGGTTTCGT 59.638 36.000 0.00 0.00 0.00 3.85
4596 8236 5.189659 TGTTTGGGATAAAAGGTTTCGTG 57.810 39.130 0.00 0.00 0.00 4.35
4597 8237 4.888239 TGTTTGGGATAAAAGGTTTCGTGA 59.112 37.500 0.00 0.00 0.00 4.35
4598 8238 5.536916 TGTTTGGGATAAAAGGTTTCGTGAT 59.463 36.000 0.00 0.00 0.00 3.06
4599 8239 6.715718 TGTTTGGGATAAAAGGTTTCGTGATA 59.284 34.615 0.00 0.00 0.00 2.15
4600 8240 6.995511 TTGGGATAAAAGGTTTCGTGATAG 57.004 37.500 0.00 0.00 0.00 2.08
4601 8241 6.057321 TGGGATAAAAGGTTTCGTGATAGT 57.943 37.500 0.00 0.00 0.00 2.12
4602 8242 5.878116 TGGGATAAAAGGTTTCGTGATAGTG 59.122 40.000 0.00 0.00 0.00 2.74
4603 8243 6.110707 GGGATAAAAGGTTTCGTGATAGTGA 58.889 40.000 0.00 0.00 0.00 3.41
4604 8244 6.766467 GGGATAAAAGGTTTCGTGATAGTGAT 59.234 38.462 0.00 0.00 0.00 3.06
4605 8245 7.929785 GGGATAAAAGGTTTCGTGATAGTGATA 59.070 37.037 0.00 0.00 0.00 2.15
4606 8246 8.979574 GGATAAAAGGTTTCGTGATAGTGATAG 58.020 37.037 0.00 0.00 0.00 2.08
4958 8598 9.509855 GTTTTCACTTGTGTACATTTGTATTCA 57.490 29.630 0.00 0.00 32.54 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
73 74 3.314635 AGTGTCGTACCATCTATTCCGAC 59.685 47.826 0.00 0.00 43.49 4.79
122 123 0.396435 AGCAATGGTGTCTCAACGGA 59.604 50.000 0.00 0.00 0.00 4.69
136 138 2.751166 AGACACAGTTAGCGAGCAAT 57.249 45.000 0.00 0.00 0.00 3.56
303 305 2.143122 GACGAACATGAGGCAAAGTCA 58.857 47.619 0.00 0.00 0.00 3.41
352 354 9.454859 CTTCTACAGAAAATTTTCACTCCCTAT 57.545 33.333 28.00 6.48 39.61 2.57
956 969 2.116366 GTTGGTTGTGTGCGAATTGTC 58.884 47.619 0.00 0.00 0.00 3.18
973 989 3.721087 AGGAAATGAGGGGTGTAGTTG 57.279 47.619 0.00 0.00 0.00 3.16
1559 4331 1.141019 GAAGGCGCATCTACGGACA 59.859 57.895 10.83 0.00 0.00 4.02
1607 4379 0.690411 CCATCTCTGGGAGGAGCACT 60.690 60.000 0.00 0.00 39.04 4.40
3310 6878 2.931325 TGTTCACCGTTGACTTGTACAC 59.069 45.455 0.00 0.00 0.00 2.90
3823 7423 6.051646 GTGCAATGAAAGCAACAATCTTTT 57.948 33.333 0.00 0.00 44.64 2.27
4081 7706 6.460953 GCAACATCTTTAAGAAGGGAAACACA 60.461 38.462 0.00 0.00 33.56 3.72
4234 7874 4.100963 AGGCGGAGTTATCATTGTGATACA 59.899 41.667 0.00 0.00 38.92 2.29
4235 7875 4.632153 AGGCGGAGTTATCATTGTGATAC 58.368 43.478 0.00 0.00 38.92 2.24
4236 7876 4.955811 AGGCGGAGTTATCATTGTGATA 57.044 40.909 0.00 0.00 38.26 2.15
4237 7877 3.845781 AGGCGGAGTTATCATTGTGAT 57.154 42.857 0.00 0.00 40.72 3.06
4238 7878 4.100963 ACATAGGCGGAGTTATCATTGTGA 59.899 41.667 0.00 0.00 0.00 3.58
4239 7879 4.380531 ACATAGGCGGAGTTATCATTGTG 58.619 43.478 0.00 0.00 0.00 3.33
4240 7880 4.345257 AGACATAGGCGGAGTTATCATTGT 59.655 41.667 0.00 0.00 0.00 2.71
4241 7881 4.887748 AGACATAGGCGGAGTTATCATTG 58.112 43.478 0.00 0.00 0.00 2.82
4242 7882 5.305644 AGAAGACATAGGCGGAGTTATCATT 59.694 40.000 0.00 0.00 0.00 2.57
4243 7883 4.835615 AGAAGACATAGGCGGAGTTATCAT 59.164 41.667 0.00 0.00 0.00 2.45
