Multiple sequence alignment - TraesCS5B01G549700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G549700 chr5B 100.000 7531 0 0 1 7531 701453508 701461038 0.000000e+00 13908.0
1 TraesCS5B01G549700 chr5B 84.295 312 43 2 1168 1478 165759856 165760162 4.420000e-77 300.0
2 TraesCS5B01G549700 chr5B 83.067 313 47 2 1167 1478 166151468 166151775 5.750000e-71 279.0
3 TraesCS5B01G549700 chr5D 95.231 3418 109 23 2870 6271 549851429 549854808 0.000000e+00 5360.0
4 TraesCS5B01G549700 chr5D 89.650 2087 127 55 820 2872 549849330 549851361 0.000000e+00 2575.0
5 TraesCS5B01G549700 chr5D 91.278 1158 51 21 6260 7392 549854830 549855962 0.000000e+00 1533.0
6 TraesCS5B01G549700 chr5D 89.438 729 54 14 1 709 549823733 549824458 0.000000e+00 898.0
7 TraesCS5B01G549700 chr5D 93.827 81 3 1 710 788 549849132 549849212 3.690000e-23 121.0
8 TraesCS5B01G549700 chr4A 95.842 2766 78 16 2870 5619 617948957 617946213 0.000000e+00 4436.0
9 TraesCS5B01G549700 chr4A 94.318 1848 69 6 1056 2872 617950851 617949009 0.000000e+00 2798.0
10 TraesCS5B01G549700 chr4A 92.096 1126 51 18 6405 7506 617945700 617944589 0.000000e+00 1552.0
11 TraesCS5B01G549700 chr4A 88.049 820 70 16 1 794 617952301 617951484 0.000000e+00 946.0
12 TraesCS5B01G549700 chr4A 94.747 495 19 3 5704 6198 617946221 617945734 0.000000e+00 763.0
13 TraesCS5B01G549700 chr4A 88.327 257 28 2 146 401 217629743 217629488 2.640000e-79 307.0
14 TraesCS5B01G549700 chr4A 88.550 262 9 4 813 1062 617951402 617951150 1.590000e-76 298.0
15 TraesCS5B01G549700 chr4A 87.072 263 30 4 146 406 217568246 217567986 2.060000e-75 294.0
16 TraesCS5B01G549700 chr4A 87.072 263 30 4 146 406 217595220 217594960 2.060000e-75 294.0
17 TraesCS5B01G549700 chr4A 84.615 182 13 5 7360 7527 617944423 617944243 4.670000e-37 167.0
18 TraesCS5B01G549700 chr3A 85.825 388 43 9 4153 4533 32177531 32177913 1.180000e-107 401.0
19 TraesCS5B01G549700 chr3D 86.464 362 42 5 4179 4534 23086396 23086756 2.550000e-104 390.0
20 TraesCS5B01G549700 chr6A 87.658 316 31 4 1165 1478 34547470 34547161 2.000000e-95 361.0
21 TraesCS5B01G549700 chr6A 81.749 263 29 10 1784 2031 34546564 34546306 1.280000e-47 202.0
22 TraesCS5B01G549700 chr4D 89.712 243 25 0 146 388 278285125 278285367 2.040000e-80 311.0
23 TraesCS5B01G549700 chr4D 97.059 34 1 0 1 34 508422889 508422922 2.940000e-04 58.4
24 TraesCS5B01G549700 chrUn 82.482 274 38 7 1765 2031 459259591 459259321 1.630000e-56 231.0
25 TraesCS5B01G549700 chr7B 81.639 305 19 16 1434 1714 478478158 478478449 1.270000e-52 219.0
26 TraesCS5B01G549700 chr1D 94.175 103 2 2 1612 1714 460325971 460325873 3.640000e-33 154.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G549700 chr5B 701453508 701461038 7530 False 13908.000000 13908 100.000000 1 7531 1 chr5B.!!$F3 7530
1 TraesCS5B01G549700 chr5D 549849132 549855962 6830 False 2397.250000 5360 92.496500 710 7392 4 chr5D.!!$F2 6682
2 TraesCS5B01G549700 chr5D 549823733 549824458 725 False 898.000000 898 89.438000 1 709 1 chr5D.!!$F1 708
3 TraesCS5B01G549700 chr4A 617944243 617952301 8058 True 1565.714286 4436 91.173857 1 7527 7 chr4A.!!$R4 7526
4 TraesCS5B01G549700 chr6A 34546306 34547470 1164 True 281.500000 361 84.703500 1165 2031 2 chr6A.!!$R1 866

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
184 185 0.321210 TTTTCGGAGAAGCGCCATCA 60.321 50.000 2.29 0.00 45.90 3.07 F
625 656 0.530870 GCAGGATAGAAGCACCGGAC 60.531 60.000 9.46 0.00 0.00 4.79 F
807 843 0.618458 TTCCATCAGGTTTCCGGAGG 59.382 55.000 3.34 0.00 43.31 4.30 F
2135 3035 0.236711 GTGGCGTATCATGATGCTGC 59.763 55.000 18.72 21.02 0.00 5.25 F
2151 3051 0.527565 CTGCGGTTTCCTTCCAATGG 59.472 55.000 0.00 0.00 0.00 3.16 F
2190 3090 0.613260 CATCCGTTGACCCTCCAGAA 59.387 55.000 0.00 0.00 0.00 3.02 F
