Multiple sequence alignment - TraesCS5B01G548800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G548800 chr5B 100.000 2231 0 0 1 2231 701110983 701108753 0.000000e+00 4120
1 TraesCS5B01G548800 chr7A 99.182 978 8 0 362 1339 60281343 60282320 0.000000e+00 1762
2 TraesCS5B01G548800 chr7B 99.081 979 8 1 362 1339 742991475 742992453 0.000000e+00 1757
3 TraesCS5B01G548800 chr7B 98.872 975 11 0 365 1339 716876748 716875774 0.000000e+00 1740
4 TraesCS5B01G548800 chr7D 98.881 983 6 1 362 1339 382052109 382053091 0.000000e+00 1749
5 TraesCS5B01G548800 chr7D 98.576 983 9 1 362 1339 381926031 381927013 0.000000e+00 1733
6 TraesCS5B01G548800 chr7D 98.474 983 10 1 362 1339 203502029 203503011 0.000000e+00 1727
7 TraesCS5B01G548800 chr5A 98.980 980 5 1 365 1339 19246810 19245831 0.000000e+00 1749
8 TraesCS5B01G548800 chr2B 98.875 978 11 0 362 1339 391163039 391164016 0.000000e+00 1746
9 TraesCS5B01G548800 chr2B 93.505 893 54 3 1343 2231 143496882 143497774 0.000000e+00 1325
10 TraesCS5B01G548800 chrUn 98.678 983 12 1 357 1339 186206395 186205414 0.000000e+00 1742
11 TraesCS5B01G548800 chrUn 93.370 362 23 1 1 361 246477909 246477548 3.260000e-148 534
12 TraesCS5B01G548800 chrUn 93.370 362 23 1 1 361 330508335 330507974 3.260000e-148 534
13 TraesCS5B01G548800 chr3D 94.151 889 50 2 1345 2231 306106410 306105522 0.000000e+00 1352
14 TraesCS5B01G548800 chr3D 94.157 890 45 6 1343 2230 315491763 315490879 0.000000e+00 1349
15 TraesCS5B01G548800 chr3D 93.939 891 52 2 1343 2231 168641075 168640185 0.000000e+00 1345
16 TraesCS5B01G548800 chr3D 93.151 365 23 2 1 364 14749151 14748788 3.260000e-148 534
17 TraesCS5B01G548800 chr3D 92.877 365 24 2 1 364 490193880 490193517 1.520000e-146 529
18 TraesCS5B01G548800 chr5D 94.045 890 44 4 1343 2230 455576086 455576968 0.000000e+00 1341
19 TraesCS5B01G548800 chr5D 93.388 363 22 2 3 364 60445197 60444836 9.070000e-149 536
20 TraesCS5B01G548800 chr4D 93.715 891 54 2 1343 2231 21580998 21580108 0.000000e+00 1334
21 TraesCS5B01G548800 chr4D 93.490 891 56 2 1343 2231 415990021 415990911 0.000000e+00 1323
22 TraesCS5B01G548800 chr6D 93.715 891 52 4 1343 2231 343609289 343608401 0.000000e+00 1332
23 TraesCS5B01G548800 chr1D 93.603 891 52 5 1343 2231 261122795 261121908 0.000000e+00 1325
24 TraesCS5B01G548800 chr1D 93.094 362 24 1 1 361 387229854 387229493 1.520000e-146 529
25 TraesCS5B01G548800 chr4B 93.820 356 21 1 1 355 120834165 120834520 3.260000e-148 534
26 TraesCS5B01G548800 chr2D 93.370 362 23 1 1 361 577768587 577768948 3.260000e-148 534
27 TraesCS5B01G548800 chr3B 93.333 360 23 1 3 361 378117896 378117537 4.220000e-147 531


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G548800 chr5B 701108753 701110983 2230 True 4120 4120 100.000 1 2231 1 chr5B.!!$R1 2230
1 TraesCS5B01G548800 chr7A 60281343 60282320 977 False 1762 1762 99.182 362 1339 1 chr7A.!!$F1 977
2 TraesCS5B01G548800 chr7B 742991475 742992453 978 False 1757 1757 99.081 362 1339 1 chr7B.!!$F1 977
3 TraesCS5B01G548800 chr7B 716875774 716876748 974 True 1740 1740 98.872 365 1339 1 chr7B.!!$R1 974
4 TraesCS5B01G548800 chr7D 382052109 382053091 982 False 1749 1749 98.881 362 1339 1 chr7D.!!$F3 977
5 TraesCS5B01G548800 chr7D 381926031 381927013 982 False 1733 1733 98.576 362 1339 1 chr7D.!!$F2 977
6 TraesCS5B01G548800 chr7D 203502029 203503011 982 False 1727 1727 98.474 362 1339 1 chr7D.!!$F1 977
7 TraesCS5B01G548800 chr5A 19245831 19246810 979 True 1749 1749 98.980 365 1339 1 chr5A.!!$R1 974
8 TraesCS5B01G548800 chr2B 391163039 391164016 977 False 1746 1746 98.875 362 1339 1 chr2B.!!$F2 977
9 TraesCS5B01G548800 chr2B 143496882 143497774 892 False 1325 1325 93.505 1343 2231 1 chr2B.!!$F1 888
10 TraesCS5B01G548800 chrUn 186205414 186206395 981 True 1742 1742 98.678 357 1339 1 chrUn.!!$R1 982
11 TraesCS5B01G548800 chr3D 306105522 306106410 888 True 1352 1352 94.151 1345 2231 1 chr3D.!!$R3 886
12 TraesCS5B01G548800 chr3D 315490879 315491763 884 True 1349 1349 94.157 1343 2230 1 chr3D.!!$R4 887
13 TraesCS5B01G548800 chr3D 168640185 168641075 890 True 1345 1345 93.939 1343 2231 1 chr3D.!!$R2 888
14 TraesCS5B01G548800 chr5D 455576086 455576968 882 False 1341 1341 94.045 1343 2230 1 chr5D.!!$F1 887
15 TraesCS5B01G548800 chr4D 21580108 21580998 890 True 1334 1334 93.715 1343 2231 1 chr4D.!!$R1 888
16 TraesCS5B01G548800 chr4D 415990021 415990911 890 False 1323 1323 93.490 1343 2231 1 chr4D.!!$F1 888
17 TraesCS5B01G548800 chr6D 343608401 343609289 888 True 1332 1332 93.715 1343 2231 1 chr6D.!!$R1 888
18 TraesCS5B01G548800 chr1D 261121908 261122795 887 True 1325 1325 93.603 1343 2231 1 chr1D.!!$R1 888

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
152 153 0.10852 CGGCTTGTCGCTAAGGGTTA 60.109 55.0 1.59 0.0 39.13 2.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1368 1380 0.322975 AACTCCGAGATGCTTGCACT 59.677 50.0 1.33 0.0 0.0 4.4 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 5.921962 CCGAGATAGGATCCATGTATGAA 57.078 43.478 15.82 0.00 0.00 2.57
23 24 6.286240 CCGAGATAGGATCCATGTATGAAA 57.714 41.667 15.82 0.00 0.00 2.69
24 25 6.701340 CCGAGATAGGATCCATGTATGAAAA 58.299 40.000 15.82 0.00 0.00 2.29
25 26 6.591834 CCGAGATAGGATCCATGTATGAAAAC 59.408 42.308 15.82 0.00 0.00 2.43
26 27 7.154656 CGAGATAGGATCCATGTATGAAAACA 58.845 38.462 15.82 0.00 0.00 2.83
27 28 7.657354 CGAGATAGGATCCATGTATGAAAACAA 59.343 37.037 15.82 0.00 32.02 2.83
28 29 9.342308 GAGATAGGATCCATGTATGAAAACAAA 57.658 33.333 15.82 0.00 32.02 2.83