4244 7884 4.215908 AGAAGACATAGGCGGAGTTATCA 58.784 43.478 0.00 0.00 0.00 2.15
4245 7885 4.857509 AGAAGACATAGGCGGAGTTATC 57.142 45.455 0.00 0.00 0.00 1.75
4246 7886 4.767928 CCTAGAAGACATAGGCGGAGTTAT 59.232 45.833 0.00 0.00 33.76 1.89
4247 7887 4.142790 CCTAGAAGACATAGGCGGAGTTA 58.857 47.826 0.00 0.00 33.76 2.24
4248 7888 2.959707 CCTAGAAGACATAGGCGGAGTT 59.040 50.000 0.00 0.00 33.76 3.01
4249 7889 2.588620 CCTAGAAGACATAGGCGGAGT 58.411 52.381 0.00 0.00 33.76 3.85
4255 7895 4.464069 GGCTATGCCTAGAAGACATAGG 57.536 50.000 16.76 0.00 46.69 2.57
4268 7908 2.203209 CTTGGGACCGGCTATGCC 60.203 66.667 0.00 0.00 46.75 4.40
4269 7909 2.902343 GCTTGGGACCGGCTATGC 60.902 66.667 0.00 0.00 0.00 3.14
4270 7910 2.203209 GGCTTGGGACCGGCTATG 60.203 66.667 0.00 0.00 0.00 2.23
4271 7911 3.489513 GGGCTTGGGACCGGCTAT 61.490 66.667 0.00 0.00 0.00 2.97
4281 7921 1.077716 CTCCTTTACCCGGGCTTGG 60.078 63.158 24.08 17.99 0.00 3.61
4282 7922 1.077716 CCTCCTTTACCCGGGCTTG 60.078 63.158 24.08 8.51 0.00 4.01
4283 7923 1.229723 TCCTCCTTTACCCGGGCTT 60.230 57.895 24.08 4.08 0.00 4.35
4284 7924 1.689582 CTCCTCCTTTACCCGGGCT 60.690 63.158 24.08 10.93 0.00 5.19
4285 7925 2.743179 CCTCCTCCTTTACCCGGGC 61.743 68.421 24.08 0.00 0.00 6.13
4286 7926 2.070650 CCCTCCTCCTTTACCCGGG 61.071 68.421 22.25 22.25 0.00 5.73
4287 7927 0.912968 AACCCTCCTCCTTTACCCGG 60.913 60.000 0.00 0.00 0.00 5.73
4288 7928 0.252197 CAACCCTCCTCCTTTACCCG 59.748 60.000 0.00 0.00 0.00 5.28
4289 7929 1.004394 CACAACCCTCCTCCTTTACCC 59.996 57.143 0.00 0.00 0.00 3.69
4290 7930 1.982958 TCACAACCCTCCTCCTTTACC 59.017 52.381 0.00 0.00 0.00 2.85
4291 7931 4.141688 CCTATCACAACCCTCCTCCTTTAC 60.142 50.000 0.00 0.00 0.00 2.01
4292 7932 4.037927 CCTATCACAACCCTCCTCCTTTA 58.962 47.826 0.00 0.00 0.00 1.85
4293 7933 2.846827 CCTATCACAACCCTCCTCCTTT 59.153 50.000 0.00 0.00 0.00 3.11
4294 7934 2.482494 CCTATCACAACCCTCCTCCTT 58.518 52.381 0.00 0.00 0.00 3.36
4295 7935 1.972207 GCCTATCACAACCCTCCTCCT 60.972 57.143 0.00 0.00 0.00 3.69
4296 7936 0.470341 GCCTATCACAACCCTCCTCC 59.530 60.000 0.00 0.00 0.00 4.30
4297 7937 1.501582 AGCCTATCACAACCCTCCTC 58.498 55.000 0.00 0.00 0.00 3.71
4298 7938 1.561542 CAAGCCTATCACAACCCTCCT 59.438 52.381 0.00 0.00 0.00 3.69
4299 7939 1.408822 CCAAGCCTATCACAACCCTCC 60.409 57.143 0.00 0.00 0.00 4.30
4300 7940 2.019156 GCCAAGCCTATCACAACCCTC 61.019 57.143 0.00 0.00 0.00 4.30
4301 7941 0.034089 GCCAAGCCTATCACAACCCT 60.034 55.000 0.00 0.00 0.00 4.34
4302 7942 1.376609 CGCCAAGCCTATCACAACCC 61.377 60.000 0.00 0.00 0.00 4.11
4303 7943 0.392461 TCGCCAAGCCTATCACAACC 60.392 55.000 0.00 0.00 0.00 3.77
4304 7944 1.009829 CTCGCCAAGCCTATCACAAC 58.990 55.000 0.00 0.00 0.00 3.32
4305 7945 0.744414 GCTCGCCAAGCCTATCACAA 60.744 55.000 0.00 0.00 45.92 3.33