2679 3579 1.270550 GTCACCATTGAAAGGGCAGTG 59.729 52.381 0.00 0.00 31.90 3.66 F
4419 5390 0.473755 TTTCTTCTGGTCTGGCTGCA 59.526 50.000 0.50 0.00 0.00 4.41 F
4866 5841 1.139095 GCCCGTCCTTCTGTAGTCG 59.861 63.158 0.00 0.00 0.00 4.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1501 2353 0.759346 AGTCTGTTCAAAGCGGGAGT 59.241 50.000 0.00 0.0 0.00 3.85 R
2117 3016 1.223417 CGCAGCATCATGATACGCCA 61.223 55.000 8.15 0.0 0.00 5.69 R
2525 3425 1.885049 AGCTAGAGATGCCCAAGGAA 58.115 50.000 0.00 0.0 0.00 3.36 R
3588 4559 2.360165 GCTTTGCAGGCAAGCATAGTAT 59.640 45.455 15.16 0.0 45.19 2.12 R
3731 4702 3.181493 CCAACACCATTGCTAGCTGATTC 60.181 47.826 17.23 0.0 0.00 2.52 R
3855 4826 3.756117 AGGTCAACCCTGAGTTCAAATC 58.244 45.455 0.00 0.0 44.08 2.17 R
4546 5517 2.330216 AGTGCTAGGTCTTGGTCACTT 58.670 47.619 0.00 0.0 31.51 3.16 R
5634 6626 0.822121 ACAGAAGTTGAAACGGGGCC 60.822 55.000 0.00 0.0 0.00 5.80 R
6861 7894 1.111277 AACTTGTCACAAGCCAACCC 58.889 50.000 17.93 0.0 0.00 4.11 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
80 81 4.807304 TGTTTGTTTTCGTCCACTCTCTAC 59.193 41.667 0.00 0.00 0.00 2.59
113 114 0.956633 AAGGTAGTCGCGTGAAGTGA 59.043 50.000 5.77 0.00 36.96 3.41
177 178 2.347731 ACGAGGAATTTTCGGAGAAGC 58.652 47.619 15.00 0.00 45.90 3.86
184 185 0.321210 TTTTCGGAGAAGCGCCATCA 60.321 50.000 2.29 0.00 45.90 3.07
274 275 2.501723 CAGGAGGAAGGAAAGGAATCGA 59.498 50.000 0.00 0.00 0.00 3.59
292 293 6.319911 GGAATCGATGGGAGAGAAAATTTCTT 59.680 38.462 9.84 0.36 40.87 2.52
302 303 6.292596 GGAGAGAAAATTTCTTGGATCGATCG 60.293 42.308 18.81 9.36 40.87 3.69
380 381 2.745037 CGGGGTTTTCTCCACCGA 59.255 61.111 0.00 0.00 41.47 4.69
395 396 5.368523 TCTCCACCGATTTTTACAGGGATAT 59.631 40.000 0.00 0.00 0.00 1.63
439 455 1.770518 GGGGGTGTAGGGGGAGATG 60.771 68.421 0.00 0.00 0.00 2.90
483 512 1.667724 CGAACGACGTACATACTCCCT 59.332 52.381 0.00 0.00 37.22 4.20
534 563 1.271488 CCAACCAAAACGCCCTAGGTA 60.271 52.381 8.29 0.00 31.10 3.08
568 597 2.955660 TCAAGAGCCGAAACACCATTTT 59.044 40.909 0.00 0.00 0.00 1.82
580 609 6.806739 CGAAACACCATTTTCCTAAGAATTCC 59.193 38.462 0.65 0.00 32.67 3.01
582 611 4.705023 ACACCATTTTCCTAAGAATTCCCG 59.295 41.667 0.65 0.00 0.00 5.14
585 614 4.036852 CCATTTTCCTAAGAATTCCCGAGC 59.963 45.833 0.65 0.00 0.00 5.03
620 651 0.833287 TCCTGGCAGGATAGAAGCAC 59.167 55.000 32.01 0.00 40.06 4.40
625 656 0.530870 GCAGGATAGAAGCACCGGAC 60.531 60.000 9.46 0.00 0.00 4.79
634 665 0.693049 AAGCACCGGACTTGATCCTT 59.307 50.000 9.46 0.00 46.69 3.36
636 667 1.087501 GCACCGGACTTGATCCTTTC 58.912 55.000 9.46 0.00 46.69 2.62
805 841 2.961531 TTTTCCATCAGGTTTCCGGA 57.038 45.000 0.00 0.00 35.89 5.14
806 842 2.489938 TTTCCATCAGGTTTCCGGAG 57.510 50.000 3.34 0.00 30.24 4.63
807 843 0.618458 TTCCATCAGGTTTCCGGAGG 59.382 55.000 3.34 0.00 43.31 4.30
808 844 1.910580 TCCATCAGGTTTCCGGAGGC 61.911 60.000 3.34 0.92 42.09 4.70
845 968 9.458374 TTGAAAATTTCATAAGAAGTTCGGTTC 57.542 29.630 9.41 0.00 39.84 3.62
857 980 5.473504 AGAAGTTCGGTTCTGTAAATTGCAT 59.526 36.000 0.00 0.00 35.37 3.96
863 986 4.176271 GGTTCTGTAAATTGCATCAAGCC 58.824 43.478 0.00 0.00 44.83 4.35
864 987 4.176271 GTTCTGTAAATTGCATCAAGCCC 58.824 43.478 0.00 0.00 44.83 5.19
865 988 3.429492 TCTGTAAATTGCATCAAGCCCA 58.571 40.909 0.00 0.00 44.83 5.36
914 1037 2.202756 GCCTCCGTTCCGTAGCAG 60.203 66.667 0.00 0.00 0.00 4.24
998 1142 4.157120 GATCCACCCACCCGACCG 62.157 72.222 0.00 0.00 0.00 4.79
1495 2347 1.831736 TCTCCAAGGTTTCCGATCTCC 59.168 52.381 0.00 0.00 0.00 3.71
1500 2352 1.143401 GGTTTCCGATCTCCGACCC 59.857 63.158 0.00 0.00 41.76 4.46
1501 2353 1.610554 GGTTTCCGATCTCCGACCCA 61.611 60.000 0.00 0.00 41.76 4.51
1549 2401 1.540580 GCTAATTCGCCCCTCTGTACC 60.541 57.143 0.00 0.00 0.00 3.34
