Multiple sequence alignment - TraesCS5B01G548100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G548100 chr5B 100.000 3732 0 0 1 3732 700857601 700853870 0.000000e+00 6892.0
1 TraesCS5B01G548100 chr5B 81.592 1646 245 44 1109 2743 701051702 701050104 0.000000e+00 1308.0
2 TraesCS5B01G548100 chr5B 96.443 759 19 7 2805 3556 38108089 38107332 0.000000e+00 1245.0
3 TraesCS5B01G548100 chr5B 96.053 760 28 2 2806 3564 696318560 696319318 0.000000e+00 1236.0
4 TraesCS5B01G548100 chr5B 95.046 767 24 10 2799 3556 76742590 76741829 0.000000e+00 1194.0
5 TraesCS5B01G548100 chr5D 92.170 2286 114 19 553 2806 549230258 549228006 0.000000e+00 3169.0
6 TraesCS5B01G548100 chr5D 91.110 2261 131 22 577 2806 549262544 549260323 0.000000e+00 2998.0
7 TraesCS5B01G548100 chr5D 82.482 1644 233 38 1109 2743 549548153 549546556 0.000000e+00 1389.0
8 TraesCS5B01G548100 chr5D 85.981 856 103 12 1109 1963 549430068 549429229 0.000000e+00 900.0
9 TraesCS5B01G548100 chr4A 90.969 2259 137 20 577 2806 620705134 620702914 0.000000e+00 2979.0
10 TraesCS5B01G548100 chr4A 85.714 168 5 5 18 167 620706068 620705902 3.860000e-35 159.0
11 TraesCS5B01G548100 chr4A 100.000 71 0 0 3662 3732 721955932 721955862 8.410000e-27 132.0
12 TraesCS5B01G548100 chrUn 95.607 865 27 8 2806 3660 2754441 2753578 0.000000e+00 1376.0
13 TraesCS5B01G548100 chrUn 94.538 769 26 10 2799 3556 47438482 47439245 0.000000e+00 1173.0
14 TraesCS5B01G548100 chrUn 100.000 71 0 0 3662 3732 51399561 51399631 8.410000e-27 132.0
15 TraesCS5B01G548100 chrUn 100.000 71 0 0 3662 3732 278329323 278329253 8.410000e-27 132.0
16 TraesCS5B01G548100 chr6B 97.305 742 17 3 2806 3547 18257310 18256572 0.000000e+00 1256.0
17 TraesCS5B01G548100 chr6B 96.189 761 20 8 2802 3556 936659 935902 0.000000e+00 1236.0
18 TraesCS5B01G548100 chr6B 100.000 71 0 0 3662 3732 6446701 6446771 8.410000e-27 132.0
19 TraesCS5B01G548100 chr6B 100.000 71 0 0 3662 3732 11818083 11818153 8.410000e-27 132.0
20 TraesCS5B01G548100 chr1B 96.556 755 21 4 2806 3556 12682756 12683509 0.000000e+00 1245.0
21 TraesCS5B01G548100 chr1B 95.306 767 21 10 2800 3556 180092484 180091723 0.000000e+00 1203.0
22 TraesCS5B01G548100 chr1B 100.000 71 0 0 3662 3732 677245377 677245307 8.410000e-27 132.0
23 TraesCS5B01G548100 chr2B 96.547 753 20 5 2806 3554 71684129 71683379 0.000000e+00 1242.0
24 TraesCS5B01G548100 chr2B 93.971 763 32 10 2805 3556 781463724 781462965 0.000000e+00 1142.0
25 TraesCS5B01G548100 chr2B 84.357 863 111 13 1109 1969 159971028 159970188 0.000000e+00 824.0
26 TraesCS5B01G548100 chr3B 96.311 759 21 5 2802 3556 814112765 814113520 0.000000e+00 1240.0
27 TraesCS5B01G548100 chr3B 100.000 71 0 0 3662 3732 807986285 807986355 8.410000e-27 132.0
28 TraesCS5B01G548100 chr1A 92.767 871 42 6 2805 3660 23350091 23350955 0.000000e+00 1240.0
29 TraesCS5B01G548100 chr4B 95.573 768 21 10 2798 3554 475143241 475142476 0.000000e+00 1218.0
30 TraesCS5B01G548100 chr4B 93.720 621 14 12 3051 3660 654946112 654945506 0.000000e+00 907.0
31 TraesCS5B01G548100 chr4B 91.779 596 24 3 3074 3660 663693015 663693594 0.000000e+00 806.0
32 TraesCS5B01G548100 chr7B 92.601 865 30 13 2805 3660 59028943 59029782 0.000000e+00 1212.0
33 TraesCS5B01G548100 chr7B 100.000 71 0 0 3662 3732 741789965 741789895 8.410000e-27 132.0
34 TraesCS5B01G548100 chr6A 90.261 842 45 7 2805 3625 11540180 11541005 0.000000e+00 1066.0
35 TraesCS5B01G548100 chr7A 91.829 771 43 8 2798 3556 73789093 73788331 0.000000e+00 1057.0
36 TraesCS5B01G548100 chr7A 85.121 867 118 8 1103 1959 163617765 163616900 0.000000e+00 876.0
37 TraesCS5B01G548100 chr3A 91.310 771 36 15 2799 3556 58895565 58896317 0.000000e+00 1024.0
38 TraesCS5B01G548100 chr4D 90.420 762 48 17 2806 3556 466008231 466007484 0.000000e+00 979.0
39 TraesCS5B01G548100 chr2A 88.220 764 63 18 2804 3556 529570427 529569680 0.000000e+00 887.0
40 TraesCS5B01G548100 chr2A 84.357 863 111 14 1109 1969 107182762 107181922 0.000000e+00 824.0
41 TraesCS5B01G548100 chr2A 90.017 581 18 6 3091 3660 754199637 754200188 0.000000e+00 715.0
42 TraesCS5B01G548100 chr2A 88.265 588 31 8 3088 3660 702361672 702362236 0.000000e+00 669.0
43 TraesCS5B01G548100 chr2A 100.000 71 0 0 3662 3732 764596771 764596841 8.410000e-27 132.0
44 TraesCS5B01G548100 chr2A 80.000 105 20 1 364 467 668085563 668085667 4.000000e-10 76.8
45 TraesCS5B01G548100 chr7D 85.287 870 113 11 1103 1959 162823654 162822787 0.000000e+00 883.0
46 TraesCS5B01G548100 chr2D 84.936 863 106 15 1109 1969 110843195 110842355 0.000000e+00 852.0
47 TraesCS5B01G548100 chr2D 83.871 124 13 6 381 501 548739971 548740090 1.100000e-20 111.0
48 TraesCS5B01G548100 chr5A 90.103 485 13 6 3185 3660 646594762 646594304 6.900000e-167 597.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G548100 chr5B 700853870 700857601 3731 True 6892 6892 100.0000 1 3732 1 chr5B.!!$R3 3731
1 TraesCS5B01G548100 chr5B 701050104 701051702 1598 True 1308 1308 81.5920 1109 2743 1 chr5B.!!$R4 1634
2 TraesCS5B01G548100 chr5B 38107332 38108089 757 True 1245 1245 96.4430 2805 3556 1 chr5B.!!$R1 751
3 TraesCS5B01G548100 chr5B 696318560 696319318 758 False 1236 1236 96.0530 2806 3564 1 chr5B.!!$F1 758
4 TraesCS5B01G548100 chr5B 76741829 76742590 761 True 1194 1194 95.0460 2799 3556 1 chr5B.!!$R2 757
5 TraesCS5B01G548100 chr5D 549228006 549230258 2252 True 3169 3169 92.1700 553 2806 1 chr5D.!!$R1 2253
6 TraesCS5B01G548100 chr5D 549260323 549262544 2221 True 2998 2998 91.1100 577 2806 1 chr5D.!!$R2 2229
7 TraesCS5B01G548100 chr5D 549546556 549548153 1597 True 1389 1389 82.4820 1109 2743 1 chr5D.!!$R4 1634
8 TraesCS5B01G548100 chr5D 549429229 549430068 839 True 900 900 85.9810 1109 1963 1 chr5D.!!$R3 854
9 TraesCS5B01G548100 chr4A 620702914 620706068 3154 True 1569 2979 88.3415 18 2806 2 chr4A.!!$R2 2788
10 TraesCS5B01G548100 chrUn 2753578 2754441 863 True 1376 1376 95.6070 2806 3660 1 chrUn.!!$R1 854
11 TraesCS5B01G548100 chrUn 47438482 47439245 763 False 1173 1173 94.5380 2799 3556 1 chrUn.!!$F1 757
12 TraesCS5B01G548100 chr6B 18256572 18257310 738 True 1256 1256 97.3050 2806 3547 1 chr6B.!!$R2 741
13 TraesCS5B01G548100 chr6B 935902 936659 757 True 1236 1236 96.1890 2802 3556 1 chr6B.!!$R1 754
14 TraesCS5B01G548100 chr1B 12682756 12683509 753 False 1245 1245 96.5560 2806 3556 1 chr1B.!!$F1 750
15 TraesCS5B01G548100 chr1B 180091723 180092484 761 True 1203 1203 95.3060 2800 3556 1 chr1B.!!$R1 756
16 TraesCS5B01G548100 chr2B 71683379 71684129 750 True 1242 1242 96.5470 2806 3554 1 chr2B.!!$R1 748