4306 7946 1.153369 GCTCGCCAAGCCTATCACA 60.153 57.895 0.00 0.00 45.92 3.58
4307 7947 3.724494 GCTCGCCAAGCCTATCAC 58.276 61.111 0.00 0.00 45.92 3.06
4317 7957 0.308376 GTTTTTACGTTGGCTCGCCA 59.692 50.000 6.52 6.52 45.63 5.69
4318 7958 0.589708 AGTTTTTACGTTGGCTCGCC 59.410 50.000 0.00 0.00 0.00 5.54
4319 7959 2.723923 GCTAGTTTTTACGTTGGCTCGC 60.724 50.000 0.00 0.00 0.00 5.03
4320 7960 2.159747 GGCTAGTTTTTACGTTGGCTCG 60.160 50.000 0.00 1.70 0.00 5.03
4321 7961 2.809696 TGGCTAGTTTTTACGTTGGCTC 59.190 45.455 0.00 0.00 0.00 4.70
4322 7962 2.812011 CTGGCTAGTTTTTACGTTGGCT 59.188 45.455 0.00 0.00 0.00 4.75
4323 7963 2.551032 ACTGGCTAGTTTTTACGTTGGC 59.449 45.455 0.00 0.00 31.66 4.52
4324 7964 3.187842 GGACTGGCTAGTTTTTACGTTGG 59.812 47.826 3.47 0.00 37.25 3.77
4325 7965 3.187842 GGGACTGGCTAGTTTTTACGTTG 59.812 47.826 3.47 0.00 37.25 4.10
4326 7966 3.181452 TGGGACTGGCTAGTTTTTACGTT 60.181 43.478 3.47 0.00 37.25 3.99
4327 7967 2.369532 TGGGACTGGCTAGTTTTTACGT 59.630 45.455 3.47 0.00 37.25 3.57
4328 7968 3.048337 TGGGACTGGCTAGTTTTTACG 57.952 47.619 3.47 0.00 37.25 3.18
4329 7969 5.123936 CCTATGGGACTGGCTAGTTTTTAC 58.876 45.833 3.47 0.00 37.25 2.01
4330 7970 4.786454 ACCTATGGGACTGGCTAGTTTTTA 59.214 41.667 3.47 0.00 37.25 1.52
4331 7971 3.591977 ACCTATGGGACTGGCTAGTTTTT 59.408 43.478 3.47 0.00 37.25 1.94
4332 7972 3.054361 CACCTATGGGACTGGCTAGTTTT 60.054 47.826 3.47 0.00 37.25 2.43
4333 7973 2.505819 CACCTATGGGACTGGCTAGTTT 59.494 50.000 3.47 0.00 37.25 2.66
4334 7974 2.119495 CACCTATGGGACTGGCTAGTT 58.881 52.381 3.47 0.00 37.25 2.24
4335 7975 1.008449 ACACCTATGGGACTGGCTAGT 59.992 52.381 0.69 0.69 40.66 2.57
4336 7976 1.414181 CACACCTATGGGACTGGCTAG 59.586 57.143 0.25 0.00 36.25 3.42
4337 7977 1.007842 TCACACCTATGGGACTGGCTA 59.992 52.381 0.25 0.00 31.41 3.93
4338 7978 0.252696 TCACACCTATGGGACTGGCT 60.253 55.000 0.25 0.00 31.41 4.75
4339 7979 0.618458 TTCACACCTATGGGACTGGC 59.382 55.000 0.25 0.00 38.25 4.85
4340 7980 2.618045 GGTTTCACACCTATGGGACTGG 60.618 54.545 0.25 0.00 38.25 4.00
4341 7981 2.618045 GGGTTTCACACCTATGGGACTG 60.618 54.545 0.25 0.00 46.38 3.51
4342 7982 1.633945 GGGTTTCACACCTATGGGACT 59.366 52.381 0.25 0.00 46.38 3.85
4343 7983 1.353022 TGGGTTTCACACCTATGGGAC 59.647 52.381 0.25 0.00 46.38 4.46
4344 7984 1.748732 TGGGTTTCACACCTATGGGA 58.251 50.000 0.25 0.00 46.38 4.37
4345 7985 2.826674 ATGGGTTTCACACCTATGGG 57.173 50.000 0.00 0.00 45.02 4.00
4346 7986 4.085733 TCAAATGGGTTTCACACCTATGG 58.914 43.478 0.00 0.00 46.02 2.74
4347 7987 4.380867 GCTCAAATGGGTTTCACACCTATG 60.381 45.833 0.00 0.00 46.02 2.23
4349 7989 3.153919 GCTCAAATGGGTTTCACACCTA 58.846 45.455 0.00 0.00 46.38 3.08
4350 7990 1.963515 GCTCAAATGGGTTTCACACCT 59.036 47.619 0.00 0.00 46.38 4.00
4351 7991 1.335872 CGCTCAAATGGGTTTCACACC 60.336 52.381 0.00 0.00 46.46 4.16