1558 2410 2.772515 GCCCCTCTGTACCTCAGTTTAT 59.227 50.000 0.00 0.00 43.97 1.40
1578 2430 2.268920 CACTGGTGGTGGATCCGG 59.731 66.667 7.39 0.00 41.90 5.14
1594 2446 1.961394 TCCGGCTGCATAACTAGTAGG 59.039 52.381 0.50 0.00 0.00 3.18
1741 2624 7.444629 GTATGTCATTGCATACTCATCCAAT 57.555 36.000 16.97 0.00 44.57 3.16
1909 2793 2.408271 TTCTATCAAGCTGGCCACTG 57.592 50.000 0.00 0.00 0.00 3.66
1934 2818 6.974932 AGCAAGTCTGATAGTACATGTTTG 57.025 37.500 2.30 0.00 0.00 2.93
2046 2944 1.521681 GCTGGGTCTGACCGCATAC 60.522 63.158 19.98 6.90 39.83 2.39
2095 2994 3.906720 AGTATAAACGGTCACATGCCT 57.093 42.857 0.00 0.00 0.00 4.75
2117 3016 7.093814 TGCCTCTGCATACTTATCAAAATTTGT 60.094 33.333 5.56 0.00 44.23 2.83
2135 3035 0.236711 GTGGCGTATCATGATGCTGC 59.763 55.000 18.72 21.02 0.00 5.25
2137 3037 1.494628 GCGTATCATGATGCTGCGG 59.505 57.895 18.72 5.35 0.00 5.69
2141 3041 2.348872 CGTATCATGATGCTGCGGTTTC 60.349 50.000 18.72 0.00 0.00 2.78
2151 3051 0.527565 CTGCGGTTTCCTTCCAATGG 59.472 55.000 0.00 0.00 0.00 3.16
2153 3053 0.811281 GCGGTTTCCTTCCAATGGAG 59.189 55.000 0.86 0.00 34.76 3.86
2190 3090 0.613260 CATCCGTTGACCCTCCAGAA 59.387 55.000 0.00 0.00 0.00 3.02
2266 3166 7.499321 TGTCGTGTTGTTTATGAAACCTAAT 57.501 32.000 0.00 0.00 40.67 1.73
2368 3268 3.118884 TCGTTCAGTTGATAAGGGCTACC 60.119 47.826 0.00 0.00 0.00 3.18
2487 3387 5.088739 CGACTCAAATTTTACATCAGCCAC 58.911 41.667 0.00 0.00 0.00 5.01
2525 3425 3.714144 ACAGATACTACTGGTCCTTGCT 58.286 45.455 0.00 0.00 41.59 3.91
2557 3457 9.362151 GGGCATCTCTAGCTTCTAATATATAGT 57.638 37.037 0.00 0.00 0.00 2.12
2622 3522 7.971722 CCCTAGGAAAATTACAACGTAAAATGG 59.028 37.037 11.48 0.00 0.00 3.16
2679 3579 1.270550 GTCACCATTGAAAGGGCAGTG 59.729 52.381 0.00 0.00 31.90 3.66
2841 3742 6.249951 ACCCAATTTTGTATTGGTAGCACTA 58.750 36.000 13.75 0.00 45.32 2.74
3588 4559 6.659745 TTTGGTCTGCTAAGTCTACTACAA 57.340 37.500 0.00 0.00 0.00 2.41
3855 4826 7.660617 AGTTCTATGAGGATGATGCTTACAATG 59.339 37.037 0.00 0.00 0.00 2.82
3867 4838 7.532571 TGATGCTTACAATGATTTGAACTCAG 58.467 34.615 0.00 0.00 36.64 3.35
4419 5390 0.473755 TTTCTTCTGGTCTGGCTGCA 59.526 50.000 0.50 0.00 0.00 4.41
4508 5479 8.879227 TGTGGAGGATTTCATATATGTATGTCA 58.121 33.333 12.42 0.00 39.01 3.58
4570 5544 2.972713 TGACCAAGACCTAGCACTTCTT 59.027 45.455 0.00 0.00 0.00 2.52
4571 5545 3.006967 TGACCAAGACCTAGCACTTCTTC 59.993 47.826 0.00 0.00 0.00 2.87
4572 5546 3.243724 ACCAAGACCTAGCACTTCTTCT 58.756 45.455 0.00 0.00 0.00 2.85
4573 5547 3.259625 ACCAAGACCTAGCACTTCTTCTC 59.740 47.826 0.00 0.00 0.00 2.87
4574 5548 3.259374 CCAAGACCTAGCACTTCTTCTCA 59.741 47.826 0.00 0.00 0.00 3.27
4575 5549 4.262635 CCAAGACCTAGCACTTCTTCTCAA 60.263 45.833 0.00 0.00 0.00 3.02
4649 5623 6.482308 AGTGTATGCTTTCGTTTCAAGTTAGT 59.518 34.615 0.00 0.00 0.00 2.24
4650 5624 6.573725 GTGTATGCTTTCGTTTCAAGTTAGTG 59.426 38.462 0.00 0.00 0.00 2.74
4651 5625 4.545823 TGCTTTCGTTTCAAGTTAGTGG 57.454 40.909 0.00 0.00 0.00 4.00
4652 5626 3.942748 TGCTTTCGTTTCAAGTTAGTGGT 59.057 39.130 0.00 0.00 0.00 4.16
4653 5627 4.396790 TGCTTTCGTTTCAAGTTAGTGGTT 59.603 37.500 0.00 0.00 0.00 3.67
4654 5628 5.106078 TGCTTTCGTTTCAAGTTAGTGGTTT 60.106 36.000 0.00 0.00 0.00 3.27
4655 5629 5.803461 GCTTTCGTTTCAAGTTAGTGGTTTT 59.197 36.000 0.00 0.00 0.00 2.43
4656 5630 6.968335 GCTTTCGTTTCAAGTTAGTGGTTTTA 59.032 34.615 0.00 0.00 0.00 1.52
4657 5631 7.044510 GCTTTCGTTTCAAGTTAGTGGTTTTAC 60.045 37.037 0.00 0.00 0.00 2.01
4710 5684 9.392259 AGGTAATTAGTTAACTCCATGCTAAAC 57.608 33.333 12.39 0.08 32.33 2.01
4723 5697 5.709631 TCCATGCTAAACATTTAGTGCTCAA 59.290 36.000 11.93 0.00 41.63 3.02
4764 5738 5.539193 ACTGGCTGACTACTTGTACTTTAGT 59.461 40.000 0.00 0.00 0.00 2.24