17 TraesCS5B01G548100 chr2B 781462965 781463724 759 True 1142 1142 93.9710 2805 3556 1 chr2B.!!$R3 751
18 TraesCS5B01G548100 chr2B 159970188 159971028 840 True 824 824 84.3570 1109 1969 1 chr2B.!!$R2 860
19 TraesCS5B01G548100 chr3B 814112765 814113520 755 False 1240 1240 96.3110 2802 3556 1 chr3B.!!$F2 754
20 TraesCS5B01G548100 chr1A 23350091 23350955 864 False 1240 1240 92.7670 2805 3660 1 chr1A.!!$F1 855
21 TraesCS5B01G548100 chr4B 475142476 475143241 765 True 1218 1218 95.5730 2798 3554 1 chr4B.!!$R1 756
22 TraesCS5B01G548100 chr4B 654945506 654946112 606 True 907 907 93.7200 3051 3660 1 chr4B.!!$R2 609
23 TraesCS5B01G548100 chr4B 663693015 663693594 579 False 806 806 91.7790 3074 3660 1 chr4B.!!$F1 586
24 TraesCS5B01G548100 chr7B 59028943 59029782 839 False 1212 1212 92.6010 2805 3660 1 chr7B.!!$F1 855
25 TraesCS5B01G548100 chr6A 11540180 11541005 825 False 1066 1066 90.2610 2805 3625 1 chr6A.!!$F1 820
26 TraesCS5B01G548100 chr7A 73788331 73789093 762 True 1057 1057 91.8290 2798 3556 1 chr7A.!!$R1 758
27 TraesCS5B01G548100 chr7A 163616900 163617765 865 True 876 876 85.1210 1103 1959 1 chr7A.!!$R2 856
28 TraesCS5B01G548100 chr3A 58895565 58896317 752 False 1024 1024 91.3100 2799 3556 1 chr3A.!!$F1 757
29 TraesCS5B01G548100 chr4D 466007484 466008231 747 True 979 979 90.4200 2806 3556 1 chr4D.!!$R1 750
30 TraesCS5B01G548100 chr2A 529569680 529570427 747 True 887 887 88.2200 2804 3556 1 chr2A.!!$R2 752
31 TraesCS5B01G548100 chr2A 107181922 107182762 840 True 824 824 84.3570 1109 1969 1 chr2A.!!$R1 860
32 TraesCS5B01G548100 chr2A 754199637 754200188 551 False 715 715 90.0170 3091 3660 1 chr2A.!!$F3 569
33 TraesCS5B01G548100 chr2A 702361672 702362236 564 False 669 669 88.2650 3088 3660 1 chr2A.!!$F2 572
34 TraesCS5B01G548100 chr7D 162822787 162823654 867 True 883 883 85.2870 1103 1959 1 chr7D.!!$R1 856
35 TraesCS5B01G548100 chr2D 110842355 110843195 840 True 852 852 84.9360 1109 1969 1 chr2D.!!$R1 860

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
65 66 0.036483 CCATGTCGTGTGGACCATGA 60.036 55.0 0.00 0.00 45.46 3.07 F
306 346 0.037326 CAGAAGGTGCGCTGGTTCTA 60.037 55.0 9.73 0.00 0.00 2.10 F
307 347 0.247736 AGAAGGTGCGCTGGTTCTAG 59.752 55.0 9.73 0.00 0.00 2.43 F
383 423 0.249657 GATGAGGGTGATGCGTCTCC 60.250 60.0 17.11 17.11 37.30 3.71 F
1741 2436 0.264955 ATCCGACTACCTCCCATGGT 59.735 55.0 11.73 0.00 43.66 3.55 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1758 2453 0.178767 CCATCTTCTCATGGCCGTCA 59.821 55.0 0.00 0.0 37.12 4.35 R
2005 2700 0.464554 TGTGTGACATTCGTTGGCCA 60.465 50.0 0.00 0.0 29.16 5.36 R
2072 2773 0.610687 TACCATGTCATGCCACGTCA 59.389 50.0 7.35 0.0 0.00 4.35 R
2073 2774 1.290203 CTACCATGTCATGCCACGTC 58.710 55.0 7.35 0.0 0.00 4.34 R
3664 4481 0.249489 AGACGAAGCACAAGAAGCGT 60.249 50.0 0.00 0.0 37.01 5.07 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
59 60 4.386951 CCGGCCATGTCGTGTGGA 62.387 66.667 2.24 0.00 39.12 4.02
60 61 3.118454 CGGCCATGTCGTGTGGAC 61.118 66.667 2.24 3.92 46.27 4.02
61 62 2.746277 GGCCATGTCGTGTGGACC 60.746 66.667 0.00 5.02 45.46 4.46
62 63 2.031919 GCCATGTCGTGTGGACCA 59.968 61.111 7.49 0.00 45.46 4.02
63 64 1.377202 GCCATGTCGTGTGGACCAT 60.377 57.895 0.00 0.00 45.46 3.55
64 65 1.647545 GCCATGTCGTGTGGACCATG 61.648 60.000 0.00 0.00 45.46 3.66
65 66 0.036483 CCATGTCGTGTGGACCATGA 60.036 55.000 0.00 0.00 45.46 3.07
66 67 1.407299 CCATGTCGTGTGGACCATGAT 60.407 52.381 0.00 0.00 45.46 2.45
68 69 0.673333 TGTCGTGTGGACCATGATGC 60.673 55.000 0.00 0.00 45.46 3.91
176 216 2.827652 GCCTCTAGCTACATGGACAAC 58.172 52.381 0.00 0.00 38.99 3.32
179 219 4.184629 CCTCTAGCTACATGGACAACAAC 58.815 47.826 0.00 0.00 0.00 3.32
181 221 5.073311 TCTAGCTACATGGACAACAACTC 57.927 43.478 0.00 0.00 0.00 3.01
183 223 4.085357 AGCTACATGGACAACAACTCAA 57.915 40.909 0.00 0.00 0.00 3.02
184 224 3.815401 AGCTACATGGACAACAACTCAAC 59.185 43.478 0.00 0.00 0.00 3.18
188 228 4.389374 ACATGGACAACAACTCAACTAGG 58.611 43.478 0.00 0.00 0.00 3.02
190 230 5.071250 ACATGGACAACAACTCAACTAGGTA 59.929 40.000 0.00 0.00 0.00 3.08
193 233 6.931838 TGGACAACAACTCAACTAGGTATAG 58.068 40.000 0.00 0.00 34.96 1.31
194 234 6.070995 TGGACAACAACTCAACTAGGTATAGG 60.071 42.308 0.00 0.00 32.90 2.57
195 235 6.070938 GGACAACAACTCAACTAGGTATAGGT 60.071 42.308 0.00 0.00 32.90 3.08
260 300 9.010029 ACTACAAAAACATCTTACATTACCCTG 57.990 33.333 0.00 0.00 0.00 4.45
261 301 6.687604 ACAAAAACATCTTACATTACCCTGC 58.312 36.000 0.00 0.00 0.00 4.85
262 302 6.266558 ACAAAAACATCTTACATTACCCTGCA 59.733 34.615 0.00 0.00 0.00 4.41
263 303 6.909550 AAAACATCTTACATTACCCTGCAA 57.090 33.333 0.00 0.00 0.00 4.08
264 304 6.515272 AAACATCTTACATTACCCTGCAAG 57.485 37.500 0.00 0.00 0.00 4.01
265 305 5.435686 ACATCTTACATTACCCTGCAAGA 57.564 39.130 0.00 0.00 34.03 3.02
266 306 5.815581 ACATCTTACATTACCCTGCAAGAA 58.184 37.500 0.00 0.00 33.41 2.52
267 307 6.245408 ACATCTTACATTACCCTGCAAGAAA 58.755 36.000 0.00 0.00 33.41 2.52
268 308 6.719370 ACATCTTACATTACCCTGCAAGAAAA 59.281 34.615 0.00 0.00 33.41 2.29
269 309 6.817765 TCTTACATTACCCTGCAAGAAAAG 57.182 37.500 0.00 0.00 34.07 2.27
270 310 5.710099 TCTTACATTACCCTGCAAGAAAAGG 59.290 40.000 0.00 0.00 34.07 3.11
284 324 6.089249 CAAGAAAAGGGTCTTGCATTAAGT 57.911 37.500 2.26 0.00 45.84 2.24
285 325 6.515832 CAAGAAAAGGGTCTTGCATTAAGTT 58.484 36.000 2.26 0.00 45.84 2.66
286 326 7.657336 CAAGAAAAGGGTCTTGCATTAAGTTA 58.343 34.615 2.26 0.00 45.84 2.24
287 327 7.215719 AGAAAAGGGTCTTGCATTAAGTTAC 57.784 36.000 0.00 0.00 37.65 2.50
288 328 6.775629 AGAAAAGGGTCTTGCATTAAGTTACA 59.224 34.615 0.00 0.00 37.65 2.41
289 329 6.575162 AAAGGGTCTTGCATTAAGTTACAG 57.425 37.500 0.00 0.00 37.65 2.74
290 330 5.499004 AGGGTCTTGCATTAAGTTACAGA 57.501 39.130 0.00 0.00 37.65 3.41
291 331 5.876357 AGGGTCTTGCATTAAGTTACAGAA 58.124 37.500 0.00 0.00 37.65 3.02
292 332 5.940470 AGGGTCTTGCATTAAGTTACAGAAG 59.060 40.000 0.00 0.00 37.65 2.85
293 333 5.123979 GGGTCTTGCATTAAGTTACAGAAGG 59.876 44.000 0.00 0.00 37.65 3.46
294 334 5.705905 GGTCTTGCATTAAGTTACAGAAGGT 59.294 40.000 0.00 0.00 37.65 3.50
295 335 6.348540 GGTCTTGCATTAAGTTACAGAAGGTG 60.349 42.308 0.00 0.00 37.65 4.00
296 336 5.181245 TCTTGCATTAAGTTACAGAAGGTGC 59.819 40.000 0.00 0.00 37.65 5.01
297 337 3.435327 TGCATTAAGTTACAGAAGGTGCG 59.565 43.478 0.00 0.00 33.07 5.34
298 338 3.727970 GCATTAAGTTACAGAAGGTGCGC 60.728 47.826 0.00 0.00 0.00 6.09
299 339 3.396260 TTAAGTTACAGAAGGTGCGCT 57.604 42.857 9.73 0.00 0.00 5.92
300 340 1.512926 AAGTTACAGAAGGTGCGCTG 58.487 50.000 9.73 0.00 38.10 5.18
