Multiple sequence alignment - TraesCS5B01G549500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G549500 chr5B 100.000 4978 0 0 1 4978 701279375 701274398 0.000000e+00 9193.0
1 TraesCS5B01G549500 chr5D 89.971 3420 196 84 964 4311 549773727 549770383 0.000000e+00 4279.0
2 TraesCS5B01G549500 chr5D 86.180 521 31 22 3 510 549774742 549774250 4.410000e-145 525.0
3 TraesCS5B01G549500 chr5D 90.031 321 21 7 3994 4311 549677235 549676923 6.000000e-109 405.0
4 TraesCS5B01G549500 chr5D 85.132 417 29 9 519 908 549774127 549773717 3.610000e-106 396.0
5 TraesCS5B01G549500 chr5D 88.933 253 27 1 3567 3819 549770115 549769864 1.350000e-80 311.0
6 TraesCS5B01G549500 chr5D 93.717 191 12 0 3487 3677 549758233 549758043 2.270000e-73 287.0
7 TraesCS5B01G549500 chr5D 88.158 152 17 1 4827 4978 549675893 549675743 3.960000e-41 180.0
8 TraesCS5B01G549500 chr5D 98.113 53 1 0 4326 4378 549770399 549770347 5.310000e-15 93.5
9 TraesCS5B01G549500 chr4A 89.851 1813 86 40 2352 4134 621291953 621290209 0.000000e+00 2239.0
10 TraesCS5B01G549500 chr4A 82.975 1116 91 37 1000 2051 621293335 621292255 0.000000e+00 917.0
11 TraesCS5B01G549500 chr4A 92.879 323 20 3 4566 4887 621273016 621272696 2.710000e-127 466.0
12 TraesCS5B01G549500 chr4A 85.577 312 34 7 4000 4309 621271348 621271046 2.890000e-82 316.0
13 TraesCS5B01G549500 chr4A 96.111 180 3 3 4133 4311 621290127 621289951 1.750000e-74 291.0
14 TraesCS5B01G549500 chr4A 95.200 125 3 1 4326 4447 621289967 621289843 1.410000e-45 195.0
15 TraesCS5B01G549500 chr4A 83.333 192 22 6 2108 2298 621292227 621292045 8.570000e-38 169.0
16 TraesCS5B01G549500 chr4A 90.476 126 8 3 4447 4572 621282159 621282038 3.990000e-36 163.0
17 TraesCS5B01G549500 chr4A 80.676 207 13 15 567 772 621293621 621293441 8.690000e-28 135.0
18 TraesCS5B01G549500 chr4A 100.000 34 0 0 1877 1910 702161372 702161405 4.160000e-06 63.9
19 TraesCS5B01G549500 chr3D 75.150 334 59 19 2719 3037 536027821 536028145 8.690000e-28 135.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G549500 chr5B 701274398 701279375 4977 True 9193.000000 9193 100.000000 1 4978 1 chr5B.!!$R1 4977
1 TraesCS5B01G549500 chr5D 549769864 549774742 4878 True 1120.900000 4279 89.665800 3 4378 5 chr5D.!!$R3 4375
2 TraesCS5B01G549500 chr5D 549675743 549677235 1492 True 292.500000 405 89.094500 3994 4978 2 chr5D.!!$R2 984
3 TraesCS5B01G549500 chr4A 621289843 621293621 3778 True 657.666667 2239 88.024333 567 4447 6 chr4A.!!$R3 3880
4 TraesCS5B01G549500 chr4A 621271046 621273016 1970 True 391.000000 466 89.228000 4000 4887 2 chr4A.!!$R2 887

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
854 1013 0.179108 CGTCGGATCAAACCTCCCTC 60.179 60.0 0.00 0.00 0.00 4.30 F
904 1063 0.317020 GGCGCAGTTCAAAGACACAC 60.317 55.0 10.83 0.00 0.00 3.82 F
2098 2342 0.250467 AGTCATCACCGTTGCAGCTT 60.250 50.0 0.00 0.00 0.00 3.74 F
2100 2344 0.035317 TCATCACCGTTGCAGCTTCT 59.965 50.0 0.00 0.00 0.00 2.85 F
2302 2552 0.175760 TAGTTCTGTGGCAGATCGGC 59.824 55.0 9.58 9.58 40.39 5.54 F
2421 2709 0.391661 AAGTACAGGCTCGCATGTGG 60.392 55.0 18.17 0.00 41.25 4.17 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2080 2324 0.166814 GAAGCTGCAACGGTGATGAC 59.833 55.000 3.55 0.00 0.00 3.06 R
2100 2344 0.389817 CTTCCTTGTCATCACGCGGA 60.390 55.000 12.47 5.24 0.00 5.54 R
3083 3387 0.034896 AACTGCCACGGATCGAAAGT 59.965 50.000 0.00 0.00 0.00 2.66 R
3364 3676 0.666374 CAAACCACAAGTTCCCGACC 59.334 55.000 0.00 0.00 37.88 4.79 R
3478 3806 0.735978 CACGTCCTGCATCGTTAGCA 60.736 55.000 8.57 0.00 38.23 3.49 R
4061 4425 1.004758 CCCCTCTCAATCCCCTCCA 59.995 63.158 0.00 0.00 0.00 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
57 58 4.119862 CGATTCACCACGACATAATCCTT 58.880 43.478 0.00 0.00 0.00 3.36
120 121 3.086309 CCGGGTGTTAATCGTGCG 58.914 61.111 0.00 0.00 0.00 5.34
121 122 2.398036 CGGGTGTTAATCGTGCGC 59.602 61.111 0.00 0.00 0.00 6.09
122 123 2.398036 GGGTGTTAATCGTGCGCG 59.602 61.111 14.79 14.79 39.92 6.86
123 124 2.276430 GGTGTTAATCGTGCGCGC 60.276 61.111 27.26 27.26 38.14 6.86
125 126 3.107034 TGTTAATCGTGCGCGCGT 61.107 55.556 38.29 25.19 38.14 6.01
126 127 2.640457 GTTAATCGTGCGCGCGTG 60.640 61.111 38.29 21.19 38.14 5.34
127 128 4.492863 TTAATCGTGCGCGCGTGC 62.493 61.111 38.29 35.99 38.14 5.34
168 169 3.673323 CGAACGAGTGGAGATGATCACAA 60.673 47.826 0.00 0.00 36.43 3.33
176 177 4.080687 TGGAGATGATCACAATTGCACAA 58.919 39.130 5.05 0.00 0.00 3.33
178 179 5.100259 GGAGATGATCACAATTGCACAAAG 58.900 41.667 5.05 0.00 0.00 2.77
179 180 4.491676 AGATGATCACAATTGCACAAAGC 58.508 39.130 5.05 0.00 45.96 3.51
180 181 3.029320 TGATCACAATTGCACAAAGCC 57.971 42.857 5.05 0.00 44.83 4.35
182 183 2.222007 TCACAATTGCACAAAGCCAC 57.778 45.000 5.05 0.00 44.83 5.01
183 184 1.479730 TCACAATTGCACAAAGCCACA 59.520 42.857 5.05 0.00 44.83 4.17
186 187 2.937799 ACAATTGCACAAAGCCACAAAG 59.062 40.909 5.05 0.00 44.83 2.77
188 189 1.189752 TTGCACAAAGCCACAAAGGA 58.810 45.000 0.00 0.00 44.83 3.36
226 232 1.346068 GGTAATCAGGAGCAGGCTAGG 59.654 57.143 0.00 0.00 0.00 3.02
227 233 1.051812 TAATCAGGAGCAGGCTAGGC 58.948 55.000 8.55 8.55 0.00 3.93
229 235 0.189574 ATCAGGAGCAGGCTAGGCTA 59.810 55.000 19.78 1.31 42.78 3.93
230 236 0.468958 TCAGGAGCAGGCTAGGCTAG 60.469 60.000 19.78 17.33 42.78 3.42
231 237 1.152355 AGGAGCAGGCTAGGCTAGG 60.152 63.158 19.78 8.93 42.78 3.02
342 353 1.476110 CGGAGGAGGGTAGAGACAGAG 60.476 61.905 0.00 0.00 0.00 3.35
430 441 2.586635 GGTCGAACCGTGTGTGCA 60.587 61.111 0.00 0.00 0.00 4.57
498 515 2.305052 GCCAAGTACCACTACCTTTCCT 59.695 50.000 0.00 0.00 0.00 3.36
500 517 4.324267 CCAAGTACCACTACCTTTCCTTG 58.676 47.826 0.00 0.00 0.00 3.61
510 527 4.580580 ACTACCTTTCCTTGCTTTCTGTTG 59.419 41.667 0.00 0.00 0.00 3.33
511 528 3.631250 ACCTTTCCTTGCTTTCTGTTGA 58.369 40.909 0.00 0.00 0.00 3.18
512 529 3.633986 ACCTTTCCTTGCTTTCTGTTGAG 59.366 43.478 0.00 0.00 0.00 3.02
513 530 3.885297 CCTTTCCTTGCTTTCTGTTGAGA 59.115 43.478 0.00 0.00 0.00 3.27
514 531 4.023365 CCTTTCCTTGCTTTCTGTTGAGAG 60.023 45.833 0.00 0.00 0.00 3.20
540 671 2.682856 ACACAACACACGCAGAGAAATT 59.317 40.909 0.00 0.00 0.00 1.82
544 675 4.449068 ACAACACACGCAGAGAAATTAGAG 59.551 41.667 0.00 0.00 0.00 2.43
545 676 4.521130 ACACACGCAGAGAAATTAGAGA 57.479 40.909 0.00 0.00 0.00 3.10
546 677 4.489810 ACACACGCAGAGAAATTAGAGAG 58.510 43.478 0.00 0.00 0.00 3.20
547 678 4.218635 ACACACGCAGAGAAATTAGAGAGA 59.781 41.667 0.00 0.00 0.00 3.10