4765 5739 6.041751 ACTGGCTGACTACTTGTACTTTAGTT 59.958 38.462 0.00 0.00 0.00 2.24
4866 5841 1.139095 GCCCGTCCTTCTGTAGTCG 59.861 63.158 0.00 0.00 0.00 4.18
5171 6147 4.155063 TGTCATGATTGGGGTCATAGTG 57.845 45.455 0.00 0.00 36.72 2.74
5194 6170 5.306937 TGAAAAGGTCTAATGAGGTGAGTGA 59.693 40.000 0.00 0.00 0.00 3.41
5197 6173 4.421131 AGGTCTAATGAGGTGAGTGAACT 58.579 43.478 0.00 0.00 0.00 3.01
5198 6174 4.221703 AGGTCTAATGAGGTGAGTGAACTG 59.778 45.833 0.00 0.00 0.00 3.16
5209 6185 1.808945 GAGTGAACTGATGCCAACAGG 59.191 52.381 6.92 0.00 39.38 4.00
5231 6207 6.155910 CAGGAGGGCAATACTATCATCATACT 59.844 42.308 0.00 0.00 0.00 2.12
5232 6208 6.382570 AGGAGGGCAATACTATCATCATACTC 59.617 42.308 0.00 0.00 0.00 2.59
5235 6211 8.844865 AGGGCAATACTATCATCATACTCATA 57.155 34.615 0.00 0.00 0.00 2.15
5236 6212 8.700051 AGGGCAATACTATCATCATACTCATAC 58.300 37.037 0.00 0.00 0.00 2.39
5237 6213 8.478066 GGGCAATACTATCATCATACTCATACA 58.522 37.037 0.00 0.00 0.00 2.29
5263 6251 6.284459 ACCTTGTGCTGAATATAGAAGCTAC 58.716 40.000 0.00 4.07 37.82 3.58
5266 6254 6.471233 TGTGCTGAATATAGAAGCTACTGT 57.529 37.500 0.00 0.00 37.82 3.55
5385 6377 5.055265 TGAAACACCTGAAGGGAATAACA 57.945 39.130 0.56 0.00 40.27 2.41
5415 6407 6.649557 CGTATAGGATGACCAATAAACTTCCC 59.350 42.308 0.00 0.00 38.94 3.97
5569 6561 7.568349 TCTTCTGAGCAAGGTCATATTACATT 58.432 34.615 2.09 0.00 0.00 2.71
5619 6611 8.169977 AGTTATGGTCATATGCCTATTTTGTG 57.830 34.615 14.63 0.00 0.00 3.33
5634 6626 8.594687 GCCTATTTTGTGTGCTGTAATTTATTG 58.405 33.333 0.00 0.00 0.00 1.90
5652 6644 0.821711 TGGCCCCGTTTCAACTTCTG 60.822 55.000 0.00 0.00 0.00 3.02
5665 6657 7.531871 CGTTTCAACTTCTGTAACAGATTCATG 59.468 37.037 0.00 0.00 40.39 3.07
5666 6658 8.345565 GTTTCAACTTCTGTAACAGATTCATGT 58.654 33.333 0.00 0.00 40.39 3.21
5667 6659 7.425577 TCAACTTCTGTAACAGATTCATGTG 57.574 36.000 0.00 0.00 40.39 3.21
5670 6662 6.701340 ACTTCTGTAACAGATTCATGTGCTA 58.299 36.000 0.00 0.00 40.39 3.49
5709 6701 7.168804 GCTATTTCATTATGAGCTTTCCTTTGC 59.831 37.037 0.00 0.00 0.00 3.68
5783 6775 3.530910 AACTAAGCTGCGCCGTGGT 62.531 57.895 4.18 0.00 0.00 4.16
5863 6855 1.435256 AGTATAAGGATTGCCCGCCT 58.565 50.000 0.00 0.00 40.87 5.52
5909 6901 6.608002 ACCTTTCTACCTATGAGTTACTCAGG 59.392 42.308 20.12 17.95 44.08 3.86
5913 6905 4.473477 ACCTATGAGTTACTCAGGTTGC 57.527 45.455 20.12 0.00 44.08 4.17
5978 6970 1.845809 GACTGCGCCAAGGACAACAG 61.846 60.000 4.18 0.00 0.00 3.16
6083 7075 2.069273 CAGGTCCGCTAACTGTCTTTG 58.931 52.381 0.00 0.00 0.00 2.77
6239 7231 0.040157 TTTCTGCATGCGACACTTGC 60.040 50.000 14.09 0.00 46.82 4.01
6246 7238 1.717113 CATGCGACACTTGCAACATTG 59.283 47.619 0.00 0.00 46.87 2.82
6271 7263 4.710423 ATCTCTGCTACACTACACACAG 57.290 45.455 0.00 0.00 0.00 3.66
6273 7265 4.142038 TCTCTGCTACACTACACACAGAA 58.858 43.478 0.00 0.00 34.05 3.02
6275 7267 5.243954 TCTCTGCTACACTACACACAGAAAT 59.756 40.000 0.00 0.00 34.05 2.17
6276 7268 5.230182 TCTGCTACACTACACACAGAAATG 58.770 41.667 0.00 0.00 31.60 2.32
6278 7270 3.997021 GCTACACTACACACAGAAATGCT 59.003 43.478 0.00 0.00 0.00 3.79
6279 7271 4.452455 GCTACACTACACACAGAAATGCTT 59.548 41.667 0.00 0.00 0.00 3.91
6280 7272 5.389935 GCTACACTACACACAGAAATGCTTC 60.390 44.000 0.00 0.00 0.00 3.86
6281 7273 4.708177 ACACTACACACAGAAATGCTTCT 58.292 39.130 0.00 0.00 42.96 2.85
6283 7275 6.467677 ACACTACACACAGAAATGCTTCTAT 58.532 36.000 0.00 0.00 40.05 1.98
6284 7276 6.936900 ACACTACACACAGAAATGCTTCTATT 59.063 34.615 0.00 0.00 40.05 1.73
6285 7277 7.445402 ACACTACACACAGAAATGCTTCTATTT 59.555 33.333 0.00 0.00 40.05 1.40
6287 7279 9.155975 ACTACACACAGAAATGCTTCTATTTAG 57.844 33.333 0.00 0.00 40.05 1.85
6288 7280 7.986085 ACACACAGAAATGCTTCTATTTAGT 57.014 32.000 0.00 0.00 40.05 2.24