301 341 0.320771 AGTTACAGAAGGTGCGCTGG 60.321 55.000 9.73 0.00 36.47 4.85
302 342 0.602905 GTTACAGAAGGTGCGCTGGT 60.603 55.000 9.73 0.00 36.47 4.00
303 343 0.107831 TTACAGAAGGTGCGCTGGTT 59.892 50.000 9.73 0.00 36.47 3.67
304 344 0.320421 TACAGAAGGTGCGCTGGTTC 60.320 55.000 9.73 8.50 36.47 3.62
305 345 1.302033 CAGAAGGTGCGCTGGTTCT 60.302 57.895 9.73 10.80 0.00 3.01
306 346 0.037326 CAGAAGGTGCGCTGGTTCTA 60.037 55.000 9.73 0.00 0.00 2.10
307 347 0.247736 AGAAGGTGCGCTGGTTCTAG 59.752 55.000 9.73 0.00 0.00 2.43
308 348 0.741221 GAAGGTGCGCTGGTTCTAGG 60.741 60.000 9.73 0.00 0.00 3.02
309 349 1.192146 AAGGTGCGCTGGTTCTAGGA 61.192 55.000 9.73 0.00 0.00 2.94
310 350 1.153549 GGTGCGCTGGTTCTAGGAG 60.154 63.158 9.73 0.00 0.00 3.69
311 351 1.153549 GTGCGCTGGTTCTAGGAGG 60.154 63.158 9.73 0.00 0.00 4.30
312 352 2.202946 GCGCTGGTTCTAGGAGGC 60.203 66.667 0.00 0.00 0.00 4.70
313 353 2.726351 GCGCTGGTTCTAGGAGGCT 61.726 63.158 0.00 0.00 0.00 4.58
314 354 1.901085 CGCTGGTTCTAGGAGGCTT 59.099 57.895 0.00 0.00 0.00 4.35
315 355 0.250513 CGCTGGTTCTAGGAGGCTTT 59.749 55.000 0.00 0.00 0.00 3.51
316 356 1.480954 CGCTGGTTCTAGGAGGCTTTA 59.519 52.381 0.00 0.00 0.00 1.85
317 357 2.482142 CGCTGGTTCTAGGAGGCTTTAG 60.482 54.545 0.00 0.00 0.00 1.85
318 358 2.743510 GCTGGTTCTAGGAGGCTTTAGC 60.744 54.545 0.00 0.00 41.14 3.09
319 359 2.501723 CTGGTTCTAGGAGGCTTTAGCA 59.498 50.000 3.88 0.00 44.36 3.49
320 360 2.236395 TGGTTCTAGGAGGCTTTAGCAC 59.764 50.000 3.88 0.00 44.36 4.40
321 361 2.541556 GTTCTAGGAGGCTTTAGCACG 58.458 52.381 3.88 0.00 44.36 5.34
322 362 2.139323 TCTAGGAGGCTTTAGCACGA 57.861 50.000 3.88 0.00 44.36 4.35
323 363 2.667470 TCTAGGAGGCTTTAGCACGAT 58.333 47.619 3.88 0.00 44.36 3.73
324 364 3.828921 TCTAGGAGGCTTTAGCACGATA 58.171 45.455 3.88 0.00 44.36 2.92
325 365 4.212716 TCTAGGAGGCTTTAGCACGATAA 58.787 43.478 3.88 0.00 44.36 1.75
326 366 4.833380 TCTAGGAGGCTTTAGCACGATAAT 59.167 41.667 3.88 0.00 44.36 1.28
327 367 4.423625 AGGAGGCTTTAGCACGATAATT 57.576 40.909 3.88 0.00 44.36 1.40
328 368 4.781934 AGGAGGCTTTAGCACGATAATTT 58.218 39.130 3.88 0.00 44.36 1.82
329 369 4.816925 AGGAGGCTTTAGCACGATAATTTC 59.183 41.667 3.88 0.00 44.36 2.17
330 370 4.023963 GGAGGCTTTAGCACGATAATTTCC 60.024 45.833 3.88 0.00 44.36 3.13
331 371 3.883489 AGGCTTTAGCACGATAATTTCCC 59.117 43.478 3.88 0.00 44.36 3.97
332 372 3.303791 GGCTTTAGCACGATAATTTCCCG 60.304 47.826 3.88 0.00 44.36 5.14
333 373 3.558418 GCTTTAGCACGATAATTTCCCGA 59.442 43.478 0.00 0.00 41.59 5.14
334 374 4.552184 GCTTTAGCACGATAATTTCCCGAC 60.552 45.833 0.00 0.00 41.59 4.79
335 375 1.567504 AGCACGATAATTTCCCGACG 58.432 50.000 0.00 0.00 0.00 5.12
336 376 1.134907 AGCACGATAATTTCCCGACGT 60.135 47.619 0.00 0.00 34.40 4.34
337 377 1.662122 GCACGATAATTTCCCGACGTT 59.338 47.619 0.00 0.00 31.82 3.99
338 378 2.285428 GCACGATAATTTCCCGACGTTC 60.285 50.000 0.00 0.00 31.82 3.95
339 379 3.184541 CACGATAATTTCCCGACGTTCT 58.815 45.455 0.00 0.00 31.82 3.01
340 380 4.353737 CACGATAATTTCCCGACGTTCTA 58.646 43.478 0.00 0.00 31.82 2.10
341 381 4.980434 CACGATAATTTCCCGACGTTCTAT 59.020 41.667 0.00 0.00 31.82 1.98
342 382 5.116680 CACGATAATTTCCCGACGTTCTATC 59.883 44.000 0.00 0.00 31.82 2.08
343 383 5.217393 CGATAATTTCCCGACGTTCTATCA 58.783 41.667 0.00 0.00 0.00 2.15
344 384 5.116680 CGATAATTTCCCGACGTTCTATCAC 59.883 44.000 0.00 0.00 0.00 3.06
345 385 3.880047 ATTTCCCGACGTTCTATCACA 57.120 42.857 0.00 0.00 0.00 3.58
346 386 3.663995 TTTCCCGACGTTCTATCACAA 57.336 42.857 0.00 0.00 0.00 3.33
347 387 2.933495 TCCCGACGTTCTATCACAAG 57.067 50.000 0.00 0.00 0.00 3.16
348 388 2.439409 TCCCGACGTTCTATCACAAGA 58.561 47.619 0.00 0.00 0.00 3.02
349 389 2.821378 TCCCGACGTTCTATCACAAGAA 59.179 45.455 0.00 0.00 33.10 2.52
350 390 3.119602 TCCCGACGTTCTATCACAAGAAG 60.120 47.826 0.00 0.00 36.19 2.85
351 391 3.179830 CCGACGTTCTATCACAAGAAGG 58.820 50.000 0.00 5.11 43.61 3.46
355 395 5.924475 ACGTTCTATCACAAGAAGGTTTG 57.076 39.130 6.21 0.00 46.83 2.93
356 396 4.213482 ACGTTCTATCACAAGAAGGTTTGC 59.787 41.667 6.21 0.00 46.83 3.68
357 397 4.378459 CGTTCTATCACAAGAAGGTTTGCC 60.378 45.833 0.00 0.00 36.19 4.52
358 398 3.686016 TCTATCACAAGAAGGTTTGCCC 58.314 45.455 0.00 0.00 34.57 5.36
359 399 1.247567 ATCACAAGAAGGTTTGCCCG 58.752 50.000 0.00 0.00 38.74 6.13
360 400 0.821711 TCACAAGAAGGTTTGCCCGG 60.822 55.000 0.00 0.00 38.74 5.73
361 401 2.200337 ACAAGAAGGTTTGCCCGGC 61.200 57.895 1.04 1.04 38.74 6.13
362 402 1.903404 CAAGAAGGTTTGCCCGGCT 60.903 57.895 11.61 0.00 38.74 5.52
363 403 1.603739 AAGAAGGTTTGCCCGGCTC 60.604 57.895 11.61 0.00 38.74 4.70
364 404 3.431725 GAAGGTTTGCCCGGCTCG 61.432 66.667 11.61 0.00 38.74 5.03
365 405 3.894547 GAAGGTTTGCCCGGCTCGA 62.895 63.158 11.61 0.00 38.74 4.04
366 406 3.268103 AAGGTTTGCCCGGCTCGAT 62.268 57.895 11.61 0.00 38.74 3.59
367 407 3.508840 GGTTTGCCCGGCTCGATG 61.509 66.667 11.61 0.00 0.00 3.84
368 408 2.435938 GTTTGCCCGGCTCGATGA 60.436 61.111 11.61 0.00 0.00 2.92
369 409 2.125147 TTTGCCCGGCTCGATGAG 60.125 61.111 11.61 0.00 0.00 2.90
370 410 3.680620 TTTGCCCGGCTCGATGAGG 62.681 63.158 11.61 0.00 0.00 3.86
373 413 4.227134 CCCGGCTCGATGAGGGTG 62.227 72.222 0.00 0.00 39.05 4.61
374 414 3.147595 CCGGCTCGATGAGGGTGA 61.148 66.667 0.00 0.00 0.00 4.02
375 415 2.502492 CCGGCTCGATGAGGGTGAT 61.502 63.158 0.00 0.00 0.00 3.06
376 416 1.300465 CGGCTCGATGAGGGTGATG 60.300 63.158 0.00 0.00 0.00 3.07
377 417 1.596477 GGCTCGATGAGGGTGATGC 60.596 63.158 0.00 0.00 0.00 3.91
378 418 1.953138 GCTCGATGAGGGTGATGCG 60.953 63.158 0.00 0.00 0.00 4.73
379 419 1.439228 CTCGATGAGGGTGATGCGT 59.561 57.895 0.00 0.00 0.00 5.24
380 420 0.596083 CTCGATGAGGGTGATGCGTC 60.596 60.000 0.00 0.00 0.00 5.19
381 421 1.037579 TCGATGAGGGTGATGCGTCT 61.038 55.000 7.58 0.00 0.00 4.18
382 422 0.596083 CGATGAGGGTGATGCGTCTC 60.596 60.000 7.58 3.21 0.00 3.36
383 423 0.249657 GATGAGGGTGATGCGTCTCC 60.250 60.000 17.11 17.11 37.30 3.71
384 424 2.021068 ATGAGGGTGATGCGTCTCCG 62.021 60.000 18.38 0.00 38.60 4.63
395 435 4.200283 GTCTCCGCCTCGCTCCAG 62.200 72.222 0.00 0.00 0.00 3.86
396 436 4.742649 TCTCCGCCTCGCTCCAGT 62.743 66.667 0.00 0.00 0.00 4.00
397 437 4.504916 CTCCGCCTCGCTCCAGTG 62.505 72.222 0.00 0.00 0.00 3.66
399 439 4.379243 CCGCCTCGCTCCAGTGTT 62.379 66.667 0.00 0.00 0.00 3.32
400 440 2.357517 CGCCTCGCTCCAGTGTTT 60.358 61.111 0.00 0.00 0.00 2.83
401 441 2.671177 CGCCTCGCTCCAGTGTTTG 61.671 63.158 0.00 0.00 0.00 2.93
402 442 1.598130 GCCTCGCTCCAGTGTTTGT 60.598 57.895 0.00 0.00 0.00 2.83
403 443 0.320421 GCCTCGCTCCAGTGTTTGTA 60.320 55.000 0.00 0.00 0.00 2.41
404 444 1.714794 CCTCGCTCCAGTGTTTGTAG 58.285 55.000 0.00 0.00 0.00 2.74