588 719 0.322456 TGTGGTAATCAGGCAGGCAC 60.322 55.000 0.00 0.00 0.00 5.01
655 805 4.241555 GACGCGCCATCCTCCCAT 62.242 66.667 5.73 0.00 0.00 4.00
656 806 4.241555 ACGCGCCATCCTCCCATC 62.242 66.667 5.73 0.00 0.00 3.51
657 807 4.240103 CGCGCCATCCTCCCATCA 62.240 66.667 0.00 0.00 0.00 3.07
658 808 2.433446 GCGCCATCCTCCCATCAT 59.567 61.111 0.00 0.00 0.00 2.45
659 809 1.970114 GCGCCATCCTCCCATCATG 60.970 63.158 0.00 0.00 0.00 3.07
660 810 1.303074 CGCCATCCTCCCATCATGG 60.303 63.158 0.00 0.00 40.24 3.66
663 813 1.442773 CCATCCTCCCATCATGGTCT 58.557 55.000 2.07 0.00 35.17 3.85
717 867 1.811359 CCTTGCTTCCTGCTTCTTCAG 59.189 52.381 0.00 0.00 43.37 3.02
755 905 4.980805 CGTCCACCACCACCACCG 62.981 72.222 0.00 0.00 0.00 4.94
793 951 4.643387 AGTCCCTGCCGTGCCAAC 62.643 66.667 0.00 0.00 0.00 3.77
794 952 4.643387 GTCCCTGCCGTGCCAACT 62.643 66.667 0.00 0.00 0.00 3.16
823 981 2.028658 GCATCGCCATCCAGATTCTAGA 60.029 50.000 0.00 0.00 0.00 2.43
851 1010 0.391263 AAGCGTCGGATCAAACCTCC 60.391 55.000 0.00 0.00 0.00 4.30
852 1011 1.814169 GCGTCGGATCAAACCTCCC 60.814 63.158 0.00 0.00 0.00 4.30
853 1012 1.898154 CGTCGGATCAAACCTCCCT 59.102 57.895 0.00 0.00 0.00 4.20
854 1013 0.179108 CGTCGGATCAAACCTCCCTC 60.179 60.000 0.00 0.00 0.00 4.30
857 1016 2.362717 GTCGGATCAAACCTCCCTCTAG 59.637 54.545 0.00 0.00 0.00 2.43
902 1061 1.082756 CGGCGCAGTTCAAAGACAC 60.083 57.895 10.83 0.00 0.00 3.67
904 1063 0.317020 GGCGCAGTTCAAAGACACAC 60.317 55.000 10.83 0.00 0.00 3.82
908 1067 2.785679 GCAGTTCAAAGACACACACAC 58.214 47.619 0.00 0.00 0.00 3.82
910 1069 3.747193 CAGTTCAAAGACACACACACAC 58.253 45.455 0.00 0.00 0.00 3.82
912 1071 3.188460 AGTTCAAAGACACACACACACAC 59.812 43.478 0.00 0.00 0.00 3.82
914 1073 2.482336 TCAAAGACACACACACACACAC 59.518 45.455 0.00 0.00 0.00 3.82
915 1074 2.177394 AAGACACACACACACACACA 57.823 45.000 0.00 0.00 0.00 3.72
916 1075 1.438651 AGACACACACACACACACAC 58.561 50.000 0.00 0.00 0.00 3.82
917 1076 1.152510 GACACACACACACACACACA 58.847 50.000 0.00 0.00 0.00 3.72
918 1077 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
919 1078 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
920 1079 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
921 1080 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
922 1081 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
924 1083 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
925 1084 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
926 1085 1.136000 CACACACACACACACACACAG 60.136 52.381 0.00 0.00 0.00 3.66
927 1086 1.270571 ACACACACACACACACACAGA 60.271 47.619 0.00 0.00 0.00 3.41
928 1087 1.394572 CACACACACACACACACAGAG 59.605 52.381 0.00 0.00 0.00 3.35
929 1088 1.275010 ACACACACACACACACAGAGA 59.725 47.619 0.00 0.00 0.00 3.10
930 1089 1.929169 CACACACACACACACAGAGAG 59.071 52.381 0.00 0.00 0.00 3.20
931 1090 1.824852 ACACACACACACACAGAGAGA 59.175 47.619 0.00 0.00 0.00 3.10
932 1091 2.159184 ACACACACACACACAGAGAGAG 60.159 50.000 0.00 0.00 0.00 3.20
933 1092 2.099756 CACACACACACACAGAGAGAGA 59.900 50.000 0.00 0.00 0.00 3.10
934 1093 2.360483 ACACACACACACAGAGAGAGAG 59.640 50.000 0.00 0.00 0.00 3.20
935 1094 2.620585 CACACACACACAGAGAGAGAGA 59.379 50.000 0.00 0.00 0.00 3.10
937 1096 3.145286 CACACACACAGAGAGAGAGAGA 58.855 50.000 0.00 0.00 0.00 3.10
938 1097 3.189080 CACACACACAGAGAGAGAGAGAG 59.811 52.174 0.00 0.00 0.00 3.20
939 1098 3.072330 ACACACACAGAGAGAGAGAGAGA 59.928 47.826 0.00 0.00 0.00 3.10
940 1099 3.686241 CACACACAGAGAGAGAGAGAGAG 59.314 52.174 0.00 0.00 0.00 3.20
941 1100 3.582647 ACACACAGAGAGAGAGAGAGAGA 59.417 47.826 0.00 0.00 0.00 3.10
942 1101 4.186926 CACACAGAGAGAGAGAGAGAGAG 58.813 52.174 0.00 0.00 0.00 3.20
943 1102 4.081476 CACACAGAGAGAGAGAGAGAGAGA 60.081 50.000 0.00 0.00 0.00 3.10
944 1103 4.161189 ACACAGAGAGAGAGAGAGAGAGAG 59.839 50.000 0.00 0.00 0.00 3.20
945 1104 4.403752 CACAGAGAGAGAGAGAGAGAGAGA 59.596 50.000 0.00 0.00 0.00 3.10
946 1105 4.648762 ACAGAGAGAGAGAGAGAGAGAGAG 59.351 50.000 0.00 0.00 0.00 3.20
948 1107 5.009911 CAGAGAGAGAGAGAGAGAGAGAGAG 59.990 52.000 0.00 0.00 0.00 3.20
950 1109 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
951 1110 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
953 1112 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
956 1115 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
957 1116 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
958 1117 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
959 1118 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
960 1119 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
961 1120 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
962 1121 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
963 1122 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
964 1123 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
966 1125 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
967 1126 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
968 1127 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
969 1128 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
972 1131 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
973 1132 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
974 1133 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
975 1134 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
976 1135 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
977 1136 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
978 1137 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
987 1146 1.134401 AGAGAGAGAGAGAGACGCCAG 60.134 57.143 0.00 0.00 0.00 4.85
1008 1167 5.477510 CAGATAGACAGATAGATGTTGGGC 58.522 45.833 0.00 0.00 32.25 5.36
1075 1240 1.622607 TAGCCCCATGGTGTCCTTCG 61.623 60.000 11.73 0.00 0.00 3.79
1319 1493 3.942829 TGCCTACCTCTTGATTGTTCTG 58.057 45.455 0.00 0.00 0.00 3.02
1322 1496 1.813513 ACCTCTTGATTGTTCTGGCG 58.186 50.000 0.00 0.00 0.00 5.69
1329 1503 0.749454 GATTGTTCTGGCGCCCATCT 60.749 55.000 26.77 4.85 30.82 2.90
1334 1509 0.750850 TTCTGGCGCCCATCTACTAC 59.249 55.000 26.77 0.00 30.82 2.73
1341 1516 2.931320 GCGCCCATCTACTACTATTGCC 60.931 54.545 0.00 0.00 0.00 4.52
1352 1533 4.000988 ACTACTATTGCCGTTGAGTTTGG 58.999 43.478 0.00 0.00 0.00 3.28
1354 1535 1.472480 CTATTGCCGTTGAGTTTGGGG 59.528 52.381 0.00 0.00 0.00 4.96
