Multiple sequence alignment - TraesCS5B01G547900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G547900 chr5B 100.000 5183 0 0 1 5183 700745366 700740184 0.000000e+00 9572.0
1 TraesCS5B01G547900 chr5B 85.000 900 123 5 3455 4342 705071823 705070924 0.000000e+00 904.0
2 TraesCS5B01G547900 chr5B 77.145 1632 261 60 3005 4577 705082276 705080698 0.000000e+00 845.0
3 TraesCS5B01G547900 chr5B 78.634 571 95 14 2432 2987 705072899 705072341 2.300000e-93 353.0
4 TraesCS5B01G547900 chr5B 88.050 159 8 2 5024 5182 469134343 469134490 1.480000e-40 178.0
5 TraesCS5B01G547900 chr5B 81.250 192 33 2 47 236 504494349 504494159 8.990000e-33 152.0
6 TraesCS5B01G547900 chr4A 97.054 2478 62 5 1812 4285 620556278 620558748 0.000000e+00 4161.0
7 TraesCS5B01G547900 chr4A 86.344 1633 127 39 8 1590 620554155 620555741 0.000000e+00 1692.0
8 TraesCS5B01G547900 chr4A 80.589 984 148 25 3454 4399 609942577 609943555 0.000000e+00 719.0
9 TraesCS5B01G547900 chr4A 85.739 568 77 3 4450 5017 620581254 620581817 9.610000e-167 597.0
10 TraesCS5B01G547900 chr4A 77.134 984 176 34 1975 2936 609941221 609942177 4.600000e-145 525.0
11 TraesCS5B01G547900 chr4A 94.444 198 11 0 4450 4647 609916503 609916700 6.520000e-79 305.0
12 TraesCS5B01G547900 chr4A 85.635 181 17 2 4270 4442 620560109 620560288 1.150000e-41 182.0
13 TraesCS5B01G547900 chr5D 84.711 2178 245 47 2309 4435 558056746 558054606 0.000000e+00 2097.0
14 TraesCS5B01G547900 chr5D 77.018 1053 206 21 1978 3003 558067424 558066381 5.820000e-159 571.0
15 TraesCS5B01G547900 chr5D 83.891 329 36 9 3023 3350 558066325 558066013 1.090000e-76 298.0
16 TraesCS5B01G547900 chr5D 82.166 314 48 7 4713 5023 397023876 397023568 3.980000e-66 263.0
17 TraesCS5B01G547900 chr5D 89.937 159 6 2 5024 5182 558844418 558844270 4.090000e-46 196.0
18 TraesCS5B01G547900 chr5D 85.443 158 13 1 5024 5181 557578894 557579041 6.950000e-34 156.0
19 TraesCS5B01G547900 chr5D 82.840 169 28 1 19 186 251275760 251275928 3.230000e-32 150.0
20 TraesCS5B01G547900 chr5D 82.803 157 15 5 5022 5177 42128022 42127877 4.210000e-26 130.0
21 TraesCS5B01G547900 chr5D 78.512 121 25 1 3025 3145 393767648 393767767 1.550000e-10 78.7
22 TraesCS5B01G547900 chr5D 92.683 41 3 0 336 376 475239204 475239244 5.600000e-05 60.2
23 TraesCS5B01G547900 chr3D 83.478 345 45 12 4681 5021 598360788 598361124 1.400000e-80 311.0
24 TraesCS5B01G547900 chr3D 83.901 323 40 11 4707 5023 19293251 19293567 1.090000e-76 298.0
25 TraesCS5B01G547900 chr3D 85.000 160 14 1 5023 5182 444894270 444894121 2.500000e-33 154.0
26 TraesCS5B01G547900 chr3D 90.909 44 2 1 337 378 1882065 1882022 2.020000e-04 58.4
27 TraesCS5B01G547900 chr2B 77.840 537 88 20 2471 2996 754554801 754554285 2.350000e-78 303.0
28 TraesCS5B01G547900 chr2B 73.723 685 147 20 2491 3154 105414303 105413631 2.410000e-58 237.0
29 TraesCS5B01G547900 chr2B 88.125 160 8 2 5024 5183 4865060 4865208 4.120000e-41 180.0
30 TraesCS5B01G547900 chr2B 88.125 160 8 2 5024 5183 11138813 11138961 4.120000e-41 180.0
31 TraesCS5B01G547900 chr2B 83.761 117 17 2 3233 3348 754554060 754553945 5.490000e-20 110.0
32 TraesCS5B01G547900 chr3A 83.871 310 40 6 4714 5017 528524041 528524346 2.360000e-73 287.0
33 TraesCS5B01G547900 chr3A 90.244 41 3 1 336 376 266372873 266372912 9.000000e-03 52.8
34 TraesCS5B01G547900 chr1D 82.500 320 49 6 4706 5023 416091429 416091743 1.840000e-69 274.0
35 TraesCS5B01G547900 chr1D 82.692 312 48 5 4713 5023 420237128 420236822 6.610000e-69 272.0
36 TraesCS5B01G547900 chr1D 73.438 704 154 23 2468 3154 342140148 342140835 3.120000e-57 233.0
37 TraesCS5B01G547900 chr1D 89.308 159 5 4 5024 5182 203959258 203959404 6.850000e-44 189.0
38 TraesCS5B01G547900 chr1D 87.421 159 10 1 5024 5182 16495319 16495171 1.920000e-39 174.0
39 TraesCS5B01G547900 chr1D 86.228 167 13 1 5016 5182 471917255 471917411 6.900000e-39 172.0
40 TraesCS5B01G547900 chr2D 80.655 336 51 11 2641 2972 586330695 586331020 1.110000e-61 248.0
41 TraesCS5B01G547900 chr2D 83.133 166 14 5 5014 5177 542877263 542877110 7.000000e-29 139.0
42 TraesCS5B01G547900 chr1A 85.652 230 31 2 8 236 30200290 30200062 1.860000e-59 241.0
43 TraesCS5B01G547900 chr1A 80.435 322 55 7 4705 5023 513567495 513567811 6.710000e-59 239.0
44 TraesCS5B01G547900 chr1A 79.221 231 29 4 8 237 30216281 30216069 5.410000e-30 143.0
45 TraesCS5B01G547900 chr7D 79.762 336 61 6 4685 5017 2626541 2626872 2.410000e-58 237.0
46 TraesCS5B01G547900 chr7D 87.730 163 8 6 5020 5182 633669156 633669006 4.120000e-41 180.0
47 TraesCS5B01G547900 chr7D 88.525 122 3 4 5061 5182 109732616 109732506 2.520000e-28 137.0
48 TraesCS5B01G547900 chr7D 78.182 220 42 6 19 235 228231586 228231802 9.050000e-28 135.0
49 TraesCS5B01G547900 chr7B 89.375 160 7 2 5024 5183 681858716 681858865 5.300000e-45 193.0
50 TraesCS5B01G547900 chr7B 88.125 160 9 5 5022 5181 739878354 739878205 1.150000e-41 182.0
51 TraesCS5B01G547900 chr3B 88.679 159 7 3 5024 5182 15024163 15024016 3.190000e-42 183.0
52 TraesCS5B01G547900 chr3B 81.250 208 37 2 9 216 638946499 638946294 3.210000e-37 167.0
53 TraesCS5B01G547900 chrUn 88.125 160 9 5 5022 5181 159058151 159058300 1.150000e-41 182.0
54 TraesCS5B01G547900 chrUn 88.125 160 9 5 5022 5181 428735142 428734993 1.150000e-41 182.0
55 TraesCS5B01G547900 chrUn 88.125 160 9 5 5022 5181 454780013 454780162 1.150000e-41 182.0
56 TraesCS5B01G547900 chr5A 81.944 216 38 1 20 235 498845668 498845454 1.150000e-41 182.0
57 TraesCS5B01G547900 chr5A 84.270 178 25 1 8 185 77747386 77747560 2.480000e-38 171.0
58 TraesCS5B01G547900 chr4B 74.769 432 94 11 3758 4183 2015176 2015598 4.120000e-41 180.0
59 TraesCS5B01G547900 chr4B 79.583 240 40 7 8 246 142724025 142723794 4.150000e-36 163.0
60 TraesCS5B01G547900 chr2A 80.687 233 39 6 8 236 177704178 177704408 5.330000e-40 176.0
61 TraesCS5B01G547900 chr1B 87.742 155 7 6 5025 5179 33996710 33996852 2.480000e-38 171.0
62 TraesCS5B01G547900 chr1B 85.185 162 20 4 5023 5183 577956585 577956427 4.150000e-36 163.0
63 TraesCS5B01G547900 chr1B 92.500 40 2 1 337 376 60515761 60515799 7.250000e-04 56.5
64 TraesCS5B01G547900 chr6A 86.503 163 11 6 5021 5182 612155979 612155827 8.930000e-38 169.0
65 TraesCS5B01G547900 chr4D 84.024 169 15 5 5016 5182 97610721 97610879 8.990000e-33 152.0
66 TraesCS5B01G547900 chr4D 88.525 122 4 1 5061 5182 506173622 506173733 7.000000e-29 139.0
67 TraesCS5B01G547900 chr4D 83.019 159 16 2 5024 5182 8591677 8591530 3.260000e-27 134.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G547900 chr5B 700740184 700745366 5182 True 9572.000000 9572 100.000000 1 5183 1 chr5B.!!$R2 5182
1 TraesCS5B01G547900 chr5B 705080698 705082276 1578 True 845.000000 845 77.145000 3005 4577 1 chr5B.!!$R3 1572
2 TraesCS5B01G547900 chr5B 705070924 705072899 1975 True 628.500000 904 81.817000 2432 4342 2 chr5B.!!$R4 1910
3 TraesCS5B01G547900 chr4A 620554155 620560288 6133 False 2011.666667 4161 89.677667 8 4442 3 chr4A.!!$F4 4434