405 445 1.000955 CCTCGCTCCAGTGTTTGTAGT 59.999 52.381 0.00 0.00 0.00 2.73
406 446 2.329379 CTCGCTCCAGTGTTTGTAGTC 58.671 52.381 0.00 0.00 0.00 2.59
407 447 1.060713 CGCTCCAGTGTTTGTAGTCG 58.939 55.000 0.00 0.00 0.00 4.18
408 448 1.602165 CGCTCCAGTGTTTGTAGTCGT 60.602 52.381 0.00 0.00 0.00 4.34
409 449 2.059541 GCTCCAGTGTTTGTAGTCGTC 58.940 52.381 0.00 0.00 0.00 4.20
410 450 2.545113 GCTCCAGTGTTTGTAGTCGTCA 60.545 50.000 0.00 0.00 0.00 4.35
411 451 3.861131 GCTCCAGTGTTTGTAGTCGTCAT 60.861 47.826 0.00 0.00 0.00 3.06
412 452 4.307432 CTCCAGTGTTTGTAGTCGTCATT 58.693 43.478 0.00 0.00 0.00 2.57
413 453 5.456548 TCCAGTGTTTGTAGTCGTCATTA 57.543 39.130 0.00 0.00 0.00 1.90
414 454 5.466819 TCCAGTGTTTGTAGTCGTCATTAG 58.533 41.667 0.00 0.00 0.00 1.73
415 455 4.625742 CCAGTGTTTGTAGTCGTCATTAGG 59.374 45.833 0.00 0.00 0.00 2.69
416 456 5.227908 CAGTGTTTGTAGTCGTCATTAGGT 58.772 41.667 0.00 0.00 0.00 3.08
417 457 5.694910 CAGTGTTTGTAGTCGTCATTAGGTT 59.305 40.000 0.00 0.00 0.00 3.50
418 458 5.694910 AGTGTTTGTAGTCGTCATTAGGTTG 59.305 40.000 0.00 0.00 0.00 3.77
419 459 5.464389 GTGTTTGTAGTCGTCATTAGGTTGT 59.536 40.000 0.00 0.00 0.00 3.32
420 460 5.693104 TGTTTGTAGTCGTCATTAGGTTGTC 59.307 40.000 0.00 0.00 0.00 3.18
421 461 5.717078 TTGTAGTCGTCATTAGGTTGTCT 57.283 39.130 0.00 0.00 0.00 3.41
422 462 6.822667 TTGTAGTCGTCATTAGGTTGTCTA 57.177 37.500 0.00 0.00 0.00 2.59
423 463 6.187125 TGTAGTCGTCATTAGGTTGTCTAC 57.813 41.667 0.00 0.00 0.00 2.59
424 464 4.352600 AGTCGTCATTAGGTTGTCTACG 57.647 45.455 0.00 0.00 0.00 3.51
425 465 4.005650 AGTCGTCATTAGGTTGTCTACGA 58.994 43.478 0.00 0.00 0.00 3.43
426 466 4.456911 AGTCGTCATTAGGTTGTCTACGAA 59.543 41.667 0.00 0.00 28.94 3.85
427 467 4.556523 GTCGTCATTAGGTTGTCTACGAAC 59.443 45.833 0.00 0.00 28.94 3.95
428 468 3.855950 CGTCATTAGGTTGTCTACGAACC 59.144 47.826 0.00 0.00 42.91 3.62
438 478 7.230466 GGTTGTCTACGAACCTAAATGTATG 57.770 40.000 0.00 0.00 39.94 2.39
439 479 6.815142 GGTTGTCTACGAACCTAAATGTATGT 59.185 38.462 0.00 0.00 39.94 2.29
440 480 7.332678 GGTTGTCTACGAACCTAAATGTATGTT 59.667 37.037 0.00 0.00 39.94 2.71
441 481 8.715088 GTTGTCTACGAACCTAAATGTATGTTT 58.285 33.333 0.00 0.00 0.00 2.83
442 482 8.836268 TGTCTACGAACCTAAATGTATGTTTT 57.164 30.769 0.00 0.00 0.00 2.43
443 483 9.275398 TGTCTACGAACCTAAATGTATGTTTTT 57.725 29.630 0.00 0.00 0.00 1.94
483 523 3.580895 TGTACTACCTTGACAGCCAATGA 59.419 43.478 0.00 0.00 33.68 2.57
484 524 3.788227 ACTACCTTGACAGCCAATGAA 57.212 42.857 0.00 0.00 33.68 2.57
486 526 5.435686 ACTACCTTGACAGCCAATGAATA 57.564 39.130 0.00 0.00 33.68 1.75
487 527 5.431765 ACTACCTTGACAGCCAATGAATAG 58.568 41.667 0.00 0.00 33.68 1.73
489 529 5.121380 ACCTTGACAGCCAATGAATAGAT 57.879 39.130 0.00 0.00 33.68 1.98
493 533 6.994496 CCTTGACAGCCAATGAATAGATAGAA 59.006 38.462 0.00 0.00 33.68 2.10
495 535 8.442632 TTGACAGCCAATGAATAGATAGAAAG 57.557 34.615 0.00 0.00 0.00 2.62
497 537 8.049117 TGACAGCCAATGAATAGATAGAAAGTT 58.951 33.333 0.00 0.00 0.00 2.66
498 538 8.443953 ACAGCCAATGAATAGATAGAAAGTTC 57.556 34.615 0.00 0.00 0.00 3.01
499 539 7.500559 ACAGCCAATGAATAGATAGAAAGTTCC 59.499 37.037 0.00 0.00 0.00 3.62
500 540 7.001073 AGCCAATGAATAGATAGAAAGTTCCC 58.999 38.462 0.00 0.00 0.00 3.97
502 542 7.040823 GCCAATGAATAGATAGAAAGTTCCCAG 60.041 40.741 0.00 0.00 0.00 4.45
503 543 7.995488 CCAATGAATAGATAGAAAGTTCCCAGT 59.005 37.037 0.00 0.00 0.00 4.00
504 544 9.050601 CAATGAATAGATAGAAAGTTCCCAGTC 57.949 37.037 0.00 0.00 0.00 3.51
540 580 8.826765 AGAATAGATAGAAAGTTTTCCTCACCA 58.173 33.333 1.16 0.00 37.92 4.17
542 582 9.807921 AATAGATAGAAAGTTTTCCTCACCAAA 57.192 29.630 1.16 0.00 37.92 3.28
543 583 9.981460 ATAGATAGAAAGTTTTCCTCACCAAAT 57.019 29.630 1.16 0.00 37.92 2.32
545 585 9.807921 AGATAGAAAGTTTTCCTCACCAAATAA 57.192 29.630 1.16 0.00 37.92 1.40
549 589 9.599866 AGAAAGTTTTCCTCACCAAATAAAAAG 57.400 29.630 1.16 0.00 37.92 2.27
550 590 9.378551 GAAAGTTTTCCTCACCAAATAAAAAGT 57.621 29.630 0.00 0.00 0.00 2.66
551 591 9.733556 AAAGTTTTCCTCACCAAATAAAAAGTT 57.266 25.926 0.00 0.00 33.16 2.66
566 606 8.983702 AATAAAAAGTTGGGTCTGTAAGTACA 57.016 30.769 0.00 0.00 33.76 2.90
709 1351 2.325082 CGCCTCCTGTTTCCCGTTG 61.325 63.158 0.00 0.00 0.00 4.10
802 1458 3.778629 TCTCCTGGGGGTAAACTTGATAC 59.221 47.826 0.00 0.00 0.00 2.24
814 1470 7.711339 GGGTAAACTTGATACCATAGTGAGAAG 59.289 40.741 5.21 0.00 43.83 2.85
880 1557 0.374758 TCGAGATAGCGCGTTTACGT 59.625 50.000 8.43 0.00 42.22 3.57
1017 1694 1.734137 CATGGCAATGGAGCAGCTC 59.266 57.895 14.69 14.69 35.83 4.09
1069 1746 2.025226 ACCTTCATCTACCTCGTCCTCA 60.025 50.000 0.00 0.00 0.00 3.86
1205 1882 2.203252 CCACCGCATGATGGAGGG 60.203 66.667 11.03 8.06 38.34 4.30
1461 2138 2.591753 CACCGGTGGCTCCATGAT 59.408 61.111 27.57 0.00 35.57 2.45
1545 2237 2.678580 TCATCGTCGGGCAGTGGA 60.679 61.111 0.00 0.00 0.00 4.02
1716 2411 2.577593 GGGCTCCTCTACGCGTTT 59.422 61.111 20.78 0.00 0.00 3.60
1737 2432 0.820891 GCGTATCCGACTACCTCCCA 60.821 60.000 0.00 0.00 35.63 4.37
1741 2436 0.264955 ATCCGACTACCTCCCATGGT 59.735 55.000 11.73 0.00 43.66 3.55
1744 2439 0.902531 CGACTACCTCCCATGGTTGT 59.097 55.000 11.73 7.12 45.78 3.32
1758 2453 2.110213 TTGTGCGGCTTCGACCTT 59.890 55.556 0.00 0.00 35.61 3.50
2014 2709 2.053277 ATGCATGCATGGCCAACGA 61.053 52.632 31.74 0.21 35.03 3.85
2021 2716 0.456653 GCATGGCCAACGAATGTCAC 60.457 55.000 10.96 0.00 0.00 3.67
2041 2738 5.578727 GTCACACATTTACAAGGTGCAAAAA 59.421 36.000 1.34 0.00 46.37 1.94
2066 2767 8.485976 AAGAGAGTTGACTAACTAATTGATGC 57.514 34.615 0.00 0.00 46.79 3.91
2072 2773 4.935205 TGACTAACTAATTGATGCGTTGCT 59.065 37.500 0.00 0.00 0.00 3.91
2073 2774 5.163864 TGACTAACTAATTGATGCGTTGCTG 60.164 40.000 0.00 0.00 0.00 4.41
2107 2817 4.018415 ACATGGTAGGACATAACCTTTGCT 60.018 41.667 0.00 0.00 41.00 3.91
2134 2844 1.446445 CAACCCATCGAACGCGGTA 60.446 57.895 12.47 0.00 38.28 4.02
2163 2873 2.184322 GGCAGAGATGGCGAACGA 59.816 61.111 0.00 0.00 0.00 3.85
2477 3190 1.465794 TACGACCACGGATGATGTGA 58.534 50.000 0.00 0.00 44.46 3.58
2844 3557 0.042131 ATAGTCCCGGTTGGTGAGGA 59.958 55.000 0.00 0.00 34.77 3.71
2864 3577 1.280998 ACCTTTAGTCCCGGTTCATGG 59.719 52.381 0.00 0.00 0.00 3.66
2908 3622 1.972588 ATGCCCTGACCCTTTAGTCT 58.027 50.000 0.00 0.00 37.66 3.24
2935 3649 2.434336 CAATCCAGAACCGGGACAGATA 59.566 50.000 6.32 0.00 37.23 1.98
3151 3881 9.974980 GCTAGCTAATTAATAGAGAGAAGTGTT 57.025 33.333 7.70 0.00 33.04 3.32
3326 4088 3.493129 CGAGAGATTGGTCGAACAACAAA 59.507 43.478 20.01 0.00 38.50 2.83
3507 4284 0.602106 CATGCGATCTGGTGCTAGGG 60.602 60.000 0.00 0.00 0.00 3.53