29 30 9.347240 AGATAGGATCCATGTATGAAAACAAAG 57.653 33.333 15.82 0.00 32.02 2.77
30 31 9.125026 GATAGGATCCATGTATGAAAACAAAGT 57.875 33.333 15.82 0.00 32.02 2.66
33 34 8.906867 AGGATCCATGTATGAAAACAAAGTATG 58.093 33.333 15.82 0.00 32.02 2.39
34 35 8.137437 GGATCCATGTATGAAAACAAAGTATGG 58.863 37.037 6.95 0.00 32.02 2.74
35 36 8.821686 ATCCATGTATGAAAACAAAGTATGGA 57.178 30.769 0.00 0.00 37.72 3.41
36 37 8.050778 TCCATGTATGAAAACAAAGTATGGAC 57.949 34.615 0.00 0.00 31.67 4.02
37 38 7.888021 TCCATGTATGAAAACAAAGTATGGACT 59.112 33.333 0.00 0.00 31.67 3.85
48 49 4.618920 AAGTATGGACTTTGACGGACTT 57.381 40.909 0.00 0.00 43.70 3.01
49 50 3.926616 AGTATGGACTTTGACGGACTTG 58.073 45.455 0.00 0.00 28.61 3.16
50 51 1.523758 ATGGACTTTGACGGACTTGC 58.476 50.000 0.00 0.00 0.00 4.01
51 52 0.534203 TGGACTTTGACGGACTTGCC 60.534 55.000 0.00 0.00 0.00 4.52
52 53 1.235281 GGACTTTGACGGACTTGCCC 61.235 60.000 0.00 0.00 0.00 5.36
61 62 2.408333 GGACTTGCCCGATGATTGG 58.592 57.895 0.00 0.00 0.00 3.16
67 68 3.122850 CCCGATGATTGGCAAGCC 58.877 61.111 13.59 3.61 0.00 4.35
68 69 1.753848 CCCGATGATTGGCAAGCCA 60.754 57.895 13.59 10.24 45.63 4.75
69 70 1.111116 CCCGATGATTGGCAAGCCAT 61.111 55.000 15.49 14.44 46.64 4.40
70 71 1.608055 CCGATGATTGGCAAGCCATA 58.392 50.000 15.49 6.52 46.64 2.74
71 72 1.538512 CCGATGATTGGCAAGCCATAG 59.461 52.381 15.49 13.98 46.64 2.23
72 73 2.497138 CGATGATTGGCAAGCCATAGA 58.503 47.619 15.49 0.00 46.64 1.98
73 74 2.483106 CGATGATTGGCAAGCCATAGAG 59.517 50.000 15.49 6.77 46.64 2.43
74 75 3.748083 GATGATTGGCAAGCCATAGAGA 58.252 45.455 15.49 0.00 46.64 3.10
75 76 3.650281 TGATTGGCAAGCCATAGAGAA 57.350 42.857 15.49 0.00 46.64 2.87
76 77 4.174704 TGATTGGCAAGCCATAGAGAAT 57.825 40.909 15.49 3.90 46.64 2.40
77 78 5.308976 TGATTGGCAAGCCATAGAGAATA 57.691 39.130 15.49 0.00 46.64 1.75
78 79 5.693961 TGATTGGCAAGCCATAGAGAATAA 58.306 37.500 15.49 0.00 46.64 1.40
79 80 5.766670 TGATTGGCAAGCCATAGAGAATAAG 59.233 40.000 15.49 0.00 46.64 1.73
80 81 4.778213 TGGCAAGCCATAGAGAATAAGT 57.222 40.909 10.24 0.00 41.89 2.24
81 82 4.454678 TGGCAAGCCATAGAGAATAAGTG 58.545 43.478 10.24 0.00 41.89 3.16
82 83 3.817647 GGCAAGCCATAGAGAATAAGTGG 59.182 47.826 6.14 0.00 35.81 4.00
83 84 4.444876 GGCAAGCCATAGAGAATAAGTGGA 60.445 45.833 6.14 0.00 35.81 4.02
84 85 5.312079 GCAAGCCATAGAGAATAAGTGGAT 58.688 41.667 0.00 0.00 31.59 3.41
85 86 5.411053 GCAAGCCATAGAGAATAAGTGGATC 59.589 44.000 0.00 0.00 31.59 3.36
86 87 6.743773 GCAAGCCATAGAGAATAAGTGGATCT 60.744 42.308 0.00 0.00 31.59 2.75
87 88 7.222872 CAAGCCATAGAGAATAAGTGGATCTT 58.777 38.462 0.00 0.00 39.89 2.40
88 89 7.385894 AGCCATAGAGAATAAGTGGATCTTT 57.614 36.000 0.00 0.00 37.56 2.52
89 90 8.497910 AGCCATAGAGAATAAGTGGATCTTTA 57.502 34.615 0.00 0.00 37.56 1.85
90 91 8.938883 AGCCATAGAGAATAAGTGGATCTTTAA 58.061 33.333 0.00 0.00 37.56 1.52
91 92 9.213799 GCCATAGAGAATAAGTGGATCTTTAAG 57.786 37.037 0.00 0.00 37.56 1.85
101 102 9.883142 ATAAGTGGATCTTTAAGAAGAAGACTG 57.117 33.333 0.00 0.00 44.61 3.51
102 103 6.706295 AGTGGATCTTTAAGAAGAAGACTGG 58.294 40.000 0.00 0.00 44.61 4.00
103 104 5.352846 GTGGATCTTTAAGAAGAAGACTGGC 59.647 44.000 0.00 0.00 44.61 4.85
104 105 4.568760 GGATCTTTAAGAAGAAGACTGGCG 59.431 45.833 0.00 0.00 44.61 5.69
105 106 3.326747 TCTTTAAGAAGAAGACTGGCGC 58.673 45.455 0.00 0.00 38.91 6.53
106 107 2.094762 TTAAGAAGAAGACTGGCGCC 57.905 50.000 22.73 22.73 0.00 6.53
107 108 0.973632 TAAGAAGAAGACTGGCGCCA 59.026 50.000 30.59 30.59 0.00 5.69
108 109 0.326264 AAGAAGAAGACTGGCGCCAT 59.674 50.000 32.87 20.35 0.00 4.40
109 110 0.392193 AGAAGAAGACTGGCGCCATG 60.392 55.000 32.87 25.18 0.00 3.66
110 111 1.372087 GAAGAAGACTGGCGCCATGG 61.372 60.000 32.87 22.45 0.00 3.66
111 112 2.045926 GAAGACTGGCGCCATGGT 60.046 61.111 32.87 25.97 0.00 3.55
112 113 1.220749 GAAGACTGGCGCCATGGTA 59.779 57.895 32.87 6.37 0.00 3.25
113 114 0.392461 GAAGACTGGCGCCATGGTAA 60.392 55.000 32.87 5.45 0.00 2.85
114 115 0.255890 AAGACTGGCGCCATGGTAAT 59.744 50.000 32.87 14.46 0.00 1.89
115 116 0.464373 AGACTGGCGCCATGGTAATG 60.464 55.000 32.87 19.14 0.00 1.90
116 117 0.748005 GACTGGCGCCATGGTAATGT 60.748 55.000 32.87 22.63 31.27 2.71
117 118 1.031571 ACTGGCGCCATGGTAATGTG 61.032 55.000 32.87 17.51 31.27 3.21
118 119 0.747644 CTGGCGCCATGGTAATGTGA 60.748 55.000 32.87 1.17 31.27 3.58
119 120 1.029408 TGGCGCCATGGTAATGTGAC 61.029 55.000 29.03 0.00 31.27 3.67
120 121 1.724582 GGCGCCATGGTAATGTGACC 61.725 60.000 24.80 0.00 40.21 4.02
121 122 0.748005 GCGCCATGGTAATGTGACCT 60.748 55.000 14.67 0.00 40.46 3.85
122 123 1.750193 CGCCATGGTAATGTGACCTT 58.250 50.000 14.67 0.00 40.46 3.50
123 124 1.670811 CGCCATGGTAATGTGACCTTC 59.329 52.381 14.67 0.00 40.46 3.46
124 125 2.680805 CGCCATGGTAATGTGACCTTCT 60.681 50.000 14.67 0.00 40.46 2.85
125 126 3.431626 CGCCATGGTAATGTGACCTTCTA 60.432 47.826 14.67 0.00 40.46 2.10
126 127 4.718961 GCCATGGTAATGTGACCTTCTAT 58.281 43.478 14.67 0.00 40.46 1.98
127 128 5.510690 CGCCATGGTAATGTGACCTTCTATA 60.511 44.000 14.67 0.00 40.46 1.31
128 129 6.296026 GCCATGGTAATGTGACCTTCTATAA 58.704 40.000 14.67 0.00 40.46 0.98
129 130 6.428159 GCCATGGTAATGTGACCTTCTATAAG 59.572 42.308 14.67 0.00 40.46 1.73
130 131 6.936900 CCATGGTAATGTGACCTTCTATAAGG 59.063 42.308 2.57 5.37 43.84 2.69
131 132 8.438047 CCATGGTAATGTGACCTTCTATAAGGC 61.438 44.444 2.57 1.45 42.96 4.35
139 140 2.760374 CCTTCTATAAGGCTCGGCTTG 58.240 52.381 15.05 0.02 45.78 4.01
140 141 2.103263 CCTTCTATAAGGCTCGGCTTGT 59.897 50.000 15.05 11.20 45.78 3.16
141 142 3.385577 CTTCTATAAGGCTCGGCTTGTC 58.614 50.000 15.05 0.00 0.00 3.18