4352 7992 1.606668 TCGCTCAAATGGGTTTCACAC 59.393 47.619 0.00 0.00 0.00 3.82
4353 7993 1.879380 CTCGCTCAAATGGGTTTCACA 59.121 47.619 0.00 0.00 0.00 3.58
4354 7994 2.151202 TCTCGCTCAAATGGGTTTCAC 58.849 47.619 0.00 0.00 0.00 3.18
4355 7995 2.559698 TCTCGCTCAAATGGGTTTCA 57.440 45.000 0.00 0.00 0.00 2.69
4356 7996 4.636206 ACTATTCTCGCTCAAATGGGTTTC 59.364 41.667 0.00 0.00 0.00 2.78
4357 7997 4.589908 ACTATTCTCGCTCAAATGGGTTT 58.410 39.130 0.00 0.00 0.00 3.27
4358 7998 4.222124 ACTATTCTCGCTCAAATGGGTT 57.778 40.909 0.00 0.00 0.00 4.11
4359 7999 3.914426 ACTATTCTCGCTCAAATGGGT 57.086 42.857 0.00 0.00 0.00 4.51
4360 8000 4.950050 AGTACTATTCTCGCTCAAATGGG 58.050 43.478 0.00 0.00 0.00 4.00
4361 8001 6.016192 TCCTAGTACTATTCTCGCTCAAATGG 60.016 42.308 2.33 0.00 0.00 3.16
4362 8002 6.971602 TCCTAGTACTATTCTCGCTCAAATG 58.028 40.000 2.33 0.00 0.00 2.32
4363 8003 7.309499 CCATCCTAGTACTATTCTCGCTCAAAT 60.309 40.741 2.33 0.00 0.00 2.32
4364 8004 6.016192 CCATCCTAGTACTATTCTCGCTCAAA 60.016 42.308 2.33 0.00 0.00 2.69
4365 8005 5.473846 CCATCCTAGTACTATTCTCGCTCAA 59.526 44.000 2.33 0.00 0.00 3.02
4366 8006 5.004448 CCATCCTAGTACTATTCTCGCTCA 58.996 45.833 2.33 0.00 0.00 4.26
4367 8007 4.396790 CCCATCCTAGTACTATTCTCGCTC 59.603 50.000 2.33 0.00 0.00 5.03
4368 8008 4.202588 ACCCATCCTAGTACTATTCTCGCT 60.203 45.833 2.33 0.00 0.00 4.93
4369 8009 4.080687 ACCCATCCTAGTACTATTCTCGC 58.919 47.826 2.33 0.00 0.00 5.03
4370 8010 5.181622 GTCACCCATCCTAGTACTATTCTCG 59.818 48.000 2.33 0.00 0.00 4.04
4371 8011 5.477637 GGTCACCCATCCTAGTACTATTCTC 59.522 48.000 2.33 0.00 0.00 2.87
4372 8012 5.136392 AGGTCACCCATCCTAGTACTATTCT 59.864 44.000 2.33 0.00 31.66 2.40
4373 8013 5.395611 AGGTCACCCATCCTAGTACTATTC 58.604 45.833 2.33 0.00 31.66 1.75
4374 8014 5.395611 GAGGTCACCCATCCTAGTACTATT 58.604 45.833 2.33 0.00 33.83 1.73
4375 8015 4.202695 GGAGGTCACCCATCCTAGTACTAT 60.203 50.000 2.33 0.00 33.83 2.12
4376 8016 3.139770 GGAGGTCACCCATCCTAGTACTA 59.860 52.174 1.89 1.89 33.83 1.82
4377 8017 2.091222 GGAGGTCACCCATCCTAGTACT 60.091 54.545 0.00 0.00 33.83 2.73
4378 8018 2.091222 AGGAGGTCACCCATCCTAGTAC 60.091 54.545 2.60 0.00 36.91 2.73
4379 8019 2.224077 AGGAGGTCACCCATCCTAGTA 58.776 52.381 2.60 0.00 36.91 1.82
4380 8020 1.019650 AGGAGGTCACCCATCCTAGT 58.980 55.000 2.60 0.00 36.91 2.57
4381 8021 2.491825 CCTAGGAGGTCACCCATCCTAG 60.492 59.091 24.06 24.06 46.05 3.02
4382 8022 1.503784 CCTAGGAGGTCACCCATCCTA 59.496 57.143 10.74 10.74 38.53 2.94
4383 8023 0.266152 CCTAGGAGGTCACCCATCCT 59.734 60.000 9.58 9.58 39.90 3.24
4384 8024 0.264955 TCCTAGGAGGTCACCCATCC 59.735 60.000 7.62 0.00 36.53 3.51
4385 8025 2.043227 CTTCCTAGGAGGTCACCCATC 58.957 57.143 12.26 0.00 36.53 3.51
4386 8026 1.366435 ACTTCCTAGGAGGTCACCCAT 59.634 52.381 20.38 0.00 36.53 4.00