4 TraesCS5B01G547900 chr4A 609941221 609943555 2334 False 622.000000 719 78.861500 1975 4399 2 chr4A.!!$F3 2424
5 TraesCS5B01G547900 chr4A 620581254 620581817 563 False 597.000000 597 85.739000 4450 5017 1 chr4A.!!$F2 567
6 TraesCS5B01G547900 chr5D 558054606 558056746 2140 True 2097.000000 2097 84.711000 2309 4435 1 chr5D.!!$R3 2126
7 TraesCS5B01G547900 chr5D 558066013 558067424 1411 True 434.500000 571 80.454500 1978 3350 2 chr5D.!!$R5 1372
8 TraesCS5B01G547900 chr2B 105413631 105414303 672 True 237.000000 237 73.723000 2491 3154 1 chr2B.!!$R1 663
9 TraesCS5B01G547900 chr2B 754553945 754554801 856 True 206.500000 303 80.800500 2471 3348 2 chr2B.!!$R2 877
10 TraesCS5B01G547900 chr1D 342140148 342140835 687 False 233.000000 233 73.438000 2468 3154 1 chr1D.!!$F2 686

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
777 782 0.245539 TCTTTTACAGACGAGCGGGG 59.754 55.000 0.0 0.0 0.0 5.73 F
1689 1936 0.250124 TCCGAACGCATGTCCACTTT 60.250 50.000 0.0 0.0 0.0 2.66 F
2328 2698 1.002033 GACAACAAGCAGCTCACAAGG 60.002 52.381 0.0 0.0 0.0 3.61 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1942 2311 1.053424 TCACCAGGAGCGTTAACCTT 58.947 50.000 0.00 0.00 33.91 3.50 R
3154 3648 0.590195 CTCGCTTTGTTTCTGCTGCT 59.410 50.000 0.00 0.00 0.00 4.24 R
4184 4757 1.727880 GAAACTATGCACGCGGTGTTA 59.272 47.619 12.47 0.97 35.75 2.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
53 54 2.877786 CAGTGCCAAACTACATCACACA 59.122 45.455 0.00 0.00 36.83 3.72
55 56 3.503363 AGTGCCAAACTACATCACACATG 59.497 43.478 0.00 0.00 37.36 3.21
58 59 5.049060 GTGCCAAACTACATCACACATGTAA 60.049 40.000 0.00 0.00 34.50 2.41
59 60 5.532779 TGCCAAACTACATCACACATGTAAA 59.467 36.000 0.00 0.00 34.50 2.01
160 161 2.544768 ACTTGGTCAGTGGGCTTCT 58.455 52.632 0.00 0.00 32.83 2.85
162 163 2.054799 ACTTGGTCAGTGGGCTTCTAA 58.945 47.619 0.00 0.00 32.83 2.10
180 181 7.439655 GGCTTCTAATGTGGTCTACTTTCTATG 59.560 40.741 0.00 0.00 0.00 2.23
181 182 8.198109 GCTTCTAATGTGGTCTACTTTCTATGA 58.802 37.037 0.00 0.00 0.00 2.15
231 232 9.841295 AACTTATTTCAGGTAGTAACTTCACAA 57.159 29.630 0.00 0.00 0.00 3.33
288 289 6.908870 TTCAGAATGTGCTATGACATGTAC 57.091 37.500 0.00 0.00 36.66 2.90
297 298 2.510691 GACATGTACGGGGTGCCG 60.511 66.667 0.00 0.00 39.31 5.69
328 330 6.062095 GCTATGATTATTGTGTTAGGGGTGT 58.938 40.000 0.00 0.00 0.00 4.16
332 334 7.201702 TGATTATTGTGTTAGGGGTGTATGA 57.798 36.000 0.00 0.00 0.00 2.15
333 335 7.051623 TGATTATTGTGTTAGGGGTGTATGAC 58.948 38.462 0.00 0.00 0.00 3.06
365 369 0.525311 CATTGCAACACACGGGCATA 59.475 50.000 0.00 0.00 37.39 3.14
405 409 2.119457 CGAAAGTGCAAAGGCTTCAAC 58.881 47.619 0.00 0.00 41.91 3.18
411 415 1.518903 GCAAAGGCTTCAACCTCGCT 61.519 55.000 0.00 0.00 39.93 4.93
428 432 5.575995 ACCTCGCTTTATTCGTAAAGAACTC 59.424 40.000 11.07 0.00 42.39 3.01
432 436 8.025243 TCGCTTTATTCGTAAAGAACTCAAAT 57.975 30.769 11.07 0.00 42.39 2.32
461 465 7.627585 CACAAGATAATTGTGGTGTCAAAAG 57.372 36.000 11.90 0.00 44.33 2.27
467 471 8.637986 AGATAATTGTGGTGTCAAAAGCTAAAA 58.362 29.630 0.00 0.00 0.00 1.52
495 499 2.669300 GGGACGGAGAAAGTACTTCC 57.331 55.000 8.95 5.26 34.21 3.46
496 500 2.177734 GGGACGGAGAAAGTACTTCCT 58.822 52.381 8.95 0.00 34.21 3.36
497 501 2.166050 GGGACGGAGAAAGTACTTCCTC 59.834 54.545 13.14 13.14 34.21 3.71
498 502 3.090790 GGACGGAGAAAGTACTTCCTCT 58.909 50.000 19.78 14.50 34.21 3.69
499 503 3.510753 GGACGGAGAAAGTACTTCCTCTT 59.489 47.826 19.78 8.69 34.21 2.85
500 504 4.704057 GGACGGAGAAAGTACTTCCTCTTA 59.296 45.833 19.78 0.00 34.21 2.10
501 505 5.163632 GGACGGAGAAAGTACTTCCTCTTAG 60.164 48.000 19.78 14.01 34.21 2.18
556 561 6.803807 CCTTGCTCTGTTTCTTAAAGCATTAC 59.196 38.462 0.00 0.00 42.11 1.89
563 568 9.278978 TCTGTTTCTTAAAGCATTACATGTGTA 57.721 29.630 9.11 0.00 0.00 2.90
564 569 9.329913 CTGTTTCTTAAAGCATTACATGTGTAC 57.670 33.333 9.11 0.00 0.00 2.90
567 572 7.661127 TCTTAAAGCATTACATGTGTACGTT 57.339 32.000 9.11 2.86 0.00 3.99
619 624 2.957491 TGTGGTTTTGCAGACCTTTG 57.043 45.000 18.64 0.00 38.04 2.77
746 751 5.825593 AGAAAGAAGATGTCACCACCTTA 57.174 39.130 0.00 0.00 0.00 2.69
752 757 4.236527 AGATGTCACCACCTTATTTCCC 57.763 45.455 0.00 0.00 0.00 3.97
756 761 4.810345 TGTCACCACCTTATTTCCCTTTT 58.190 39.130 0.00 0.00 0.00 2.27
775 780 4.461992 TTTTTCTTTTACAGACGAGCGG 57.538 40.909 0.00 0.00 0.00 5.52
776 781 2.074547 TTCTTTTACAGACGAGCGGG 57.925 50.000 0.00 0.00 0.00 6.13
777 782 0.245539 TCTTTTACAGACGAGCGGGG 59.754 55.000 0.00 0.00 0.00 5.73
778 783 0.739813 CTTTTACAGACGAGCGGGGG 60.740 60.000 0.00 0.00 0.00 5.40
779 784 1.186917 TTTTACAGACGAGCGGGGGA 61.187 55.000 0.00 0.00 0.00 4.81
780 785 1.601419 TTTACAGACGAGCGGGGGAG 61.601 60.000 0.00 0.00 0.00 4.30
781 786 2.488771 TTACAGACGAGCGGGGGAGA 62.489 60.000 0.00 0.00 0.00 3.71
792 797 0.771127 CGGGGGAGAGAGAGAGAGAT 59.229 60.000 0.00 0.00 0.00 2.75
796 801 2.290071 GGGGAGAGAGAGAGAGATACCG 60.290 59.091 0.00 0.00 0.00 4.02
800 805 4.232221 GAGAGAGAGAGAGATACCGTACG 58.768 52.174 8.69 8.69 0.00 3.67
821 826 7.882734 CGTACGTAATTAACAAGTAAACACGAG 59.117 37.037 7.22 0.00 36.86 4.18
822 827 7.109006 ACGTAATTAACAAGTAAACACGAGG 57.891 36.000 0.00 0.00 36.86 4.63
902 907 0.905337 CAAAGGGAGGGAGAGACCGT 60.905 60.000 0.00 0.00 40.11 4.83
950 967 2.677003 CGGTGTAAACTGCGGCTGG 61.677 63.158 11.64 2.14 0.00 4.85
1005 1022 0.982852 TCGATCAGCAGGGAATGGGT 60.983 55.000 0.00 0.00 0.00 4.51
1134 1159 3.922171 TTTGTTCCAACCAAGCCAAAT 57.078 38.095 0.00 0.00 0.00 2.32
1143 1168 0.675083 CCAAGCCAAATGCAGTGTCA 59.325 50.000 0.00 0.00 44.83 3.58
1148 1173 3.424703 AGCCAAATGCAGTGTCATAAGT 58.575 40.909 0.00 0.00 44.83 2.24
1149 1174 3.441572 AGCCAAATGCAGTGTCATAAGTC 59.558 43.478 0.00 0.00 44.83 3.01
1150 1175 3.441572 GCCAAATGCAGTGTCATAAGTCT 59.558 43.478 0.00 0.00 40.77 3.24
1159 1184 5.623368 GCAGTGTCATAAGTCTTGCTAGAGT 60.623 44.000 0.00 0.00 35.53 3.24
1161 1186 6.870965 CAGTGTCATAAGTCTTGCTAGAGTTT 59.129 38.462 20.78 10.77 40.38 2.66
1162 1187 8.029522 CAGTGTCATAAGTCTTGCTAGAGTTTA 58.970 37.037 20.78 12.35 40.38 2.01
1165 1190 7.178628 TGTCATAAGTCTTGCTAGAGTTTAGGT 59.821 37.037 20.78 2.07 40.38 3.08
1188 1213 0.941542 TGCGTGTGTTTCTGTTAGCC 59.058 50.000 0.00 0.00 0.00 3.93
1211 1236 2.019984 GGGCATCCTAACTTTGCAGAG 58.980 52.381 2.03 2.03 38.12 3.35
1213 1238 3.549794 GGCATCCTAACTTTGCAGAGAT 58.450 45.455 11.85 1.15 38.12 2.75
1220 1245 2.086054 ACTTTGCAGAGATCGGACAC 57.914 50.000 11.85 0.00 0.00 3.67
1224 1249 2.161486 GCAGAGATCGGACACGTGC 61.161 63.158 17.22 8.51 41.85 5.34
1230 1255 1.749063 AGATCGGACACGTGCTCATTA 59.251 47.619 17.22 0.00 41.85 1.90
1237 1262 4.591202 GGACACGTGCTCATTATGATTTG 58.409 43.478 17.22 0.00 0.00 2.32
1245 1270 7.931407 ACGTGCTCATTATGATTTGTATCCTTA 59.069 33.333 0.00 0.00 0.00 2.69
1246 1271 8.773645 CGTGCTCATTATGATTTGTATCCTTAA 58.226 33.333 0.00 0.00 0.00 1.85
1255 1280 5.991606 TGATTTGTATCCTTAAGATGCTCCG 59.008 40.000 3.36 0.00 38.34 4.63