1356 1537 4.038080 GCCGTTGAGTTTGGGGCG 62.038 66.667 0.00 0.00 33.58 6.13
1357 1538 2.281208 CCGTTGAGTTTGGGGCGA 60.281 61.111 0.00 0.00 0.00 5.54
1359 1540 2.325082 CGTTGAGTTTGGGGCGAGG 61.325 63.158 0.00 0.00 0.00 4.63
1362 1543 0.536460 TTGAGTTTGGGGCGAGGTTC 60.536 55.000 0.00 0.00 0.00 3.62
1364 1545 3.053896 GTTTGGGGCGAGGTTCGG 61.054 66.667 0.34 0.00 40.84 4.30
1382 1563 4.280436 TCGGCAGAAGAAAATAACTCCA 57.720 40.909 0.00 0.00 0.00 3.86
1383 1564 4.253685 TCGGCAGAAGAAAATAACTCCAG 58.746 43.478 0.00 0.00 0.00 3.86
1384 1565 4.020573 TCGGCAGAAGAAAATAACTCCAGA 60.021 41.667 0.00 0.00 0.00 3.86
1468 1649 3.885521 CCCCTCCGCGTACGTCTC 61.886 72.222 17.90 0.00 37.70 3.36
1469 1650 3.885521 CCCTCCGCGTACGTCTCC 61.886 72.222 17.90 0.00 37.70 3.71
1513 1699 2.597305 CGTCGGTCAAATGCACTAGTAC 59.403 50.000 0.00 0.00 0.00 2.73
1515 1701 3.858238 GTCGGTCAAATGCACTAGTACTC 59.142 47.826 0.00 0.00 0.00 2.59
1516 1702 3.508402 TCGGTCAAATGCACTAGTACTCA 59.492 43.478 0.00 0.00 0.00 3.41
1561 1753 2.378208 TCACACATGATTTTCCTCCCCA 59.622 45.455 0.00 0.00 0.00 4.96
1583 1775 8.505625 CCCCAACTCAATCAATTATTTTGTTTG 58.494 33.333 3.78 3.78 33.00 2.93
1671 1867 1.002087 GCTACATATTCGGTGGAGGGG 59.998 57.143 0.00 0.00 0.00 4.79
1681 1877 0.981943 GGTGGAGGGGTAATATCGGG 59.018 60.000 0.00 0.00 0.00 5.14
1718 1914 2.227865 ACGCCGTTTTCATGCTAACAAT 59.772 40.909 9.47 0.00 0.00 2.71
1723 1920 5.581605 CCGTTTTCATGCTAACAATGCTAT 58.418 37.500 9.47 0.00 0.00 2.97
1918 2141 1.608717 GCTTTCTCCGCCCTCTCTCA 61.609 60.000 0.00 0.00 0.00 3.27
1945 2169 4.717313 ACCGCCCGCTCCTTTTCC 62.717 66.667 0.00 0.00 0.00 3.13
1963 2192 1.296832 TCCTTCCATCCTCCCCATGTA 59.703 52.381 0.00 0.00 0.00 2.29
1970 2199 5.030147 TCCATCCTCCCCATGTATATGTAC 58.970 45.833 0.00 0.00 32.21 2.90
1981 2210 8.662141 CCCCATGTATATGTACGTATTTTTAGC 58.338 37.037 12.74 0.00 33.36 3.09
2001 2245 2.810650 CAGTAGGTGTCATTAGCCGTC 58.189 52.381 0.00 0.00 0.00 4.79
2032 2276 2.188817 ACCCTAATGACTCACCACTCC 58.811 52.381 0.00 0.00 0.00 3.85
2037 2281 1.933021 ATGACTCACCACTCCCGTAA 58.067 50.000 0.00 0.00 0.00 3.18
2051 2295 1.134491 CCCGTAACTTCTCCCCATGAC 60.134 57.143 0.00 0.00 0.00 3.06
2053 2297 1.475280 CGTAACTTCTCCCCATGACGA 59.525 52.381 0.00 0.00 0.00 4.20
2054 2298 2.100916 CGTAACTTCTCCCCATGACGAT 59.899 50.000 0.00 0.00 0.00 3.73
2055 2299 2.698855 AACTTCTCCCCATGACGATG 57.301 50.000 0.00 0.00 0.00 3.84
2058 2302 2.093447 ACTTCTCCCCATGACGATGAAC 60.093 50.000 0.00 0.00 0.00 3.18
2060 2304 1.207089 TCTCCCCATGACGATGAACAC 59.793 52.381 0.00 0.00 0.00 3.32
2061 2305 1.208052 CTCCCCATGACGATGAACACT 59.792 52.381 0.00 0.00 0.00 3.55
2062 2306 1.628340 TCCCCATGACGATGAACACTT 59.372 47.619 0.00 0.00 0.00 3.16
2067 2311 5.048364 CCCCATGACGATGAACACTTAAAAA 60.048 40.000 0.00 0.00 0.00 1.94
2094 2338 1.001860 TGATGAGTCATCACCGTTGCA 59.998 47.619 28.18 7.19 44.60 4.08
2095 2339 1.662629 GATGAGTCATCACCGTTGCAG 59.337 52.381 25.19 0.00 40.28 4.41
2098 2342 0.250467 AGTCATCACCGTTGCAGCTT 60.250 50.000 0.00 0.00 0.00 3.74
2100 2344 0.035317 TCATCACCGTTGCAGCTTCT 59.965 50.000 0.00 0.00 0.00 2.85
2102 2346 0.674895 ATCACCGTTGCAGCTTCTCC 60.675 55.000 0.00 0.00 0.00 3.71
2103 2347 2.357517 ACCGTTGCAGCTTCTCCG 60.358 61.111 0.00 0.00 0.00 4.63
2104 2348 3.793144 CCGTTGCAGCTTCTCCGC 61.793 66.667 0.00 0.00 0.00 5.54
2105 2349 4.139420 CGTTGCAGCTTCTCCGCG 62.139 66.667 0.00 0.00 34.40 6.46
2122 2366 0.798776 GCGTGATGACAAGGAAGGTG 59.201 55.000 0.00 0.00 0.00 4.00
2124 2368 2.341257 CGTGATGACAAGGAAGGTGAG 58.659 52.381 0.00 0.00 0.00 3.51
2148 2392 0.945743 TGAGTCATCACTGTGCACGC 60.946 55.000 13.13 2.48 30.63 5.34
2149 2393 1.630244 GAGTCATCACTGTGCACGCC 61.630 60.000 13.13 0.00 30.63 5.68
2188 2432 8.437575 ACTCCCGGAAGACATAACATAATTATT 58.562 33.333 0.73 0.00 0.00 1.40
2189 2433 9.938280 CTCCCGGAAGACATAACATAATTATTA 57.062 33.333 0.73 0.00 0.00 0.98
2292 2536 3.909430 TGAAACGGCTAGTAGTTCTGTG 58.091 45.455 0.00 0.00 0.00 3.66
2302 2552 0.175760 TAGTTCTGTGGCAGATCGGC 59.824 55.000 9.58 9.58 40.39 5.54
2319 2569 3.047877 CCGGCCGTTGAAGTGGTC 61.048 66.667 26.12 0.00 0.00 4.02
2320 2570 3.047877 CGGCCGTTGAAGTGGTCC 61.048 66.667 19.50 0.00 0.00 4.46
2321 2571 2.671963 GGCCGTTGAAGTGGTCCC 60.672 66.667 0.00 0.00 0.00 4.46
2323 2573 2.358247 CCGTTGAAGTGGTCCCCG 60.358 66.667 0.00 0.00 0.00 5.73
2325 2575 1.227734 CGTTGAAGTGGTCCCCGTT 60.228 57.895 0.00 0.00 0.00 4.44
2326 2576 1.226030 CGTTGAAGTGGTCCCCGTTC 61.226 60.000 0.00 0.00 0.00 3.95
2327 2577 0.887836 GTTGAAGTGGTCCCCGTTCC 60.888 60.000 0.00 0.00 0.00 3.62
2328 2578 2.059345 TTGAAGTGGTCCCCGTTCCC 62.059 60.000 0.00 0.00 0.00 3.97
2329 2579 2.122099 AAGTGGTCCCCGTTCCCT 60.122 61.111 0.00 0.00 0.00 4.20
2331 2581 2.606826 GTGGTCCCCGTTCCCTCT 60.607 66.667 0.00 0.00 0.00 3.69
2332 2582 2.206036 TGGTCCCCGTTCCCTCTT 59.794 61.111 0.00 0.00 0.00 2.85
2333 2583 2.221299 TGGTCCCCGTTCCCTCTTG 61.221 63.158 0.00 0.00 0.00 3.02
2335 2585 3.327404 TCCCCGTTCCCTCTTGCC 61.327 66.667 0.00 0.00 0.00 4.52
2336 2586 3.330720 CCCCGTTCCCTCTTGCCT 61.331 66.667 0.00 0.00 0.00 4.75
2338 2588 2.045926 CCGTTCCCTCTTGCCTGG 60.046 66.667 0.00 0.00 0.00 4.45
2339 2589 2.747855 CGTTCCCTCTTGCCTGGC 60.748 66.667 12.87 12.87 0.00 4.85
2340 2590 2.436109 GTTCCCTCTTGCCTGGCA 59.564 61.111 19.30 19.30 36.47 4.92
2341 2591 1.973812 GTTCCCTCTTGCCTGGCAC 60.974 63.158 23.30 3.04 38.71 5.01
2342 2592 2.459969 TTCCCTCTTGCCTGGCACA 61.460 57.895 23.30 10.23 38.71 4.57
2370 2658 1.434696 CATGGGCGCATGTTTCTCC 59.565 57.895 30.01 0.00 0.00 3.71
2401 2689 9.262472 GACATACAAAATCTATTTTCGTGACAC 57.738 33.333 0.00 0.00 37.86 3.67
2402 2690 8.779303 ACATACAAAATCTATTTTCGTGACACA 58.221 29.630 6.37 0.00 37.86 3.72
2413 2701 1.000607 TCGTGACACAAGTACAGGCTC 60.001 52.381 6.37 0.00 0.00 4.70
2421 2709 0.391661 AAGTACAGGCTCGCATGTGG 60.392 55.000 18.17 0.00 41.25 4.17
2551 2851 3.818787 CGCCAGGCCTGCATTCAC 61.819 66.667 28.39 10.26 0.00 3.18
2596 2896 4.109766 CCATGCAGCATAAATGTTCACAG 58.890 43.478 7.82 0.00 0.00 3.66
2618 2919 4.636206 AGCTCTTCCAACAATTAATCCGTC 59.364 41.667 0.00 0.00 0.00 4.79
2633 2934 1.395954 TCCGTCTGTCACTTACGATCG 59.604 52.381 14.88 14.88 38.89 3.69
2636 2937 3.281601 CGTCTGTCACTTACGATCGATC 58.718 50.000 24.34 15.68 38.89 3.69
2637 2938 3.242316 CGTCTGTCACTTACGATCGATCA 60.242 47.826 24.34 3.68 38.89 2.92
2651 2952 2.276201 TCGATCAACGCCGATGAATTT 58.724 42.857 0.00 0.00 42.26 1.82