142 143 1.337071 TCTATAAGGCTCGGCTTGTCG 59.663 52.381 15.05 5.71 0.00 4.35
143 144 0.249322 TATAAGGCTCGGCTTGTCGC 60.249 55.000 15.05 0.00 38.13 5.19
144 145 1.961180 ATAAGGCTCGGCTTGTCGCT 61.961 55.000 15.05 0.00 39.13 4.93
145 146 1.317431 TAAGGCTCGGCTTGTCGCTA 61.317 55.000 15.05 0.00 39.13 4.26
146 147 2.125673 GGCTCGGCTTGTCGCTAA 60.126 61.111 0.00 0.00 39.13 3.09
147 148 2.167861 GGCTCGGCTTGTCGCTAAG 61.168 63.158 0.00 0.00 39.13 2.18
148 149 2.167861 GCTCGGCTTGTCGCTAAGG 61.168 63.158 0.00 0.00 39.13 2.69
149 150 1.519455 CTCGGCTTGTCGCTAAGGG 60.519 63.158 0.00 0.00 39.13 3.95
150 151 2.227089 CTCGGCTTGTCGCTAAGGGT 62.227 60.000 0.00 0.00 39.13 4.34
151 152 1.375523 CGGCTTGTCGCTAAGGGTT 60.376 57.895 1.59 0.00 39.13 4.11
152 153 0.108520 CGGCTTGTCGCTAAGGGTTA 60.109 55.000 1.59 0.00 39.13 2.85
153 154 1.472728 CGGCTTGTCGCTAAGGGTTAT 60.473 52.381 1.59 0.00 39.13 1.89
154 155 2.210961 GGCTTGTCGCTAAGGGTTATC 58.789 52.381 1.59 0.00 39.13 1.75
155 156 2.419574 GGCTTGTCGCTAAGGGTTATCA 60.420 50.000 1.59 0.00 39.13 2.15
156 157 3.267483 GCTTGTCGCTAAGGGTTATCAA 58.733 45.455 1.59 0.00 35.14 2.57
157 158 3.063588 GCTTGTCGCTAAGGGTTATCAAC 59.936 47.826 1.59 0.00 35.14 3.18
158 159 3.965379 TGTCGCTAAGGGTTATCAACA 57.035 42.857 0.00 0.00 0.00 3.33
159 160 4.274602 TGTCGCTAAGGGTTATCAACAA 57.725 40.909 0.00 0.00 0.00 2.83
160 161 4.250464 TGTCGCTAAGGGTTATCAACAAG 58.750 43.478 0.00 0.00 0.00 3.16
161 162 4.251268 GTCGCTAAGGGTTATCAACAAGT 58.749 43.478 0.00 0.00 0.00 3.16
162 163 4.694037 GTCGCTAAGGGTTATCAACAAGTT 59.306 41.667 0.00 0.00 0.00 2.66
163 164 4.933400 TCGCTAAGGGTTATCAACAAGTTC 59.067 41.667 0.00 0.00 0.00 3.01
164 165 4.693566 CGCTAAGGGTTATCAACAAGTTCA 59.306 41.667 0.00 0.00 0.00 3.18
165 166 5.180492 CGCTAAGGGTTATCAACAAGTTCAA 59.820 40.000 0.00 0.00 0.00 2.69
166 167 6.612306 GCTAAGGGTTATCAACAAGTTCAAG 58.388 40.000 0.00 0.00 0.00 3.02
167 168 6.349363 GCTAAGGGTTATCAACAAGTTCAAGG 60.349 42.308 0.00 0.00 0.00 3.61
168 169 4.407365 AGGGTTATCAACAAGTTCAAGGG 58.593 43.478 0.00 0.00 0.00 3.95
169 170 3.509967 GGGTTATCAACAAGTTCAAGGGG 59.490 47.826 0.00 0.00 0.00 4.79
170 171 4.149598 GGTTATCAACAAGTTCAAGGGGT 58.850 43.478 0.00 0.00 0.00 4.95
171 172 4.587262 GGTTATCAACAAGTTCAAGGGGTT 59.413 41.667 0.00 0.00 0.00 4.11
172 173 5.508994 GGTTATCAACAAGTTCAAGGGGTTG 60.509 44.000 0.00 0.00 40.00 3.77
173 174 3.374042 TCAACAAGTTCAAGGGGTTGA 57.626 42.857 0.00 0.00 43.78 3.18
174 175 3.020984 TCAACAAGTTCAAGGGGTTGAC 58.979 45.455 0.00 0.00 41.87 3.18
175 176 3.023832 CAACAAGTTCAAGGGGTTGACT 58.976 45.455 0.00 0.00 40.86 3.41
176 177 4.080243 TCAACAAGTTCAAGGGGTTGACTA 60.080 41.667 0.00 0.00 41.87 2.59
177 178 3.816994 ACAAGTTCAAGGGGTTGACTAC 58.183 45.455 0.00 0.00 0.00 2.73
178 179 3.201266 ACAAGTTCAAGGGGTTGACTACA 59.799 43.478 0.00 0.00 0.00 2.74
179 180 4.204012 CAAGTTCAAGGGGTTGACTACAA 58.796 43.478 0.00 0.00 0.00 2.41
180 181 4.724279 AGTTCAAGGGGTTGACTACAAT 57.276 40.909 0.00 0.00 38.32 2.71
181 182 4.398319 AGTTCAAGGGGTTGACTACAATG 58.602 43.478 0.00 0.00 38.32 2.82
182 183 4.104102 AGTTCAAGGGGTTGACTACAATGA 59.896 41.667 0.00 0.00 38.32 2.57
183 184 4.286297 TCAAGGGGTTGACTACAATGAG 57.714 45.455 0.00 0.00 38.32 2.90
184 185 3.907474 TCAAGGGGTTGACTACAATGAGA 59.093 43.478 0.00 0.00 38.32 3.27
185 186 3.983044 AGGGGTTGACTACAATGAGAC 57.017 47.619 0.00 0.00 38.32 3.36
186 187 2.572104 AGGGGTTGACTACAATGAGACC 59.428 50.000 0.00 0.00 38.32 3.85
187 188 2.572104 GGGGTTGACTACAATGAGACCT 59.428 50.000 0.00 0.00 38.32 3.85
188 189 3.009143 GGGGTTGACTACAATGAGACCTT 59.991 47.826 0.00 0.00 38.32 3.50
189 190 4.254492 GGGTTGACTACAATGAGACCTTC 58.746 47.826 0.00 0.00 38.32 3.46
190 191 4.020128 GGGTTGACTACAATGAGACCTTCT 60.020 45.833 0.00 0.00 38.32 2.85
191 192 5.172205 GGTTGACTACAATGAGACCTTCTC 58.828 45.833 0.00 0.00 43.65 2.87
200 201 0.456628 GAGACCTTCTCACCCGTAGC 59.543 60.000 0.00 0.00 42.90 3.58
201 202 1.139095 GACCTTCTCACCCGTAGCG 59.861 63.158 0.00 0.00 0.00 4.26
202 203 1.303888 ACCTTCTCACCCGTAGCGA 60.304 57.895 0.00 0.00 0.00 4.93
203 204 0.896940 ACCTTCTCACCCGTAGCGAA 60.897 55.000 0.00 0.00 0.00 4.70
204 205 0.179134 CCTTCTCACCCGTAGCGAAG 60.179 60.000 0.00 0.00 0.00 3.79
219 220 2.631418 CGAAGCTAAAGTCCGTCTGA 57.369 50.000 0.00 0.00 0.00 3.27
220 221 2.942710 CGAAGCTAAAGTCCGTCTGAA 58.057 47.619 0.00 0.00 0.00 3.02
221 222 3.512680 CGAAGCTAAAGTCCGTCTGAAT 58.487 45.455 0.00 0.00 0.00 2.57
222 223 3.927142 CGAAGCTAAAGTCCGTCTGAATT 59.073 43.478 0.00 0.00 31.34 2.17
223 224 5.100259 CGAAGCTAAAGTCCGTCTGAATTA 58.900 41.667 0.00 0.00 29.59 1.40
224 225 5.749109 CGAAGCTAAAGTCCGTCTGAATTAT 59.251 40.000 0.00 0.00 29.59 1.28
225 226 6.291849 CGAAGCTAAAGTCCGTCTGAATTATG 60.292 42.308 0.00 0.00 29.59 1.90
226 227 5.978814 AGCTAAAGTCCGTCTGAATTATGT 58.021 37.500 0.00 0.00 29.59 2.29
227 228 6.407202 AGCTAAAGTCCGTCTGAATTATGTT 58.593 36.000 0.00 0.00 29.59 2.71
228 229 7.553334 AGCTAAAGTCCGTCTGAATTATGTTA 58.447 34.615 0.00 0.00 29.59 2.41
229 230 7.707035 AGCTAAAGTCCGTCTGAATTATGTTAG 59.293 37.037 0.00 0.00 29.59 2.34
230 231 6.663944 AAAGTCCGTCTGAATTATGTTAGC 57.336 37.500 0.00 0.00 29.59 3.09
231 232 5.339008 AGTCCGTCTGAATTATGTTAGCA 57.661 39.130 0.00 0.00 0.00 3.49
232 233 5.730550 AGTCCGTCTGAATTATGTTAGCAA 58.269 37.500 0.00 0.00 0.00 3.91
233 234 6.349300 AGTCCGTCTGAATTATGTTAGCAAT 58.651 36.000 0.00 0.00 0.00 3.56
234 235 6.823689 AGTCCGTCTGAATTATGTTAGCAATT 59.176 34.615 0.00 0.00 0.00 2.32
235 236 6.907212 GTCCGTCTGAATTATGTTAGCAATTG 59.093 38.462 0.00 0.00 0.00 2.32
236 237 5.682862 CCGTCTGAATTATGTTAGCAATTGC 59.317 40.000 23.05 23.05 42.49 3.56