1272 1298 7.917505 AGATGCTCCGTTTTGATCAATAAAATC 59.082 33.333 9.40 5.43 30.62 2.17
1273 1299 6.329496 TGCTCCGTTTTGATCAATAAAATCC 58.671 36.000 9.40 0.00 30.62 3.01
1275 1301 6.811170 GCTCCGTTTTGATCAATAAAATCCAA 59.189 34.615 9.40 0.00 30.62 3.53
1311 1337 1.876322 AAGAGTTGAGCTGTGCACTC 58.124 50.000 19.41 8.06 34.62 3.51
1319 1345 0.319728 AGCTGTGCACTCGAACTCAT 59.680 50.000 19.41 0.00 0.00 2.90
1329 1355 7.549134 TGTGCACTCGAACTCATTAGAAATATT 59.451 33.333 19.41 0.00 0.00 1.28
1400 1447 3.796178 TCAGTTTCTTTGTTTTGCGATGC 59.204 39.130 0.00 0.00 0.00 3.91
1402 1449 1.764851 TTCTTTGTTTTGCGATGCCG 58.235 45.000 0.00 0.00 39.16 5.69
1430 1477 8.534496 AGAGCATGTATATACACTGATATTGCA 58.466 33.333 25.68 2.17 39.30 4.08
1449 1496 6.690194 TTGCATTAACCATTTGTTTTTGCT 57.310 29.167 0.00 0.00 41.00 3.91
1463 1510 8.973835 TTTGTTTTTGCTAATTATTAGTCCCG 57.026 30.769 12.82 0.00 35.66 5.14
1465 1512 7.754625 TGTTTTTGCTAATTATTAGTCCCGTC 58.245 34.615 12.82 2.87 35.66 4.79
1466 1513 7.608761 TGTTTTTGCTAATTATTAGTCCCGTCT 59.391 33.333 12.82 0.00 35.66 4.18
1467 1514 8.456471 GTTTTTGCTAATTATTAGTCCCGTCTT 58.544 33.333 12.82 0.00 35.66 3.01
1468 1515 9.669887 TTTTTGCTAATTATTAGTCCCGTCTTA 57.330 29.630 12.82 0.00 35.66 2.10
1469 1516 8.882415 TTTGCTAATTATTAGTCCCGTCTTAG 57.118 34.615 12.82 0.00 35.66 2.18
1470 1517 6.453092 TGCTAATTATTAGTCCCGTCTTAGC 58.547 40.000 12.82 0.00 39.95 3.09
1471 1518 6.267014 TGCTAATTATTAGTCCCGTCTTAGCT 59.733 38.462 12.82 0.00 40.11 3.32
1472 1519 6.807720 GCTAATTATTAGTCCCGTCTTAGCTC 59.192 42.308 12.82 0.00 37.75 4.09
1482 1529 4.135306 CCCGTCTTAGCTCTACATACTGA 58.865 47.826 0.00 0.00 0.00 3.41
1590 1637 9.449719 CAGAAAGTATGGTAGTTTTTATGAGGT 57.550 33.333 0.00 0.00 31.78 3.85
1591 1638 9.668497 AGAAAGTATGGTAGTTTTTATGAGGTC 57.332 33.333 0.00 0.00 31.78 3.85
1592 1639 9.444600 GAAAGTATGGTAGTTTTTATGAGGTCA 57.555 33.333 0.00 0.00 31.78 4.02
1593 1640 8.788325 AAGTATGGTAGTTTTTATGAGGTCAC 57.212 34.615 0.00 0.00 0.00 3.67
1594 1641 7.336396 AGTATGGTAGTTTTTATGAGGTCACC 58.664 38.462 0.00 0.00 0.00 4.02
1595 1642 4.913784 TGGTAGTTTTTATGAGGTCACCC 58.086 43.478 0.00 0.00 0.00 4.61
1596 1643 4.263594 TGGTAGTTTTTATGAGGTCACCCC 60.264 45.833 0.00 0.00 0.00 4.95
1606 1653 2.112279 AGGTCACCCCTCACTAAACA 57.888 50.000 0.00 0.00 40.71 2.83
1607 1654 2.632537 AGGTCACCCCTCACTAAACAT 58.367 47.619 0.00 0.00 40.71 2.71
1608 1655 3.798515 AGGTCACCCCTCACTAAACATA 58.201 45.455 0.00 0.00 40.71 2.29
1609 1656 4.371681 AGGTCACCCCTCACTAAACATAT 58.628 43.478 0.00 0.00 40.71 1.78
1610 1657 5.535029 AGGTCACCCCTCACTAAACATATA 58.465 41.667 0.00 0.00 40.71 0.86
1611 1658 5.968167 AGGTCACCCCTCACTAAACATATAA 59.032 40.000 0.00 0.00 40.71 0.98
1612 1659 6.099845 AGGTCACCCCTCACTAAACATATAAG 59.900 42.308 0.00 0.00 40.71 1.73
1613 1660 6.289064 GTCACCCCTCACTAAACATATAAGG 58.711 44.000 0.00 0.00 0.00 2.69
1614 1661 5.368523 TCACCCCTCACTAAACATATAAGGG 59.631 44.000 0.00 0.00 41.41 3.95
1615 1662 4.104261 ACCCCTCACTAAACATATAAGGGC 59.896 45.833 0.00 0.00 40.59 5.19
1616 1663 4.315803 CCCTCACTAAACATATAAGGGCG 58.684 47.826 0.00 0.00 35.89 6.13
1617 1664 3.746492 CCTCACTAAACATATAAGGGCGC 59.254 47.826 0.00 0.00 0.00 6.53
1624 1870 4.367039 AACATATAAGGGCGCTATGGTT 57.633 40.909 7.64 4.52 0.00 3.67
1689 1936 0.250124 TCCGAACGCATGTCCACTTT 60.250 50.000 0.00 0.00 0.00 2.66
1695 1942 1.081242 GCATGTCCACTTTGCCACG 60.081 57.895 0.00 0.00 0.00 4.94
1713 1960 2.261361 CGGCGTGACATGACCTGA 59.739 61.111 0.00 0.00 0.00 3.86
1732 1999 5.414454 ACCTGATGCATGTATTTTTGTACGT 59.586 36.000 2.46 0.00 0.00 3.57
1740 2007 6.849305 GCATGTATTTTTGTACGTACATAGCC 59.151 38.462 27.82 14.39 36.05 3.93
1748 2015 3.882288 TGTACGTACATAGCCGGTATCAA 59.118 43.478 24.10 0.00 0.00 2.57
1750 2017 2.287188 ACGTACATAGCCGGTATCAACG 60.287 50.000 1.90 12.90 34.54 4.10
1752 2019 3.058983 CGTACATAGCCGGTATCAACGTA 60.059 47.826 1.90 0.00 0.00 3.57
1762 2029 1.016627 TATCAACGTAGTCGGACGGG 58.983 55.000 1.89 0.00 45.00 5.28
1763 2030 2.275547 ATCAACGTAGTCGGACGGGC 62.276 60.000 1.89 0.00 45.00 6.13
1764 2031 2.985282 AACGTAGTCGGACGGGCA 60.985 61.111 1.89 0.00 45.00 5.36
1792 2059 6.120220 ACTTCTTAAAATAAGACCATCCCGG 58.880 40.000 0.00 0.00 42.50 5.73
1808 2075 4.513198 TCCCGGCTTTTGTTATGAAAAG 57.487 40.909 0.00 0.00 43.16 2.27
1809 2076 3.892588 TCCCGGCTTTTGTTATGAAAAGT 59.107 39.130 0.00 0.00 42.55 2.66
1810 2077 4.342665 TCCCGGCTTTTGTTATGAAAAGTT 59.657 37.500 0.00 0.00 42.55 2.66
1823 2188 4.481930 TGAAAAGTTAGCCATCAACGTG 57.518 40.909 0.00 0.00 0.00 4.49
1832 2197 1.199097 GCCATCAACGTGTTTAGTGGG 59.801 52.381 0.00 0.00 0.00 4.61
1840 2205 1.345415 CGTGTTTAGTGGGGGTGTACT 59.655 52.381 0.00 0.00 0.00 2.73
1842 2207 2.369532 GTGTTTAGTGGGGGTGTACTGA 59.630 50.000 0.00 0.00 0.00 3.41
1843 2208 3.047115 TGTTTAGTGGGGGTGTACTGAA 58.953 45.455 0.00 0.00 0.00 3.02
1844 2209 3.458857 TGTTTAGTGGGGGTGTACTGAAA 59.541 43.478 0.00 0.00 0.00 2.69
1894 2259 4.305989 TCTCATCAAACAAAGTTGTGCC 57.694 40.909 0.00 0.00 41.31 5.01
1895 2260 3.698539 TCTCATCAAACAAAGTTGTGCCA 59.301 39.130 0.00 0.00 41.31 4.92
1901 2266 3.715628 AACAAAGTTGTGCCAGTCATC 57.284 42.857 0.00 0.00 41.31 2.92
1906 2271 6.237901 ACAAAGTTGTGCCAGTCATCTATTA 58.762 36.000 0.00 0.00 40.49 0.98
1909 2274 4.471386 AGTTGTGCCAGTCATCTATTACCT 59.529 41.667 0.00 0.00 0.00 3.08
1915 2280 5.130975 TGCCAGTCATCTATTACCTGTCAAT 59.869 40.000 0.00 0.00 0.00 2.57
1949 2318 8.410673 TGTGCTGGTCATTTATTTAAGGTTAA 57.589 30.769 0.00 0.00 0.00 2.01
1955 2324 7.148205 TGGTCATTTATTTAAGGTTAACGCTCC 60.148 37.037 0.00 0.00 0.00 4.70
2169 2539 1.026584 GTGTGTTTGGGGCGTTTACT 58.973 50.000 0.00 0.00 0.00 2.24
2328 2698 1.002033 GACAACAAGCAGCTCACAAGG 60.002 52.381 0.00 0.00 0.00 3.61
2689 3110 2.648059 AGATATGGCAGTGCAAGGAAC 58.352 47.619 18.61 3.52 0.00 3.62
2703 3124 2.637872 CAAGGAACCACTAGTCCCAGAA 59.362 50.000 0.00 0.00 0.00 3.02
2988 3421 4.218635 TCTGTCATCGGCTTATCTATCACC 59.781 45.833 0.00 0.00 0.00 4.02
3154 3648 6.435591 TCAGTCTATCAGAGAAGAAGCAAGAA 59.564 38.462 0.00 0.00 35.37 2.52
3526 4072 3.861840 CCTGATGAAGTAAAGAAGGCGA 58.138 45.455 0.00 0.00 0.00 5.54
3537 4083 2.430546 AGAAGGCGATTATCTGCTCG 57.569 50.000 8.39 0.00 37.92 5.03
3641 4187 2.170607 AGTGGGAAATACACCTGGATCG 59.829 50.000 0.00 0.00 39.63 3.69
3810 4371 1.055849 TGGTCTCTGCACCAAAGCTA 58.944 50.000 0.00 0.00 43.88 3.32
4039 4607 3.136443 TGATTTCTGGGCCGAGATAATGT 59.864 43.478 19.09 3.15 0.00 2.71
4173 4741 2.467880 GACCAGGAGTATCAAGGTGGA 58.532 52.381 0.00 0.00 42.72 4.02
4184 4757 2.313317 TCAAGGTGGAGTCGTGTAACT 58.687 47.619 0.00 0.00 31.75 2.24
4227 4810 5.067936 TCCTTTGCGTTGTTTCCAATTTCTA 59.932 36.000 0.00 0.00 32.11 2.10
4239 4822 8.134895 TGTTTCCAATTTCTATGAGTGTGTTTC 58.865 33.333 0.00 0.00 0.00 2.78
4315 6275 5.866633 TGAACTTTGTGATTGGTTGTTTGTC 59.133 36.000 0.00 0.00 0.00 3.18
4322 6282 0.653636 TTGGTTGTTTGTCGCGTCTC 59.346 50.000 5.77 0.00 0.00 3.36