2652 2953 2.030335 TCGATCAACGCCGATGAATTTG 59.970 45.455 0.00 0.00 42.26 2.32
2653 2954 2.111756 GATCAACGCCGATGAATTTGC 58.888 47.619 0.00 0.00 0.00 3.68
2657 2958 1.137194 CGCCGATGAATTTGCTGCA 59.863 52.632 0.00 0.00 0.00 4.41
2859 3163 4.796495 GTCACCATGGACCCGGCC 62.796 72.222 21.47 0.00 0.00 6.13
3083 3387 5.240403 TGCAACAACTTCATGCATGTTACTA 59.760 36.000 25.43 3.60 44.52 1.82
3084 3388 5.569059 GCAACAACTTCATGCATGTTACTAC 59.431 40.000 25.43 5.70 39.81 2.73
3085 3389 6.568462 GCAACAACTTCATGCATGTTACTACT 60.568 38.462 25.43 5.29 39.81 2.57
3093 3397 5.753438 TCATGCATGTTACTACTTTCGATCC 59.247 40.000 25.43 0.00 0.00 3.36
3094 3398 4.109766 TGCATGTTACTACTTTCGATCCG 58.890 43.478 0.00 0.00 0.00 4.18
3125 3429 8.475639 AGTTAGTTAGGATGTACATACAGTTGG 58.524 37.037 20.30 0.00 39.92 3.77
3129 3433 3.132289 AGGATGTACATACAGTTGGGACG 59.868 47.826 20.30 0.00 39.92 4.79
3140 3444 2.036733 CAGTTGGGACGAGTTGGTTAGA 59.963 50.000 0.00 0.00 0.00 2.10
3144 3448 3.028850 TGGGACGAGTTGGTTAGATAGG 58.971 50.000 0.00 0.00 0.00 2.57
3158 3462 5.349543 GGTTAGATAGGTTGGTTACGTGTTG 59.650 44.000 0.00 0.00 0.00 3.33
3190 3502 2.819595 CGTTGGATCGGTGGCTGG 60.820 66.667 0.00 0.00 0.00 4.85
3193 3505 2.220586 TTGGATCGGTGGCTGGACA 61.221 57.895 0.00 0.00 0.00 4.02
3243 3555 2.040939 TCCACAGTTTTAGTCCACCGA 58.959 47.619 0.00 0.00 0.00 4.69
3281 3593 2.092211 GCTTATCGTGTGGACTTTGACG 59.908 50.000 0.00 0.00 0.00 4.35
3326 3638 6.678878 CACGCTAAGTAGCCATTAGATTCTA 58.321 40.000 4.77 0.00 46.34 2.10
3347 3659 3.575297 GCATATGCGTCGATCATGC 57.425 52.632 12.82 2.99 37.56 4.06
3351 3663 4.519182 TGCGTCGATCATGCATGT 57.481 50.000 25.43 13.42 42.48 3.21
3352 3664 2.008328 TGCGTCGATCATGCATGTG 58.992 52.632 25.43 16.39 42.48 3.21
3353 3665 1.277739 GCGTCGATCATGCATGTGG 59.722 57.895 25.43 15.55 36.94 4.17
3354 3666 1.936658 CGTCGATCATGCATGTGGG 59.063 57.895 25.43 15.22 0.00 4.61
3355 3667 1.650912 GTCGATCATGCATGTGGGC 59.349 57.895 25.43 13.75 0.00 5.36
3356 3668 1.526686 TCGATCATGCATGTGGGCC 60.527 57.895 25.43 10.59 0.00 5.80
3357 3669 2.900167 CGATCATGCATGTGGGCCG 61.900 63.158 25.43 17.31 0.00 6.13
3358 3670 2.520020 ATCATGCATGTGGGCCGG 60.520 61.111 25.43 0.00 0.00 6.13
3447 3775 7.338800 ACAGTATAATCCATCTTGCTTTTGG 57.661 36.000 0.00 0.00 0.00 3.28
3461 3789 3.188460 TGCTTTTGGTCTTGATCGCTAAC 59.812 43.478 0.00 0.00 0.00 2.34
3463 3791 4.142600 GCTTTTGGTCTTGATCGCTAACAT 60.143 41.667 0.00 0.00 0.00 2.71
3464 3792 5.064707 GCTTTTGGTCTTGATCGCTAACATA 59.935 40.000 0.00 0.00 0.00 2.29
3465 3793 6.238484 GCTTTTGGTCTTGATCGCTAACATAT 60.238 38.462 0.00 0.00 0.00 1.78
3466 3794 6.603237 TTTGGTCTTGATCGCTAACATATG 57.397 37.500 0.00 0.00 0.00 1.78
3467 3795 4.058124 TGGTCTTGATCGCTAACATATGC 58.942 43.478 1.58 0.00 0.00 3.14
3468 3796 4.202253 TGGTCTTGATCGCTAACATATGCT 60.202 41.667 1.58 0.00 0.00 3.79
3470 3798 5.333645 GGTCTTGATCGCTAACATATGCTTG 60.334 44.000 1.58 0.00 0.00 4.01
3471 3799 4.212004 TCTTGATCGCTAACATATGCTTGC 59.788 41.667 1.58 2.34 0.00 4.01
3477 3805 4.031028 CGCTAACATATGCTTGCTCAAAC 58.969 43.478 10.14 0.00 0.00 2.93
3478 3806 4.201851 CGCTAACATATGCTTGCTCAAACT 60.202 41.667 10.14 0.00 0.00 2.66
3482 3810 4.264253 ACATATGCTTGCTCAAACTGCTA 58.736 39.130 1.58 0.00 0.00 3.49
3483 3811 4.701651 ACATATGCTTGCTCAAACTGCTAA 59.298 37.500 1.58 0.00 0.00 3.09
3485 3813 1.264020 TGCTTGCTCAAACTGCTAACG 59.736 47.619 0.00 0.00 0.00 3.18
4024 4384 0.968405 TGGTTGCCCATTCTTTCTGC 59.032 50.000 0.00 0.00 35.17 4.26
4040 4404 0.522180 CTGCTCTTCTTGCTTGCCTG 59.478 55.000 0.00 0.00 0.00 4.85
4046 4410 1.612463 CTTCTTGCTTGCCTGCTTCTT 59.388 47.619 0.00 0.00 0.00 2.52
4047 4411 1.242076 TCTTGCTTGCCTGCTTCTTC 58.758 50.000 0.00 0.00 0.00 2.87
4048 4412 1.202855 TCTTGCTTGCCTGCTTCTTCT 60.203 47.619 0.00 0.00 0.00 2.85
4237 4684 3.775654 CTGGTCCTGGCCGACTCC 61.776 72.222 10.20 5.48 33.07 3.85
4238 4685 4.316823 TGGTCCTGGCCGACTCCT 62.317 66.667 10.20 0.00 33.07 3.69
4311 4760 5.577945 CAGCACAAGTGTTGTTTTCTTGATT 59.422 36.000 8.63 0.00 43.23 2.57
4460 4977 7.928873 ACATAAGTCTCATTTTTAAGGGAGGA 58.071 34.615 0.00 0.00 0.00 3.71
4461 4978 8.049721 ACATAAGTCTCATTTTTAAGGGAGGAG 58.950 37.037 0.00 0.00 0.00 3.69
4462 4979 5.443230 AGTCTCATTTTTAAGGGAGGAGG 57.557 43.478 0.00 0.00 0.00 4.30
4463 4980 4.852697 AGTCTCATTTTTAAGGGAGGAGGT 59.147 41.667 0.00 0.00 0.00 3.85
4464 4981 6.030082 AGTCTCATTTTTAAGGGAGGAGGTA 58.970 40.000 0.00 0.00 0.00 3.08
4465 4982 6.504279 AGTCTCATTTTTAAGGGAGGAGGTAA 59.496 38.462 0.00 0.00 0.00 2.85
4466 4983 7.184753 AGTCTCATTTTTAAGGGAGGAGGTAAT 59.815 37.037 0.00 0.00 0.00 1.89
4473 4990 9.483489 TTTTTAAGGGAGGAGGTAATAAAATCC 57.517 33.333 0.00 0.00 0.00 3.01
4476 4993 5.297799 AGGGAGGAGGTAATAAAATCCAGT 58.702 41.667 0.00 0.00 34.08 4.00
4493 5010 4.582869 TCCAGTCTCACAGAATTCCAATG 58.417 43.478 0.65 0.00 0.00 2.82
4503 5020 4.706962 ACAGAATTCCAATGGGCTAGTTTC 59.293 41.667 0.65 0.00 0.00 2.78
4508 5032 6.686484 ATTCCAATGGGCTAGTTTCTTTTT 57.314 33.333 0.00 0.00 0.00 1.94
4548 5072 3.258123 AGCAAACATCACGGCCTTTATTT 59.742 39.130 0.00 0.00 0.00 1.40
4562 5086 6.644592 CGGCCTTTATTTTTCAAGAATGTTCA 59.355 34.615 0.00 0.00 0.00 3.18
4572 5096 6.385649 TTCAAGAATGTTCAAGGGTACAAC 57.614 37.500 0.00 0.00 0.00 3.32
4576 5100 6.144078 AGAATGTTCAAGGGTACAACAAAC 57.856 37.500 0.00 0.00 33.84 2.93
4578 5102 3.345414 TGTTCAAGGGTACAACAAACGT 58.655 40.909 0.00 0.00 0.00 3.99
4581 5105 2.937799 TCAAGGGTACAACAAACGTGTC 59.062 45.455 0.00 0.00 36.80 3.67
4598 5122 1.329256 GTCGAATGGGCTAGCTAGGA 58.671 55.000 22.10 6.23 0.00 2.94
4601 5125 1.412710 CGAATGGGCTAGCTAGGACAA 59.587 52.381 22.10 0.00 0.00 3.18
4615 5139 4.321230 GCTAGGACAAGAACATGTTTTGGG 60.321 45.833 24.41 14.69 32.57 4.12
4624 5148 7.093509 ACAAGAACATGTTTTGGGTCTTAAACT 60.094 33.333 24.41 9.07 34.08 2.66
4652 5176 1.750193 AATGGGCCACAAGTATCGTG 58.250 50.000 9.28 0.00 0.00 4.35
4655 5179 0.177141 GGGCCACAAGTATCGTGCTA 59.823 55.000 4.39 0.00 32.85 3.49
4669 5193 7.210174 AGTATCGTGCTATGTGTATGACAAAT 58.790 34.615 0.00 0.00 38.36 2.32
4670 5194 5.717038 TCGTGCTATGTGTATGACAAATG 57.283 39.130 0.00 0.00 38.36 2.32
4672 5196 5.519927 TCGTGCTATGTGTATGACAAATGAG 59.480 40.000 0.00 0.00 38.36 2.90
4703 5227 1.888512 TGTTTGGCAGAAGAATCAGGC 59.111 47.619 0.00 0.00 38.02 4.85
4704 5228 1.203287 GTTTGGCAGAAGAATCAGGCC 59.797 52.381 0.00 0.00 44.25 5.19