6300 7324 9.810545 ATGCTTCTATTTAGTAGAACAGAGAAC 57.189 33.333 0.00 0.00 42.94 3.01
6367 7391 9.419297 TGTTTAGAAAGTACATGTGTATCAGAC 57.581 33.333 9.11 0.00 32.54 3.51
6368 7392 8.584600 GTTTAGAAAGTACATGTGTATCAGACG 58.415 37.037 9.11 0.00 32.54 4.18
6393 7417 2.783275 CGCTGCTGCTGACACATC 59.217 61.111 14.03 0.00 36.97 3.06
6412 7436 4.681025 ACATCGTTTCACATGCATTGTTTC 59.319 37.500 0.00 0.00 36.00 2.78
6452 7476 0.539986 TTCGCACCCTGGGAATAGAC 59.460 55.000 22.23 0.61 43.09 2.59
6464 7488 3.243434 TGGGAATAGACGCGAGAGAAATC 60.243 47.826 15.93 0.00 0.00 2.17
6648 7681 1.477295 GTAGTAGAGCGCTGGACCTTT 59.523 52.381 18.48 0.00 0.00 3.11
6655 7688 2.464459 CGCTGGACCTTTGATCGCC 61.464 63.158 0.00 0.00 0.00 5.54
6707 7740 5.946377 ACCTCCAGAATCCAGATTTTACAAC 59.054 40.000 0.00 0.00 0.00 3.32
6746 7779 8.417106 ACGTGTATCATACATTTTCTCTCTGAT 58.583 33.333 0.00 0.00 41.34 2.90
6747 7780 8.697960 CGTGTATCATACATTTTCTCTCTGATG 58.302 37.037 0.00 0.00 41.34 3.07
6748 7781 9.755804 GTGTATCATACATTTTCTCTCTGATGA 57.244 33.333 0.00 0.00 41.34 2.92
6792 7825 3.743521 ACAATCTGCTCAGCTGTTGTAA 58.256 40.909 14.67 0.00 33.83 2.41
6861 7894 7.548196 TCTTTTTCACGGCCTTTACTATATG 57.452 36.000 0.00 0.00 0.00 1.78
6862 7895 6.540914 TCTTTTTCACGGCCTTTACTATATGG 59.459 38.462 0.00 0.00 0.00 2.74
6891 7924 5.331532 GCTTGTGACAAGTTTTACAAATCGC 60.332 40.000 24.51 4.56 33.19 4.58
7059 8092 9.157104 TCGCTATAACATAACATCTCAACAAAA 57.843 29.630 0.00 0.00 0.00 2.44
7060 8093 9.935682 CGCTATAACATAACATCTCAACAAAAT 57.064 29.630 0.00 0.00 0.00 1.82
7118 8151 1.206132 TCGCCACAGGTATGTTACAGG 59.794 52.381 0.00 0.00 37.65 4.00
7191 8224 0.596600 AAGCAGACACACACGTACCG 60.597 55.000 0.00 0.00 0.00 4.02
7278 8311 6.145338 GCTACCATAAGCAACTACTCTACA 57.855 41.667 0.00 0.00 42.30 2.74
7279 8312 6.570692 GCTACCATAAGCAACTACTCTACAA 58.429 40.000 0.00 0.00 42.30 2.41
7280 8313 6.697892 GCTACCATAAGCAACTACTCTACAAG 59.302 42.308 0.00 0.00 42.30 3.16
7282 8315 7.241042 ACCATAAGCAACTACTCTACAAGAA 57.759 36.000 0.00 0.00 0.00 2.52
7283 8316 7.324178 ACCATAAGCAACTACTCTACAAGAAG 58.676 38.462 0.00 0.00 0.00 2.85
7284 8317 7.038941 ACCATAAGCAACTACTCTACAAGAAGT 60.039 37.037 0.00 0.00 0.00 3.01
7305 8362 1.474077 CCAGAAGTAACATTGCTGGGC 59.526 52.381 0.00 0.00 41.81 5.36
7392 8449 9.712305 GAAGCAAGCAATTATCTTAGGTATCTA 57.288 33.333 0.00 0.00 0.00 1.98
7408 8465 4.282195 GGTATCTAGGTGCACTATCTTGCT 59.718 45.833 17.98 5.77 43.41 3.91
7412 8469 2.983229 AGGTGCACTATCTTGCTTCTG 58.017 47.619 17.98 0.00 43.41 3.02
7413 8470 2.568956 AGGTGCACTATCTTGCTTCTGA 59.431 45.455 17.98 0.00 43.41 3.27
7488 8545 7.984050 AGAATCTTTACTCCACATGTATGACAG 59.016 37.037 0.00 0.00 0.00 3.51
7520 8902 1.597742 AACCAGCTGCAGTACACAAG 58.402 50.000 16.64 0.23 0.00 3.16
7527 8909 5.391310 CCAGCTGCAGTACACAAGATTAAAG 60.391 44.000 16.64 0.00 0.00 1.85
7528 8910 4.154918 AGCTGCAGTACACAAGATTAAAGC 59.845 41.667 16.64 0.00 0.00 3.51
7529 8911 4.641954 CTGCAGTACACAAGATTAAAGCG 58.358 43.478 5.25 0.00 0.00 4.68
7530 8912 3.435327 TGCAGTACACAAGATTAAAGCGG 59.565 43.478 0.00 0.00 0.00 5.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
80 81 4.524053 GACTACCTTGGGGTAAAATGGAG 58.476 47.826 0.00 0.00 46.24 3.86
113 114 1.610522 GTGTGCTCTCCAAATGCTTGT 59.389 47.619 0.00 0.00 0.00 3.16
177 178 5.227805 CGATTTTCTAACACAAATGATGGCG 59.772 40.000 0.00 0.00 0.00 5.69
218 219 2.501261 ACGTGCTCTTTTTACTTCCCC 58.499 47.619 0.00 0.00 0.00 4.81
274 275 5.591877 CGATCCAAGAAATTTTCTCTCCCAT 59.408 40.000 11.92 1.52 39.61 4.00
292 293 1.893137 CTAACCCCATCGATCGATCCA 59.107 52.381 27.20 7.59 31.62 3.41
302 303 0.267960 TCCCTCCTCCTAACCCCATC 59.732 60.000 0.00 0.00 0.00 3.51
428 444 1.572415 ACTCCGTAACATCTCCCCCTA 59.428 52.381 0.00 0.00 0.00 3.53