4342 6302 7.748683 GCGTCTCATATGTCTATAAGTCTGAAG 59.251 40.741 1.90 0.00 0.00 3.02
4487 6482 4.019174 CAGGAAATGGTGATTTGTAGGCT 58.981 43.478 0.00 0.00 31.58 4.58
4517 6513 6.367695 CGAATACCACTACAGATTGTTTGTGA 59.632 38.462 13.02 0.73 36.46 3.58
4519 6515 7.672983 ATACCACTACAGATTGTTTGTGAAG 57.327 36.000 13.02 4.47 36.46 3.02
4583 6581 1.280133 AGCTAGTGCAGATGGAGCAAA 59.720 47.619 7.67 0.00 44.64 3.68
4599 6597 1.003839 AAAGGAGTTGCGGCATCGA 60.004 52.632 2.28 0.00 39.00 3.59
4606 6604 0.657312 GTTGCGGCATCGATGAATCA 59.343 50.000 29.20 17.72 39.00 2.57
4610 6608 1.572085 CGGCATCGATGAATCAGGCC 61.572 60.000 29.20 18.75 39.00 5.19
4615 6613 2.260844 TCGATGAATCAGGCCATTCC 57.739 50.000 5.01 0.00 32.51 3.01
4675 6673 5.712152 ATCCTTCTTTTGTTGTAGGCAAG 57.288 39.130 0.00 0.00 34.94 4.01
4680 6678 3.502211 TCTTTTGTTGTAGGCAAGCTAGC 59.498 43.478 6.62 6.62 34.94 3.42
4686 6684 0.391661 GTAGGCAAGCTAGCTGTGCA 60.392 55.000 33.13 21.29 40.12 4.57
4702 6700 4.803426 CAGCGGCGGAGACTGGTC 62.803 72.222 9.78 0.00 0.00 4.02
4740 6738 2.106683 GCGGGATGGAGGTTTGTCG 61.107 63.158 0.00 0.00 0.00 4.35
4743 6741 0.744771 GGGATGGAGGTTTGTCGAGC 60.745 60.000 0.00 0.00 0.00 5.03
4750 6748 0.108615 AGGTTTGTCGAGCAGATCCG 60.109 55.000 0.00 0.00 0.00 4.18
4754 6752 1.945354 TTGTCGAGCAGATCCGGGTC 61.945 60.000 6.61 6.61 0.00 4.46
4777 6775 2.119801 ACCATGCTCTTGGCTAGTTG 57.880 50.000 2.13 0.00 40.68 3.16
4815 6813 2.376956 GACGCTCTGATATGTGTCGTC 58.623 52.381 0.00 0.00 38.10 4.20
4819 6817 2.031870 CTCTGATATGTGTCGTCCCCA 58.968 52.381 0.00 0.00 0.00 4.96
4823 6821 3.804036 TGATATGTGTCGTCCCCATTTC 58.196 45.455 0.00 0.00 0.00 2.17
4824 6822 3.198853 TGATATGTGTCGTCCCCATTTCA 59.801 43.478 0.00 0.00 0.00 2.69
4826 6824 1.890876 TGTGTCGTCCCCATTTCAAG 58.109 50.000 0.00 0.00 0.00 3.02
4833 6831 0.395586 TCCCCATTTCAAGGGCATCG 60.396 55.000 0.00 0.00 45.39 3.84
4847 6845 4.577246 ATCGCCGCGGAGAAGCTC 62.577 66.667 34.86 11.30 34.40 4.09
4849 6847 3.889044 CGCCGCGGAGAAGCTCTA 61.889 66.667 33.48 0.00 34.40 2.43
4853 6851 0.802607 CCGCGGAGAAGCTCTAACAC 60.803 60.000 24.07 0.00 34.40 3.32
4858 6856 2.159310 CGGAGAAGCTCTAACACCTCTG 60.159 54.545 0.00 0.00 0.00 3.35
4861 6859 3.501349 AGAAGCTCTAACACCTCTGTCA 58.499 45.455 0.00 0.00 0.00 3.58
4862 6860 3.898123 AGAAGCTCTAACACCTCTGTCAA 59.102 43.478 0.00 0.00 0.00 3.18
4865 6863 4.408276 AGCTCTAACACCTCTGTCAACTA 58.592 43.478 0.00 0.00 0.00 2.24
4870 6868 3.246416 ACACCTCTGTCAACTACCTCT 57.754 47.619 0.00 0.00 0.00 3.69
4871 6869 2.894126 ACACCTCTGTCAACTACCTCTG 59.106 50.000 0.00 0.00 0.00 3.35
4872 6870 2.232452 CACCTCTGTCAACTACCTCTGG 59.768 54.545 0.00 0.00 0.00 3.86
4873 6871 2.110188 ACCTCTGTCAACTACCTCTGGA 59.890 50.000 0.00 0.00 0.00 3.86
4886 6884 4.081695 ACCTCTGGAGAAACCCTAGATT 57.918 45.455 0.00 0.00 38.00 2.40
4888 6886 5.212745 ACCTCTGGAGAAACCCTAGATTAG 58.787 45.833 0.00 0.00 38.00 1.73
4890 6888 5.303333 CCTCTGGAGAAACCCTAGATTAGTC 59.697 48.000 0.00 0.00 38.00 2.59
4895 6893 5.535406 GGAGAAACCCTAGATTAGTCGATCA 59.465 44.000 0.00 0.00 0.00 2.92
4899 6897 8.164733 AGAAACCCTAGATTAGTCGATCAGATA 58.835 37.037 0.00 0.00 0.00 1.98
4902 6900 7.463431 ACCCTAGATTAGTCGATCAGATAACT 58.537 38.462 0.00 3.91 0.00 2.24
4904 6902 7.247728 CCTAGATTAGTCGATCAGATAACTGC 58.752 42.308 7.81 0.00 43.17 4.40
4907 6905 1.132588 GTCGATCAGATAACTGCGGC 58.867 55.000 0.00 0.00 43.17 6.53
4930 6928 1.228306 TTGTGCCGTTACCCCCTTG 60.228 57.895 0.00 0.00 0.00 3.61
4952 6950 0.036388 GGCGTCATTCTTGGAGGTGA 60.036 55.000 0.00 0.00 0.00 4.02
4970 6968 3.608432 GCATTGGCTTGAGGGACC 58.392 61.111 0.00 0.00 36.96 4.46
4972 6970 1.318158 GCATTGGCTTGAGGGACCAG 61.318 60.000 0.00 0.00 34.28 4.00
4973 6971 0.329261 CATTGGCTTGAGGGACCAGA 59.671 55.000 0.00 0.00 34.28 3.86
4975 6973 0.473694 TTGGCTTGAGGGACCAGAGA 60.474 55.000 0.00 0.00 34.28 3.10
4984 6982 0.395312 GGGACCAGAGAACGGTTTCA 59.605 55.000 0.00 0.00 36.69 2.69
4987 6985 0.600255 ACCAGAGAACGGTTTCAGCG 60.600 55.000 0.00 0.00 45.69 5.18
4995 6993 3.423154 GGTTTCAGCGGTGGAGCG 61.423 66.667 15.67 0.00 43.00 5.03
5006 7004 2.031919 TGGAGCGGCGTTTCATGT 59.968 55.556 9.37 0.00 0.00 3.21
5017 7015 1.324435 CGTTTCATGTGACGCATCGAT 59.676 47.619 0.00 0.00 35.19 3.59
5018 7016 2.697363 GTTTCATGTGACGCATCGATG 58.303 47.619 21.27 21.27 35.19 3.84
5019 7017 2.292103 TTCATGTGACGCATCGATGA 57.708 45.000 29.20 7.15 35.19 2.92
5020 7018 1.559831 TCATGTGACGCATCGATGAC 58.440 50.000 29.20 17.54 35.19 3.06
5021 7019 0.227986 CATGTGACGCATCGATGACG 59.772 55.000 29.20 28.68 35.19 4.35
5022 7020 0.179137 ATGTGACGCATCGATGACGT 60.179 50.000 32.64 32.64 40.95 4.34
5023 7021 0.796870 TGTGACGCATCGATGACGTC 60.797 55.000 38.65 38.65 46.84 4.34
5024 7022 4.377471 GACGCATCGATGACGTCA 57.623 55.556 39.33 22.48 46.40 4.35
5025 7023 1.910880 GACGCATCGATGACGTCAC 59.089 57.895 39.33 27.62 46.40 3.67
5026 7024 0.523546 GACGCATCGATGACGTCACT 60.524 55.000 39.33 24.45 46.40 3.41
5027 7025 0.730840 ACGCATCGATGACGTCACTA 59.269 50.000 29.32 9.66 36.39 2.74
5028 7026 1.268083 ACGCATCGATGACGTCACTAG 60.268 52.381 29.32 14.91 36.39 2.57
5029 7027 1.268083 CGCATCGATGACGTCACTAGT 60.268 52.381 29.20 4.38 40.69 2.57
5030 7028 2.033151 CGCATCGATGACGTCACTAGTA 60.033 50.000 29.20 5.37 40.69 1.82
5031 7029 3.546617 GCATCGATGACGTCACTAGTAG 58.453 50.000 29.20 10.62 40.69 2.57
5032 7030 3.247886 GCATCGATGACGTCACTAGTAGA 59.752 47.826 29.20 11.22 40.69 2.59
5033 7031 4.260661 GCATCGATGACGTCACTAGTAGAA 60.261 45.833 29.20 1.08 40.69 2.10
5034 7032 5.729732 GCATCGATGACGTCACTAGTAGAAA 60.730 44.000 29.20 0.00 40.69 2.52
5035 7033 5.868043 TCGATGACGTCACTAGTAGAAAA 57.132 39.130 22.71 0.00 40.69 2.29
5036 7034 5.625251 TCGATGACGTCACTAGTAGAAAAC 58.375 41.667 22.71 0.00 40.69 2.43
5037 7035 5.179929 TCGATGACGTCACTAGTAGAAAACA 59.820 40.000 22.71 0.00 40.69 2.83
5038 7036 5.508573 CGATGACGTCACTAGTAGAAAACAG 59.491 44.000 22.71 0.00 34.56 3.16
5039 7037 5.117355 TGACGTCACTAGTAGAAAACAGG 57.883 43.478 15.76 0.00 0.00 4.00
5040 7038 4.022589 TGACGTCACTAGTAGAAAACAGGG 60.023 45.833 15.76 0.00 0.00 4.45
5041 7039 3.251571 CGTCACTAGTAGAAAACAGGGC 58.748 50.000 3.59 0.00 0.00 5.19
5042 7040 3.056749 CGTCACTAGTAGAAAACAGGGCT 60.057 47.826 3.59 0.00 0.00 5.19
5043 7041 4.560919 CGTCACTAGTAGAAAACAGGGCTT 60.561 45.833 3.59 0.00 0.00 4.35
5044 7042 4.691216 GTCACTAGTAGAAAACAGGGCTTG 59.309 45.833 3.59 0.00 0.00 4.01
5045 7043 4.003648 CACTAGTAGAAAACAGGGCTTGG 58.996 47.826 3.59 0.00 0.00 3.61
5046 7044 2.586648 AGTAGAAAACAGGGCTTGGG 57.413 50.000 0.44 0.00 0.00 4.12
5047 7045 1.780919 AGTAGAAAACAGGGCTTGGGT 59.219 47.619 0.44 0.00 0.00 4.51
5048 7046 2.160205 GTAGAAAACAGGGCTTGGGTC 58.840 52.381 0.44 0.00 0.00 4.46
5049 7047 0.178961 AGAAAACAGGGCTTGGGTCC 60.179 55.000 0.44 0.00 37.52 4.46
5050 7048 0.469144 GAAAACAGGGCTTGGGTCCA 60.469 55.000 0.44 0.00 40.27 4.02
5051 7049 0.031616 AAAACAGGGCTTGGGTCCAA 60.032 50.000 0.44 2.18 40.27 3.53