4705 5229 0.700564 TTGGCAGAAGAATCAGGCCT 59.299 50.000 0.00 0.00 44.29 5.19
4706 5230 0.034767 TGGCAGAAGAATCAGGCCTG 60.035 55.000 27.87 27.87 44.29 4.85
4707 5231 1.382692 GGCAGAAGAATCAGGCCTGC 61.383 60.000 28.91 14.44 46.71 4.85
4709 5233 1.954258 GCAGAAGAATCAGGCCTGCTT 60.954 52.381 28.91 25.13 44.75 3.91
4710 5234 1.743958 CAGAAGAATCAGGCCTGCTTG 59.256 52.381 28.91 9.38 0.00 4.01
4711 5235 1.101331 GAAGAATCAGGCCTGCTTGG 58.899 55.000 28.91 3.92 39.35 3.61
4738 5262 1.967319 TCCAGCGCAACTCTTTTTCT 58.033 45.000 11.47 0.00 0.00 2.52
4799 5333 1.815003 CCTTTTGGAGCTAGGCACAAG 59.185 52.381 0.00 0.00 44.07 3.16
4800 5334 2.508526 CTTTTGGAGCTAGGCACAAGT 58.491 47.619 0.00 0.00 31.70 3.16
4803 5337 1.352083 TGGAGCTAGGCACAAGTTCT 58.648 50.000 0.00 0.00 0.00 3.01
4807 5341 3.604582 GAGCTAGGCACAAGTTCTCATT 58.395 45.455 0.00 0.00 0.00 2.57
4808 5342 3.341823 AGCTAGGCACAAGTTCTCATTG 58.658 45.455 0.00 0.00 0.00 2.82
4812 5346 4.778534 AGGCACAAGTTCTCATTGATTG 57.221 40.909 0.00 0.00 0.00 2.67
4839 5373 7.431084 GTGTCTTTGCTCTTATTTTCGTCAAAA 59.569 33.333 0.00 0.00 35.92 2.44
4846 5380 7.040755 TGCTCTTATTTTCGTCAAAATTGGAGA 60.041 33.333 17.80 11.36 41.56 3.71
4867 5401 5.301555 AGAGAAGAAGAGTGTTGTTTAGGC 58.698 41.667 0.00 0.00 0.00 3.93
4868 5402 5.071115 AGAGAAGAAGAGTGTTGTTTAGGCT 59.929 40.000 0.00 0.00 0.00 4.58
4878 5669 2.185004 TGTTTAGGCTGTGGCTCTTC 57.815 50.000 0.00 0.00 39.70 2.87
4880 5671 1.064003 TTTAGGCTGTGGCTCTTCCA 58.936 50.000 0.00 0.00 44.18 3.53
4904 5695 7.250569 CACATTGAAGGTTTGGTGATACATAC 58.749 38.462 0.00 0.00 0.00 2.39
4909 5702 2.512476 GGTTTGGTGATACATACCCCCT 59.488 50.000 0.00 0.00 36.74 4.79
4912 5705 0.974383 GGTGATACATACCCCCTCGG 59.026 60.000 0.00 0.00 37.81 4.63
4943 5736 3.120923 GCATGAACAAAAGCACAAATCCG 60.121 43.478 0.00 0.00 0.00 4.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 40 3.438781 GCAAAAGGATTATGTCGTGGTGA 59.561 43.478 0.00 0.00 0.00 4.02
96 97 3.570822 ATTAACACCCGGCCGGCAA 62.571 57.895 39.46 24.24 33.26 4.52
99 100 2.893404 CGATTAACACCCGGCCGG 60.893 66.667 37.99 37.99 37.81 6.13
101 102 2.757056 GCACGATTAACACCCGGCC 61.757 63.158 0.00 0.00 0.00 6.13
168 169 1.761784 TCCTTTGTGGCTTTGTGCAAT 59.238 42.857 0.00 0.00 45.15 3.56
176 177 1.494721 TCTGGACTTCCTTTGTGGCTT 59.505 47.619 0.00 0.00 36.82 4.35
178 179 1.072331 TCTCTGGACTTCCTTTGTGGC 59.928 52.381 0.00 0.00 36.82 5.01
179 180 2.772287 GTCTCTGGACTTCCTTTGTGG 58.228 52.381 0.00 0.00 39.24 4.17
180 181 2.224066 ACGTCTCTGGACTTCCTTTGTG 60.224 50.000 0.00 0.00 40.10 3.33
182 183 2.802816 CAACGTCTCTGGACTTCCTTTG 59.197 50.000 0.00 0.00 40.10 2.77
183 184 2.807108 GCAACGTCTCTGGACTTCCTTT 60.807 50.000 0.00 0.00 40.10 3.11
186 187 1.009389 CGCAACGTCTCTGGACTTCC 61.009 60.000 0.00 0.00 40.10 3.46
188 189 1.006102 CCGCAACGTCTCTGGACTT 60.006 57.895 0.00 0.00 40.10 3.01
227 233 3.556999 TGTTGTCCTCTAGCTAGCCTAG 58.443 50.000 16.35 12.32 44.09 3.02
229 235 2.383855 CTGTTGTCCTCTAGCTAGCCT 58.616 52.381 16.35 1.20 0.00 4.58
230 236 1.202475 GCTGTTGTCCTCTAGCTAGCC 60.202 57.143 16.35 4.48 33.53 3.93
231 237 1.478510 TGCTGTTGTCCTCTAGCTAGC 59.521 52.381 16.35 6.62 37.10 3.42
232 238 3.020274 TCTGCTGTTGTCCTCTAGCTAG 58.980 50.000 15.01 15.01 37.10 3.42
233 239 3.020274 CTCTGCTGTTGTCCTCTAGCTA 58.980 50.000 0.00 0.00 37.10 3.32
235 241 1.738700 GCTCTGCTGTTGTCCTCTAGC 60.739 57.143 0.00 0.00 36.72 3.42
247 253 1.745864 CCCTGCTCTTGCTCTGCTG 60.746 63.158 0.00 0.00 40.48 4.41
430 441 2.558359 CCCCATCGCTTTGAAAGTCTTT 59.442 45.455 6.81 0.00 0.00 2.52
498 515 1.605710 GCTGCTCTCAACAGAAAGCAA 59.394 47.619 0.00 0.00 37.93 3.91
500 517 1.069364 GTGCTGCTCTCAACAGAAAGC 60.069 52.381 0.00 0.00 38.27 3.51
510 527 0.305922 GTGTGTTGTGTGCTGCTCTC 59.694 55.000 0.00 0.00 0.00 3.20
511 528 1.431488 CGTGTGTTGTGTGCTGCTCT 61.431 55.000 0.00 0.00 0.00 4.09
512 529 1.010797 CGTGTGTTGTGTGCTGCTC 60.011 57.895 0.00 0.00 0.00 4.26
513 530 3.101209 CGTGTGTTGTGTGCTGCT 58.899 55.556 0.00 0.00 0.00 4.24
514 531 2.651863 GCGTGTGTTGTGTGCTGC 60.652 61.111 0.00 0.00 0.00 5.25
516 533 1.431488 CTCTGCGTGTGTTGTGTGCT 61.431 55.000 0.00 0.00 0.00 4.40
517 534 1.010797 CTCTGCGTGTGTTGTGTGC 60.011 57.895 0.00 0.00 0.00 4.57
540 671 4.287326 TGGTGTCTGTCTTCTCTCTCTCTA 59.713 45.833 0.00 0.00 0.00 2.43
544 675 2.230266 GGTGGTGTCTGTCTTCTCTCTC 59.770 54.545 0.00 0.00 0.00 3.20
545 676 2.243810 GGTGGTGTCTGTCTTCTCTCT 58.756 52.381 0.00 0.00 0.00 3.10
546 677 1.068194 CGGTGGTGTCTGTCTTCTCTC 60.068 57.143 0.00 0.00 0.00 3.20
547 678 0.962489 CGGTGGTGTCTGTCTTCTCT 59.038 55.000 0.00 0.00 0.00 3.10
588 719 3.535561 ACTTATTCCCACTGATTGAGCG 58.464 45.455 0.00 0.00 0.00 5.03
655 805 4.500125 GGGGGAGGAAGACCATGA 57.500 61.111 0.00 0.00 38.94 3.07
717 867 3.518068 CGGGCGGGGAATTGAAGC 61.518 66.667 0.00 0.00 0.00 3.86
755 905 0.106521 GATGCCTCTCTCTCTTGGGC 59.893 60.000 0.00 0.00 42.73 5.36
809 967 1.688735 TGCGGGTCTAGAATCTGGATG 59.311 52.381 0.00 0.00 0.00 3.51
813 971 0.461548 TGCTGCGGGTCTAGAATCTG 59.538 55.000 0.00 0.00 0.00 2.90
836 994 1.196012 AGAGGGAGGTTTGATCCGAC 58.804 55.000 0.00 0.00 37.75 4.79
852 1011 5.010617 GGAGAGCCCTCTTGAAATACTAGAG 59.989 48.000 0.00 0.00 44.10 2.43
853 1012 4.896482 GGAGAGCCCTCTTGAAATACTAGA 59.104 45.833 0.00 0.00 40.61 2.43
854 1013 4.898861 AGGAGAGCCCTCTTGAAATACTAG 59.101 45.833 0.00 0.00 43.31 2.57
886 1045 0.376852 TGTGTGTCTTTGAACTGCGC 59.623 50.000 0.00 0.00 0.00 6.09
894 1053 2.225255 TGTGTGTGTGTGTGTGTCTTTG 59.775 45.455 0.00 0.00 0.00 2.77
902 1061 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
904 1063 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
908 1067 1.394572 CTCTGTGTGTGTGTGTGTGTG 59.605 52.381 0.00 0.00 0.00 3.82
910 1069 1.929169 CTCTCTGTGTGTGTGTGTGTG 59.071 52.381 0.00 0.00 0.00 3.82
912 1071 2.099756 TCTCTCTCTGTGTGTGTGTGTG 59.900 50.000 0.00 0.00 0.00 3.82
914 1073 2.620585 TCTCTCTCTCTGTGTGTGTGTG 59.379 50.000 0.00 0.00 0.00 3.82
915 1074 2.884012 CTCTCTCTCTCTGTGTGTGTGT 59.116 50.000 0.00 0.00 0.00 3.72
916 1075 3.145286 TCTCTCTCTCTCTGTGTGTGTG 58.855 50.000 0.00 0.00 0.00 3.82
917 1076 3.072330 TCTCTCTCTCTCTCTGTGTGTGT 59.928 47.826 0.00 0.00 0.00 3.72
918 1077 3.673902 TCTCTCTCTCTCTCTGTGTGTG 58.326 50.000 0.00 0.00 0.00 3.82
919 1078 3.582647 TCTCTCTCTCTCTCTCTGTGTGT 59.417 47.826 0.00 0.00 0.00 3.72
920 1079 4.081476 TCTCTCTCTCTCTCTCTCTGTGTG 60.081 50.000 0.00 0.00 0.00 3.82