255 256 8.675040 CAATTGCTGCATTCTATGATTATGAG 57.325 34.615 1.84 0.00 0.00 2.90
256 257 8.512138 CAATTGCTGCATTCTATGATTATGAGA 58.488 33.333 1.84 0.00 0.00 3.27
257 258 8.809468 ATTGCTGCATTCTATGATTATGAGAT 57.191 30.769 1.84 0.00 0.00 2.75
258 259 7.845066 TGCTGCATTCTATGATTATGAGATC 57.155 36.000 0.00 0.00 0.00 2.75
259 260 7.621796 TGCTGCATTCTATGATTATGAGATCT 58.378 34.615 0.00 0.00 0.00 2.75
260 261 7.549488 TGCTGCATTCTATGATTATGAGATCTG 59.451 37.037 0.00 0.00 0.00 2.90
261 262 7.011576 GCTGCATTCTATGATTATGAGATCTGG 59.988 40.741 0.00 0.00 0.00 3.86
262 263 6.822170 TGCATTCTATGATTATGAGATCTGGC 59.178 38.462 0.00 0.00 0.00 4.85
263 264 6.822170 GCATTCTATGATTATGAGATCTGGCA 59.178 38.462 0.00 0.00 0.00 4.92
264 265 7.336176 GCATTCTATGATTATGAGATCTGGCAA 59.664 37.037 0.00 0.00 0.00 4.52
265 266 9.227777 CATTCTATGATTATGAGATCTGGCAAA 57.772 33.333 0.00 0.00 0.00 3.68
266 267 9.976776 ATTCTATGATTATGAGATCTGGCAAAT 57.023 29.630 0.00 0.00 0.00 2.32
267 268 8.788325 TCTATGATTATGAGATCTGGCAAATG 57.212 34.615 0.00 0.00 0.00 2.32
268 269 6.835819 ATGATTATGAGATCTGGCAAATGG 57.164 37.500 0.00 0.00 0.00 3.16
269 270 5.944135 TGATTATGAGATCTGGCAAATGGA 58.056 37.500 0.00 0.00 0.00 3.41
270 271 5.766670 TGATTATGAGATCTGGCAAATGGAC 59.233 40.000 0.00 0.00 0.00 4.02
271 272 2.028420 TGAGATCTGGCAAATGGACG 57.972 50.000 0.00 0.00 0.00 4.79
272 273 1.278985 TGAGATCTGGCAAATGGACGT 59.721 47.619 0.00 0.00 0.00 4.34
273 274 1.936547 GAGATCTGGCAAATGGACGTC 59.063 52.381 7.13 7.13 0.00 4.34
274 275 1.278985 AGATCTGGCAAATGGACGTCA 59.721 47.619 18.91 3.91 0.00 4.35
275 276 2.083774 GATCTGGCAAATGGACGTCAA 58.916 47.619 18.91 6.46 0.00 3.18
276 277 1.974265 TCTGGCAAATGGACGTCAAA 58.026 45.000 18.91 5.15 0.00 2.69
277 278 2.302260 TCTGGCAAATGGACGTCAAAA 58.698 42.857 18.91 2.28 0.00 2.44
278 279 2.034053 TCTGGCAAATGGACGTCAAAAC 59.966 45.455 18.91 0.00 0.00 2.43
279 280 1.751351 TGGCAAATGGACGTCAAAACA 59.249 42.857 18.91 6.27 0.00 2.83
280 281 2.166459 TGGCAAATGGACGTCAAAACAA 59.834 40.909 18.91 0.00 0.00 2.83
281 282 2.538037 GGCAAATGGACGTCAAAACAAC 59.462 45.455 18.91 0.00 0.00 3.32
282 283 3.182967 GCAAATGGACGTCAAAACAACA 58.817 40.909 18.91 4.28 0.00 3.33
283 284 3.801594 GCAAATGGACGTCAAAACAACAT 59.198 39.130 18.91 6.64 0.00 2.71
284 285 4.269844 GCAAATGGACGTCAAAACAACATT 59.730 37.500 18.91 12.38 0.00 2.71
285 286 5.556194 GCAAATGGACGTCAAAACAACATTC 60.556 40.000 18.91 1.86 0.00 2.67
286 287 3.701532 TGGACGTCAAAACAACATTCC 57.298 42.857 18.91 0.00 0.00 3.01
287 288 3.283751 TGGACGTCAAAACAACATTCCT 58.716 40.909 18.91 0.00 0.00 3.36
288 289 3.697045 TGGACGTCAAAACAACATTCCTT 59.303 39.130 18.91 0.00 0.00 3.36
289 290 4.882427 TGGACGTCAAAACAACATTCCTTA 59.118 37.500 18.91 0.00 0.00 2.69
290 291 5.357314 TGGACGTCAAAACAACATTCCTTAA 59.643 36.000 18.91 0.00 0.00 1.85
291 292 6.039941 TGGACGTCAAAACAACATTCCTTAAT 59.960 34.615 18.91 0.00 0.00 1.40
292 293 6.362283 GGACGTCAAAACAACATTCCTTAATG 59.638 38.462 18.91 0.00 46.66 1.90
320 321 8.666129 TCCCTTAAGGACGATTTCTATATGAT 57.334 34.615 23.74 0.00 40.93 2.45
321 322 8.531982 TCCCTTAAGGACGATTTCTATATGATG 58.468 37.037 23.74 0.00 40.93 3.07
322 323 7.278868 CCCTTAAGGACGATTTCTATATGATGC 59.721 40.741 23.74 0.00 38.24 3.91
323 324 7.819415 CCTTAAGGACGATTTCTATATGATGCA 59.181 37.037 17.21 0.00 37.39 3.96
324 325 9.376075 CTTAAGGACGATTTCTATATGATGCAT 57.624 33.333 0.00 0.00 0.00 3.96
325 326 7.840342 AAGGACGATTTCTATATGATGCATC 57.160 36.000 20.14 20.14 0.00 3.91
326 327 6.344500 AGGACGATTTCTATATGATGCATCC 58.656 40.000 23.67 3.97 0.00 3.51
327 328 6.070596 AGGACGATTTCTATATGATGCATCCA 60.071 38.462 23.67 12.09 0.00 3.41
328 329 6.257411 GGACGATTTCTATATGATGCATCCAG 59.743 42.308 23.67 14.62 0.00 3.86
329 330 6.939622 ACGATTTCTATATGATGCATCCAGA 58.060 36.000 23.67 16.49 0.00 3.86
330 331 7.389232 ACGATTTCTATATGATGCATCCAGAA 58.611 34.615 23.67 20.56 0.00 3.02
331 332 7.548427 ACGATTTCTATATGATGCATCCAGAAG 59.452 37.037 23.67 15.24 30.79 2.85
332 333 7.011202 CGATTTCTATATGATGCATCCAGAAGG 59.989 40.741 23.67 13.92 30.79 3.46
333 334 6.692849 TTCTATATGATGCATCCAGAAGGT 57.307 37.500 23.67 5.78 35.89 3.50
334 335 6.692849 TCTATATGATGCATCCAGAAGGTT 57.307 37.500 23.67 3.24 35.89 3.50
335 336 7.083062 TCTATATGATGCATCCAGAAGGTTT 57.917 36.000 23.67 1.75 35.89 3.27
336 337 7.520798 TCTATATGATGCATCCAGAAGGTTTT 58.479 34.615 23.67 0.40 35.89 2.43
337 338 4.730949 ATGATGCATCCAGAAGGTTTTG 57.269 40.909 23.67 0.00 35.89 2.44
338 339 3.499338 TGATGCATCCAGAAGGTTTTGT 58.501 40.909 23.67 0.00 35.89 2.83
339 340 3.507233 TGATGCATCCAGAAGGTTTTGTC 59.493 43.478 23.67 0.00 35.89 3.18
340 341 1.879380 TGCATCCAGAAGGTTTTGTCG 59.121 47.619 0.00 0.00 35.89 4.35
341 342 2.151202 GCATCCAGAAGGTTTTGTCGA 58.849 47.619 0.00 0.00 35.89 4.20
342 343 2.749621 GCATCCAGAAGGTTTTGTCGAT 59.250 45.455 0.00 0.00 35.89 3.59
343 344 3.181506 GCATCCAGAAGGTTTTGTCGATC 60.182 47.826 0.00 0.00 35.89 3.69
344 345 3.053831 TCCAGAAGGTTTTGTCGATCC 57.946 47.619 0.00 0.00 35.89 3.36
345 346 2.637872 TCCAGAAGGTTTTGTCGATCCT 59.362 45.455 0.00 0.00 35.89 3.24
346 347 3.835978 TCCAGAAGGTTTTGTCGATCCTA 59.164 43.478 0.00 0.00 35.89 2.94
347 348 4.285003 TCCAGAAGGTTTTGTCGATCCTAA 59.715 41.667 0.00 0.00 35.89 2.69
348 349 4.631813 CCAGAAGGTTTTGTCGATCCTAAG 59.368 45.833 0.00 0.00 0.00 2.18
349 350 5.479306 CAGAAGGTTTTGTCGATCCTAAGA 58.521 41.667 0.00 0.00 0.00 2.10
350 351 5.932303 CAGAAGGTTTTGTCGATCCTAAGAA 59.068 40.000 0.00 0.00 0.00 2.52
351 352 6.595716 CAGAAGGTTTTGTCGATCCTAAGAAT 59.404 38.462 0.00 0.00 0.00 2.40