5058 7056 2.036256 CTTGGGTCCAAGCAGGGG 59.964 66.667 15.77 0.00 45.38 4.79
5059 7057 2.451493 TTGGGTCCAAGCAGGGGA 60.451 61.111 0.00 0.00 38.24 4.81
5060 7058 2.080336 CTTGGGTCCAAGCAGGGGAA 62.080 60.000 15.77 0.00 45.38 3.97
5061 7059 2.080336 TTGGGTCCAAGCAGGGGAAG 62.080 60.000 0.00 0.00 35.88 3.46
5062 7060 2.361737 GGTCCAAGCAGGGGAAGC 60.362 66.667 0.00 0.00 35.88 3.86
5063 7061 2.361737 GTCCAAGCAGGGGAAGCC 60.362 66.667 0.00 0.00 35.88 4.35
5064 7062 3.661648 TCCAAGCAGGGGAAGCCC 61.662 66.667 0.00 0.00 44.51 5.19
5074 7072 3.036431 GGGAAGCCCATTAATCCCG 57.964 57.895 0.00 0.00 44.65 5.14
5075 7073 0.539669 GGGAAGCCCATTAATCCCGG 60.540 60.000 0.00 0.00 44.65 5.73
5076 7074 0.185175 GGAAGCCCATTAATCCCGGT 59.815 55.000 0.00 0.00 0.00 5.28
5077 7075 1.411074 GGAAGCCCATTAATCCCGGTT 60.411 52.381 0.00 0.00 0.00 4.44
5078 7076 1.954382 GAAGCCCATTAATCCCGGTTC 59.046 52.381 0.00 0.00 0.00 3.62
5079 7077 0.923358 AGCCCATTAATCCCGGTTCA 59.077 50.000 0.00 0.00 0.00 3.18
5080 7078 1.029681 GCCCATTAATCCCGGTTCAC 58.970 55.000 0.00 0.00 0.00 3.18
5081 7079 1.409661 GCCCATTAATCCCGGTTCACT 60.410 52.381 0.00 0.00 0.00 3.41
5082 7080 2.572290 CCCATTAATCCCGGTTCACTC 58.428 52.381 0.00 0.00 0.00 3.51
5083 7081 2.092646 CCCATTAATCCCGGTTCACTCA 60.093 50.000 0.00 0.00 0.00 3.41
5084 7082 2.943033 CCATTAATCCCGGTTCACTCAC 59.057 50.000 0.00 0.00 0.00 3.51
5085 7083 2.373540 TTAATCCCGGTTCACTCACG 57.626 50.000 0.00 0.00 0.00 4.35
5086 7084 1.548081 TAATCCCGGTTCACTCACGA 58.452 50.000 0.00 0.00 0.00 4.35
5087 7085 0.682852 AATCCCGGTTCACTCACGAA 59.317 50.000 0.00 0.00 0.00 3.85
5088 7086 0.037605 ATCCCGGTTCACTCACGAAC 60.038 55.000 0.00 0.00 43.75 3.95
5092 7090 3.946907 GTTCACTCACGAACCGGG 58.053 61.111 6.32 0.00 39.52 5.73
5093 7091 1.364901 GTTCACTCACGAACCGGGA 59.635 57.895 6.32 0.00 39.52 5.14
5094 7092 0.942884 GTTCACTCACGAACCGGGAC 60.943 60.000 6.32 0.00 39.52 4.46
5095 7093 2.048503 CACTCACGAACCGGGACC 60.049 66.667 6.32 0.00 32.99 4.46
5096 7094 3.308705 ACTCACGAACCGGGACCC 61.309 66.667 6.32 0.00 32.99 4.46
5097 7095 3.307906 CTCACGAACCGGGACCCA 61.308 66.667 12.15 0.00 32.99 4.51
5098 7096 2.605295 TCACGAACCGGGACCCAT 60.605 61.111 12.15 0.00 32.99 4.00
5099 7097 2.435938 CACGAACCGGGACCCATG 60.436 66.667 12.15 3.12 28.17 3.66
5100 7098 3.712907 ACGAACCGGGACCCATGG 61.713 66.667 12.15 4.14 0.00 3.66
5107 7105 3.884774 GGGACCCATGGCGGCATA 61.885 66.667 25.33 0.00 0.00 3.14
5108 7106 2.281761 GGACCCATGGCGGCATAG 60.282 66.667 25.33 20.31 0.00 2.23
5109 7107 2.281761 GACCCATGGCGGCATAGG 60.282 66.667 30.02 30.02 0.00 2.57
5110 7108 3.096495 ACCCATGGCGGCATAGGT 61.096 61.111 31.32 31.32 0.00 3.08
5111 7109 2.281761 CCCATGGCGGCATAGGTC 60.282 66.667 25.06 0.00 0.00 3.85
5112 7110 2.281761 CCATGGCGGCATAGGTCC 60.282 66.667 25.33 0.00 0.00 4.46
5113 7111 2.281761 CATGGCGGCATAGGTCCC 60.282 66.667 25.33 0.00 0.00 4.46
5114 7112 3.941188 ATGGCGGCATAGGTCCCG 61.941 66.667 24.59 0.00 46.94 5.14
5117 7115 3.228759 GCGGCATAGGTCCCGGTA 61.229 66.667 0.00 0.00 44.49 4.02
5118 7116 3.048602 CGGCATAGGTCCCGGTAG 58.951 66.667 0.00 0.00 40.79 3.18
5119 7117 2.571216 CGGCATAGGTCCCGGTAGG 61.571 68.421 0.00 0.00 40.79 3.18
5120 7118 1.458967 GGCATAGGTCCCGGTAGGT 60.459 63.158 0.00 0.00 36.75 3.08
5121 7119 1.470165 GGCATAGGTCCCGGTAGGTC 61.470 65.000 0.00 0.00 36.75 3.85
5122 7120 0.757935 GCATAGGTCCCGGTAGGTCA 60.758 60.000 0.00 0.00 36.75 4.02
5123 7121 1.038280 CATAGGTCCCGGTAGGTCAC 58.962 60.000 0.00 0.00 36.75 3.67
5124 7122 0.466922 ATAGGTCCCGGTAGGTCACG 60.467 60.000 0.00 0.00 36.75 4.35
5129 7127 2.180017 CCGGTAGGTCACGGTTCG 59.820 66.667 0.00 0.00 44.85 3.95
5130 7128 2.629656 CCGGTAGGTCACGGTTCGT 61.630 63.158 0.00 0.00 44.85 3.85
5139 7137 4.003788 ACGGTTCGTGAGGCCAGG 62.004 66.667 5.01 0.00 39.18 4.45
5140 7138 4.760047 CGGTTCGTGAGGCCAGGG 62.760 72.222 5.01 0.00 0.00 4.45
5141 7139 4.410400 GGTTCGTGAGGCCAGGGG 62.410 72.222 5.01 0.00 0.00 4.79
5142 7140 4.410400 GTTCGTGAGGCCAGGGGG 62.410 72.222 5.01 0.00 37.18 5.40
5169 7167 4.857251 CCTCGTAGGGCATTGGTC 57.143 61.111 0.00 0.00 0.00 4.02
5170 7168 1.146263 CCTCGTAGGGCATTGGTCC 59.854 63.158 0.00 0.00 39.90 4.46
5171 7169 1.146263 CTCGTAGGGCATTGGTCCC 59.854 63.158 0.00 0.00 40.78 4.46
5176 7174 2.754254 GGGCATTGGTCCCGGTTC 60.754 66.667 0.00 0.00 33.43 3.62
5177 7175 3.131478 GGCATTGGTCCCGGTTCG 61.131 66.667 0.00 0.00 0.00 3.95
5178 7176 2.359478 GCATTGGTCCCGGTTCGT 60.359 61.111 0.00 0.00 0.00 3.85
5179 7177 2.396157 GCATTGGTCCCGGTTCGTC 61.396 63.158 0.00 0.00 0.00 4.20
5180 7178 1.295423 CATTGGTCCCGGTTCGTCT 59.705 57.895 0.00 0.00 0.00 4.18
5181 7179 1.019278 CATTGGTCCCGGTTCGTCTG 61.019 60.000 0.00 0.00 0.00 3.51
5182 7180 1.189524 ATTGGTCCCGGTTCGTCTGA 61.190 55.000 0.00 0.00 0.00 3.27
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 12 9.362539 GCACTGAATATTGACAAAAAGATCATT 57.637 29.630 0.00 0.00 0.00 2.57
12 13 7.977853 GGCACTGAATATTGACAAAAAGATCAT 59.022 33.333 0.00 0.00 0.00 2.45
13 14 7.039853 TGGCACTGAATATTGACAAAAAGATCA 60.040 33.333 0.00 0.00 0.00 2.92
14 15 7.315142 TGGCACTGAATATTGACAAAAAGATC 58.685 34.615 0.00 0.00 0.00 2.75
17 18 7.712264 TTTGGCACTGAATATTGACAAAAAG 57.288 32.000 4.05 0.00 45.66 2.27
29 30 4.216257 GTGTGATGTAGTTTGGCACTGAAT 59.784 41.667 0.00 0.00 35.97 2.57
123 124 9.167311 GACCAAGTGTCATGAATTTTAGAGTAT 57.833 33.333 0.00 0.00 43.85 2.12
154 155 5.735766 AGAAAGTAGACCACATTAGAAGCC 58.264 41.667 0.00 0.00 0.00 4.35
155 156 8.198109 TCATAGAAAGTAGACCACATTAGAAGC 58.802 37.037 0.00 0.00 0.00 3.86
270 271 3.466836 CCCGTACATGTCATAGCACATT 58.533 45.455 0.00 0.00 34.60 2.71
297 298 7.915397 CCTAACACAATAATCATAGCCAAACAC 59.085 37.037 0.00 0.00 0.00 3.32
310 312 6.053005 CGTCATACACCCCTAACACAATAAT 58.947 40.000 0.00 0.00 0.00 1.28
341 345 0.518636 CCGTGTGTTGCAATGAGAGG 59.481 55.000 0.59 0.29 0.00 3.69
345 349 1.177895 ATGCCCGTGTGTTGCAATGA 61.178 50.000 0.59 0.00 38.69 2.57
365 369 9.654663 ACTTTCGTTTATCTTCTACTAGCAAAT 57.345 29.630 0.00 0.00 0.00 2.32
375 379 5.562890 GCCTTTGCACTTTCGTTTATCTTCT 60.563 40.000 0.00 0.00 37.47 2.85
376 380 4.617223 GCCTTTGCACTTTCGTTTATCTTC 59.383 41.667 0.00 0.00 37.47 2.87
385 389 2.119457 GTTGAAGCCTTTGCACTTTCG 58.881 47.619 0.00 0.00 41.13 3.46
389 393 1.322442 GAGGTTGAAGCCTTTGCACT 58.678 50.000 0.00 0.00 39.34 4.40
391 395 1.795170 GCGAGGTTGAAGCCTTTGCA 61.795 55.000 6.53 0.00 39.34 4.08
405 409 5.575606 TGAGTTCTTTACGAATAAAGCGAGG 59.424 40.000 0.00 0.00 44.80 4.63
428 432 9.773328 CACCACAATTATCTTGTGTAGTATTTG 57.227 33.333 14.85 2.57 46.05 2.32
432 436 7.672240 TGACACCACAATTATCTTGTGTAGTA 58.328 34.615 14.85 0.00 46.05 1.82
478 482 4.787260 AAGAGGAAGTACTTTCTCCGTC 57.213 45.455 31.93 19.08 44.47 4.79
479 483 5.323581 ACTAAGAGGAAGTACTTTCTCCGT 58.676 41.667 31.93 24.60 44.47 4.69
567 572 8.827832 AACCAGATCATTCATCCTCATAAAAA 57.172 30.769 0.00 0.00 30.71 1.94
571 576 6.903516 ACAAACCAGATCATTCATCCTCATA 58.096 36.000 0.00 0.00 30.71 2.15