921 1080 4.096681 TCTCTCTCTCTCTCTCTCTGTGT 58.903 47.826 0.00 0.00 0.00 3.72
922 1081 4.403752 TCTCTCTCTCTCTCTCTCTCTGTG 59.596 50.000 0.00 0.00 0.00 3.66
924 1083 4.892345 TCTCTCTCTCTCTCTCTCTCTCTG 59.108 50.000 0.00 0.00 0.00 3.35
925 1084 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
926 1085 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
927 1086 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
928 1087 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
929 1088 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
930 1089 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
931 1090 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
932 1091 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
933 1092 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
934 1093 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
935 1094 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
937 1096 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
938 1097 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
939 1098 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
940 1099 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
941 1100 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
942 1101 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
943 1102 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
944 1103 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
945 1104 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
946 1105 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
948 1107 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
950 1109 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
951 1110 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
953 1112 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
956 1115 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
957 1116 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
958 1117 5.009610 GTCTCTCTCTCTCTCTCTCTCTCTC 59.990 52.000 0.00 0.00 0.00 3.20
959 1118 4.892934 GTCTCTCTCTCTCTCTCTCTCTCT 59.107 50.000 0.00 0.00 0.00 3.10
960 1119 4.261405 CGTCTCTCTCTCTCTCTCTCTCTC 60.261 54.167 0.00 0.00 0.00 3.20
961 1120 3.634448 CGTCTCTCTCTCTCTCTCTCTCT 59.366 52.174 0.00 0.00 0.00 3.10
962 1121 3.797184 GCGTCTCTCTCTCTCTCTCTCTC 60.797 56.522 0.00 0.00 0.00 3.20
963 1122 2.101582 GCGTCTCTCTCTCTCTCTCTCT 59.898 54.545 0.00 0.00 0.00 3.10
964 1123 2.474816 GCGTCTCTCTCTCTCTCTCTC 58.525 57.143 0.00 0.00 0.00 3.20
966 1125 1.134521 TGGCGTCTCTCTCTCTCTCTC 60.135 57.143 0.00 0.00 0.00 3.20
967 1126 0.908910 TGGCGTCTCTCTCTCTCTCT 59.091 55.000 0.00 0.00 0.00 3.10
968 1127 1.134521 TCTGGCGTCTCTCTCTCTCTC 60.135 57.143 0.00 0.00 0.00 3.20
969 1128 0.908910 TCTGGCGTCTCTCTCTCTCT 59.091 55.000 0.00 0.00 0.00 3.10
972 1131 2.806244 GTCTATCTGGCGTCTCTCTCTC 59.194 54.545 0.00 0.00 0.00 3.20
973 1132 2.171659 TGTCTATCTGGCGTCTCTCTCT 59.828 50.000 0.00 0.00 0.00 3.10
974 1133 2.548057 CTGTCTATCTGGCGTCTCTCTC 59.452 54.545 0.00 0.00 0.00 3.20
975 1134 2.171659 TCTGTCTATCTGGCGTCTCTCT 59.828 50.000 0.00 0.00 0.00 3.10
976 1135 2.566913 TCTGTCTATCTGGCGTCTCTC 58.433 52.381 0.00 0.00 0.00 3.20
977 1136 2.719531 TCTGTCTATCTGGCGTCTCT 57.280 50.000 0.00 0.00 0.00 3.10
978 1137 4.320023 TCTATCTGTCTATCTGGCGTCTC 58.680 47.826 0.00 0.00 0.00 3.36
987 1146 4.489810 CGCCCAACATCTATCTGTCTATC 58.510 47.826 0.00 0.00 0.00 2.08
1008 1167 2.181525 CCCTTCATTTTGCCGCCG 59.818 61.111 0.00 0.00 0.00 6.46
1017 1176 1.555477 TAACCGCGTCCCCCTTCATT 61.555 55.000 4.92 0.00 0.00 2.57
1052 1217 1.109323 GGACACCATGGGGCTAATGC 61.109 60.000 15.93 0.00 37.90 3.56
1319 1493 2.931320 GCAATAGTAGTAGATGGGCGCC 60.931 54.545 21.18 21.18 0.00 6.53
1322 1496 2.299297 ACGGCAATAGTAGTAGATGGGC 59.701 50.000 0.00 0.00 0.00 5.36
1329 1503 5.172934 CCAAACTCAACGGCAATAGTAGTA 58.827 41.667 0.00 0.00 0.00 1.82
1334 1509 1.472480 CCCCAAACTCAACGGCAATAG 59.528 52.381 0.00 0.00 0.00 1.73
1341 1516 2.325082 CCTCGCCCCAAACTCAACG 61.325 63.158 0.00 0.00 0.00 4.10
1352 1533 4.388499 TTCTGCCGAACCTCGCCC 62.388 66.667 0.00 0.00 38.82 6.13
1354 1535 0.949105 TTTCTTCTGCCGAACCTCGC 60.949 55.000 0.00 0.00 38.82 5.03
1356 1537 4.695928 AGTTATTTTCTTCTGCCGAACCTC 59.304 41.667 0.00 0.00 0.00 3.85
1357 1538 4.652822 AGTTATTTTCTTCTGCCGAACCT 58.347 39.130 0.00 0.00 0.00 3.50
1359 1540 4.454504 TGGAGTTATTTTCTTCTGCCGAAC 59.545 41.667 0.00 0.00 0.00 3.95
1362 1543 4.253685 TCTGGAGTTATTTTCTTCTGCCG 58.746 43.478 0.00 0.00 0.00 5.69
1364 1545 7.622893 AATCTCTGGAGTTATTTTCTTCTGC 57.377 36.000 0.00 0.00 0.00 4.26
1437 1618 3.814676 GCGGAGGGGAGAAGTATGATCTA 60.815 52.174 0.00 0.00 0.00 1.98
1440 1621 1.343069 GCGGAGGGGAGAAGTATGAT 58.657 55.000 0.00 0.00 0.00 2.45
1441 1622 1.107538 CGCGGAGGGGAGAAGTATGA 61.108 60.000 0.00 0.00 36.55 2.15
1442 1623 1.364171 CGCGGAGGGGAGAAGTATG 59.636 63.158 0.00 0.00 36.55 2.39
1495 1681 3.845178 TGAGTACTAGTGCATTTGACCG 58.155 45.455 13.75 0.00 0.00 4.79
1513 1699 8.632906 AATGGAAAATATCTTGAGCCTATGAG 57.367 34.615 0.00 0.00 0.00 2.90
1515 1701 9.688592 GAAAATGGAAAATATCTTGAGCCTATG 57.311 33.333 0.00 0.00 0.00 2.23
1516 1702 9.425248 TGAAAATGGAAAATATCTTGAGCCTAT 57.575 29.630 0.00 0.00 0.00 2.57
1583 1775 6.194796 TGTGCCTTTCTAGTAATTTGATGC 57.805 37.500 0.00 0.00 0.00 3.91
1645 1837 5.886474 CCTCCACCGAATATGTAGCTATAGA 59.114 44.000 3.21 0.00 0.00 1.98
1671 1867 8.416329 TCTCTGGTTTTTAGTACCCGATATTAC 58.584 37.037 0.00 0.00 34.66 1.89
1681 1877 2.665052 CGGCGTCTCTGGTTTTTAGTAC 59.335 50.000 0.00 0.00 0.00 2.73
1718 1914 9.988815 GAGGATTCTCTTCTGTTAATAATAGCA 57.011 33.333 0.00 0.00 37.07 3.49
1918 2141 4.636435 CGGGCGGTTGTTGGAGGT 62.636 66.667 0.00 0.00 0.00 3.85
1945 2169 4.537688 ACATATACATGGGGAGGATGGAAG 59.462 45.833 0.00 0.00 36.39 3.46
1963 2192 9.472361 CACCTACTGCTAAAAATACGTACATAT 57.528 33.333 0.00 0.00 0.00 1.78
1970 2199 6.903883 ATGACACCTACTGCTAAAAATACG 57.096 37.500 0.00 0.00 0.00 3.06
1981 2210 2.794981 CGACGGCTAATGACACCTACTG 60.795 54.545 0.00 0.00 0.00 2.74
2001 2245 4.389374 AGTCATTAGGGTTGATAATGGCG 58.611 43.478 5.05 0.00 45.54 5.69
2032 2276 1.470979 CGTCATGGGGAGAAGTTACGG 60.471 57.143 0.00 0.00 0.00 4.02
2037 2281 1.866015 TCATCGTCATGGGGAGAAGT 58.134 50.000 0.00 0.00 0.00 3.01
2074 2318 1.001860 TGCAACGGTGATGACTCATCA 59.998 47.619 16.44 16.44 46.84 3.07
2075 2319 1.662629 CTGCAACGGTGATGACTCATC 59.337 52.381 3.55 11.59 40.88 2.92