4387 8027 0.790993 ACTTCCTAGGAGGTCACCCA 59.209 55.000 20.38 0.00 36.53 4.51
4388 8028 1.487300 GACTTCCTAGGAGGTCACCC 58.513 60.000 36.64 18.70 46.32 4.61
4398 8038 8.945486 GAAACCCTTTCACGAGGACTTCCTAG 62.945 50.000 0.00 0.27 42.02 3.02
4399 8039 7.251005 GAAACCCTTTCACGAGGACTTCCTA 62.251 48.000 0.00 0.00 42.02 2.94
4400 8040 6.553615 GAAACCCTTTCACGAGGACTTCCT 62.554 50.000 0.00 0.00 43.41 3.36
4401 8041 0.685660 ACCCTTTCACGAGGACTTCC 59.314 55.000 0.00 0.00 39.25 3.46
4402 8042 2.545537 AACCCTTTCACGAGGACTTC 57.454 50.000 0.00 0.00 39.25 3.01
4403 8043 2.171870 TGAAACCCTTTCACGAGGACTT 59.828 45.455 0.00 0.00 44.21 3.01
4404 8044 1.766496 TGAAACCCTTTCACGAGGACT 59.234 47.619 0.00 0.00 44.21 3.85
4405 8045 2.249844 TGAAACCCTTTCACGAGGAC 57.750 50.000 0.00 0.00 44.21 3.85
4413 8053 6.890268 ACAACCCTTAGATATGAAACCCTTTC 59.110 38.462 0.00 0.00 40.08 2.62
4414 8054 6.663523 CACAACCCTTAGATATGAAACCCTTT 59.336 38.462 0.00 0.00 0.00 3.11
4415 8055 6.011981 TCACAACCCTTAGATATGAAACCCTT 60.012 38.462 0.00 0.00 0.00 3.95
4416 8056 5.491078 TCACAACCCTTAGATATGAAACCCT 59.509 40.000 0.00 0.00 0.00 4.34
4417 8057 5.751586 TCACAACCCTTAGATATGAAACCC 58.248 41.667 0.00 0.00 0.00 4.11
4418 8058 7.661847 CCTATCACAACCCTTAGATATGAAACC 59.338 40.741 0.00 0.00 0.00 3.27
4419 8059 7.173390 GCCTATCACAACCCTTAGATATGAAAC 59.827 40.741 0.00 0.00 0.00 2.78
4420 8060 7.072454 AGCCTATCACAACCCTTAGATATGAAA 59.928 37.037 0.00 0.00 0.00 2.69
4421 8061 6.558775 AGCCTATCACAACCCTTAGATATGAA 59.441 38.462 0.00 0.00 0.00 2.57
4422 8062 6.084738 AGCCTATCACAACCCTTAGATATGA 58.915 40.000 0.00 0.00 0.00 2.15
4423 8063 6.365970 AGCCTATCACAACCCTTAGATATG 57.634 41.667 0.00 0.00 0.00 1.78
4424 8064 7.310734 GCTAAGCCTATCACAACCCTTAGATAT 60.311 40.741 8.84 0.00 35.82 1.63
4425 8065 6.014499 GCTAAGCCTATCACAACCCTTAGATA 60.014 42.308 8.84 0.00 35.82 1.98
4426 8066 5.221742 GCTAAGCCTATCACAACCCTTAGAT 60.222 44.000 8.84 0.00 35.82 1.98
4427 8067 4.101119 GCTAAGCCTATCACAACCCTTAGA 59.899 45.833 8.84 0.00 35.82 2.10
4428 8068 4.381411 GCTAAGCCTATCACAACCCTTAG 58.619 47.826 0.00 0.00 36.48 2.18
4429 8069 3.181469 CGCTAAGCCTATCACAACCCTTA 60.181 47.826 0.00 0.00 0.00 2.69
4430 8070 2.420129 CGCTAAGCCTATCACAACCCTT 60.420 50.000 0.00 0.00 0.00 3.95
4431 8071 1.139058 CGCTAAGCCTATCACAACCCT 59.861 52.381 0.00 0.00 0.00 4.34
4432 8072 1.138266 TCGCTAAGCCTATCACAACCC 59.862 52.381 0.00 0.00 0.00 4.11
4433 8073 2.474816 CTCGCTAAGCCTATCACAACC 58.525 52.381 0.00 0.00 0.00 3.77
4434 8074 1.861575 GCTCGCTAAGCCTATCACAAC 59.138 52.381 0.00 0.00 45.92 3.32
4435 8075 2.225068 GCTCGCTAAGCCTATCACAA 57.775 50.000 0.00 0.00 45.92 3.33
4436 8076 3.967886 GCTCGCTAAGCCTATCACA 57.032 52.632 0.00 0.00 45.92 3.58
4445 8085 3.185797 AGTTTTTACGTTGGCTCGCTAAG 59.814 43.478 0.00 0.00 0.00 2.18