576 581 4.883585 TGCTACAAACCAGATCATTCATCC 59.116 41.667 0.00 0.00 30.71 3.51
581 586 4.400251 CCACATGCTACAAACCAGATCATT 59.600 41.667 0.00 0.00 0.00 2.57
591 596 3.382865 TCTGCAAAACCACATGCTACAAA 59.617 39.130 0.00 0.00 42.97 2.83
635 640 7.199541 ACTTTATATGTGCTGATGAAGATGC 57.800 36.000 0.00 0.00 0.00 3.91
679 684 6.479331 CGCAAGCAAGCATATATAGATGAGAT 59.521 38.462 11.53 0.00 0.00 2.75
680 685 5.809051 CGCAAGCAAGCATATATAGATGAGA 59.191 40.000 11.53 0.00 0.00 3.27
681 686 6.033895 CGCAAGCAAGCATATATAGATGAG 57.966 41.667 11.53 1.69 0.00 2.90
756 761 2.409975 CCCGCTCGTCTGTAAAAGAAA 58.590 47.619 0.00 0.00 36.40 2.52
759 764 0.739813 CCCCCGCTCGTCTGTAAAAG 60.740 60.000 0.00 0.00 0.00 2.27
762 767 2.036098 TCCCCCGCTCGTCTGTAA 59.964 61.111 0.00 0.00 0.00 2.41
764 769 4.361971 TCTCCCCCGCTCGTCTGT 62.362 66.667 0.00 0.00 0.00 3.41
765 770 3.522731 CTCTCCCCCGCTCGTCTG 61.523 72.222 0.00 0.00 0.00 3.51
766 771 3.707640 CTCTCTCCCCCGCTCGTCT 62.708 68.421 0.00 0.00 0.00 4.18
767 772 3.213402 CTCTCTCCCCCGCTCGTC 61.213 72.222 0.00 0.00 0.00 4.20
768 773 3.707640 CTCTCTCTCCCCCGCTCGT 62.708 68.421 0.00 0.00 0.00 4.18
769 774 2.904866 CTCTCTCTCCCCCGCTCG 60.905 72.222 0.00 0.00 0.00 5.03
772 777 1.528309 CTCTCTCTCTCTCCCCCGC 60.528 68.421 0.00 0.00 0.00 6.13
773 778 0.771127 ATCTCTCTCTCTCTCCCCCG 59.229 60.000 0.00 0.00 0.00 5.73
774 779 2.041216 GGTATCTCTCTCTCTCTCCCCC 59.959 59.091 0.00 0.00 0.00 5.40
775 780 2.290071 CGGTATCTCTCTCTCTCTCCCC 60.290 59.091 0.00 0.00 0.00 4.81
776 781 2.370849 ACGGTATCTCTCTCTCTCTCCC 59.629 54.545 0.00 0.00 0.00 4.30
777 782 3.764237 ACGGTATCTCTCTCTCTCTCC 57.236 52.381 0.00 0.00 0.00 3.71
778 783 4.232221 CGTACGGTATCTCTCTCTCTCTC 58.768 52.174 7.57 0.00 0.00 3.20
779 784 3.638160 ACGTACGGTATCTCTCTCTCTCT 59.362 47.826 21.06 0.00 0.00 3.10
780 785 3.981211 ACGTACGGTATCTCTCTCTCTC 58.019 50.000 21.06 0.00 0.00 3.20
781 786 5.528043 TTACGTACGGTATCTCTCTCTCT 57.472 43.478 21.06 0.00 0.00 3.10
792 797 8.907685 GTGTTTACTTGTTAATTACGTACGGTA 58.092 33.333 21.06 7.15 0.00 4.02
796 801 8.155923 CCTCGTGTTTACTTGTTAATTACGTAC 58.844 37.037 0.00 0.00 33.97 3.67
800 805 8.219105 CAGTCCTCGTGTTTACTTGTTAATTAC 58.781 37.037 0.00 0.00 0.00 1.89
821 826 2.489971 AGACTCGATCGAGATCAGTCC 58.510 52.381 42.97 23.62 44.53 3.85
822 827 3.311322 ACAAGACTCGATCGAGATCAGTC 59.689 47.826 42.97 31.20 44.53 3.51
838 843 5.793457 GCATGTTTTATACCAACGACAAGAC 59.207 40.000 0.00 0.00 0.00 3.01
902 907 6.014242 GGCGGAGATGATGATATATATTGGGA 60.014 42.308 0.00 0.00 0.00 4.37
903 908 6.013898 AGGCGGAGATGATGATATATATTGGG 60.014 42.308 0.00 0.00 0.00 4.12
905 910 7.894708 AGAGGCGGAGATGATGATATATATTG 58.105 38.462 0.00 0.00 0.00 1.90
907 912 7.335673 CGTAGAGGCGGAGATGATGATATATAT 59.664 40.741 0.00 0.00 0.00 0.86
941 958 0.392193 AGACTTCATTCCAGCCGCAG 60.392 55.000 0.00 0.00 0.00 5.18
950 967 1.666189 GTTAGGCGGCAGACTTCATTC 59.334 52.381 13.08 0.00 36.79 2.67
998 1015 3.610911 ACCATTTCTTCTCGACCCATTC 58.389 45.455 0.00 0.00 0.00 2.67
1035 1052 8.175716 GTGCAGTATGTAGAATGTTTAACCTTC 58.824 37.037 5.22 5.22 39.31 3.46
1037 1054 6.598064 GGTGCAGTATGTAGAATGTTTAACCT 59.402 38.462 0.00 0.00 39.31 3.50
1038 1055 6.598064 AGGTGCAGTATGTAGAATGTTTAACC 59.402 38.462 0.00 0.00 39.31 2.85
1039 1056 7.611213 AGGTGCAGTATGTAGAATGTTTAAC 57.389 36.000 0.00 0.00 39.31 2.01
1040 1057 7.880713 TCAAGGTGCAGTATGTAGAATGTTTAA 59.119 33.333 0.00 0.00 39.31 1.52
1042 1059 6.237901 TCAAGGTGCAGTATGTAGAATGTTT 58.762 36.000 0.00 0.00 39.31 2.83
1045 1062 6.286758 AGATCAAGGTGCAGTATGTAGAATG 58.713 40.000 0.00 0.00 39.31 2.67
1046 1063 6.491714 AGATCAAGGTGCAGTATGTAGAAT 57.508 37.500 0.00 0.00 39.31 2.40
1047 1064 5.939764 AGATCAAGGTGCAGTATGTAGAA 57.060 39.130 0.00 0.00 39.31 2.10
1056 1080 2.097142 GCTGCTTTAGATCAAGGTGCAG 59.903 50.000 17.39 17.39 46.11 4.41
1111 1136 8.342470 GCATTTGGCTTGGTTGGAACAAAAAT 62.342 38.462 0.00 0.00 41.87 1.82
1112 1137 7.114204 GCATTTGGCTTGGTTGGAACAAAAA 62.114 40.000 0.00 0.00 41.87 1.94
1113 1138 5.695041 GCATTTGGCTTGGTTGGAACAAAA 61.695 41.667 0.00 0.00 41.87 2.44
1114 1139 4.240069 GCATTTGGCTTGGTTGGAACAAA 61.240 43.478 0.00 0.00 41.87 2.83
1134 1159 3.407424 AGCAAGACTTATGACACTGCA 57.593 42.857 0.00 0.00 0.00 4.41
1143 1168 8.376270 ACAAACCTAAACTCTAGCAAGACTTAT 58.624 33.333 0.00 0.00 0.00 1.73
1148 1173 4.755123 GCACAAACCTAAACTCTAGCAAGA 59.245 41.667 0.00 0.00 0.00 3.02
1149 1174 4.377431 CGCACAAACCTAAACTCTAGCAAG 60.377 45.833 0.00 0.00 0.00 4.01
1150 1175 3.496884 CGCACAAACCTAAACTCTAGCAA 59.503 43.478 0.00 0.00 0.00 3.91
1159 1184 3.440872 AGAAACACACGCACAAACCTAAA 59.559 39.130 0.00 0.00 0.00 1.85
1161 1186 2.353269 CAGAAACACACGCACAAACCTA 59.647 45.455 0.00 0.00 0.00 3.08
1162 1187 1.132262 CAGAAACACACGCACAAACCT 59.868 47.619 0.00 0.00 0.00 3.50
1165 1190 2.999507 AACAGAAACACACGCACAAA 57.000 40.000 0.00 0.00 0.00 2.83
1188 1213 0.451783 GCAAAGTTAGGATGCCCACG 59.548 55.000 0.00 0.00 34.03 4.94
1204 1229 0.388520 CACGTGTCCGATCTCTGCAA 60.389 55.000 7.58 0.00 37.88 4.08
1211 1236 2.203800 TAATGAGCACGTGTCCGATC 57.796 50.000 18.38 8.42 37.88 3.69
1213 1238 1.474879 TCATAATGAGCACGTGTCCGA 59.525 47.619 18.38 0.00 37.88 4.55
1220 1245 6.791887 AGGATACAAATCATAATGAGCACG 57.208 37.500 0.00 0.00 41.41 5.34
1230 1255 6.652481 CGGAGCATCTTAAGGATACAAATCAT 59.348 38.462 1.85 0.00 34.38 2.45
1237 1262 5.815740 TCAAAACGGAGCATCTTAAGGATAC 59.184 40.000 1.85 0.00 32.64 2.24
1245 1270 6.757897 TTATTGATCAAAACGGAGCATCTT 57.242 33.333 13.09 0.00 32.58 2.40
1246 1271 6.757897 TTTATTGATCAAAACGGAGCATCT 57.242 33.333 13.09 0.00 32.58 2.90
1291 1317 2.608016 CGAGTGCACAGCTCAACTCTTA 60.608 50.000 21.04 0.00 33.45 2.10
1297 1323 0.104855 AGTTCGAGTGCACAGCTCAA 59.895 50.000 21.04 1.03 33.45 3.02
1304 1330 5.786401 ATTTCTAATGAGTTCGAGTGCAC 57.214 39.130 9.40 9.40 0.00 4.57
1374 1400 6.567769 TCGCAAAACAAAGAAACTGATTTC 57.432 33.333 0.00 0.00 44.02 2.17
1375 1401 6.509997 GCATCGCAAAACAAAGAAACTGATTT 60.510 34.615 0.00 0.00 0.00 2.17
1376 1402 5.050837 GCATCGCAAAACAAAGAAACTGATT 60.051 36.000 0.00 0.00 0.00 2.57
1377 1403 4.445385 GCATCGCAAAACAAAGAAACTGAT 59.555 37.500 0.00 0.00 0.00 2.90
1378 1404 3.796178 GCATCGCAAAACAAAGAAACTGA 59.204 39.130 0.00 0.00 0.00 3.41
1379 1405 3.060339 GGCATCGCAAAACAAAGAAACTG 60.060 43.478 0.00 0.00 0.00 3.16
1380 1406 3.123050 GGCATCGCAAAACAAAGAAACT 58.877 40.909 0.00 0.00 0.00 2.66
1381 1407 2.097444 CGGCATCGCAAAACAAAGAAAC 60.097 45.455 0.00 0.00 0.00 2.78
1383 1409 1.066303 ACGGCATCGCAAAACAAAGAA 59.934 42.857 0.00 0.00 40.63 2.52
1384 1410 0.665835 ACGGCATCGCAAAACAAAGA 59.334 45.000 0.00 0.00 40.63 2.52
1385 1411 2.095969 TCTACGGCATCGCAAAACAAAG 60.096 45.455 0.00 0.00 40.63 2.77
1386 1412 1.874231 TCTACGGCATCGCAAAACAAA 59.126 42.857 0.00 0.00 40.63 2.83
1400 1447 6.496338 TCAGTGTATATACATGCTCTACGG 57.504 41.667 18.27 5.26 38.63 4.02