2077 2321 0.950555 GCTGCAACGGTGATGACTCA 60.951 55.000 3.55 0.00 0.00 3.41
2080 2324 0.166814 GAAGCTGCAACGGTGATGAC 59.833 55.000 3.55 0.00 0.00 3.06
2082 2326 0.445436 GAGAAGCTGCAACGGTGATG 59.555 55.000 3.55 0.00 0.00 3.07
2083 2327 0.674895 GGAGAAGCTGCAACGGTGAT 60.675 55.000 3.55 0.00 0.00 3.06
2085 2329 2.671177 CGGAGAAGCTGCAACGGTG 61.671 63.158 1.02 0.00 0.00 4.94
2092 2336 2.510238 ATCACGCGGAGAAGCTGC 60.510 61.111 12.47 0.00 45.70 5.25
2094 2338 1.153745 GTCATCACGCGGAGAAGCT 60.154 57.895 12.47 0.00 34.40 3.74
2095 2339 1.014044 TTGTCATCACGCGGAGAAGC 61.014 55.000 12.47 3.68 0.00 3.86
2098 2342 1.215382 CCTTGTCATCACGCGGAGA 59.785 57.895 12.47 8.77 0.00 3.71
2100 2344 0.389817 CTTCCTTGTCATCACGCGGA 60.390 55.000 12.47 5.24 0.00 5.54
2102 2346 0.670546 ACCTTCCTTGTCATCACGCG 60.671 55.000 3.53 3.53 0.00 6.01
2103 2347 0.798776 CACCTTCCTTGTCATCACGC 59.201 55.000 0.00 0.00 0.00 5.34
2104 2348 2.289072 ACTCACCTTCCTTGTCATCACG 60.289 50.000 0.00 0.00 0.00 4.35
2105 2349 3.409026 ACTCACCTTCCTTGTCATCAC 57.591 47.619 0.00 0.00 0.00 3.06
2122 2366 3.862267 GCACAGTGATGACTCATGTACTC 59.138 47.826 4.15 0.00 32.98 2.59
2124 2368 3.369147 GTGCACAGTGATGACTCATGTAC 59.631 47.826 13.17 0.19 32.98 2.90
2248 2492 2.877582 CACGTGTACGGCTACGGC 60.878 66.667 7.58 0.00 46.48 5.68
2249 2493 2.202518 CCACGTGTACGGCTACGG 60.203 66.667 15.65 0.00 46.48 4.02
2250 2494 2.877582 GCCACGTGTACGGCTACG 60.878 66.667 15.65 2.40 45.29 3.51
2251 2495 2.877582 CGCCACGTGTACGGCTAC 60.878 66.667 15.65 0.00 46.62 3.58
2252 2496 3.326889 GACGCCACGTGTACGGCTA 62.327 63.158 25.69 0.00 46.62 3.93
2302 2552 3.047877 GACCACTTCAACGGCCGG 61.048 66.667 31.76 13.23 0.00 6.13
2319 2569 3.330720 AGGCAAGAGGGAACGGGG 61.331 66.667 0.00 0.00 0.00 5.73
2320 2570 2.045926 CAGGCAAGAGGGAACGGG 60.046 66.667 0.00 0.00 0.00 5.28
2321 2571 2.045926 CCAGGCAAGAGGGAACGG 60.046 66.667 0.00 0.00 0.00 4.44
2323 2573 1.973812 GTGCCAGGCAAGAGGGAAC 60.974 63.158 18.28 0.00 41.47 3.62
2325 2575 2.853542 TGTGCCAGGCAAGAGGGA 60.854 61.111 18.28 0.00 41.47 4.20
2326 2576 2.360852 CTGTGCCAGGCAAGAGGG 60.361 66.667 18.28 0.63 41.47 4.30
2327 2577 3.060615 GCTGTGCCAGGCAAGAGG 61.061 66.667 18.28 7.75 41.47 3.69
2328 2578 2.281970 TGCTGTGCCAGGCAAGAG 60.282 61.111 18.28 16.32 41.47 2.85
2329 2579 2.595463 GTGCTGTGCCAGGCAAGA 60.595 61.111 18.28 4.78 41.47 3.02
2331 2581 4.208403 AGGTGCTGTGCCAGGCAA 62.208 61.111 18.28 5.90 41.47 4.52
2332 2582 4.648626 GAGGTGCTGTGCCAGGCA 62.649 66.667 11.22 11.22 35.60 4.75
2338 2588 3.807538 CATGCCGAGGTGCTGTGC 61.808 66.667 0.00 0.00 0.00 4.57
2339 2589 3.129502 CCATGCCGAGGTGCTGTG 61.130 66.667 0.00 0.00 0.00 3.66
2340 2590 4.415150 CCCATGCCGAGGTGCTGT 62.415 66.667 0.00 0.00 0.00 4.40
2358 2640 1.338105 TGTCAGAGGGAGAAACATGCG 60.338 52.381 0.00 0.00 0.00 4.73
2365 2647 6.627087 AGATTTTGTATGTCAGAGGGAGAA 57.373 37.500 0.00 0.00 0.00 2.87
2370 2658 8.883731 ACGAAAATAGATTTTGTATGTCAGAGG 58.116 33.333 4.98 0.00 42.63 3.69
2401 2689 0.723414 CACATGCGAGCCTGTACTTG 59.277 55.000 5.73 0.00 0.00 3.16
2402 2690 0.391661 CCACATGCGAGCCTGTACTT 60.392 55.000 5.73 0.00 0.00 2.24
2413 2701 1.232621 ATGATCGATGGCCACATGCG 61.233 55.000 8.16 10.42 42.61 4.73
2421 2709 1.071605 GCGACCTAATGATCGATGGC 58.928 55.000 0.54 0.00 40.86 4.40
2488 2779 9.613428 AAGCTAGCACATTAATCTTGTATTGTA 57.387 29.630 18.83 0.00 0.00 2.41
2492 2789 8.778358 GCTTAAGCTAGCACATTAATCTTGTAT 58.222 33.333 20.38 0.00 40.89 2.29
2536 2836 1.888018 CAAGTGAATGCAGGCCTGG 59.112 57.895 33.46 15.81 0.00 4.45
2568 2868 1.378531 TTTATGCTGCATGGACGGAC 58.621 50.000 24.59 0.00 0.00 4.79
2571 2871 3.181498 TGAACATTTATGCTGCATGGACG 60.181 43.478 24.59 12.76 0.00 4.79
2596 2896 4.636206 AGACGGATTAATTGTTGGAAGAGC 59.364 41.667 0.00 0.00 0.00 4.09
2618 2919 3.478874 CGTTGATCGATCGTAAGTGACAG 59.521 47.826 20.03 0.00 42.86 3.51
2633 2934 2.111756 GCAAATTCATCGGCGTTGATC 58.888 47.619 20.05 5.51 0.00 2.92
2636 2937 1.261989 CAGCAAATTCATCGGCGTTG 58.738 50.000 11.58 11.58 0.00 4.10
2637 2938 0.456653 GCAGCAAATTCATCGGCGTT 60.457 50.000 6.85 0.00 0.00 4.84
2898 3202 1.005394 GCCGGTCGTCCTCAGAAAA 60.005 57.895 1.90 0.00 0.00 2.29
3083 3387 0.034896 AACTGCCACGGATCGAAAGT 59.965 50.000 0.00 0.00 0.00 2.66
3084 3388 1.927174 CTAACTGCCACGGATCGAAAG 59.073 52.381 0.00 0.00 0.00 2.62
3085 3389 1.274167 ACTAACTGCCACGGATCGAAA 59.726 47.619 0.00 0.00 0.00 3.46
3093 3397 3.247006 ACATCCTAACTAACTGCCACG 57.753 47.619 0.00 0.00 0.00 4.94
3094 3398 5.080969 TGTACATCCTAACTAACTGCCAC 57.919 43.478 0.00 0.00 0.00 5.01
3125 3429 4.430908 CAACCTATCTAACCAACTCGTCC 58.569 47.826 0.00 0.00 0.00 4.79
3129 3433 5.809051 CGTAACCAACCTATCTAACCAACTC 59.191 44.000 0.00 0.00 0.00 3.01
3140 3444 3.775261 ACCAACACGTAACCAACCTAT 57.225 42.857 0.00 0.00 0.00 2.57
3144 3448 1.744522 ACCAACCAACACGTAACCAAC 59.255 47.619 0.00 0.00 0.00 3.77
3190 3502 3.047877 CGACCGGCCAAACCTGTC 61.048 66.667 0.00 0.00 46.33 3.51
3243 3555 1.908483 GCAGTAGCTTAGCCCACCT 59.092 57.895 0.00 0.00 37.91 4.00
3281 3593 2.603892 GCAACATGCATCGATCACCATC 60.604 50.000 0.00 0.00 44.26 3.51
3309 3621 3.895656 TGCGGTAGAATCTAATGGCTACT 59.104 43.478 0.00 0.00 34.95 2.57
3337 3649 1.650912 GCCCACATGCATGATCGAC 59.349 57.895 32.75 13.68 0.00 4.20
3360 3672 4.324991 ACAAGTTCCCGACCGGCC 62.325 66.667 0.00 0.00 0.00 6.13
3361 3673 3.047877 CACAAGTTCCCGACCGGC 61.048 66.667 0.00 0.00 0.00 6.13
3362 3674 2.358247 CCACAAGTTCCCGACCGG 60.358 66.667 0.00 0.00 0.00 5.28
3363 3675 0.816421 AAACCACAAGTTCCCGACCG 60.816 55.000 0.00 0.00 37.88 4.79
3364 3676 0.666374 CAAACCACAAGTTCCCGACC 59.334 55.000 0.00 0.00 37.88 4.79
3365 3677 1.332686 GACAAACCACAAGTTCCCGAC 59.667 52.381 0.00 0.00 37.88 4.79
3366 3678 1.210967 AGACAAACCACAAGTTCCCGA 59.789 47.619 0.00 0.00 37.88 5.14
3367 3679 1.602377 GAGACAAACCACAAGTTCCCG 59.398 52.381 0.00 0.00 37.88 5.14
3368 3680 1.602377 CGAGACAAACCACAAGTTCCC 59.398 52.381 0.00 0.00 37.88 3.97
3447 3775 5.674008 CAAGCATATGTTAGCGATCAAGAC 58.326 41.667 4.29 0.00 35.48 3.01
3461 3789 3.777465 AGCAGTTTGAGCAAGCATATG 57.223 42.857 0.00 0.00 0.00 1.78
3463 3791 3.125146 CGTTAGCAGTTTGAGCAAGCATA 59.875 43.478 0.00 0.00 0.00 3.14
3464 3792 2.095567 CGTTAGCAGTTTGAGCAAGCAT 60.096 45.455 0.00 0.00 0.00 3.79
3465 3793 1.264020 CGTTAGCAGTTTGAGCAAGCA 59.736 47.619 0.00 0.00 0.00 3.91