3660 4477 7.523293 TGAAACTCAACACAAATGATGGTAT 57.477 32.000 0.00 0.00 0.00 2.73
3661 4478 8.628630 TGAAACTCAACACAAATGATGGTATA 57.371 30.769 0.00 0.00 0.00 1.47
3662 4479 8.511321 TGAAACTCAACACAAATGATGGTATAC 58.489 33.333 0.00 0.00 0.00 1.47
3663 4480 7.994425 AACTCAACACAAATGATGGTATACA 57.006 32.000 5.01 0.00 0.00 2.29
3664 4481 7.994425 ACTCAACACAAATGATGGTATACAA 57.006 32.000 5.01 0.00 0.00 2.41
3665 4482 7.816640 ACTCAACACAAATGATGGTATACAAC 58.183 34.615 5.01 0.00 0.00 3.32
3666 4483 6.836953 TCAACACAAATGATGGTATACAACG 58.163 36.000 5.01 0.00 0.00 4.10
3667 4484 5.229921 ACACAAATGATGGTATACAACGC 57.770 39.130 5.01 0.00 0.00 4.84
3668 4485 4.941263 ACACAAATGATGGTATACAACGCT 59.059 37.500 5.01 0.00 0.00 5.07
3669 4486 5.414454 ACACAAATGATGGTATACAACGCTT 59.586 36.000 5.01 0.00 0.00 4.68
3670 4487 5.965334 CACAAATGATGGTATACAACGCTTC 59.035 40.000 5.01 0.00 0.00 3.86
3671 4488 5.880332 ACAAATGATGGTATACAACGCTTCT 59.120 36.000 5.01 0.00 0.00 2.85
3672 4489 6.374333 ACAAATGATGGTATACAACGCTTCTT 59.626 34.615 5.01 0.00 0.00 2.52
3673 4490 5.991328 ATGATGGTATACAACGCTTCTTG 57.009 39.130 5.01 0.00 0.00 3.02
3674 4491 4.827692 TGATGGTATACAACGCTTCTTGT 58.172 39.130 5.01 0.00 38.03 3.16
3675 4492 4.629634 TGATGGTATACAACGCTTCTTGTG 59.370 41.667 5.01 0.00 35.87 3.33
3676 4493 2.739913 TGGTATACAACGCTTCTTGTGC 59.260 45.455 5.01 0.00 35.87 4.57
3677 4494 3.000727 GGTATACAACGCTTCTTGTGCT 58.999 45.455 5.01 0.00 35.87 4.40
3678 4495 3.435671 GGTATACAACGCTTCTTGTGCTT 59.564 43.478 5.01 0.00 35.87 3.91
3679 4496 3.813529 ATACAACGCTTCTTGTGCTTC 57.186 42.857 0.00 0.00 35.87 3.86
3680 4497 0.304705 ACAACGCTTCTTGTGCTTCG 59.695 50.000 0.00 0.00 32.95 3.79
3681 4498 0.304705 CAACGCTTCTTGTGCTTCGT 59.695 50.000 0.00 0.00 0.00 3.85
3682 4499 0.582005 AACGCTTCTTGTGCTTCGTC 59.418 50.000 0.00 0.00 0.00 4.20
3683 4500 0.249489 ACGCTTCTTGTGCTTCGTCT 60.249 50.000 0.00 0.00 0.00 4.18
3684 4501 0.436531 CGCTTCTTGTGCTTCGTCTC 59.563 55.000 0.00 0.00 0.00 3.36
3685 4502 0.436531 GCTTCTTGTGCTTCGTCTCG 59.563 55.000 0.00 0.00 0.00 4.04
3686 4503 1.063806 CTTCTTGTGCTTCGTCTCGG 58.936 55.000 0.00 0.00 0.00 4.63
3687 4504 0.319555 TTCTTGTGCTTCGTCTCGGG 60.320 55.000 0.00 0.00 0.00 5.14
3688 4505 1.738099 CTTGTGCTTCGTCTCGGGG 60.738 63.158 0.00 0.00 0.00 5.73
3689 4506 3.876589 TTGTGCTTCGTCTCGGGGC 62.877 63.158 0.00 0.00 0.00 5.80
3703 4520 3.087906 GGGCGGGGTGTCCATAGT 61.088 66.667 0.00 0.00 44.04 2.12
3704 4521 2.676265 GGGCGGGGTGTCCATAGTT 61.676 63.158 0.00 0.00 44.04 2.24
3705 4522 1.301954 GGCGGGGTGTCCATAGTTT 59.698 57.895 0.00 0.00 34.36 2.66
3706 4523 0.746923 GGCGGGGTGTCCATAGTTTC 60.747 60.000 0.00 0.00 34.36 2.78
3707 4524 0.252197 GCGGGGTGTCCATAGTTTCT 59.748 55.000 0.00 0.00 34.36 2.52
3708 4525 1.483415 GCGGGGTGTCCATAGTTTCTA 59.517 52.381 0.00 0.00 34.36 2.10
3709 4526 2.740904 GCGGGGTGTCCATAGTTTCTAC 60.741 54.545 0.00 0.00 34.36 2.59
3710 4527 2.498481 CGGGGTGTCCATAGTTTCTACA 59.502 50.000 0.00 0.00 34.36 2.74
3711 4528 3.055675 CGGGGTGTCCATAGTTTCTACAA 60.056 47.826 0.00 0.00 34.36 2.41
3712 4529 4.563993 CGGGGTGTCCATAGTTTCTACAAA 60.564 45.833 0.00 0.00 34.36 2.83
3713 4530 5.506708 GGGGTGTCCATAGTTTCTACAAAT 58.493 41.667 0.00 0.00 35.00 2.32
3714 4531 6.630863 CGGGGTGTCCATAGTTTCTACAAATA 60.631 42.308 0.00 0.00 34.36 1.40
3715 4532 7.287810 GGGGTGTCCATAGTTTCTACAAATAT 58.712 38.462 0.00 0.00 35.00 1.28
3716 4533 7.778382 GGGGTGTCCATAGTTTCTACAAATATT 59.222 37.037 0.00 0.00 35.00 1.28
3717 4534 9.185680 GGGTGTCCATAGTTTCTACAAATATTT 57.814 33.333 0.00 0.00 0.00 1.40
3727 4544 9.855021 AGTTTCTACAAATATTTACAACATGGC 57.145 29.630 0.00 0.00 0.00 4.40
3728 4545 9.632807 GTTTCTACAAATATTTACAACATGGCA 57.367 29.630 0.00 0.00 0.00 4.92
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 7.566148 GCAACGTATTTTGTTATGCGAGTTTTT 60.566 33.333 0.00 0.00 37.13 1.94
10 11 6.129300 GCAACGTATTTTGTTATGCGAGTTTT 60.129 34.615 0.00 0.00 37.13 2.43
11 12 5.341196 GCAACGTATTTTGTTATGCGAGTTT 59.659 36.000 0.00 0.00 37.13 2.66
12 13 4.849383 GCAACGTATTTTGTTATGCGAGTT 59.151 37.500 0.00 0.00 37.13 3.01
13 14 4.153475 AGCAACGTATTTTGTTATGCGAGT 59.847 37.500 0.00 0.00 37.13 4.18
14 15 4.647964 AGCAACGTATTTTGTTATGCGAG 58.352 39.130 0.00 0.00 37.13 5.03
15 16 4.436317 GGAGCAACGTATTTTGTTATGCGA 60.436 41.667 0.00 0.00 37.13 5.10
16 17 3.783943 GGAGCAACGTATTTTGTTATGCG 59.216 43.478 0.00 0.00 39.16 4.73
17 18 4.102649 GGGAGCAACGTATTTTGTTATGC 58.897 43.478 0.00 0.00 0.00 3.14
18 19 4.339429 CGGGAGCAACGTATTTTGTTATG 58.661 43.478 0.00 0.00 0.00 1.90
19 20 3.375922 CCGGGAGCAACGTATTTTGTTAT 59.624 43.478 0.00 0.00 0.00 1.89
20 21 2.743126 CCGGGAGCAACGTATTTTGTTA 59.257 45.455 0.00 0.00 0.00 2.41
21 22 1.538075 CCGGGAGCAACGTATTTTGTT 59.462 47.619 0.00 0.00 0.00 2.83
22 23 1.161843 CCGGGAGCAACGTATTTTGT 58.838 50.000 0.00 0.00 0.00 2.83
56 57 2.819154 CGCGTGCATCATGGTCCA 60.819 61.111 0.00 0.00 0.00 4.02
58 59 1.431488 ATGACGCGTGCATCATGGTC 61.431 55.000 20.70 0.00 34.23 4.02
59 60 1.450134 ATGACGCGTGCATCATGGT 60.450 52.632 20.70 0.00 34.23 3.55
60 61 1.010462 CATGACGCGTGCATCATGG 60.010 57.895 20.70 5.19 45.62 3.66
61 62 4.582452 CATGACGCGTGCATCATG 57.418 55.556 20.70 20.20 44.53 3.07
62 63 2.711311 GCATGACGCGTGCATCAT 59.289 55.556 20.70 11.47 44.78 2.45
91 98 2.747177 CTAGTACCACCCTGATCACCA 58.253 52.381 0.00 0.00 0.00 4.17
170 210 6.070938 ACCTATACCTAGTTGAGTTGTTGTCC 60.071 42.308 0.00 0.00 0.00 4.02
171 211 6.932947 ACCTATACCTAGTTGAGTTGTTGTC 58.067 40.000 0.00 0.00 0.00 3.18
172 212 6.930068 ACCTATACCTAGTTGAGTTGTTGT 57.070 37.500 0.00 0.00 0.00 3.32
234 274 9.010029 CAGGGTAATGTAAGATGTTTTTGTAGT 57.990 33.333 0.00 0.00 0.00 2.73
235 275 7.968405 GCAGGGTAATGTAAGATGTTTTTGTAG 59.032 37.037 0.00 0.00 0.00 2.74
236 276 7.448777 TGCAGGGTAATGTAAGATGTTTTTGTA 59.551 33.333 0.00 0.00 0.00 2.41
237 277 6.266558 TGCAGGGTAATGTAAGATGTTTTTGT 59.733 34.615 0.00 0.00 0.00 2.83
238 278 6.686630 TGCAGGGTAATGTAAGATGTTTTTG 58.313 36.000 0.00 0.00 0.00 2.44
239 279 6.909550 TGCAGGGTAATGTAAGATGTTTTT 57.090 33.333 0.00 0.00 0.00 1.94
240 280 6.719370 TCTTGCAGGGTAATGTAAGATGTTTT 59.281 34.615 3.57 0.00 43.94 2.43
241 281 6.245408 TCTTGCAGGGTAATGTAAGATGTTT 58.755 36.000 3.57 0.00 43.94 2.83
242 282 5.815581 TCTTGCAGGGTAATGTAAGATGTT 58.184 37.500 3.57 0.00 43.94 2.71
243 283 5.435686 TCTTGCAGGGTAATGTAAGATGT 57.564 39.130 3.57 0.00 43.94 3.06
244 284 6.757897 TTTCTTGCAGGGTAATGTAAGATG 57.242 37.500 7.84 0.00 46.67 2.90
245 285 6.378280 CCTTTTCTTGCAGGGTAATGTAAGAT 59.622 38.462 7.84 0.00 46.67 2.40
246 286 5.710099 CCTTTTCTTGCAGGGTAATGTAAGA 59.290 40.000 3.57 3.57 46.09 2.10