1417 1464 7.839907 ACAAATGGTTAATGCAATATCAGTGT 58.160 30.769 0.00 0.00 0.00 3.55
1449 1496 9.007901 GTAGAGCTAAGACGGGACTAATAATTA 57.992 37.037 0.00 0.00 0.00 1.40
1465 1512 7.973388 GCCAGAATATCAGTATGTAGAGCTAAG 59.027 40.741 0.00 0.00 37.40 2.18
1466 1513 7.671819 AGCCAGAATATCAGTATGTAGAGCTAA 59.328 37.037 0.00 0.00 37.40 3.09
1467 1514 7.178573 AGCCAGAATATCAGTATGTAGAGCTA 58.821 38.462 0.00 0.00 37.40 3.32
1468 1515 6.015918 AGCCAGAATATCAGTATGTAGAGCT 58.984 40.000 0.00 0.00 37.40 4.09
1469 1516 6.279513 AGCCAGAATATCAGTATGTAGAGC 57.720 41.667 0.00 0.00 37.40 4.09
1471 1518 8.972127 GGAATAGCCAGAATATCAGTATGTAGA 58.028 37.037 0.00 0.00 34.92 2.59
1472 1519 8.753133 TGGAATAGCCAGAATATCAGTATGTAG 58.247 37.037 0.00 0.00 43.33 2.74
1489 1536 7.602753 ACTTTTATTTGTGAACTGGAATAGCC 58.397 34.615 0.00 0.00 37.10 3.93
1590 1637 5.368523 CCCTTATATGTTTAGTGAGGGGTGA 59.631 44.000 0.00 0.00 38.92 4.02
1591 1638 5.621193 CCCTTATATGTTTAGTGAGGGGTG 58.379 45.833 0.00 0.00 38.92 4.61
1592 1639 4.104261 GCCCTTATATGTTTAGTGAGGGGT 59.896 45.833 7.57 0.00 42.09 4.95
1593 1640 4.652822 GCCCTTATATGTTTAGTGAGGGG 58.347 47.826 7.57 0.00 42.09 4.79
1594 1641 4.315803 CGCCCTTATATGTTTAGTGAGGG 58.684 47.826 0.00 0.00 44.14 4.30
1595 1642 3.746492 GCGCCCTTATATGTTTAGTGAGG 59.254 47.826 0.00 0.00 0.00 3.86
1596 1643 4.632153 AGCGCCCTTATATGTTTAGTGAG 58.368 43.478 2.29 0.00 0.00 3.51
1597 1644 4.682778 AGCGCCCTTATATGTTTAGTGA 57.317 40.909 2.29 0.00 0.00 3.41
1598 1645 5.351465 CCATAGCGCCCTTATATGTTTAGTG 59.649 44.000 2.29 0.00 0.00 2.74
1599 1646 5.012768 ACCATAGCGCCCTTATATGTTTAGT 59.987 40.000 2.29 0.00 0.00 2.24
1600 1647 5.488341 ACCATAGCGCCCTTATATGTTTAG 58.512 41.667 2.29 0.00 0.00 1.85
1601 1648 5.492855 ACCATAGCGCCCTTATATGTTTA 57.507 39.130 2.29 0.00 0.00 2.01
1602 1649 4.367039 ACCATAGCGCCCTTATATGTTT 57.633 40.909 2.29 0.00 0.00 2.83
1603 1650 4.367039 AACCATAGCGCCCTTATATGTT 57.633 40.909 2.29 0.43 0.00 2.71
1604 1651 4.367039 AAACCATAGCGCCCTTATATGT 57.633 40.909 2.29 0.00 0.00 2.29
1605 1652 5.705609 AAAAACCATAGCGCCCTTATATG 57.294 39.130 2.29 5.10 0.00 1.78
1624 1870 7.868415 GGTGTGTATATACTGTTTTGGCAAAAA 59.132 33.333 25.60 11.74 32.82 1.94
1643 1889 6.602406 GTCTCCAAGAAGACTATAGGTGTGTA 59.398 42.308 4.43 0.00 42.01 2.90
1644 1890 5.419471 GTCTCCAAGAAGACTATAGGTGTGT 59.581 44.000 4.43 0.00 42.01 3.72
1645 1891 5.449314 CGTCTCCAAGAAGACTATAGGTGTG 60.449 48.000 4.43 0.00 42.90 3.82
1646 1892 4.641094 CGTCTCCAAGAAGACTATAGGTGT 59.359 45.833 4.43 0.00 42.90 4.16
1660 1906 4.148230 CGTTCGGACGTCTCCAAG 57.852 61.111 16.46 1.05 44.08 3.61
1679 1926 2.616330 CGCGTGGCAAAGTGGACAT 61.616 57.895 0.00 0.00 0.00 3.06
1695 1942 3.490759 CAGGTCATGTCACGCCGC 61.491 66.667 0.00 0.00 0.00 6.53
1699 1946 1.329599 CATGCATCAGGTCATGTCACG 59.670 52.381 0.00 0.00 36.30 4.35
1707 1954 5.965334 CGTACAAAAATACATGCATCAGGTC 59.035 40.000 0.00 0.00 29.18 3.85
1713 1960 8.067784 GCTATGTACGTACAAAAATACATGCAT 58.932 33.333 30.46 12.81 38.42 3.96
1732 1999 4.136796 ACTACGTTGATACCGGCTATGTA 58.863 43.478 0.00 0.00 0.00 2.29
1740 2007 1.593070 CGTCCGACTACGTTGATACCG 60.593 57.143 3.44 2.02 38.07 4.02
1748 2015 2.985282 TTGCCCGTCCGACTACGT 60.985 61.111 0.00 0.00 41.27 3.57
1750 2017 2.505557 CGTTGCCCGTCCGACTAC 60.506 66.667 0.00 0.00 0.00 2.73
1752 2019 4.353437 GTCGTTGCCCGTCCGACT 62.353 66.667 4.34 0.00 45.49 4.18
1762 2029 6.894828 TGGTCTTATTTTAAGAAGTCGTTGC 58.105 36.000 0.00 0.00 0.00 4.17
1763 2030 8.175716 GGATGGTCTTATTTTAAGAAGTCGTTG 58.824 37.037 0.00 0.00 0.00 4.10
1764 2031 7.336176 GGGATGGTCTTATTTTAAGAAGTCGTT 59.664 37.037 0.00 0.00 0.00 3.85
1772 2039 4.461198 AGCCGGGATGGTCTTATTTTAAG 58.539 43.478 2.18 0.00 41.21 1.85
1774 2041 4.513406 AAGCCGGGATGGTCTTATTTTA 57.487 40.909 2.18 0.00 41.21 1.52
1792 2059 7.598493 TGATGGCTAACTTTTCATAACAAAAGC 59.402 33.333 5.74 0.00 44.19 3.51
1808 2075 4.378046 CCACTAAACACGTTGATGGCTAAC 60.378 45.833 0.00 0.00 0.00 2.34
1809 2076 3.749088 CCACTAAACACGTTGATGGCTAA 59.251 43.478 0.00 0.00 0.00 3.09
1810 2077 3.331150 CCACTAAACACGTTGATGGCTA 58.669 45.455 0.00 0.00 0.00 3.93
1823 2188 3.775261 TTCAGTACACCCCCACTAAAC 57.225 47.619 0.00 0.00 0.00 2.01
1832 2197 6.635030 ATTCACTTCTTTTTCAGTACACCC 57.365 37.500 0.00 0.00 0.00 4.61
1871 2236 4.682860 GGCACAACTTTGTTTGATGAGATG 59.317 41.667 0.00 0.00 39.91 2.90
1877 2242 3.446873 TGACTGGCACAACTTTGTTTGAT 59.553 39.130 0.00 0.00 39.91 2.57
1920 2289 7.015195 ACCTTAAATAAATGACCAGCACAACTT 59.985 33.333 0.00 0.00 0.00 2.66
1939 2308 3.071312 TCACCAGGAGCGTTAACCTTAAA 59.929 43.478 0.00 0.00 33.91 1.52
1940 2309 2.633967 TCACCAGGAGCGTTAACCTTAA 59.366 45.455 0.00 0.00 33.91 1.85
1941 2310 2.250031 TCACCAGGAGCGTTAACCTTA 58.750 47.619 0.00 0.00 33.91 2.69
1942 2311 1.053424 TCACCAGGAGCGTTAACCTT 58.947 50.000 0.00 0.00 33.91 3.50
1949 2318 2.665000 CACCATCACCAGGAGCGT 59.335 61.111 0.00 0.00 0.00 5.07
1955 2324 2.044650 CCTGCCCACCATCACCAG 60.045 66.667 0.00 0.00 0.00 4.00
2046 2416 2.385803 ACGAGTACCTTGATCCGGATT 58.614 47.619 20.22 4.38 0.00 3.01
2154 2524 2.544277 GGACAAAGTAAACGCCCCAAAC 60.544 50.000 0.00 0.00 0.00 2.93
2169 2539 2.092429 AGTTGCCACTGAGAAGGACAAA 60.092 45.455 0.00 0.00 0.00 2.83
2328 2698 1.861982 TAACAGCCTGGTAGAGGGAC 58.138 55.000 0.00 0.00 43.07 4.46
2635 3029 4.277515 TGACTTCACCATCTTTCTGAGG 57.722 45.455 0.00 0.00 0.00 3.86
2648 3057 4.098044 TCTTCCCTATGTCGATGACTTCAC 59.902 45.833 0.00 0.00 33.15 3.18
2689 3110 4.094476 TCCTTTAGTTCTGGGACTAGTGG 58.906 47.826 0.00 0.00 33.91 4.00
3154 3648 0.590195 CTCGCTTTGTTTCTGCTGCT 59.410 50.000 0.00 0.00 0.00 4.24
3526 4072 5.462398 CCGTACTTTTAAGCGAGCAGATAAT 59.538 40.000 0.00 0.00 0.00 1.28
3537 4083 6.732531 AGTTTACCATCCGTACTTTTAAGC 57.267 37.500 0.00 0.00 0.00 3.09
3641 4187 2.155279 GTTTTCTCTGGGACCAGCTTC 58.845 52.381 13.51 0.00 43.31 3.86
3810 4371 1.922447 TCATAATGGTGCCCAGGAAGT 59.078 47.619 0.00 0.00 36.75 3.01
4039 4607 3.047718 CTGACGGCGCGAGGTAGAA 62.048 63.158 12.10 0.00 0.00 2.10
4184 4757 1.727880 GAAACTATGCACGCGGTGTTA 59.272 47.619 12.47 0.97 35.75 2.41
4227 4810 4.924305 AGCACAAATGAAACACACTCAT 57.076 36.364 0.00 0.00 34.97 2.90
4239 4822 5.060816 CCGCTTATTACAACAAGCACAAATG 59.939 40.000 5.87 0.00 45.99 2.32
4315 6275 6.018542 CAGACTTATAGACATATGAGACGCG 58.981 44.000 10.38 3.53 31.20 6.01
4445 6423 2.290260 TGCAACCAGATCCTAACACCTG 60.290 50.000 0.00 0.00 0.00 4.00
4446 6424 1.985159 TGCAACCAGATCCTAACACCT 59.015 47.619 0.00 0.00 0.00 4.00
4487 6482 6.938507 ACAATCTGTAGTGGTATTCGGTTAA 58.061 36.000 0.00 0.00 0.00 2.01
4544 6540 5.489792 AGCTAGATCCAACAGAAGTTCAA 57.510 39.130 5.50 0.00 35.28 2.69
4583 6581 1.522355 CATCGATGCCGCAACTCCT 60.522 57.895 13.37 0.00 35.37 3.69
4595 6593 2.107031 TGGAATGGCCTGATTCATCGAT 59.893 45.455 15.60 0.00 34.50 3.59
4599 6597 3.918566 TCAATGGAATGGCCTGATTCAT 58.081 40.909 15.60 4.86 34.50 2.57
4606 6604 3.463048 AAGTCTTCAATGGAATGGCCT 57.537 42.857 3.32 0.00 37.63 5.19