3466 3794 1.531149 TCGTTAGCAGTTTGAGCAAGC 59.469 47.619 0.00 0.00 0.00 4.01
3467 3795 3.740590 CATCGTTAGCAGTTTGAGCAAG 58.259 45.455 0.00 0.00 0.00 4.01
3468 3796 2.095768 GCATCGTTAGCAGTTTGAGCAA 60.096 45.455 0.00 0.00 0.00 3.91
3470 3798 1.464608 TGCATCGTTAGCAGTTTGAGC 59.535 47.619 0.00 0.00 37.02 4.26
3478 3806 0.735978 CACGTCCTGCATCGTTAGCA 60.736 55.000 8.57 0.00 38.23 3.49
3482 3810 1.374252 GTCCACGTCCTGCATCGTT 60.374 57.895 8.57 0.00 38.23 3.85
3483 3811 2.261671 GTCCACGTCCTGCATCGT 59.738 61.111 6.03 6.03 40.99 3.73
3866 4194 3.181479 CCAGCACATTCCTCAAATCATGG 60.181 47.826 0.00 0.00 0.00 3.66
3923 4251 4.344865 TTGCCGGCCCTCTTGTCC 62.345 66.667 26.77 0.00 0.00 4.02
4024 4384 1.199558 GAAGCAGGCAAGCAAGAAGAG 59.800 52.381 4.78 0.00 36.85 2.85
4040 4404 3.305398 TCTCTTTCCACGAGAAGAAGC 57.695 47.619 0.00 0.00 34.77 3.86
4046 4410 2.103373 CCTCCATCTCTTTCCACGAGA 58.897 52.381 0.00 0.00 41.36 4.04
4047 4411 1.137872 CCCTCCATCTCTTTCCACGAG 59.862 57.143 0.00 0.00 0.00 4.18
4048 4412 1.195115 CCCTCCATCTCTTTCCACGA 58.805 55.000 0.00 0.00 0.00 4.35
4061 4425 1.004758 CCCCTCTCAATCCCCTCCA 59.995 63.158 0.00 0.00 0.00 3.86
4165 4612 8.936787 ACTGGAGTACTACTACTCTGTGTATAT 58.063 37.037 6.66 0.00 45.90 0.86
4166 4613 8.316497 ACTGGAGTACTACTACTCTGTGTATA 57.684 38.462 6.66 0.00 45.90 1.47
4237 4684 5.684704 TCATCTTTAATTACAGGCCAGGAG 58.315 41.667 5.01 0.00 0.00 3.69
4238 4685 5.708736 TCATCTTTAATTACAGGCCAGGA 57.291 39.130 5.01 0.00 0.00 3.86
4315 4764 7.340256 TCAAGAAAACAACACTAGACCCTAAA 58.660 34.615 0.00 0.00 0.00 1.85
4316 4765 6.891388 TCAAGAAAACAACACTAGACCCTAA 58.109 36.000 0.00 0.00 0.00 2.69
4319 4768 5.763204 TCATCAAGAAAACAACACTAGACCC 59.237 40.000 0.00 0.00 0.00 4.46
4320 4769 6.861065 TCATCAAGAAAACAACACTAGACC 57.139 37.500 0.00 0.00 0.00 3.85
4321 4770 8.162880 CGTATCATCAAGAAAACAACACTAGAC 58.837 37.037 0.00 0.00 0.00 2.59
4322 4771 7.870954 ACGTATCATCAAGAAAACAACACTAGA 59.129 33.333 0.00 0.00 0.00 2.43
4323 4772 8.018677 ACGTATCATCAAGAAAACAACACTAG 57.981 34.615 0.00 0.00 0.00 2.57
4324 4773 7.956420 ACGTATCATCAAGAAAACAACACTA 57.044 32.000 0.00 0.00 0.00 2.74
4325 4774 6.861065 ACGTATCATCAAGAAAACAACACT 57.139 33.333 0.00 0.00 0.00 3.55
4326 4775 7.529519 GTGTACGTATCATCAAGAAAACAACAC 59.470 37.037 0.00 0.00 32.29 3.32
4327 4776 7.439955 AGTGTACGTATCATCAAGAAAACAACA 59.560 33.333 0.00 0.00 0.00 3.33
4328 4777 7.793902 AGTGTACGTATCATCAAGAAAACAAC 58.206 34.615 0.00 0.00 0.00 3.32
4392 4875 1.029681 GTTTTCCTGCCAAGGTCGTT 58.970 50.000 0.00 0.00 44.82 3.85
4455 4972 6.099845 TGAGACTGGATTTTATTACCTCCTCC 59.900 42.308 0.00 0.00 0.00 4.30
4458 4975 6.650120 TGTGAGACTGGATTTTATTACCTCC 58.350 40.000 0.00 0.00 0.00 4.30
4460 4977 7.496346 TCTGTGAGACTGGATTTTATTACCT 57.504 36.000 0.00 0.00 0.00 3.08
4461 4978 8.738645 ATTCTGTGAGACTGGATTTTATTACC 57.261 34.615 0.00 0.00 0.00 2.85
4463 4980 9.396022 GGAATTCTGTGAGACTGGATTTTATTA 57.604 33.333 5.23 0.00 27.14 0.98
4464 4981 7.890127 TGGAATTCTGTGAGACTGGATTTTATT 59.110 33.333 5.23 0.00 27.14 1.40
4465 4982 7.405292 TGGAATTCTGTGAGACTGGATTTTAT 58.595 34.615 5.23 0.00 27.14 1.40
4466 4983 6.778821 TGGAATTCTGTGAGACTGGATTTTA 58.221 36.000 5.23 0.00 27.14 1.52
4473 4990 3.693085 CCCATTGGAATTCTGTGAGACTG 59.307 47.826 3.62 0.00 0.00 3.51
4476 4993 2.309755 AGCCCATTGGAATTCTGTGAGA 59.690 45.455 3.62 0.00 0.00 3.27
4528 5052 5.694006 TGAAAAATAAAGGCCGTGATGTTTG 59.306 36.000 8.81 0.00 0.00 2.93
4537 5061 6.644592 TGAACATTCTTGAAAAATAAAGGCCG 59.355 34.615 0.00 0.00 0.00 6.13
4548 5072 6.378564 TGTTGTACCCTTGAACATTCTTGAAA 59.621 34.615 0.00 0.00 0.00 2.69
4562 5086 1.935199 CGACACGTTTGTTGTACCCTT 59.065 47.619 0.00 0.00 35.47 3.95
4572 5096 1.393539 CTAGCCCATTCGACACGTTTG 59.606 52.381 0.00 0.00 0.00 2.93
4576 5100 0.384309 TAGCTAGCCCATTCGACACG 59.616 55.000 12.13 0.00 0.00 4.49
4578 5102 1.040646 CCTAGCTAGCCCATTCGACA 58.959 55.000 15.74 0.00 0.00 4.35
4581 5105 1.040646 TGTCCTAGCTAGCCCATTCG 58.959 55.000 15.74 0.00 0.00 3.34
4598 5122 6.783708 TTAAGACCCAAAACATGTTCTTGT 57.216 33.333 12.39 7.10 33.64 3.16
4601 5125 7.255486 GCTAGTTTAAGACCCAAAACATGTTCT 60.255 37.037 12.39 0.00 37.92 3.01
4615 5139 6.427242 GGCCCATTAGTATGCTAGTTTAAGAC 59.573 42.308 0.00 0.00 0.00 3.01
4624 5148 3.458118 ACTTGTGGCCCATTAGTATGCTA 59.542 43.478 0.00 0.00 0.00 3.49
4652 5176 5.237344 GGACCTCATTTGTCATACACATAGC 59.763 44.000 0.00 0.00 33.90 2.97
4655 5179 5.178096 TGGACCTCATTTGTCATACACAT 57.822 39.130 0.00 0.00 33.90 3.21
4669 5193 4.155709 TGCCAAACAAAATATGGACCTCA 58.844 39.130 0.00 0.00 36.27 3.86
4670 5194 4.462483 TCTGCCAAACAAAATATGGACCTC 59.538 41.667 0.00 0.00 36.27 3.85
4672 5196 4.799564 TCTGCCAAACAAAATATGGACC 57.200 40.909 0.00 0.00 36.27 4.46
4703 5227 2.256461 GAAAGCGTGCCAAGCAGG 59.744 61.111 5.22 4.97 45.60 4.85
4704 5228 2.256461 GGAAAGCGTGCCAAGCAG 59.744 61.111 5.22 0.00 40.08 4.24
4705 5229 2.518112 TGGAAAGCGTGCCAAGCA 60.518 55.556 5.22 0.00 37.01 3.91
4706 5230 2.256461 CTGGAAAGCGTGCCAAGC 59.744 61.111 0.00 0.00 32.95 4.01
4707 5231 2.256461 GCTGGAAAGCGTGCCAAG 59.744 61.111 0.00 0.00 32.95 3.61
4779 5313 1.815003 CTTGTGCCTAGCTCCAAAAGG 59.185 52.381 0.00 0.00 0.00 3.11
4785 5319 1.276421 TGAGAACTTGTGCCTAGCTCC 59.724 52.381 0.00 0.00 0.00 4.70
4799 5333 4.919754 GCAAAGACACCAATCAATGAGAAC 59.080 41.667 0.00 0.00 0.00 3.01
4800 5334 4.828939 AGCAAAGACACCAATCAATGAGAA 59.171 37.500 0.00 0.00 0.00 2.87
4803 5337 4.401022 AGAGCAAAGACACCAATCAATGA 58.599 39.130 0.00 0.00 0.00 2.57
4807 5341 6.899393 AAATAAGAGCAAAGACACCAATCA 57.101 33.333 0.00 0.00 0.00 2.57
4808 5342 6.524586 CGAAAATAAGAGCAAAGACACCAATC 59.475 38.462 0.00 0.00 0.00 2.67
4812 5346 5.049680 TGACGAAAATAAGAGCAAAGACACC 60.050 40.000 0.00 0.00 0.00 4.16
4839 5373 5.559148 ACAACACTCTTCTTCTCTCCAAT 57.441 39.130 0.00 0.00 0.00 3.16
4846 5380 5.059833 CAGCCTAAACAACACTCTTCTTCT 58.940 41.667 0.00 0.00 0.00 2.85
4878 5669 4.522405 TGTATCACCAAACCTTCAATGTGG 59.478 41.667 0.00 0.00 35.39 4.17
4880 5671 6.377146 GGTATGTATCACCAAACCTTCAATGT 59.623 38.462 0.00 0.00 36.01 2.71
4904 5695 4.609018 CGCTATGCACCGAGGGGG 62.609 72.222 0.00 0.00 43.62 5.40
4924 5717 3.791973 ACGGATTTGTGCTTTTGTTCA 57.208 38.095 0.00 0.00 0.00 3.18
4933 5726 0.447801 CACTGGCTACGGATTTGTGC 59.552 55.000 0.00 0.00 0.00 4.57
4943 5736 1.373570 GCATGAGTTCCACTGGCTAC 58.626 55.000 0.00 0.00 0.00 3.58


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.