247 287 5.105756 CCCTTTTCTTGCAGGGTAATGTAAG 60.106 44.000 0.00 0.00 44.58 2.34
248 288 4.770010 CCCTTTTCTTGCAGGGTAATGTAA 59.230 41.667 0.00 0.00 44.58 2.41
249 289 4.340617 CCCTTTTCTTGCAGGGTAATGTA 58.659 43.478 0.00 0.00 44.58 2.29
250 290 3.165071 CCCTTTTCTTGCAGGGTAATGT 58.835 45.455 0.00 0.00 44.58 2.71
251 291 3.874392 CCCTTTTCTTGCAGGGTAATG 57.126 47.619 0.00 0.00 44.58 1.90
262 302 6.731292 AACTTAATGCAAGACCCTTTTCTT 57.269 33.333 0.00 0.00 37.71 2.52
263 303 6.775629 TGTAACTTAATGCAAGACCCTTTTCT 59.224 34.615 0.00 0.00 37.71 2.52
264 304 6.977213 TGTAACTTAATGCAAGACCCTTTTC 58.023 36.000 0.00 0.00 37.71 2.29
265 305 6.775629 TCTGTAACTTAATGCAAGACCCTTTT 59.224 34.615 0.00 0.00 37.71 2.27
266 306 6.303839 TCTGTAACTTAATGCAAGACCCTTT 58.696 36.000 0.00 0.00 37.71 3.11
267 307 5.876357 TCTGTAACTTAATGCAAGACCCTT 58.124 37.500 0.00 0.00 37.71 3.95
268 308 5.499004 TCTGTAACTTAATGCAAGACCCT 57.501 39.130 0.00 0.00 37.71 4.34
269 309 5.123979 CCTTCTGTAACTTAATGCAAGACCC 59.876 44.000 0.00 0.00 37.71 4.46
270 310 5.705905 ACCTTCTGTAACTTAATGCAAGACC 59.294 40.000 0.00 0.00 37.71 3.85
271 311 6.603095 CACCTTCTGTAACTTAATGCAAGAC 58.397 40.000 0.00 0.00 37.71 3.01
272 312 5.181245 GCACCTTCTGTAACTTAATGCAAGA 59.819 40.000 0.00 0.00 37.71 3.02
273 313 5.393962 GCACCTTCTGTAACTTAATGCAAG 58.606 41.667 0.00 0.00 40.38 4.01
274 314 4.083537 CGCACCTTCTGTAACTTAATGCAA 60.084 41.667 0.00 0.00 0.00 4.08
275 315 3.435327 CGCACCTTCTGTAACTTAATGCA 59.565 43.478 0.00 0.00 0.00 3.96
276 316 3.727970 GCGCACCTTCTGTAACTTAATGC 60.728 47.826 0.30 0.00 0.00 3.56
277 317 3.684788 AGCGCACCTTCTGTAACTTAATG 59.315 43.478 11.47 0.00 0.00 1.90
278 318 3.684788 CAGCGCACCTTCTGTAACTTAAT 59.315 43.478 11.47 0.00 0.00 1.40
279 319 3.064207 CAGCGCACCTTCTGTAACTTAA 58.936 45.455 11.47 0.00 0.00 1.85
280 320 2.611971 CCAGCGCACCTTCTGTAACTTA 60.612 50.000 11.47 0.00 0.00 2.24
281 321 1.512926 CAGCGCACCTTCTGTAACTT 58.487 50.000 11.47 0.00 0.00 2.66
282 322 0.320771 CCAGCGCACCTTCTGTAACT 60.321 55.000 11.47 0.00 0.00 2.24
283 323 0.602905 ACCAGCGCACCTTCTGTAAC 60.603 55.000 11.47 0.00 0.00 2.50
284 324 0.107831 AACCAGCGCACCTTCTGTAA 59.892 50.000 11.47 0.00 0.00 2.41
285 325 0.320421 GAACCAGCGCACCTTCTGTA 60.320 55.000 11.47 0.00 0.00 2.74
286 326 1.598130 GAACCAGCGCACCTTCTGT 60.598 57.895 11.47 0.00 0.00 3.41
287 327 0.037326 TAGAACCAGCGCACCTTCTG 60.037 55.000 11.47 0.00 0.00 3.02
288 328 0.247736 CTAGAACCAGCGCACCTTCT 59.752 55.000 11.47 13.92 0.00 2.85
289 329 0.741221 CCTAGAACCAGCGCACCTTC 60.741 60.000 11.47 6.51 0.00 3.46
290 330 1.192146 TCCTAGAACCAGCGCACCTT 61.192 55.000 11.47 0.00 0.00 3.50
291 331 1.608717 CTCCTAGAACCAGCGCACCT 61.609 60.000 11.47 0.93 0.00 4.00
292 332 1.153549 CTCCTAGAACCAGCGCACC 60.154 63.158 11.47 0.00 0.00 5.01
293 333 1.153549 CCTCCTAGAACCAGCGCAC 60.154 63.158 11.47 0.00 0.00 5.34
294 334 3.019003 GCCTCCTAGAACCAGCGCA 62.019 63.158 11.47 0.00 0.00 6.09
295 335 2.202946 GCCTCCTAGAACCAGCGC 60.203 66.667 0.00 0.00 0.00 5.92
296 336 0.250513 AAAGCCTCCTAGAACCAGCG 59.749 55.000 0.00 0.00 0.00 5.18
297 337 2.743510 GCTAAAGCCTCCTAGAACCAGC 60.744 54.545 0.00 0.00 34.31 4.85
298 338 2.501723 TGCTAAAGCCTCCTAGAACCAG 59.498 50.000 0.00 0.00 41.18 4.00
299 339 2.236395 GTGCTAAAGCCTCCTAGAACCA 59.764 50.000 0.00 0.00 41.18 3.67
300 340 2.738964 CGTGCTAAAGCCTCCTAGAACC 60.739 54.545 0.00 0.00 41.18 3.62
301 341 2.165845 TCGTGCTAAAGCCTCCTAGAAC 59.834 50.000 0.00 0.00 41.18 3.01
302 342 2.453521 TCGTGCTAAAGCCTCCTAGAA 58.546 47.619 0.00 0.00 41.18 2.10
303 343 2.139323 TCGTGCTAAAGCCTCCTAGA 57.861 50.000 0.00 0.00 41.18 2.43
304 344 4.585955 TTATCGTGCTAAAGCCTCCTAG 57.414 45.455 0.00 0.00 41.18 3.02
305 345 5.546621 AATTATCGTGCTAAAGCCTCCTA 57.453 39.130 0.00 0.00 41.18 2.94
306 346 4.423625 AATTATCGTGCTAAAGCCTCCT 57.576 40.909 0.00 0.00 41.18 3.69
307 347 4.023963 GGAAATTATCGTGCTAAAGCCTCC 60.024 45.833 0.00 0.00 41.18 4.30
308 348 4.023963 GGGAAATTATCGTGCTAAAGCCTC 60.024 45.833 0.00 0.00 41.18 4.70
309 349 3.883489 GGGAAATTATCGTGCTAAAGCCT 59.117 43.478 0.00 0.00 41.18 4.58
310 350 3.303791 CGGGAAATTATCGTGCTAAAGCC 60.304 47.826 0.00 0.00 41.18 4.35
311 351 3.558418 TCGGGAAATTATCGTGCTAAAGC 59.442 43.478 0.00 0.00 42.50 3.51
312 352 4.317839 CGTCGGGAAATTATCGTGCTAAAG 60.318 45.833 0.00 0.00 0.00 1.85
313 353 3.552699 CGTCGGGAAATTATCGTGCTAAA 59.447 43.478 0.00 0.00 0.00 1.85
314 354 3.117794 CGTCGGGAAATTATCGTGCTAA 58.882 45.455 0.00 0.00 0.00 3.09
315 355 2.099592 ACGTCGGGAAATTATCGTGCTA 59.900 45.455 0.00 0.00 0.00 3.49
316 356 1.134907 ACGTCGGGAAATTATCGTGCT 60.135 47.619 0.00 0.00 0.00 4.40
317 357 1.283736 ACGTCGGGAAATTATCGTGC 58.716 50.000 0.00 0.00 0.00 5.34
318 358 3.184541 AGAACGTCGGGAAATTATCGTG 58.815 45.455 0.00 0.00 0.00 4.35
319 359 3.515330 AGAACGTCGGGAAATTATCGT 57.485 42.857 0.00 0.00 0.00 3.73
320 360 5.116680 GTGATAGAACGTCGGGAAATTATCG 59.883 44.000 0.00 0.00 0.00 2.92
321 361 5.981315 TGTGATAGAACGTCGGGAAATTATC 59.019 40.000 0.00 0.00 0.00 1.75
322 362 5.909477 TGTGATAGAACGTCGGGAAATTAT 58.091 37.500 0.00 0.00 0.00 1.28
323 363 5.327616 TGTGATAGAACGTCGGGAAATTA 57.672 39.130 0.00 0.00 0.00 1.40
324 364 4.196626 TGTGATAGAACGTCGGGAAATT 57.803 40.909 0.00 0.00 0.00 1.82
325 365 3.880047 TGTGATAGAACGTCGGGAAAT 57.120 42.857 0.00 0.00 0.00 2.17
326 366 3.256383 TCTTGTGATAGAACGTCGGGAAA 59.744 43.478 0.00 0.00 0.00 3.13
327 367 2.821378 TCTTGTGATAGAACGTCGGGAA 59.179 45.455 0.00 0.00 0.00 3.97
328 368 2.439409 TCTTGTGATAGAACGTCGGGA 58.561 47.619 0.00 0.00 0.00 5.14
329 369 2.933495 TCTTGTGATAGAACGTCGGG 57.067 50.000 0.00 0.00 0.00 5.14
330 370 3.179830 CCTTCTTGTGATAGAACGTCGG 58.820 50.000 0.00 0.00 31.19 4.79
331 371 3.834610 ACCTTCTTGTGATAGAACGTCG 58.165 45.455 0.00 0.00 31.19 5.12
332 372 5.614887 GCAAACCTTCTTGTGATAGAACGTC 60.615 44.000 0.00 0.00 31.19 4.34
333 373 4.213482 GCAAACCTTCTTGTGATAGAACGT 59.787 41.667 0.00 0.00 31.19 3.99
334 374 4.378459 GGCAAACCTTCTTGTGATAGAACG 60.378 45.833 0.00 0.00 31.19 3.95
335 375 4.082733 GGGCAAACCTTCTTGTGATAGAAC 60.083 45.833 0.00 0.00 35.85 3.01
336 376 4.079253 GGGCAAACCTTCTTGTGATAGAA 58.921 43.478 0.00 0.00 35.85 2.10
337 377 3.686016 GGGCAAACCTTCTTGTGATAGA 58.314 45.455 0.00 0.00 35.85 1.98
338 378 2.420022 CGGGCAAACCTTCTTGTGATAG 59.580 50.000 0.00 0.00 36.97 2.08
339 379 2.432444 CGGGCAAACCTTCTTGTGATA 58.568 47.619 0.00 0.00 36.97 2.15
340 380 1.247567 CGGGCAAACCTTCTTGTGAT 58.752 50.000 0.00 0.00 36.97 3.06
341 381 0.821711 CCGGGCAAACCTTCTTGTGA 60.822 55.000 0.00 0.00 36.97 3.58