352 353 6.595716 AGAAGGTTTTGTCGATCCTAAGAATG 59.404 38.462 0.00 0.00 0.00 2.67
353 354 4.636206 AGGTTTTGTCGATCCTAAGAATGC 59.364 41.667 0.00 0.00 0.00 3.56
354 355 4.636206 GGTTTTGTCGATCCTAAGAATGCT 59.364 41.667 0.00 0.00 0.00 3.79
355 356 5.447818 GGTTTTGTCGATCCTAAGAATGCTG 60.448 44.000 0.00 0.00 0.00 4.41
356 357 3.459232 TGTCGATCCTAAGAATGCTGG 57.541 47.619 0.00 0.00 0.00 4.85
357 358 2.139118 GTCGATCCTAAGAATGCTGGC 58.861 52.381 0.00 0.00 0.00 4.85
358 359 1.762370 TCGATCCTAAGAATGCTGGCA 59.238 47.619 0.00 0.00 0.00 4.92
359 360 2.170397 TCGATCCTAAGAATGCTGGCAA 59.830 45.455 0.00 0.00 0.00 4.52
360 361 2.547211 CGATCCTAAGAATGCTGGCAAG 59.453 50.000 0.00 0.00 0.00 4.01
361 362 3.742327 CGATCCTAAGAATGCTGGCAAGA 60.742 47.826 0.00 0.00 0.00 3.02
362 363 3.272574 TCCTAAGAATGCTGGCAAGAG 57.727 47.619 0.00 0.00 0.00 2.85
363 364 2.573462 TCCTAAGAATGCTGGCAAGAGT 59.427 45.455 0.00 0.00 0.00 3.24
411 412 0.110486 GAAGTGTGGGGGAGAAGCAA 59.890 55.000 0.00 0.00 0.00 3.91
927 939 3.727258 CCCACATGGAAGCGGGGA 61.727 66.667 0.00 0.00 41.49 4.81
1339 1351 7.401493 CCTAGGACATGGATTCTATATGAACCT 59.599 40.741 1.05 0.00 37.52 3.50
1340 1352 9.480861 CTAGGACATGGATTCTATATGAACCTA 57.519 37.037 0.00 0.00 37.52 3.08
1341 1353 8.742125 AGGACATGGATTCTATATGAACCTAA 57.258 34.615 0.00 0.00 37.52 2.69
1396 1408 2.749621 GCATCTCGGAGTTGGAACATTT 59.250 45.455 15.76 0.00 39.30 2.32
1476 1488 5.623956 TTTACAAGAAAGTGAGTGGGAGA 57.376 39.130 0.00 0.00 0.00 3.71
1599 1612 2.902608 TGAAGGACCTTGGAGAAGCTA 58.097 47.619 12.68 0.00 0.00 3.32
1667 1680 2.842208 TTGGTCTTTCACAAAGCACG 57.158 45.000 0.00 0.00 38.39 5.34
1670 1683 2.869801 TGGTCTTTCACAAAGCACGTAG 59.130 45.455 0.00 0.00 38.39 3.51
1822 1841 1.649321 CCCTATGCCTCAGCCATAGA 58.351 55.000 4.15 0.00 38.69 1.98
1936 1955 7.118680 GGAACACTGAATAACGGTCAAGAATAA 59.881 37.037 0.00 0.00 35.72 1.40
1995 2014 4.222145 TCGTTTATAGAGGTGCCAAAGAGT 59.778 41.667 0.00 0.00 0.00 3.24
2127 2149 0.823356 AAGCAAAGCATCGTGGTGGT 60.823 50.000 0.00 0.00 0.00 4.16
2132 2154 2.315925 AAGCATCGTGGTGGTATCTG 57.684 50.000 0.00 0.00 0.00 2.90
2162 2184 4.145807 AGCGGAGTACATAGCTACTTCAT 58.854 43.478 0.00 0.00 38.29 2.57
2168 2190 7.434492 GGAGTACATAGCTACTTCATAAGCAA 58.566 38.462 0.00 0.00 41.32 3.91
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.921962 TTCATACATGGATCCTATCTCGG 57.078 43.478 14.23 0.00 0.00 4.63
2 3 8.908786 TTGTTTTCATACATGGATCCTATCTC 57.091 34.615 14.23 0.00 0.00 2.75
4 5 9.125026 ACTTTGTTTTCATACATGGATCCTATC 57.875 33.333 14.23 0.00 0.00 2.08
7 8 8.906867 CATACTTTGTTTTCATACATGGATCCT 58.093 33.333 14.23 0.00 0.00 3.24
8 9 8.137437 CCATACTTTGTTTTCATACATGGATCC 58.863 37.037 4.20 4.20 28.90 3.36
9 10 8.902806 TCCATACTTTGTTTTCATACATGGATC 58.097 33.333 0.00 0.00 30.93 3.36
10 11 8.686334 GTCCATACTTTGTTTTCATACATGGAT 58.314 33.333 0.00 0.00 35.68 3.41
11 12 7.888021 AGTCCATACTTTGTTTTCATACATGGA 59.112 33.333 0.00 0.00 32.55 3.41
12 13 8.055279 AGTCCATACTTTGTTTTCATACATGG 57.945 34.615 0.00 0.00 29.00 3.66
28 29 3.864921 GCAAGTCCGTCAAAGTCCATACT 60.865 47.826 0.00 0.00 37.65 2.12
29 30 2.415512 GCAAGTCCGTCAAAGTCCATAC 59.584 50.000 0.00 0.00 0.00 2.39
30 31 2.614481 GGCAAGTCCGTCAAAGTCCATA 60.614 50.000 0.00 0.00 0.00 2.74
31 32 1.523758 GCAAGTCCGTCAAAGTCCAT 58.476 50.000 0.00 0.00 0.00 3.41
32 33 0.534203 GGCAAGTCCGTCAAAGTCCA 60.534 55.000 0.00 0.00 0.00 4.02
33 34 1.235281 GGGCAAGTCCGTCAAAGTCC 61.235 60.000 0.00 0.00 34.94 3.85
34 35 1.566018 CGGGCAAGTCCGTCAAAGTC 61.566 60.000 4.68 0.00 44.60 3.01
35 36 1.597027 CGGGCAAGTCCGTCAAAGT 60.597 57.895 4.68 0.00 44.60 2.66
36 37 3.253955 CGGGCAAGTCCGTCAAAG 58.746 61.111 4.68 0.00 44.60 2.77
43 44 2.408333 CCAATCATCGGGCAAGTCC 58.592 57.895 0.00 0.00 0.00 3.85
50 51 1.111116 ATGGCTTGCCAATCATCGGG 61.111 55.000 18.76 0.00 0.00 5.14
51 52 1.538512 CTATGGCTTGCCAATCATCGG 59.461 52.381 18.76 0.88 0.00 4.18
52 53 2.483106 CTCTATGGCTTGCCAATCATCG 59.517 50.000 18.76 0.00 0.00 3.84
53 54 3.748083 TCTCTATGGCTTGCCAATCATC 58.252 45.455 18.76 0.00 0.00 2.92
54 55 3.870538 TCTCTATGGCTTGCCAATCAT 57.129 42.857 18.76 4.58 0.00 2.45
55 56 3.650281 TTCTCTATGGCTTGCCAATCA 57.350 42.857 18.76 6.15 0.00 2.57
56 57 5.767168 ACTTATTCTCTATGGCTTGCCAATC 59.233 40.000 18.76 0.00 0.00 2.67
57 58 5.533903 CACTTATTCTCTATGGCTTGCCAAT 59.466 40.000 18.76 8.74 0.00 3.16
58 59 4.883585 CACTTATTCTCTATGGCTTGCCAA 59.116 41.667 18.76 7.29 0.00 4.52
59 60 4.454678 CACTTATTCTCTATGGCTTGCCA 58.545 43.478 17.19 17.19 0.00 4.92
60 61 3.817647 CCACTTATTCTCTATGGCTTGCC 59.182 47.826 4.43 4.43 0.00 4.52
61 62 4.708177 TCCACTTATTCTCTATGGCTTGC 58.292 43.478 0.00 0.00 0.00 4.01
62 63 6.767456 AGATCCACTTATTCTCTATGGCTTG 58.233 40.000 0.00 0.00 0.00 4.01
63 64 7.385894 AAGATCCACTTATTCTCTATGGCTT 57.614 36.000 0.00 0.00 37.03 4.35
64 65 7.385894 AAAGATCCACTTATTCTCTATGGCT 57.614 36.000 0.00 0.00 37.93 4.75
65 66 9.213799 CTTAAAGATCCACTTATTCTCTATGGC 57.786 37.037 0.00 0.00 37.93 4.40
75 76 9.883142 CAGTCTTCTTCTTAAAGATCCACTTAT 57.117 33.333 0.00 0.00 41.12 1.73
76 77 8.314751 CCAGTCTTCTTCTTAAAGATCCACTTA 58.685 37.037 0.00 0.00 41.12 2.24
77 78 7.164803 CCAGTCTTCTTCTTAAAGATCCACTT 58.835 38.462 0.00 0.00 41.12 3.16
78 79 6.706295 CCAGTCTTCTTCTTAAAGATCCACT 58.294 40.000 0.00 0.00 41.12 4.00
79 80 5.352846 GCCAGTCTTCTTCTTAAAGATCCAC 59.647 44.000 0.00 0.00 41.12 4.02
80 81 5.491982 GCCAGTCTTCTTCTTAAAGATCCA 58.508 41.667 0.00 0.00 41.12 3.41
81 82 4.568760 CGCCAGTCTTCTTCTTAAAGATCC 59.431 45.833 0.00 0.00 41.12 3.36