4446 8086 3.132925 AGTTTTTACGTTGGCTCGCTAA 58.867 40.909 0.00 0.00 0.00 3.09
4447 8087 2.758009 AGTTTTTACGTTGGCTCGCTA 58.242 42.857 0.00 0.00 0.00 4.26
4448 8088 1.589803 AGTTTTTACGTTGGCTCGCT 58.410 45.000 0.00 0.00 0.00 4.93
4449 8089 2.723923 GCTAGTTTTTACGTTGGCTCGC 60.724 50.000 0.00 0.00 0.00 5.03
4450 8090 2.159747 GGCTAGTTTTTACGTTGGCTCG 60.160 50.000 0.00 1.70 0.00 5.03
4451 8091 2.809696 TGGCTAGTTTTTACGTTGGCTC 59.190 45.455 0.00 0.00 0.00 4.70
4452 8092 2.812011 CTGGCTAGTTTTTACGTTGGCT 59.188 45.455 0.00 0.00 0.00 4.75
4453 8093 2.551032 ACTGGCTAGTTTTTACGTTGGC 59.449 45.455 0.00 0.00 31.66 4.52
4454 8094 4.062991 AGACTGGCTAGTTTTTACGTTGG 58.937 43.478 3.47 0.00 37.25 3.77
4455 8095 5.668558 AAGACTGGCTAGTTTTTACGTTG 57.331 39.130 3.47 0.00 37.25 4.10
4456 8096 6.688637 AAAAGACTGGCTAGTTTTTACGTT 57.311 33.333 17.28 1.45 39.50 3.99
4457 8097 6.459161 CCAAAAAGACTGGCTAGTTTTTACGT 60.459 38.462 17.28 5.46 39.50 3.57
4458 8098 5.912955 CCAAAAAGACTGGCTAGTTTTTACG 59.087 40.000 17.28 11.77 39.50 3.18
4459 8099 6.802608 ACCAAAAAGACTGGCTAGTTTTTAC 58.197 36.000 17.28 0.00 39.50 2.01
4460 8100 8.573035 CATACCAAAAAGACTGGCTAGTTTTTA 58.427 33.333 17.28 4.06 39.50 1.52
4461 8101 5.932619 ACCAAAAAGACTGGCTAGTTTTT 57.067 34.783 12.22 12.22 41.44 1.94
4462 8102 6.775629 TCATACCAAAAAGACTGGCTAGTTTT 59.224 34.615 3.47 1.40 37.25 2.43
4463 8103 6.303839 TCATACCAAAAAGACTGGCTAGTTT 58.696 36.000 3.47 0.00 37.25 2.66
4464 8104 5.876357 TCATACCAAAAAGACTGGCTAGTT 58.124 37.500 3.47 0.00 37.25 2.24
4465 8105 5.499004 TCATACCAAAAAGACTGGCTAGT 57.501 39.130 0.69 0.69 40.66 2.57
4466 8106 6.349363 GGTTTCATACCAAAAAGACTGGCTAG 60.349 42.308 0.00 0.00 46.92 3.42
4467 8107 5.475564 GGTTTCATACCAAAAAGACTGGCTA 59.524 40.000 0.00 0.00 46.92 3.93
4468 8108 4.280929 GGTTTCATACCAAAAAGACTGGCT 59.719 41.667 0.00 0.00 46.92 4.75
4469 8109 4.556233 GGTTTCATACCAAAAAGACTGGC 58.444 43.478 0.00 0.00 46.92 4.85
4491 8131 2.431057 AGTACTACTCTCGCCCAAATGG 59.569 50.000 0.00 0.00 37.09 3.16
4492 8132 3.802948 AGTACTACTCTCGCCCAAATG 57.197 47.619 0.00 0.00 0.00 2.32
4493 8133 3.890147 CCTAGTACTACTCTCGCCCAAAT 59.110 47.826 0.00 0.00 0.00 2.32
4494 8134 3.054139 TCCTAGTACTACTCTCGCCCAAA 60.054 47.826 0.00 0.00 0.00 3.28
4495 8135 2.507058 TCCTAGTACTACTCTCGCCCAA 59.493 50.000 0.00 0.00 0.00 4.12
4496 8136 2.121948 TCCTAGTACTACTCTCGCCCA 58.878 52.381 0.00 0.00 0.00 5.36
4497 8137 2.926778 TCCTAGTACTACTCTCGCCC 57.073 55.000 0.00 0.00 0.00 6.13
4498 8138 3.075884 CCATCCTAGTACTACTCTCGCC 58.924 54.545 0.00 0.00 0.00 5.54
4499 8139 3.075884 CCCATCCTAGTACTACTCTCGC 58.924 54.545 0.00 0.00 0.00 5.03
4500 8140 4.066490 CACCCATCCTAGTACTACTCTCG 58.934 52.174 0.00 0.00 0.00 4.04
4501 8141 5.065235 GTCACCCATCCTAGTACTACTCTC 58.935 50.000 0.00 0.00 0.00 3.20