342 382 1.659794 CCGGGCAAACCTTCTTGTG 59.340 57.895 0.00 0.00 36.97 3.33
343 383 2.200337 GCCGGGCAAACCTTCTTGT 61.200 57.895 15.62 0.00 36.97 3.16
344 384 1.866853 GAGCCGGGCAAACCTTCTTG 61.867 60.000 23.09 0.00 36.97 3.02
345 385 1.603739 GAGCCGGGCAAACCTTCTT 60.604 57.895 23.09 0.00 36.97 2.52
346 386 2.034221 GAGCCGGGCAAACCTTCT 59.966 61.111 23.09 0.00 36.97 2.85
347 387 3.431725 CGAGCCGGGCAAACCTTC 61.432 66.667 23.09 7.73 36.97 3.46
348 388 3.268103 ATCGAGCCGGGCAAACCTT 62.268 57.895 23.09 0.00 36.97 3.50
349 389 3.717294 ATCGAGCCGGGCAAACCT 61.717 61.111 23.09 0.00 36.97 3.50
350 390 3.508840 CATCGAGCCGGGCAAACC 61.509 66.667 23.09 6.24 0.00 3.27
351 391 2.435938 TCATCGAGCCGGGCAAAC 60.436 61.111 23.09 11.03 0.00 2.93
352 392 2.125147 CTCATCGAGCCGGGCAAA 60.125 61.111 23.09 6.10 0.00 3.68
353 393 4.161295 CCTCATCGAGCCGGGCAA 62.161 66.667 23.09 6.50 0.00 4.52
356 396 4.227134 CACCCTCATCGAGCCGGG 62.227 72.222 2.18 12.65 42.53 5.73
357 397 2.502492 ATCACCCTCATCGAGCCGG 61.502 63.158 0.00 0.00 0.00 6.13
358 398 1.300465 CATCACCCTCATCGAGCCG 60.300 63.158 0.00 0.00 0.00 5.52
359 399 1.596477 GCATCACCCTCATCGAGCC 60.596 63.158 0.00 0.00 0.00 4.70
360 400 1.953138 CGCATCACCCTCATCGAGC 60.953 63.158 0.00 0.00 0.00 5.03
361 401 0.596083 GACGCATCACCCTCATCGAG 60.596 60.000 0.00 0.00 0.00 4.04
362 402 1.037579 AGACGCATCACCCTCATCGA 61.038 55.000 0.00 0.00 0.00 3.59
363 403 0.596083 GAGACGCATCACCCTCATCG 60.596 60.000 0.00 0.00 0.00 3.84
364 404 0.249657 GGAGACGCATCACCCTCATC 60.250 60.000 0.00 0.00 29.67 2.92
365 405 1.826024 GGAGACGCATCACCCTCAT 59.174 57.895 0.00 0.00 29.67 2.90
366 406 3.298958 GGAGACGCATCACCCTCA 58.701 61.111 0.00 0.00 29.67 3.86
378 418 4.200283 CTGGAGCGAGGCGGAGAC 62.200 72.222 0.00 0.00 0.00 3.36
379 419 4.742649 ACTGGAGCGAGGCGGAGA 62.743 66.667 0.00 0.00 0.00 3.71
380 420 4.504916 CACTGGAGCGAGGCGGAG 62.505 72.222 0.00 0.00 0.00 4.63
382 422 3.883744 AAACACTGGAGCGAGGCGG 62.884 63.158 0.00 0.00 0.00 6.13
383 423 2.357517 AAACACTGGAGCGAGGCG 60.358 61.111 0.00 0.00 0.00 5.52
384 424 0.320421 TACAAACACTGGAGCGAGGC 60.320 55.000 0.00 0.00 0.00 4.70
385 425 1.000955 ACTACAAACACTGGAGCGAGG 59.999 52.381 0.00 0.00 40.05 4.63
386 426 2.329379 GACTACAAACACTGGAGCGAG 58.671 52.381 0.00 0.00 40.05 5.03
387 427 1.335597 CGACTACAAACACTGGAGCGA 60.336 52.381 0.00 0.00 40.05 4.93
388 428 1.060713 CGACTACAAACACTGGAGCG 58.939 55.000 0.00 0.00 40.05 5.03
389 429 2.059541 GACGACTACAAACACTGGAGC 58.940 52.381 0.00 0.00 40.05 4.70
390 430 3.364889 TGACGACTACAAACACTGGAG 57.635 47.619 0.00 0.00 42.47 3.86
391 431 4.330944 AATGACGACTACAAACACTGGA 57.669 40.909 0.00 0.00 0.00 3.86
392 432 4.625742 CCTAATGACGACTACAAACACTGG 59.374 45.833 0.00 0.00 0.00 4.00
393 433 5.227908 ACCTAATGACGACTACAAACACTG 58.772 41.667 0.00 0.00 0.00 3.66
394 434 5.464030 ACCTAATGACGACTACAAACACT 57.536 39.130 0.00 0.00 0.00 3.55
395 435 5.464389 ACAACCTAATGACGACTACAAACAC 59.536 40.000 0.00 0.00 0.00 3.32
396 436 5.603596 ACAACCTAATGACGACTACAAACA 58.396 37.500 0.00 0.00 0.00 2.83
397 437 5.924825 AGACAACCTAATGACGACTACAAAC 59.075 40.000 0.00 0.00 0.00 2.93
398 438 6.092955 AGACAACCTAATGACGACTACAAA 57.907 37.500 0.00 0.00 0.00 2.83
399 439 5.717078 AGACAACCTAATGACGACTACAA 57.283 39.130 0.00 0.00 0.00 2.41
400 440 5.163824 CGTAGACAACCTAATGACGACTACA 60.164 44.000 0.00 0.00 0.00 2.74
401 441 5.063944 TCGTAGACAACCTAATGACGACTAC 59.936 44.000 0.00 0.00 0.00 2.73
402 442 5.178061 TCGTAGACAACCTAATGACGACTA 58.822 41.667 0.00 0.00 0.00 2.59
403 443 4.005650 TCGTAGACAACCTAATGACGACT 58.994 43.478 0.00 0.00 0.00 4.18
404 444 4.346734 TCGTAGACAACCTAATGACGAC 57.653 45.455 0.00 0.00 0.00 4.34
405 445 4.379813 GGTTCGTAGACAACCTAATGACGA 60.380 45.833 0.00 0.00 40.33 4.20
406 446 3.855950 GGTTCGTAGACAACCTAATGACG 59.144 47.826 0.00 0.00 40.33 4.35
414 454 6.815142 ACATACATTTAGGTTCGTAGACAACC 59.185 38.462 0.00 0.00 43.38 3.77
415 455 7.823149 ACATACATTTAGGTTCGTAGACAAC 57.177 36.000 0.00 0.00 34.32 3.32
416 456 8.836268 AAACATACATTTAGGTTCGTAGACAA 57.164 30.769 0.00 0.00 30.97 3.18
417 457 8.836268 AAAACATACATTTAGGTTCGTAGACA 57.164 30.769 0.00 0.00 30.97 3.41
457 497 4.783055 TGGCTGTCAAGGTAGTACAAAAA 58.217 39.130 2.06 0.00 0.00 1.94
458 498 4.425180 TGGCTGTCAAGGTAGTACAAAA 57.575 40.909 2.06 0.00 0.00 2.44
459 499 4.425180 TTGGCTGTCAAGGTAGTACAAA 57.575 40.909 2.06 0.00 0.00 2.83
460 500 4.041075 TCATTGGCTGTCAAGGTAGTACAA 59.959 41.667 6.54 0.00 38.95 2.41
461 501 3.580895 TCATTGGCTGTCAAGGTAGTACA 59.419 43.478 6.54 0.00 38.95 2.90
462 502 4.202245 TCATTGGCTGTCAAGGTAGTAC 57.798 45.455 6.54 0.00 38.95 2.73
463 503 4.901197 TTCATTGGCTGTCAAGGTAGTA 57.099 40.909 6.54 0.00 38.95 1.82
464 504 3.788227 TTCATTGGCTGTCAAGGTAGT 57.212 42.857 6.54 0.00 38.95 2.73
465 505 5.674525 TCTATTCATTGGCTGTCAAGGTAG 58.325 41.667 6.54 2.71 38.95 3.18
466 506 5.692115 TCTATTCATTGGCTGTCAAGGTA 57.308 39.130 6.54 0.00 38.95 3.08
467 507 4.574674 TCTATTCATTGGCTGTCAAGGT 57.425 40.909 6.54 0.00 38.95 3.50
468 508 6.528321 TCTATCTATTCATTGGCTGTCAAGG 58.472 40.000 0.00 0.00 38.95 3.61
469 509 8.442632 TTTCTATCTATTCATTGGCTGTCAAG 57.557 34.615 0.00 0.00 38.95 3.02
470 510 8.049117 ACTTTCTATCTATTCATTGGCTGTCAA 58.951 33.333 0.00 0.00 40.01 3.18
471 511 7.568349 ACTTTCTATCTATTCATTGGCTGTCA 58.432 34.615 0.00 0.00 0.00 3.58
472 512 8.443953 AACTTTCTATCTATTCATTGGCTGTC 57.556 34.615 0.00 0.00 0.00 3.51
473 513 7.500559 GGAACTTTCTATCTATTCATTGGCTGT 59.499 37.037 0.00 0.00 0.00 4.40
474 514 7.040823 GGGAACTTTCTATCTATTCATTGGCTG 60.041 40.741 0.00 0.00 0.00 4.85
475 515 7.001073 GGGAACTTTCTATCTATTCATTGGCT 58.999 38.462 0.00 0.00 0.00 4.75
476 516 6.772716 TGGGAACTTTCTATCTATTCATTGGC 59.227 38.462 0.00 0.00 0.00 4.52
477 517 7.995488 ACTGGGAACTTTCTATCTATTCATTGG 59.005 37.037 0.00 0.00 0.00 3.16
483 523 9.807921 TTTTTGACTGGGAACTTTCTATCTATT 57.192 29.630 0.00 0.00 0.00 1.73
515 555 9.449719 TTGGTGAGGAAAACTTTCTATCTATTC 57.550 33.333 2.41 0.00 37.35 1.75
516 556 9.807921 TTTGGTGAGGAAAACTTTCTATCTATT 57.192 29.630 2.41 0.00 37.35 1.73
517 557 9.981460 ATTTGGTGAGGAAAACTTTCTATCTAT 57.019 29.630 2.41 0.00 37.35 1.98
519 559 9.807921 TTATTTGGTGAGGAAAACTTTCTATCT 57.192 29.630 2.41 0.00 37.35 1.98
523 563 9.599866 CTTTTTATTTGGTGAGGAAAACTTTCT 57.400 29.630 2.41 0.00 37.35 2.52
524 564 9.378551 ACTTTTTATTTGGTGAGGAAAACTTTC 57.621 29.630 0.00 0.00 36.46 2.62
525 565 9.733556 AACTTTTTATTTGGTGAGGAAAACTTT 57.266 25.926 0.00 0.00 0.00 2.66
526 566 9.161629 CAACTTTTTATTTGGTGAGGAAAACTT 57.838 29.630 0.00 0.00 0.00 2.66