82 83 4.033472 GCGCCAGTCTTCTTCTTAAAGATC 59.967 45.833 0.00 0.00 41.12 2.75
83 84 3.935828 GCGCCAGTCTTCTTCTTAAAGAT 59.064 43.478 0.00 0.00 41.12 2.40
84 85 3.326747 GCGCCAGTCTTCTTCTTAAAGA 58.673 45.455 0.00 0.00 39.78 2.52
85 86 2.416893 GGCGCCAGTCTTCTTCTTAAAG 59.583 50.000 24.80 0.00 0.00 1.85
86 87 2.224426 TGGCGCCAGTCTTCTTCTTAAA 60.224 45.455 29.03 0.00 0.00 1.52
87 88 1.346395 TGGCGCCAGTCTTCTTCTTAA 59.654 47.619 29.03 0.00 0.00 1.85
88 89 0.973632 TGGCGCCAGTCTTCTTCTTA 59.026 50.000 29.03 0.00 0.00 2.10
89 90 0.326264 ATGGCGCCAGTCTTCTTCTT 59.674 50.000 35.36 11.04 0.00 2.52
90 91 0.392193 CATGGCGCCAGTCTTCTTCT 60.392 55.000 35.36 11.90 0.00 2.85
91 92 1.372087 CCATGGCGCCAGTCTTCTTC 61.372 60.000 35.36 0.00 0.00 2.87
92 93 1.377725 CCATGGCGCCAGTCTTCTT 60.378 57.895 35.36 13.63 0.00 2.52
93 94 1.264749 TACCATGGCGCCAGTCTTCT 61.265 55.000 35.36 14.49 0.00 2.85
94 95 0.392461 TTACCATGGCGCCAGTCTTC 60.392 55.000 35.36 2.37 0.00 2.87
95 96 0.255890 ATTACCATGGCGCCAGTCTT 59.744 50.000 35.36 20.26 0.00 3.01
96 97 0.464373 CATTACCATGGCGCCAGTCT 60.464 55.000 35.36 20.36 0.00 3.24
97 98 0.748005 ACATTACCATGGCGCCAGTC 60.748 55.000 35.36 4.56 34.27 3.51
98 99 1.031571 CACATTACCATGGCGCCAGT 61.032 55.000 35.36 28.61 34.27 4.00
99 100 0.747644 TCACATTACCATGGCGCCAG 60.748 55.000 35.36 24.28 34.27 4.85
100 101 1.029408 GTCACATTACCATGGCGCCA 61.029 55.000 34.80 34.80 34.27 5.69
101 102 1.724582 GGTCACATTACCATGGCGCC 61.725 60.000 22.73 22.73 39.50 6.53
102 103 0.748005 AGGTCACATTACCATGGCGC 60.748 55.000 13.04 0.00 42.40 6.53
103 104 1.670811 GAAGGTCACATTACCATGGCG 59.329 52.381 13.04 0.00 42.40 5.69
104 105 3.004752 AGAAGGTCACATTACCATGGC 57.995 47.619 13.04 0.00 42.40 4.40
105 106 6.936900 CCTTATAGAAGGTCACATTACCATGG 59.063 42.308 11.19 11.19 46.46 3.66
106 107 7.969536 CCTTATAGAAGGTCACATTACCATG 57.030 40.000 8.05 0.00 46.46 3.66
120 121 3.385577 GACAAGCCGAGCCTTATAGAAG 58.614 50.000 0.00 0.00 0.00 2.85
121 122 2.223735 CGACAAGCCGAGCCTTATAGAA 60.224 50.000 0.00 0.00 0.00 2.10
122 123 1.337071 CGACAAGCCGAGCCTTATAGA 59.663 52.381 0.00 0.00 0.00 1.98
123 124 1.772182 CGACAAGCCGAGCCTTATAG 58.228 55.000 0.00 0.00 0.00 1.31
124 125 0.249322 GCGACAAGCCGAGCCTTATA 60.249 55.000 0.00 0.00 40.81 0.98
125 126 1.521681 GCGACAAGCCGAGCCTTAT 60.522 57.895 0.00 0.00 40.81 1.73
126 127 2.125673 GCGACAAGCCGAGCCTTA 60.126 61.111 0.00 0.00 40.81 2.69
135 136 5.391467 TGTTGATAACCCTTAGCGACAAGC 61.391 45.833 0.00 0.00 41.52 4.01
136 137 4.250464 TGTTGATAACCCTTAGCGACAAG 58.750 43.478 0.00 0.00 41.52 3.16
137 138 4.274602 TGTTGATAACCCTTAGCGACAA 57.725 40.909 0.00 0.00 41.52 3.18
138 139 3.965379 TGTTGATAACCCTTAGCGACA 57.035 42.857 0.00 0.00 42.04 4.35
139 140 4.251268 ACTTGTTGATAACCCTTAGCGAC 58.749 43.478 0.00 0.00 36.65 5.19
140 141 4.546829 ACTTGTTGATAACCCTTAGCGA 57.453 40.909 0.00 0.00 0.00 4.93
141 142 4.693566 TGAACTTGTTGATAACCCTTAGCG 59.306 41.667 0.00 0.00 0.00 4.26
142 143 6.349363 CCTTGAACTTGTTGATAACCCTTAGC 60.349 42.308 0.00 0.00 0.00 3.09
143 144 6.151144 CCCTTGAACTTGTTGATAACCCTTAG 59.849 42.308 0.00 0.00 0.00 2.18
144 145 6.007703 CCCTTGAACTTGTTGATAACCCTTA 58.992 40.000 0.00 0.00 0.00 2.69
145 146 4.832823 CCCTTGAACTTGTTGATAACCCTT 59.167 41.667 0.00 0.00 0.00 3.95
146 147 4.407365 CCCTTGAACTTGTTGATAACCCT 58.593 43.478 0.00 0.00 0.00 4.34
147 148 3.509967 CCCCTTGAACTTGTTGATAACCC 59.490 47.826 0.00 0.00 0.00 4.11
148 149 4.149598 ACCCCTTGAACTTGTTGATAACC 58.850 43.478 0.00 0.00 0.00 2.85
149 150 5.300792 TCAACCCCTTGAACTTGTTGATAAC 59.699 40.000 0.00 0.00 40.06 1.89
150 151 5.300792 GTCAACCCCTTGAACTTGTTGATAA 59.699 40.000 6.65 0.00 44.77 1.75
151 152 4.825085 GTCAACCCCTTGAACTTGTTGATA 59.175 41.667 6.65 0.00 44.77 2.15
152 153 3.636764 GTCAACCCCTTGAACTTGTTGAT 59.363 43.478 6.65 0.00 44.77 2.57
153 154 3.020984 GTCAACCCCTTGAACTTGTTGA 58.979 45.455 0.00 0.00 41.99 3.18
154 155 3.023832 AGTCAACCCCTTGAACTTGTTG 58.976 45.455 0.00 0.00 38.17 3.33
155 156 3.382083 AGTCAACCCCTTGAACTTGTT 57.618 42.857 0.00 0.00 38.17 2.83
156 157 3.201266 TGTAGTCAACCCCTTGAACTTGT 59.799 43.478 0.00 0.00 38.17 3.16
157 158 3.815809 TGTAGTCAACCCCTTGAACTTG 58.184 45.455 0.00 0.00 38.17 3.16
158 159 4.513406 TTGTAGTCAACCCCTTGAACTT 57.487 40.909 0.00 0.00 38.17 2.66
159 160 4.104102 TCATTGTAGTCAACCCCTTGAACT 59.896 41.667 0.00 0.00 38.17 3.01
160 161 4.394729 TCATTGTAGTCAACCCCTTGAAC 58.605 43.478 0.00 0.00 38.17 3.18
161 162 4.349636 TCTCATTGTAGTCAACCCCTTGAA 59.650 41.667 0.00 0.00 38.17 2.69
162 163 3.907474 TCTCATTGTAGTCAACCCCTTGA 59.093 43.478 0.00 0.00 36.33 3.02
163 164 4.003648 GTCTCATTGTAGTCAACCCCTTG 58.996 47.826 0.00 0.00 36.33 3.61
164 165 3.009143 GGTCTCATTGTAGTCAACCCCTT 59.991 47.826 0.00 0.00 36.33 3.95
165 166 2.572104 GGTCTCATTGTAGTCAACCCCT 59.428 50.000 0.00 0.00 36.33 4.79
166 167 2.572104 AGGTCTCATTGTAGTCAACCCC 59.428 50.000 0.00 0.00 36.33 4.95
167 168 3.983044 AGGTCTCATTGTAGTCAACCC 57.017 47.619 0.00 0.00 36.33 4.11
168 169 5.153950 AGAAGGTCTCATTGTAGTCAACC 57.846 43.478 0.00 0.00 36.33 3.77
181 182 0.456628 GCTACGGGTGAGAAGGTCTC 59.543 60.000 0.00 0.00 43.65 3.36
182 183 1.313812 CGCTACGGGTGAGAAGGTCT 61.314 60.000 0.00 0.00 0.00 3.85
183 184 1.139095 CGCTACGGGTGAGAAGGTC 59.861 63.158 0.00 0.00 0.00 3.85
184 185 0.896940 TTCGCTACGGGTGAGAAGGT 60.897 55.000 0.00 0.00 35.73 3.50
185 186 0.179134 CTTCGCTACGGGTGAGAAGG 60.179 60.000 9.06 0.00 35.84 3.46
186 187 0.802607 GCTTCGCTACGGGTGAGAAG 60.803 60.000 11.42 11.42 40.69 2.85
187 188 1.214589 GCTTCGCTACGGGTGAGAA 59.785 57.895 0.00 0.00 35.73 2.87