4502 8142 4.141205 GGTCACCCATCCTAGTACTACTCT 60.141 50.000 0.00 0.00 0.00 3.24
4503 8143 4.141205 AGGTCACCCATCCTAGTACTACTC 60.141 50.000 0.00 0.00 31.66 2.59
4504 8144 3.792684 AGGTCACCCATCCTAGTACTACT 59.207 47.826 0.00 0.00 31.66 2.57
4505 8145 4.143543 GAGGTCACCCATCCTAGTACTAC 58.856 52.174 0.00 0.00 33.83 2.73
4506 8146 3.139770 GGAGGTCACCCATCCTAGTACTA 59.860 52.174 1.89 1.89 33.83 1.82
4507 8147 2.091222 GGAGGTCACCCATCCTAGTACT 60.091 54.545 0.00 0.00 33.83 2.73
4508 8148 2.091222 AGGAGGTCACCCATCCTAGTAC 60.091 54.545 2.60 0.00 36.91 2.73
4509 8149 2.091278 CAGGAGGTCACCCATCCTAGTA 60.091 54.545 4.27 0.00 36.69 1.82
4510 8150 1.019650 AGGAGGTCACCCATCCTAGT 58.980 55.000 2.60 0.00 36.91 2.57
4511 8151 1.418334 CAGGAGGTCACCCATCCTAG 58.582 60.000 4.27 0.00 36.69 3.02
4512 8152 0.031111 CCAGGAGGTCACCCATCCTA 60.031 60.000 4.27 0.00 36.69 2.94
4513 8153 1.307343 CCAGGAGGTCACCCATCCT 60.307 63.158 0.00 0.00 38.30 3.24
4514 8154 2.378634 CCCAGGAGGTCACCCATCC 61.379 68.421 0.00 0.00 0.00 3.51
4515 8155 0.914417 TTCCCAGGAGGTCACCCATC 60.914 60.000 0.00 0.00 36.75 3.51
4516 8156 0.916358 CTTCCCAGGAGGTCACCCAT 60.916 60.000 0.00 0.00 36.75 4.00
4517 8157 1.538876 CTTCCCAGGAGGTCACCCA 60.539 63.158 0.00 0.00 36.75 4.51
4518 8158 1.539124 ACTTCCCAGGAGGTCACCC 60.539 63.158 0.00 0.00 36.75 4.61
4519 8159 1.984020 GACTTCCCAGGAGGTCACC 59.016 63.158 20.66 0.00 46.32 4.02
4522 8162 0.615850 CAAGGACTTCCCAGGAGGTC 59.384 60.000 18.15 18.15 46.33 3.85
4523 8163 0.104409 ACAAGGACTTCCCAGGAGGT 60.104 55.000 0.31 0.31 37.15 3.85
4524 8164 0.326264 CACAAGGACTTCCCAGGAGG 59.674 60.000 0.00 0.00 37.41 4.30
4525 8165 1.352083 TCACAAGGACTTCCCAGGAG 58.648 55.000 0.00 0.00 37.41 3.69
4526 8166 1.814429 TTCACAAGGACTTCCCAGGA 58.186 50.000 0.00 0.00 37.41 3.86
4527 8167 2.508526 CTTTCACAAGGACTTCCCAGG 58.491 52.381 0.00 0.00 37.41 4.45
4543 8183 6.231951 GGTAGGCTAGATATGAAACCCTTTC 58.768 44.000 0.00 0.00 40.08 2.62
4544 8184 5.073280 GGGTAGGCTAGATATGAAACCCTTT 59.927 44.000 8.73 0.00 41.75 3.11
4545 8185 4.597940 GGGTAGGCTAGATATGAAACCCTT 59.402 45.833 8.73 0.00 41.75 3.95
4546 8186 4.168883 GGGTAGGCTAGATATGAAACCCT 58.831 47.826 8.73 0.00 41.75 4.34
4547 8187 3.263681 GGGGTAGGCTAGATATGAAACCC 59.736 52.174 7.65 7.65 43.82 4.11
4548 8188 3.908103 TGGGGTAGGCTAGATATGAAACC 59.092 47.826 0.00 0.00 0.00 3.27
4549 8189 5.071923 AGTTGGGGTAGGCTAGATATGAAAC 59.928 44.000 0.00 0.00 0.00 2.78
4550 8190 5.224441 AGTTGGGGTAGGCTAGATATGAAA 58.776 41.667 0.00 0.00 0.00 2.69
4551 8191 4.827789 AGTTGGGGTAGGCTAGATATGAA 58.172 43.478 0.00 0.00 0.00 2.57
4552 8192 4.487282 AGTTGGGGTAGGCTAGATATGA 57.513 45.455 0.00 0.00 0.00 2.15
4553 8193 4.348168 ACAAGTTGGGGTAGGCTAGATATG 59.652 45.833 7.96 0.00 0.00 1.78