527 567 7.768582 CCAACTTTTTATTTGGTGAGGAAAACT 59.231 33.333 0.00 0.00 37.98 2.66
528 568 7.011950 CCCAACTTTTTATTTGGTGAGGAAAAC 59.988 37.037 0.00 0.00 40.75 2.43
530 570 6.157123 ACCCAACTTTTTATTTGGTGAGGAAA 59.843 34.615 0.00 0.00 40.75 3.13
531 571 5.663556 ACCCAACTTTTTATTTGGTGAGGAA 59.336 36.000 0.00 0.00 40.75 3.36
532 572 5.212745 ACCCAACTTTTTATTTGGTGAGGA 58.787 37.500 0.00 0.00 40.75 3.71
533 573 5.304357 AGACCCAACTTTTTATTTGGTGAGG 59.696 40.000 0.00 0.00 40.75 3.86
534 574 6.183360 ACAGACCCAACTTTTTATTTGGTGAG 60.183 38.462 0.00 0.00 40.75 3.51
536 576 5.912892 ACAGACCCAACTTTTTATTTGGTG 58.087 37.500 0.00 0.00 40.75 4.17
538 578 7.722363 ACTTACAGACCCAACTTTTTATTTGG 58.278 34.615 0.00 0.00 41.83 3.28
540 580 9.411189 TGTACTTACAGACCCAACTTTTTATTT 57.589 29.630 0.00 0.00 0.00 1.40
543 583 9.715121 CTATGTACTTACAGACCCAACTTTTTA 57.285 33.333 0.00 0.00 39.92 1.52
544 584 7.664318 CCTATGTACTTACAGACCCAACTTTTT 59.336 37.037 0.00 0.00 39.92 1.94
545 585 7.166167 CCTATGTACTTACAGACCCAACTTTT 58.834 38.462 0.00 0.00 39.92 2.27
547 587 5.189145 CCCTATGTACTTACAGACCCAACTT 59.811 44.000 0.00 0.00 39.92 2.66
548 588 4.715297 CCCTATGTACTTACAGACCCAACT 59.285 45.833 0.00 0.00 39.92 3.16
549 589 4.713321 TCCCTATGTACTTACAGACCCAAC 59.287 45.833 0.00 0.00 39.92 3.77
550 590 4.713321 GTCCCTATGTACTTACAGACCCAA 59.287 45.833 0.00 0.00 39.92 4.12
551 591 4.016851 AGTCCCTATGTACTTACAGACCCA 60.017 45.833 0.00 0.00 39.92 4.51
566 606 4.130118 CCGTACGTACTTACAGTCCCTAT 58.870 47.826 22.55 0.00 0.00 2.57
709 1351 8.398665 CAGCTTAATTCTGGGACTTAAACATAC 58.601 37.037 0.00 0.00 0.00 2.39
802 1458 3.056891 GCTAGCTAGGCTTCTCACTATGG 60.057 52.174 22.10 0.00 40.44 2.74
852 1508 0.039074 CGCTATCTCGATGGTGGGAC 60.039 60.000 0.00 0.00 0.00 4.46
880 1557 2.725699 CTACGACGCGCATGCACAA 61.726 57.895 19.57 0.00 42.97 3.33
926 1603 2.886862 ATTGGACGCAGAGATCAGAG 57.113 50.000 0.00 0.00 0.00 3.35
991 1668 2.854963 CTCCATTGCCATGCTAGCTAA 58.145 47.619 17.23 0.00 0.00 3.09
1017 1694 2.110967 CAGCATTGTGGAGGCTCCG 61.111 63.158 27.58 14.45 42.82 4.63
1069 1746 4.400961 GGTCTTGCGCCTGAGCCT 62.401 66.667 4.18 0.00 36.02 4.58
1205 1882 1.376609 GACGATGTTGGTGCCCATCC 61.377 60.000 0.00 0.00 35.17 3.51
1216 1893 2.809601 GCGGACGCAGACGATGTT 60.810 61.111 12.31 0.00 43.93 2.71
1257 1934 2.858476 ATGGTGGGGCAGGTGACA 60.858 61.111 0.00 0.00 0.00 3.58
1722 2417 0.264955 ACCATGGGAGGTAGTCGGAT 59.735 55.000 18.09 0.00 40.98 4.18
1737 2432 2.031919 TCGAAGCCGCACAACCAT 59.968 55.556 0.00 0.00 35.37 3.55
1741 2436 2.110213 AAGGTCGAAGCCGCACAA 59.890 55.556 0.00 0.00 35.37 3.33
1744 2439 2.357034 GTCAAGGTCGAAGCCGCA 60.357 61.111 0.00 0.00 35.37 5.69
1758 2453 0.178767 CCATCTTCTCATGGCCGTCA 59.821 55.000 0.00 0.00 37.12 4.35
2003 2698 0.880441 TGTGACATTCGTTGGCCATG 59.120 50.000 6.09 3.41 29.16 3.66
2004 2699 0.881118 GTGTGACATTCGTTGGCCAT 59.119 50.000 6.09 0.00 29.16 4.40
2005 2700 0.464554 TGTGTGACATTCGTTGGCCA 60.465 50.000 0.00 0.00 29.16 5.36
2006 2701 0.881118 ATGTGTGACATTCGTTGGCC 59.119 50.000 0.00 0.00 34.67 5.36
2041 2738 7.276658 CGCATCAATTAGTTAGTCAACTCTCTT 59.723 37.037 0.00 0.00 44.04 2.85
2042 2739 6.754209 CGCATCAATTAGTTAGTCAACTCTCT 59.246 38.462 0.00 0.00 44.04 3.10
2045 2742 6.648725 ACGCATCAATTAGTTAGTCAACTC 57.351 37.500 0.00 0.00 44.04 3.01
2057 2758 2.804421 CGTCAGCAACGCATCAATTA 57.196 45.000 0.00 0.00 45.76 1.40
2072 2773 0.610687 TACCATGTCATGCCACGTCA 59.389 50.000 7.35 0.00 0.00 4.35
2073 2774 1.290203 CTACCATGTCATGCCACGTC 58.710 55.000 7.35 0.00 0.00 4.34
2107 2817 1.963855 CGATGGGTTGTCAACGGCA 60.964 57.895 9.57 0.00 30.89 5.69
2134 2844 4.664267 TCTGCCAGGGCCCACTCT 62.664 66.667 27.56 0.00 41.09 3.24
2189 2899 2.579201 CACGCGGTCCATCTCCTT 59.421 61.111 12.47 0.00 0.00 3.36
2296 3006 3.698463 ACGTTGAAAGGCGCGACG 61.698 61.111 12.10 12.00 45.99 5.12
2443 3153 0.529773 TCGTATGAATGTGGCGCTCC 60.530 55.000 7.64 0.00 0.00 4.70
2456 3166 2.127251 CACATCATCCGTGGTCGTATG 58.873 52.381 0.00 0.00 35.29 2.39
2477 3190 1.000827 CAGCTCGTTCTCTGTGAGTGT 60.001 52.381 0.00 0.00 32.32 3.55
2654 3367 2.025037 TCAATGGCTTGGCTAGGAACAT 60.025 45.455 0.00 0.00 32.95 2.71
2662 3375 0.750850 GCATCATCAATGGCTTGGCT 59.249 50.000 0.00 0.00 35.77 4.75
2765 3478 2.000447 GGTGACAATCAACCGAGCTAC 59.000 52.381 0.00 0.00 0.00 3.58
2844 3557 1.280998 CCATGAACCGGGACTAAAGGT 59.719 52.381 6.32 0.00 40.50 3.50
2864 3577 1.514553 CGACCCTTTAGTCCCGGTC 59.485 63.158 0.00 0.00 41.20 4.79
3070 3794 2.335134 AAAACCCCCAAACCCCCTCC 62.335 60.000 0.00 0.00 0.00 4.30
3071 3795 1.125093 CAAAACCCCCAAACCCCCTC 61.125 60.000 0.00 0.00 0.00 4.30
3151 3881 2.483876 CAAGCACGGACAAAAGAGAGA 58.516 47.619 0.00 0.00 0.00 3.10
3407 4184 2.764010 AGAATACTATGTGGACCACGCA 59.236 45.455 19.67 8.80 44.94 5.24
3507 4284 0.746563 TTTCGGATGCGGGATGAACC 60.747 55.000 6.82 0.00 38.08 3.62
3660 4477 1.525197 CGAAGCACAAGAAGCGTTGTA 59.475 47.619 2.38 0.00 38.65 2.41
3661 4478 0.304705 CGAAGCACAAGAAGCGTTGT 59.695 50.000 0.00 0.00 41.47 3.32
3662 4479 0.304705 ACGAAGCACAAGAAGCGTTG 59.695 50.000 0.00 0.00 37.01 4.10
3663 4480 0.582005 GACGAAGCACAAGAAGCGTT 59.418 50.000 0.00 0.00 37.01 4.84
3664 4481 0.249489 AGACGAAGCACAAGAAGCGT 60.249 50.000 0.00 0.00 37.01 5.07
3665 4482 0.436531 GAGACGAAGCACAAGAAGCG 59.563 55.000 0.00 0.00 37.01 4.68
3666 4483 0.436531 CGAGACGAAGCACAAGAAGC 59.563 55.000 0.00 0.00 0.00 3.86
3667 4484 1.063806 CCGAGACGAAGCACAAGAAG 58.936 55.000 0.00 0.00 0.00 2.85
3668 4485 0.319555 CCCGAGACGAAGCACAAGAA 60.320 55.000 0.00 0.00 0.00 2.52
3669 4486 1.289066 CCCGAGACGAAGCACAAGA 59.711 57.895 0.00 0.00 0.00 3.02
3670 4487 1.738099 CCCCGAGACGAAGCACAAG 60.738 63.158 0.00 0.00 0.00 3.16
3671 4488 2.342279 CCCCGAGACGAAGCACAA 59.658 61.111 0.00 0.00 0.00 3.33
3672 4489 4.373116 GCCCCGAGACGAAGCACA 62.373 66.667 0.00 0.00 0.00 4.57
3685 4502 3.873812 CTATGGACACCCCGCCCC 61.874 72.222 0.00 0.00 37.93 5.80
3686 4503 2.206182 AAACTATGGACACCCCGCCC 62.206 60.000 0.00 0.00 37.93 6.13
3687 4504 0.746923 GAAACTATGGACACCCCGCC 60.747 60.000 0.00 0.00 37.93 6.13
3688 4505 0.252197 AGAAACTATGGACACCCCGC 59.748 55.000 0.00 0.00 37.93 6.13
3689 4506 2.498481 TGTAGAAACTATGGACACCCCG 59.502 50.000 0.00 0.00 37.93 5.73
3690 4507 4.563140 TTGTAGAAACTATGGACACCCC 57.437 45.455 0.00 0.00 0.00 4.95
3691 4508 8.747538 AATATTTGTAGAAACTATGGACACCC 57.252 34.615 0.00 0.00 0.00 4.61
3701 4518 9.855021 GCCATGTTGTAAATATTTGTAGAAACT 57.145 29.630 11.05 0.00 0.00 2.66
3702 4519 9.632807 TGCCATGTTGTAAATATTTGTAGAAAC 57.367 29.630 11.05 8.17 0.00 2.78


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.