439 455 2.092211 CGTTTGCTCATGACTCCGTAAC 59.908 50.000 0.00 0.00 0.00 2.50
483 512 6.424883 AGACCGAAATCTCTACTCCTAAAGA 58.575 40.000 0.00 0.00 0.00 2.52
568 597 2.184533 TGTGCTCGGGAATTCTTAGGA 58.815 47.619 5.23 0.00 0.00 2.94
612 642 1.480954 GGATCAAGTCCGGTGCTTCTA 59.519 52.381 0.00 0.00 37.23 2.10
614 644 2.768834 GGATCAAGTCCGGTGCTTC 58.231 57.895 0.00 0.00 37.23 3.86
634 665 4.272489 CAAATAGGACATGCCCTCTTGAA 58.728 43.478 2.79 0.00 37.74 2.69
636 667 2.360165 GCAAATAGGACATGCCCTCTTG 59.640 50.000 2.79 10.80 37.74 3.02
693 726 2.882876 GGAGTTGCTCGGCTCGTA 59.117 61.111 0.00 0.00 32.83 3.43
789 825 1.910580 GCCTCCGGAAACCTGATGGA 61.911 60.000 5.23 0.00 37.04 3.41
791 827 0.745845 CAGCCTCCGGAAACCTGATG 60.746 60.000 16.59 4.62 0.00 3.07
792 828 1.604378 CAGCCTCCGGAAACCTGAT 59.396 57.895 16.59 0.00 0.00 2.90
795 831 4.394712 CGCAGCCTCCGGAAACCT 62.395 66.667 5.23 0.00 0.00 3.50
796 832 4.388499 TCGCAGCCTCCGGAAACC 62.388 66.667 5.23 0.00 0.00 3.27
797 833 3.119096 GTCGCAGCCTCCGGAAAC 61.119 66.667 5.23 0.00 0.00 2.78
798 834 3.171828 TTGTCGCAGCCTCCGGAAA 62.172 57.895 5.23 0.00 0.00 3.13
801 837 3.883744 AACTTGTCGCAGCCTCCGG 62.884 63.158 0.00 0.00 0.00 5.14
802 838 1.961277 AAACTTGTCGCAGCCTCCG 60.961 57.895 0.00 0.00 0.00 4.63
803 839 0.884704 TCAAACTTGTCGCAGCCTCC 60.885 55.000 0.00 0.00 0.00 4.30
804 840 0.944386 TTCAAACTTGTCGCAGCCTC 59.056 50.000 0.00 0.00 0.00 4.70
805 841 1.388547 TTTCAAACTTGTCGCAGCCT 58.611 45.000 0.00 0.00 0.00 4.58
806 842 2.202295 TTTTCAAACTTGTCGCAGCC 57.798 45.000 0.00 0.00 0.00 4.85
807 843 4.267452 TGAAATTTTCAAACTTGTCGCAGC 59.733 37.500 9.36 0.00 36.59 5.25
808 844 5.947503 TGAAATTTTCAAACTTGTCGCAG 57.052 34.783 9.36 0.00 36.59 5.18
810 846 8.280909 TCTTATGAAATTTTCAAACTTGTCGC 57.719 30.769 15.34 0.00 43.95 5.19
816 852 9.463443 CCGAACTTCTTATGAAATTTTCAAACT 57.537 29.630 15.34 2.82 43.95 2.66
817 853 9.244799 ACCGAACTTCTTATGAAATTTTCAAAC 57.755 29.630 15.34 0.80 43.95 2.93
845 968 3.514645 GTGGGCTTGATGCAATTTACAG 58.485 45.455 0.00 0.00 45.15 2.74
857 980 1.422977 TACTGCTTGGGTGGGCTTGA 61.423 55.000 0.00 0.00 0.00 3.02
863 986 0.966179 GGGTTTTACTGCTTGGGTGG 59.034 55.000 0.00 0.00 0.00 4.61
864 987 0.596082 CGGGTTTTACTGCTTGGGTG 59.404 55.000 0.00 0.00 0.00 4.61
865 988 0.538746 CCGGGTTTTACTGCTTGGGT 60.539 55.000 0.00 0.00 0.00 4.51
914 1037 1.921230 GAGACGACGCTCCATTTCTTC 59.079 52.381 0.00 0.00 0.00 2.87
1057 1201 2.436824 GAAGAGGTCCTTGGCCGC 60.437 66.667 0.00 0.00 34.68 6.53
1458 1908 2.203451 ACGACGTGGGAGGTGTCT 60.203 61.111 0.00 0.00 0.00 3.41
1495 2347 2.725203 TTCAAAGCGGGAGTGGGTCG 62.725 60.000 0.00 0.00 0.00 4.79
1500 2352 0.868406 GTCTGTTCAAAGCGGGAGTG 59.132 55.000 0.00 0.00 0.00 3.51
1501 2353 0.759346 AGTCTGTTCAAAGCGGGAGT 59.241 50.000 0.00 0.00 0.00 3.85
1578 2430 4.278669 TCTGTAGCCTACTAGTTATGCAGC 59.721 45.833 0.00 0.00 0.00 5.25
1909 2793 7.459486 CAAACATGTACTATCAGACTTGCTTC 58.541 38.462 0.00 0.00 0.00 3.86
1934 2818 2.028203 ACAATGGCTGGTACAAATTGGC 60.028 45.455 0.00 0.00 37.75 4.52
2095 2994 7.035004 GCCACAAATTTTGATAAGTATGCAGA 58.965 34.615 15.81 0.00 0.00 4.26
2109 3008 4.805192 GCATCATGATACGCCACAAATTTT 59.195 37.500 8.15 0.00 0.00 1.82
2117 3016 1.223417 CGCAGCATCATGATACGCCA 61.223 55.000 8.15 0.00 0.00 5.69
2135 3035 2.200373 ACTCCATTGGAAGGAAACCG 57.800 50.000 6.88 0.00 34.08 4.44
2137 3037 5.881777 GAGTTACTCCATTGGAAGGAAAC 57.118 43.478 6.88 8.51 34.08 2.78
2151 3051 2.563179 TGACAAGGCAGAGGAGTTACTC 59.437 50.000 3.36 3.36 37.77 2.59
2153 3053 3.526534 GATGACAAGGCAGAGGAGTTAC 58.473 50.000 0.00 0.00 0.00 2.50
2266 3166 5.413309 ACCTGAATGAACAAAACAAACCA 57.587 34.783 0.00 0.00 0.00 3.67
2338 3238 6.540189 CCCTTATCAACTGAACGATCTTCAAT 59.460 38.462 8.36 0.00 0.00 2.57