4554 8194 4.567857 ACAAGTTGGGGTAGGCTAGATAT 58.432 43.478 7.96 0.00 0.00 1.63
4555 8195 4.003584 ACAAGTTGGGGTAGGCTAGATA 57.996 45.455 7.96 0.00 0.00 1.98
4556 8196 2.846950 ACAAGTTGGGGTAGGCTAGAT 58.153 47.619 7.96 0.00 0.00 1.98
4557 8197 2.337359 ACAAGTTGGGGTAGGCTAGA 57.663 50.000 7.96 0.00 0.00 2.43
4558 8198 3.081804 CAAACAAGTTGGGGTAGGCTAG 58.918 50.000 7.96 0.00 33.18 3.42
4559 8199 3.149005 CAAACAAGTTGGGGTAGGCTA 57.851 47.619 7.96 0.00 33.18 3.93
4560 8200 1.995376 CAAACAAGTTGGGGTAGGCT 58.005 50.000 7.96 0.00 33.18 4.58
4569 8209 6.200097 CGAAACCTTTTATCCCAAACAAGTTG 59.800 38.462 0.00 0.00 36.94 3.16
4570 8210 6.127281 ACGAAACCTTTTATCCCAAACAAGTT 60.127 34.615 0.00 0.00 0.00 2.66
4571 8211 5.361571 ACGAAACCTTTTATCCCAAACAAGT 59.638 36.000 0.00 0.00 0.00 3.16
4572 8212 5.689961 CACGAAACCTTTTATCCCAAACAAG 59.310 40.000 0.00 0.00 0.00 3.16
4573 8213 5.360144 TCACGAAACCTTTTATCCCAAACAA 59.640 36.000 0.00 0.00 0.00 2.83
4574 8214 4.888239 TCACGAAACCTTTTATCCCAAACA 59.112 37.500 0.00 0.00 0.00 2.83
4575 8215 5.441709 TCACGAAACCTTTTATCCCAAAC 57.558 39.130 0.00 0.00 0.00 2.93
4576 8216 6.943718 ACTATCACGAAACCTTTTATCCCAAA 59.056 34.615 0.00 0.00 0.00 3.28
4577 8217 6.373216 CACTATCACGAAACCTTTTATCCCAA 59.627 38.462 0.00 0.00 0.00 4.12
4578 8218 5.878116 CACTATCACGAAACCTTTTATCCCA 59.122 40.000 0.00 0.00 0.00 4.37
4579 8219 6.110707 TCACTATCACGAAACCTTTTATCCC 58.889 40.000 0.00 0.00 0.00 3.85
4580 8220 7.787725 ATCACTATCACGAAACCTTTTATCC 57.212 36.000 0.00 0.00 0.00 2.59
4581 8221 9.530633 ACTATCACTATCACGAAACCTTTTATC 57.469 33.333 0.00 0.00 0.00 1.75
4582 8222 9.314321 CACTATCACTATCACGAAACCTTTTAT 57.686 33.333 0.00 0.00 0.00 1.40
4583 8223 8.308931 ACACTATCACTATCACGAAACCTTTTA 58.691 33.333 0.00 0.00 0.00 1.52
4584 8224 7.159372 ACACTATCACTATCACGAAACCTTTT 58.841 34.615 0.00 0.00 0.00 2.27
4585 8225 6.698380 ACACTATCACTATCACGAAACCTTT 58.302 36.000 0.00 0.00 0.00 3.11
4586 8226 6.282199 ACACTATCACTATCACGAAACCTT 57.718 37.500 0.00 0.00 0.00 3.50
4587 8227 5.916661 ACACTATCACTATCACGAAACCT 57.083 39.130 0.00 0.00 0.00 3.50
4588 8228 7.423199 TGATACACTATCACTATCACGAAACC 58.577 38.462 0.00 0.00 40.09 3.27
4601 8241 9.059260 CCAATTCATCATTGTGATACACTATCA 57.941 33.333 0.00 0.00 40.87 2.15
4602 8242 8.509690 CCCAATTCATCATTGTGATACACTATC 58.490 37.037 0.00 0.00 40.87 2.08
4603 8243 7.040201 GCCCAATTCATCATTGTGATACACTAT 60.040 37.037 0.00 0.00 40.87 2.12
4604 8244 6.262944 GCCCAATTCATCATTGTGATACACTA 59.737 38.462 0.00 0.00 40.87 2.74
4605 8245 5.068198 GCCCAATTCATCATTGTGATACACT 59.932 40.000 0.00 0.00 40.87 3.55
4606 8246 5.163530 TGCCCAATTCATCATTGTGATACAC 60.164 40.000 0.00 0.00 40.87 2.90
4850 8490 3.471430 TGGGAAATGGTTGATGGTCAT 57.529 42.857 0.00 0.00 0.00 3.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.