188 189 0.393402 TAGCTTCGCTACGGGTGAGA 60.393 55.000 0.00 0.00 40.44 3.27
189 190 0.454600 TTAGCTTCGCTACGGGTGAG 59.545 55.000 0.00 0.00 41.12 3.51
190 191 0.889994 TTTAGCTTCGCTACGGGTGA 59.110 50.000 0.00 0.00 41.12 4.02
191 192 1.278238 CTTTAGCTTCGCTACGGGTG 58.722 55.000 0.00 0.00 41.12 4.61
192 193 0.893447 ACTTTAGCTTCGCTACGGGT 59.107 50.000 0.00 0.00 41.12 5.28
193 194 1.557651 GACTTTAGCTTCGCTACGGG 58.442 55.000 0.00 0.00 41.12 5.28
194 195 1.557651 GGACTTTAGCTTCGCTACGG 58.442 55.000 0.00 0.00 41.12 4.02
195 196 1.189403 CGGACTTTAGCTTCGCTACG 58.811 55.000 0.00 0.00 41.12 3.51
196 197 2.159407 AGACGGACTTTAGCTTCGCTAC 60.159 50.000 0.00 0.00 41.12 3.58
197 198 2.089980 AGACGGACTTTAGCTTCGCTA 58.910 47.619 0.00 0.00 40.44 4.26
198 199 0.889306 AGACGGACTTTAGCTTCGCT 59.111 50.000 0.00 0.00 43.41 4.93
199 200 0.992802 CAGACGGACTTTAGCTTCGC 59.007 55.000 0.00 0.00 0.00 4.70
200 201 2.631418 TCAGACGGACTTTAGCTTCG 57.369 50.000 0.00 0.00 0.00 3.79
201 202 6.535508 ACATAATTCAGACGGACTTTAGCTTC 59.464 38.462 0.00 0.00 0.00 3.86
202 203 6.407202 ACATAATTCAGACGGACTTTAGCTT 58.593 36.000 0.00 0.00 0.00 3.74
203 204 5.978814 ACATAATTCAGACGGACTTTAGCT 58.021 37.500 0.00 0.00 0.00 3.32
204 205 6.663944 AACATAATTCAGACGGACTTTAGC 57.336 37.500 0.00 0.00 0.00 3.09
205 206 7.491372 TGCTAACATAATTCAGACGGACTTTAG 59.509 37.037 0.00 0.00 0.00 1.85
206 207 7.324935 TGCTAACATAATTCAGACGGACTTTA 58.675 34.615 0.00 0.00 0.00 1.85
207 208 6.170506 TGCTAACATAATTCAGACGGACTTT 58.829 36.000 0.00 0.00 0.00 2.66
208 209 5.730550 TGCTAACATAATTCAGACGGACTT 58.269 37.500 0.00 0.00 0.00 3.01
209 210 5.339008 TGCTAACATAATTCAGACGGACT 57.661 39.130 0.00 0.00 0.00 3.85
210 211 6.604735 ATTGCTAACATAATTCAGACGGAC 57.395 37.500 0.00 0.00 0.00 4.79
211 212 6.458206 GCAATTGCTAACATAATTCAGACGGA 60.458 38.462 23.21 0.00 38.21 4.69
212 213 5.682862 GCAATTGCTAACATAATTCAGACGG 59.317 40.000 23.21 0.00 38.21 4.79
213 214 6.722972 GCAATTGCTAACATAATTCAGACG 57.277 37.500 23.21 0.00 38.21 4.18
230 231 8.512138 TCTCATAATCATAGAATGCAGCAATTG 58.488 33.333 0.00 0.00 0.00 2.32
231 232 8.631480 TCTCATAATCATAGAATGCAGCAATT 57.369 30.769 0.00 0.00 0.00 2.32
232 233 8.809468 ATCTCATAATCATAGAATGCAGCAAT 57.191 30.769 0.00 0.00 0.00 3.56
233 234 8.101419 AGATCTCATAATCATAGAATGCAGCAA 58.899 33.333 0.00 0.00 0.00 3.91
234 235 7.549488 CAGATCTCATAATCATAGAATGCAGCA 59.451 37.037 0.00 0.00 0.00 4.41
235 236 7.011576 CCAGATCTCATAATCATAGAATGCAGC 59.988 40.741 0.00 0.00 0.00 5.25
236 237 7.011576 GCCAGATCTCATAATCATAGAATGCAG 59.988 40.741 0.00 0.00 0.00 4.41
237 238 6.822170 GCCAGATCTCATAATCATAGAATGCA 59.178 38.462 0.00 0.00 0.00 3.96
238 239 6.822170 TGCCAGATCTCATAATCATAGAATGC 59.178 38.462 0.00 0.00 0.00 3.56
239 240 8.788325 TTGCCAGATCTCATAATCATAGAATG 57.212 34.615 0.00 0.00 0.00 2.67
240 241 9.976776 ATTTGCCAGATCTCATAATCATAGAAT 57.023 29.630 0.00 0.00 0.00 2.40
241 242 9.227777 CATTTGCCAGATCTCATAATCATAGAA 57.772 33.333 0.00 0.00 0.00 2.10
242 243 7.827729 CCATTTGCCAGATCTCATAATCATAGA 59.172 37.037 0.00 0.00 0.00 1.98
243 244 7.827729 TCCATTTGCCAGATCTCATAATCATAG 59.172 37.037 0.00 0.00 0.00 2.23
244 245 7.609146 GTCCATTTGCCAGATCTCATAATCATA 59.391 37.037 0.00 0.00 0.00 2.15
245 246 6.433404 GTCCATTTGCCAGATCTCATAATCAT 59.567 38.462 0.00 0.00 0.00 2.45
246 247 5.766670 GTCCATTTGCCAGATCTCATAATCA 59.233 40.000 0.00 0.00 0.00 2.57
247 248 5.106791 CGTCCATTTGCCAGATCTCATAATC 60.107 44.000 0.00 0.00 0.00 1.75
248 249 4.758674 CGTCCATTTGCCAGATCTCATAAT 59.241 41.667 0.00 0.00 0.00 1.28
249 250 4.129380 CGTCCATTTGCCAGATCTCATAA 58.871 43.478 0.00 0.00 0.00 1.90
250 251 3.134623 ACGTCCATTTGCCAGATCTCATA 59.865 43.478 0.00 0.00 0.00 2.15
251 252 2.092753 ACGTCCATTTGCCAGATCTCAT 60.093 45.455 0.00 0.00 0.00 2.90
252 253 1.278985 ACGTCCATTTGCCAGATCTCA 59.721 47.619 0.00 0.00 0.00 3.27
253 254 1.936547 GACGTCCATTTGCCAGATCTC 59.063 52.381 3.51 0.00 0.00 2.75
254 255 1.278985 TGACGTCCATTTGCCAGATCT 59.721 47.619 14.12 0.00 0.00 2.75
255 256 1.737838 TGACGTCCATTTGCCAGATC 58.262 50.000 14.12 0.00 0.00 2.75
256 257 2.198827 TTGACGTCCATTTGCCAGAT 57.801 45.000 14.12 0.00 0.00 2.90
257 258 1.974265 TTTGACGTCCATTTGCCAGA 58.026 45.000 14.12 0.00 0.00 3.86
258 259 2.223688 TGTTTTGACGTCCATTTGCCAG 60.224 45.455 14.12 0.00 0.00 4.85
259 260 1.751351 TGTTTTGACGTCCATTTGCCA 59.249 42.857 14.12 0.00 0.00 4.92
260 261 2.500509 TGTTTTGACGTCCATTTGCC 57.499 45.000 14.12 0.00 0.00 4.52
261 262 3.182967 TGTTGTTTTGACGTCCATTTGC 58.817 40.909 14.12 0.00 0.00 3.68
262 263 5.051106 GGAATGTTGTTTTGACGTCCATTTG 60.051 40.000 14.12 0.00 0.00 2.32
263 264 5.047188 GGAATGTTGTTTTGACGTCCATTT 58.953 37.500 14.12 0.00 0.00 2.32
264 265 4.340950 AGGAATGTTGTTTTGACGTCCATT 59.659 37.500 14.12 12.82 0.00 3.16
265 266 3.888930 AGGAATGTTGTTTTGACGTCCAT 59.111 39.130 14.12 4.21 0.00 3.41
266 267 3.283751 AGGAATGTTGTTTTGACGTCCA 58.716 40.909 14.12 0.00 0.00 4.02
267 268 3.982576 AGGAATGTTGTTTTGACGTCC 57.017 42.857 14.12 0.00 0.00 4.79
268 269 7.320499 CATTAAGGAATGTTGTTTTGACGTC 57.680 36.000 9.11 9.11 38.13 4.34
295 296 8.531982 CATCATATAGAAATCGTCCTTAAGGGA 58.468 37.037 21.53 11.99 42.77 4.20
296 297 7.278868 GCATCATATAGAAATCGTCCTTAAGGG 59.721 40.741 21.53 6.55 35.41 3.95
297 298 7.819415 TGCATCATATAGAAATCGTCCTTAAGG 59.181 37.037 15.98 15.98 0.00 2.69
298 299 8.763049 TGCATCATATAGAAATCGTCCTTAAG 57.237 34.615 0.00 0.00 0.00 1.85
299 300 9.371136 GATGCATCATATAGAAATCGTCCTTAA 57.629 33.333 21.92 0.00 0.00 1.85
300 301 7.981789 GGATGCATCATATAGAAATCGTCCTTA 59.018 37.037 27.25 0.00 31.64 2.69