2525 3425 1.885049 AGCTAGAGATGCCCAAGGAA 58.115 50.000 0.00 0.00 0.00 3.36
2571 3471 8.403236 GGTTCTGTTCAACAACTTGTATAAACT 58.597 33.333 0.00 0.00 33.17 2.66
2578 3478 3.697166 AGGGTTCTGTTCAACAACTTGT 58.303 40.909 0.00 0.00 33.17 3.16
2579 3479 4.275936 CCTAGGGTTCTGTTCAACAACTTG 59.724 45.833 0.00 0.00 33.17 3.16
2587 3487 6.843752 TGTAATTTTCCTAGGGTTCTGTTCA 58.156 36.000 9.46 0.00 0.00 3.18
2708 3608 8.689069 GGCTATTTCTCGTACTTTATTAAGACG 58.311 37.037 0.00 4.64 36.81 4.18
3588 4559 2.360165 GCTTTGCAGGCAAGCATAGTAT 59.640 45.455 15.16 0.00 45.19 2.12
3731 4702 3.181493 CCAACACCATTGCTAGCTGATTC 60.181 47.826 17.23 0.00 0.00 2.52
3855 4826 3.756117 AGGTCAACCCTGAGTTCAAATC 58.244 45.455 0.00 0.00 44.08 2.17
4322 5293 6.317789 TCCGGATGATAAATCATGAAAAGC 57.682 37.500 10.12 0.00 46.84 3.51
4419 5390 2.743183 GCTCCCATCAGAAGCATTACGT 60.743 50.000 0.00 0.00 0.00 3.57
4546 5517 2.330216 AGTGCTAGGTCTTGGTCACTT 58.670 47.619 0.00 0.00 31.51 3.16
4572 5546 8.918116 AGCTAAGATGATAACACTCAGTATTGA 58.082 33.333 0.00 0.00 0.00 2.57
4573 5547 8.976471 CAGCTAAGATGATAACACTCAGTATTG 58.024 37.037 0.00 0.00 0.00 1.90
4574 5548 8.700051 ACAGCTAAGATGATAACACTCAGTATT 58.300 33.333 0.00 0.00 0.00 1.89
4575 5549 8.140628 CACAGCTAAGATGATAACACTCAGTAT 58.859 37.037 0.00 0.00 0.00 2.12
4696 5670 5.711976 AGCACTAAATGTTTAGCATGGAGTT 59.288 36.000 11.41 0.00 42.98 3.01
4710 5684 5.237127 TCACACTGACTTTGAGCACTAAATG 59.763 40.000 0.00 0.00 0.00 2.32
4723 5697 3.535561 CCAGTCAACTTCACACTGACTT 58.464 45.455 1.30 0.00 45.85 3.01
4764 5738 4.644234 CCACCATGTATGATGCTGGTAAAA 59.356 41.667 4.87 0.00 39.96 1.52
4765 5739 4.206375 CCACCATGTATGATGCTGGTAAA 58.794 43.478 4.87 0.00 39.96 2.01
4833 5808 1.303643 GGGCCAGGACAACAGGAAG 60.304 63.158 4.39 0.00 0.00 3.46
5171 6147 5.794894 TCACTCACCTCATTAGACCTTTTC 58.205 41.667 0.00 0.00 0.00 2.29
5194 6170 0.038744 CCCTCCTGTTGGCATCAGTT 59.961 55.000 20.84 0.00 0.00 3.16
5209 6185 7.175347 TGAGTATGATGATAGTATTGCCCTC 57.825 40.000 0.00 0.00 0.00 4.30
5231 6207 9.088987 TCTATATTCAGCACAAGGTATGTATGA 57.911 33.333 0.00 0.00 41.46 2.15
5232 6208 9.710900 TTCTATATTCAGCACAAGGTATGTATG 57.289 33.333 0.00 0.00 41.46 2.39
5235 6211 6.708054 GCTTCTATATTCAGCACAAGGTATGT 59.292 38.462 0.00 0.00 45.34 2.29
5236 6212 6.933521 AGCTTCTATATTCAGCACAAGGTATG 59.066 38.462 0.00 0.00 35.88 2.39
5237 6213 7.072263 AGCTTCTATATTCAGCACAAGGTAT 57.928 36.000 0.00 0.00 35.88 2.73
5239 6215 5.365021 AGCTTCTATATTCAGCACAAGGT 57.635 39.130 0.00 0.00 35.88 3.50
5240 6216 6.423302 CAGTAGCTTCTATATTCAGCACAAGG 59.577 42.308 0.00 0.00 35.88 3.61
5241 6217 6.983307 ACAGTAGCTTCTATATTCAGCACAAG 59.017 38.462 0.00 0.00 35.88 3.16
5243 6219 6.471233 ACAGTAGCTTCTATATTCAGCACA 57.529 37.500 0.00 0.00 35.88 4.57
5244 6220 7.625553 CAAACAGTAGCTTCTATATTCAGCAC 58.374 38.462 0.00 0.00 35.88 4.40
5340 6332 8.728337 TCAGATCCTACAATCATTTCAGAAAG 57.272 34.615 1.28 0.00 0.00 2.62
5349 6341 6.070021 TCAGGTGTTTCAGATCCTACAATCAT 60.070 38.462 0.00 0.00 0.00 2.45
5385 6377 2.082140 TGGTCATCCTATACGTGGCT 57.918 50.000 0.00 0.00 34.23 4.75
5415 6407 1.202417 ACATACGGAGAATGCCTCACG 60.202 52.381 0.00 0.00 43.76 4.35
5569 6561 8.856153 TCAAATGCAGACCATAAAACTAGTAA 57.144 30.769 0.00 0.00 32.67 2.24
5619 6611 2.223711 CGGGGCCAATAAATTACAGCAC 60.224 50.000 4.39 0.00 0.00 4.40
5634 6626 0.822121 ACAGAAGTTGAAACGGGGCC 60.822 55.000 0.00 0.00 0.00 5.80
5652 6644 9.793252 AATGAAAATAGCACATGAATCTGTTAC 57.207 29.630 0.00 0.00 0.00 2.50
5679 6671 9.578576 AGGAAAGCTCATAATGAAATAGCATAA 57.421 29.630 0.00 0.00 35.63 1.90
5709 6701 5.054477 TCCTTCAAGAAACACCTAAGAACG 58.946 41.667 0.00 0.00 0.00 3.95
5783 6775 1.668919 GCCGTGATCTTGTCTGTCGAA 60.669 52.381 0.00 0.00 0.00 3.71