301 302 6.820656 GGATGCATCATATAGAAATCGTCCTT 59.179 38.462 27.25 0.00 31.64 3.36
302 303 6.070596 TGGATGCATCATATAGAAATCGTCCT 60.071 38.462 27.25 0.00 33.63 3.85
303 304 6.108687 TGGATGCATCATATAGAAATCGTCC 58.891 40.000 27.25 6.95 33.35 4.79
304 305 7.038048 TCTGGATGCATCATATAGAAATCGTC 58.962 38.462 27.25 6.01 0.00 4.20
305 306 6.939622 TCTGGATGCATCATATAGAAATCGT 58.060 36.000 27.25 0.00 0.00 3.73
306 307 7.011202 CCTTCTGGATGCATCATATAGAAATCG 59.989 40.741 27.25 16.34 30.90 3.34
307 308 7.828223 ACCTTCTGGATGCATCATATAGAAATC 59.172 37.037 27.25 7.12 37.04 2.17
308 309 7.696981 ACCTTCTGGATGCATCATATAGAAAT 58.303 34.615 27.25 16.39 37.04 2.17
309 310 7.083062 ACCTTCTGGATGCATCATATAGAAA 57.917 36.000 27.25 10.42 37.04 2.52
310 311 6.692849 ACCTTCTGGATGCATCATATAGAA 57.307 37.500 27.25 24.22 37.04 2.10
311 312 6.692849 AACCTTCTGGATGCATCATATAGA 57.307 37.500 27.25 19.81 37.04 1.98
312 313 7.230108 ACAAAACCTTCTGGATGCATCATATAG 59.770 37.037 27.25 18.08 37.04 1.31
313 314 7.062322 ACAAAACCTTCTGGATGCATCATATA 58.938 34.615 27.25 10.01 37.04 0.86
314 315 5.895534 ACAAAACCTTCTGGATGCATCATAT 59.104 36.000 27.25 3.30 37.04 1.78
315 316 5.263599 ACAAAACCTTCTGGATGCATCATA 58.736 37.500 27.25 14.80 37.04 2.15
316 317 4.091549 ACAAAACCTTCTGGATGCATCAT 58.908 39.130 27.25 0.00 37.04 2.45
317 318 3.499338 ACAAAACCTTCTGGATGCATCA 58.501 40.909 27.25 12.90 37.04 3.07
318 319 3.426695 CGACAAAACCTTCTGGATGCATC 60.427 47.826 18.81 18.81 37.04 3.91
319 320 2.489329 CGACAAAACCTTCTGGATGCAT 59.511 45.455 0.00 0.00 37.04 3.96
320 321 1.879380 CGACAAAACCTTCTGGATGCA 59.121 47.619 0.00 0.00 37.04 3.96
321 322 2.151202 TCGACAAAACCTTCTGGATGC 58.849 47.619 0.00 0.00 37.04 3.91
322 323 3.375299 GGATCGACAAAACCTTCTGGATG 59.625 47.826 0.00 0.00 37.04 3.51
323 324 3.264450 AGGATCGACAAAACCTTCTGGAT 59.736 43.478 0.00 0.00 37.04 3.41
324 325 2.637872 AGGATCGACAAAACCTTCTGGA 59.362 45.455 0.00 0.00 37.04 3.86
325 326 3.059352 AGGATCGACAAAACCTTCTGG 57.941 47.619 0.00 0.00 39.83 3.86
326 327 5.479306 TCTTAGGATCGACAAAACCTTCTG 58.521 41.667 0.00 0.00 34.42 3.02
327 328 5.740290 TCTTAGGATCGACAAAACCTTCT 57.260 39.130 0.00 0.00 34.42 2.85
328 329 6.675728 GCATTCTTAGGATCGACAAAACCTTC 60.676 42.308 0.00 0.00 34.42 3.46
329 330 5.123979 GCATTCTTAGGATCGACAAAACCTT 59.876 40.000 0.00 0.00 34.42 3.50
330 331 4.636206 GCATTCTTAGGATCGACAAAACCT 59.364 41.667 0.00 0.00 36.65 3.50
331 332 4.636206 AGCATTCTTAGGATCGACAAAACC 59.364 41.667 0.00 0.00 0.00 3.27
332 333 5.447818 CCAGCATTCTTAGGATCGACAAAAC 60.448 44.000 0.00 0.00 0.00 2.43
333 334 4.635765 CCAGCATTCTTAGGATCGACAAAA 59.364 41.667 0.00 0.00 0.00 2.44
334 335 4.191544 CCAGCATTCTTAGGATCGACAAA 58.808 43.478 0.00 0.00 0.00 2.83
335 336 3.797039 CCAGCATTCTTAGGATCGACAA 58.203 45.455 0.00 0.00 0.00 3.18
336 337 2.483714 GCCAGCATTCTTAGGATCGACA 60.484 50.000 0.00 0.00 0.00 4.35
337 338 2.139118 GCCAGCATTCTTAGGATCGAC 58.861 52.381 0.00 0.00 0.00 4.20
338 339 1.762370 TGCCAGCATTCTTAGGATCGA 59.238 47.619 0.00 0.00 0.00 3.59
339 340 2.245159 TGCCAGCATTCTTAGGATCG 57.755 50.000 0.00 0.00 0.00 3.69
340 341 3.813443 TCTTGCCAGCATTCTTAGGATC 58.187 45.455 0.00 0.00 0.00 3.36
341 342 3.201708 ACTCTTGCCAGCATTCTTAGGAT 59.798 43.478 0.00 0.00 0.00 3.24
342 343 2.573462 ACTCTTGCCAGCATTCTTAGGA 59.427 45.455 0.00 0.00 0.00 2.94
343 344 2.681848 CACTCTTGCCAGCATTCTTAGG 59.318 50.000 0.00 0.00 0.00 2.69
344 345 2.097142 GCACTCTTGCCAGCATTCTTAG 59.903 50.000 0.00 0.00 43.66 2.18
345 346 2.086869 GCACTCTTGCCAGCATTCTTA 58.913 47.619 0.00 0.00 43.66 2.10
346 347 0.886563 GCACTCTTGCCAGCATTCTT 59.113 50.000 0.00 0.00 43.66 2.52
347 348 2.564471 GCACTCTTGCCAGCATTCT 58.436 52.632 0.00 0.00 43.66 2.40
357 358 1.651240 CCCTTCCGCATGCACTCTTG 61.651 60.000 19.57 0.00 0.00 3.02
358 359 1.377725 CCCTTCCGCATGCACTCTT 60.378 57.895 19.57 0.00 0.00 2.85
359 360 2.270205 CCCTTCCGCATGCACTCT 59.730 61.111 19.57 0.00 0.00 3.24
360 361 2.825836 CCCCTTCCGCATGCACTC 60.826 66.667 19.57 0.00 0.00 3.51
411 412 1.517832 CGAAGGGAATGAGCTCGGT 59.482 57.895 9.64 0.00 0.00 4.69
927 939 6.051717 CCGTGTTTGATCTTATCCATCTCTT 58.948 40.000 0.00 0.00 0.00 2.85
1339 1351 2.573462 AGATGGAGCACTGGAGCTTTTA 59.427 45.455 0.00 0.00 46.75 1.52
1340 1352 1.353694 AGATGGAGCACTGGAGCTTTT 59.646 47.619 0.00 0.00 46.75 2.27
1341 1353 0.990374 AGATGGAGCACTGGAGCTTT 59.010 50.000 0.00 0.00 46.75 3.51
1368 1380 0.322975 AACTCCGAGATGCTTGCACT 59.677 50.000 1.33 0.00 0.00 4.40
1667 1680 8.485976 ACTTCTTCAATATCTTGTCAAGCTAC 57.514 34.615 7.78 0.00 33.87 3.58
1670 1683 7.810658 TGAACTTCTTCAATATCTTGTCAAGC 58.189 34.615 7.78 0.00 33.20 4.01
1743 1756 2.033299 GGCATTAAGCTGCGCTCAATTA 59.967 45.455 9.73 0.00 43.23 1.40
1822 1841 7.282585 ACACAACATGGCATACATAATAGAGT 58.717 34.615 0.00 0.00 37.84 3.24
1919 1938 7.166167 ACTTCAGGTTATTCTTGACCGTTATT 58.834 34.615 0.00 0.00 40.89 1.40
1936 1955 3.166679 GTCCTTCTCAGGTACTTCAGGT 58.833 50.000 0.00 0.00 41.69 4.00
1980 1999 2.107204 ACATGAACTCTTTGGCACCTCT 59.893 45.455 0.00 0.00 0.00 3.69
1995 2014 4.517952 TCGACGTAACCCTTTACATGAA 57.482 40.909 0.00 0.00 37.99 2.57
2058 2078 8.783093 CACCATTCAAAATATACACGTATCCAT 58.217 33.333 0.00 0.00 0.00 3.41
2127 2149 1.482182 ACTCCGCTTCACATGCAGATA 59.518 47.619 0.00 0.00 0.00 1.98
2132 2154 1.656652 ATGTACTCCGCTTCACATGC 58.343 50.000 0.00 0.00 30.64 4.06
2162 2184 3.808728 AGACTGCTTCTTGTGTTGCTTA 58.191 40.909 0.00 0.00 0.00 3.09
2168 2190 5.474578 TTCATCTAGACTGCTTCTTGTGT 57.525 39.130 0.00 0.00 35.55 3.72


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.