5863 6855 5.833131 AGGTAGAACTGAAATTTCAAAGGCA 59.167 36.000 20.82 5.09 36.64 4.75
5909 6901 6.101332 TGCCTTCATATTGAAAAGATGCAAC 58.899 36.000 0.00 0.00 44.77 4.17
5913 6905 7.104043 TCCTTGCCTTCATATTGAAAAGATG 57.896 36.000 3.05 0.00 46.41 2.90
5978 6970 6.690194 TCAGTACTACCTCCTATTCGTTTC 57.310 41.667 0.00 0.00 0.00 2.78
6138 7130 2.119391 GGGAATGCCACACCCCAA 59.881 61.111 0.00 0.00 38.69 4.12
6184 7176 6.461092 GGTTTGAAGAAACTGGTAAGGGAAAG 60.461 42.308 0.00 0.00 41.21 2.62
6187 7179 4.167307 AGGTTTGAAGAAACTGGTAAGGGA 59.833 41.667 0.00 0.00 41.21 4.20
6283 7275 8.244802 GTCTGCTATGTTCTCTGTTCTACTAAA 58.755 37.037 0.00 0.00 0.00 1.85
6284 7276 7.393515 TGTCTGCTATGTTCTCTGTTCTACTAA 59.606 37.037 0.00 0.00 0.00 2.24
6285 7277 6.884836 TGTCTGCTATGTTCTCTGTTCTACTA 59.115 38.462 0.00 0.00 0.00 1.82
6287 7279 5.955488 TGTCTGCTATGTTCTCTGTTCTAC 58.045 41.667 0.00 0.00 0.00 2.59
6288 7280 6.590234 TTGTCTGCTATGTTCTCTGTTCTA 57.410 37.500 0.00 0.00 0.00 2.10
6293 7317 4.993584 ACACTTTGTCTGCTATGTTCTCTG 59.006 41.667 0.00 0.00 0.00 3.35
6300 7324 2.926200 CCTCGACACTTTGTCTGCTATG 59.074 50.000 4.87 0.00 44.85 2.23
6320 7344 5.894807 ACATGTTTAATCACATAAGCTGCC 58.105 37.500 0.00 0.00 35.51 4.85
6393 7417 2.160117 GCGAAACAATGCATGTGAAACG 60.160 45.455 0.00 4.09 42.99 3.60
6452 7476 2.126914 AGGATTCGATTTCTCTCGCG 57.873 50.000 0.00 0.00 38.52 5.87
6464 7488 3.057596 GCCAGAGAGATCTGTAGGATTCG 60.058 52.174 13.30 0.00 36.06 3.34
6540 7564 6.811665 GCAACATGTTCTATGTACTGACAGTA 59.188 38.462 8.48 11.37 39.50 2.74
6542 7566 5.063944 GGCAACATGTTCTATGTACTGACAG 59.936 44.000 8.48 0.00 39.50 3.51
6648 7681 1.802069 TCAAACAATGACGGCGATCA 58.198 45.000 16.62 14.34 31.50 2.92
6655 7688 8.495949 ACAGACTAGTAAATTCAAACAATGACG 58.504 33.333 0.00 0.00 37.92 4.35
6746 7779 9.268268 GTCCGGTGAAATTCATATAGTTATTCA 57.732 33.333 0.00 0.00 0.00 2.57
6747 7780 9.268268 TGTCCGGTGAAATTCATATAGTTATTC 57.732 33.333 0.00 0.00 0.00 1.75
6748 7781 9.621629 TTGTCCGGTGAAATTCATATAGTTATT 57.378 29.630 0.00 0.00 0.00 1.40
6754 7787 6.204688 GCAGATTGTCCGGTGAAATTCATATA 59.795 38.462 0.00 0.00 0.00 0.86
6792 7825 8.532186 ACAGACAGTAGTTGATATTCTGATCT 57.468 34.615 2.83 0.00 34.41 2.75
6861 7894 1.111277 AACTTGTCACAAGCCAACCC 58.889 50.000 17.93 0.00 0.00 4.11
6862 7895 2.959507 AAACTTGTCACAAGCCAACC 57.040 45.000 17.93 0.00 0.00 3.77
6891 7924 2.532250 AGCAGGTTGGGAAATAAGGG 57.468 50.000 0.00 0.00 0.00 3.95
7059 8092 7.944729 AATGAGTAGCCAAATCTGTTGTTAT 57.055 32.000 0.00 0.00 0.00 1.89
7060 8093 7.446931 TGAAATGAGTAGCCAAATCTGTTGTTA 59.553 33.333 0.00 0.00 0.00 2.41
7061 8094 6.265196 TGAAATGAGTAGCCAAATCTGTTGTT 59.735 34.615 0.00 0.00 0.00 2.83
7118 8151 1.600916 GAAGTGACACCCACCCTGC 60.601 63.158 0.84 0.00 46.87 4.85
7244 8277 5.793026 GCTTATGGTAGCAATATCTCAGC 57.207 43.478 0.00 0.00 40.89 4.26
7278 8311 5.471456 CAGCAATGTTACTTCTGGACTTCTT 59.529 40.000 0.00 0.00 0.00 2.52
7279 8312 4.999950 CAGCAATGTTACTTCTGGACTTCT 59.000 41.667 0.00 0.00 0.00 2.85
7280 8313 4.154918 CCAGCAATGTTACTTCTGGACTTC 59.845 45.833 0.53 0.00 45.31 3.01
7282 8315 3.560025 CCCAGCAATGTTACTTCTGGACT 60.560 47.826 8.05 0.00 45.31 3.85
7283 8316 2.749621 CCCAGCAATGTTACTTCTGGAC 59.250 50.000 8.05 0.00 45.31 4.02
7284 8317 2.879756 GCCCAGCAATGTTACTTCTGGA 60.880 50.000 8.05 0.00 45.31 3.86
7353 8410 5.357742 TGCTTGCTTCATCTCCAATACTA 57.642 39.130 0.00 0.00 0.00 1.82
7355 8412 4.970662 TTGCTTGCTTCATCTCCAATAC 57.029 40.909 0.00 0.00 0.00 1.89
7357 8414 6.550108 AGATAATTGCTTGCTTCATCTCCAAT 59.450 34.615 0.00 0.00 0.00 3.16
7488 8545 1.069049 AGCTGGTTTCACCACAAATGC 59.931 47.619 0.00 0.00 44.79 3.56
7508 8890 3.435327 CCGCTTTAATCTTGTGTACTGCA 59.565 43.478 0.00 0.00 0.00 4.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.