4615 6613 5.520376 AACCAGTTCCAAAGTCTTCAATG 57.480 39.130 0.00 0.00 0.00 2.82
4693 6691 3.075641 GGGACCGGGACCAGTCTC 61.076 72.222 17.21 6.03 33.39 3.36
4697 6695 4.489771 GCATGGGACCGGGACCAG 62.490 72.222 21.67 15.19 40.67 4.00
4700 6698 4.028490 TGTGCATGGGACCGGGAC 62.028 66.667 6.32 0.00 0.00 4.46
4703 6701 3.680620 ATCGTGTGCATGGGACCGG 62.681 63.158 0.00 0.00 0.00 5.28
4719 6717 0.394352 ACAAACCTCCATCCCGCATC 60.394 55.000 0.00 0.00 0.00 3.91
4740 6738 1.087501 GTTTTGACCCGGATCTGCTC 58.912 55.000 0.73 0.00 0.00 4.26
4743 6741 1.745087 CATGGTTTTGACCCGGATCTG 59.255 52.381 0.73 0.00 0.00 2.90
4750 6748 1.273327 CCAAGAGCATGGTTTTGACCC 59.727 52.381 24.98 0.00 35.65 4.46
4791 6789 1.008424 ACATATCAGAGCGTCGCCG 60.008 57.895 14.86 2.82 37.07 6.46
4794 6792 1.389853 CGACACATATCAGAGCGTCG 58.610 55.000 0.00 0.00 40.04 5.12
4796 6794 1.065701 GGACGACACATATCAGAGCGT 59.934 52.381 0.00 0.00 0.00 5.07
4798 6796 1.269831 GGGGACGACACATATCAGAGC 60.270 57.143 0.00 0.00 0.00 4.09
4803 6801 3.804036 TGAAATGGGGACGACACATATC 58.196 45.455 0.00 0.00 0.00 1.63
4804 6802 3.924114 TGAAATGGGGACGACACATAT 57.076 42.857 0.00 0.00 0.00 1.78
4805 6803 3.605634 CTTGAAATGGGGACGACACATA 58.394 45.455 0.00 0.00 0.00 2.29
4806 6804 2.436417 CTTGAAATGGGGACGACACAT 58.564 47.619 0.00 0.00 0.00 3.21
4833 6831 1.878975 GTTAGAGCTTCTCCGCGGC 60.879 63.158 23.51 8.49 34.40 6.53
4837 6835 2.096248 AGAGGTGTTAGAGCTTCTCCG 58.904 52.381 0.00 0.00 30.42 4.63
4838 6836 2.829120 ACAGAGGTGTTAGAGCTTCTCC 59.171 50.000 0.00 0.00 30.30 3.71
4847 6845 4.767928 AGAGGTAGTTGACAGAGGTGTTAG 59.232 45.833 0.00 0.00 36.88 2.34
4849 6847 3.322254 CAGAGGTAGTTGACAGAGGTGTT 59.678 47.826 0.00 0.00 36.88 3.32
4853 6851 2.757868 CTCCAGAGGTAGTTGACAGAGG 59.242 54.545 0.00 0.00 0.00 3.69
4858 6856 3.306849 GGGTTTCTCCAGAGGTAGTTGAC 60.307 52.174 0.00 0.00 38.11 3.18
4861 6859 3.277416 AGGGTTTCTCCAGAGGTAGTT 57.723 47.619 0.00 0.00 38.11 2.24
4862 6860 3.596956 TCTAGGGTTTCTCCAGAGGTAGT 59.403 47.826 0.00 0.00 38.11 2.73
4865 6863 3.786213 ATCTAGGGTTTCTCCAGAGGT 57.214 47.619 0.00 0.00 38.11 3.85
4870 6868 4.863548 TCGACTAATCTAGGGTTTCTCCA 58.136 43.478 0.00 0.00 38.11 3.86
4871 6869 5.535406 TGATCGACTAATCTAGGGTTTCTCC 59.465 44.000 0.00 0.00 0.00 3.71
4872 6870 6.487331 TCTGATCGACTAATCTAGGGTTTCTC 59.513 42.308 0.00 0.00 0.00 2.87
4873 6871 6.366340 TCTGATCGACTAATCTAGGGTTTCT 58.634 40.000 0.00 0.00 0.00 2.52
4886 6884 2.031069 GCCGCAGTTATCTGATCGACTA 60.031 50.000 4.94 0.00 43.76 2.59
4888 6886 1.132588 GCCGCAGTTATCTGATCGAC 58.867 55.000 4.94 0.00 43.76 4.20
4890 6888 1.880601 GCGCCGCAGTTATCTGATCG 61.881 60.000 3.15 5.47 43.76 3.69
4895 6893 0.807667 CAAGAGCGCCGCAGTTATCT 60.808 55.000 13.36 1.05 0.00 1.98
4899 6897 3.349006 CACAAGAGCGCCGCAGTT 61.349 61.111 13.36 0.00 0.00 3.16
4907 6905 2.388232 GGGTAACGGCACAAGAGCG 61.388 63.158 0.00 0.00 34.64 5.03
4930 6928 1.452108 CTCCAAGAATGACGCCCCC 60.452 63.158 0.00 0.00 0.00 5.40
4936 6934 2.479566 TGCTCACCTCCAAGAATGAC 57.520 50.000 0.00 0.00 0.00 3.06
4937 6935 3.349927 CAATGCTCACCTCCAAGAATGA 58.650 45.455 0.00 0.00 0.00 2.57
4962 6960 0.471211 AACCGTTCTCTGGTCCCTCA 60.471 55.000 0.00 0.00 39.29 3.86
4968 6966 0.600255 CGCTGAAACCGTTCTCTGGT 60.600 55.000 0.00 0.00 42.98 4.00
4970 6968 0.600255 ACCGCTGAAACCGTTCTCTG 60.600 55.000 0.00 0.00 34.60 3.35
4972 6970 1.566018 CCACCGCTGAAACCGTTCTC 61.566 60.000 0.00 0.00 34.60 2.87
4973 6971 1.597027 CCACCGCTGAAACCGTTCT 60.597 57.895 0.00 0.00 34.60 3.01
4975 6973 1.597027 CTCCACCGCTGAAACCGTT 60.597 57.895 0.00 0.00 0.00 4.44
4987 6985 2.746277 ATGAAACGCCGCTCCACC 60.746 61.111 0.00 0.00 0.00 4.61
5006 7004 4.377471 GACGTCATCGATGCGTCA 57.623 55.556 39.33 20.10 46.40 4.35
5017 7015 4.022589 CCCTGTTTTCTACTAGTGACGTCA 60.023 45.833 15.76 15.76 0.00 4.35
5018 7016 4.483311 CCCTGTTTTCTACTAGTGACGTC 58.517 47.826 9.11 9.11 0.00 4.34
5019 7017 3.305881 GCCCTGTTTTCTACTAGTGACGT 60.306 47.826 5.39 0.00 0.00 4.34
5020 7018 3.056749 AGCCCTGTTTTCTACTAGTGACG 60.057 47.826 5.39 0.00 0.00 4.35
5021 7019 4.538746 AGCCCTGTTTTCTACTAGTGAC 57.461 45.455 5.39 0.00 0.00 3.67
5022 7020 4.262894 CCAAGCCCTGTTTTCTACTAGTGA 60.263 45.833 5.39 0.00 0.00 3.41
5023 7021 4.003648 CCAAGCCCTGTTTTCTACTAGTG 58.996 47.826 5.39 0.00 0.00 2.74
5024 7022 3.009143 CCCAAGCCCTGTTTTCTACTAGT 59.991 47.826 0.00 0.00 0.00 2.57
5025 7023 3.009143 ACCCAAGCCCTGTTTTCTACTAG 59.991 47.826 0.00 0.00 0.00 2.57
5026 7024 2.983898 ACCCAAGCCCTGTTTTCTACTA 59.016 45.455 0.00 0.00 0.00 1.82
5027 7025 1.780919 ACCCAAGCCCTGTTTTCTACT 59.219 47.619 0.00 0.00 0.00 2.57
5028 7026 2.160205 GACCCAAGCCCTGTTTTCTAC 58.840 52.381 0.00 0.00 0.00 2.59
5029 7027 1.074889 GGACCCAAGCCCTGTTTTCTA 59.925 52.381 0.00 0.00 0.00 2.10
5030 7028 0.178961 GGACCCAAGCCCTGTTTTCT 60.179 55.000 0.00 0.00 0.00 2.52
5031 7029 0.469144 TGGACCCAAGCCCTGTTTTC 60.469 55.000 0.00 0.00 0.00 2.29
5032 7030 0.031616 TTGGACCCAAGCCCTGTTTT 60.032 50.000 0.00 0.00 0.00 2.43
5033 7031 0.469892 CTTGGACCCAAGCCCTGTTT 60.470 55.000 15.04 0.00 45.38 2.83
5034 7032 1.153756 CTTGGACCCAAGCCCTGTT 59.846 57.895 15.04 0.00 45.38 3.16
5035 7033 2.846532 CTTGGACCCAAGCCCTGT 59.153 61.111 15.04 0.00 45.38 4.00
5042 7040 2.080336 CTTCCCCTGCTTGGACCCAA 62.080 60.000 1.11 1.11 38.35 4.12
5043 7041 2.451493 TTCCCCTGCTTGGACCCA 60.451 61.111 0.00 0.00 38.35 4.51
5044 7042 2.356667 CTTCCCCTGCTTGGACCC 59.643 66.667 0.00 0.00 38.35 4.46
5045 7043 2.361737 GCTTCCCCTGCTTGGACC 60.362 66.667 0.00 0.00 38.35 4.46
5046 7044 2.361737 GGCTTCCCCTGCTTGGAC 60.362 66.667 0.00 0.00 38.35 4.02
5056 7054 0.539669 CCGGGATTAATGGGCTTCCC 60.540 60.000 0.00 0.00 45.71 3.97
5057 7055 0.185175 ACCGGGATTAATGGGCTTCC 59.815 55.000 6.32 0.00 0.00 3.46
5058 7056 1.954382 GAACCGGGATTAATGGGCTTC 59.046 52.381 6.32 0.00 0.00 3.86
5059 7057 1.286553 TGAACCGGGATTAATGGGCTT 59.713 47.619 6.32 0.00 0.00 4.35
5060 7058 0.923358 TGAACCGGGATTAATGGGCT 59.077 50.000 6.32 0.00 0.00 5.19
5061 7059 1.029681 GTGAACCGGGATTAATGGGC 58.970 55.000 6.32 0.00 0.00 5.36
5062 7060 2.092646 TGAGTGAACCGGGATTAATGGG 60.093 50.000 6.32 0.00 0.00 4.00
5063 7061 2.943033 GTGAGTGAACCGGGATTAATGG 59.057 50.000 6.32 0.00 0.00 3.16
5064 7062 2.607635 CGTGAGTGAACCGGGATTAATG 59.392 50.000 6.32 0.00 0.00 1.90
5065 7063 2.498481 TCGTGAGTGAACCGGGATTAAT 59.502 45.455 6.32 0.00 0.00 1.40
5066 7064 1.894466 TCGTGAGTGAACCGGGATTAA 59.106 47.619 6.32 0.00 0.00 1.40
5067 7065 1.548081 TCGTGAGTGAACCGGGATTA 58.452 50.000 6.32 0.00 0.00 1.75
5068 7066 0.682852 TTCGTGAGTGAACCGGGATT 59.317 50.000 6.32 0.00 0.00 3.01
5069 7067 0.037605 GTTCGTGAGTGAACCGGGAT 60.038 55.000 6.32 0.00 41.88 3.85
5070 7068 1.364901 GTTCGTGAGTGAACCGGGA 59.635 57.895 6.32 0.00 41.88 5.14
5071 7069 3.946907 GTTCGTGAGTGAACCGGG 58.053 61.111 6.32 0.00 41.88 5.73
5075 7073 0.942884 GTCCCGGTTCGTGAGTGAAC 60.943 60.000 0.00 0.00 45.91 3.18
5076 7074 1.364901 GTCCCGGTTCGTGAGTGAA 59.635 57.895 0.00 0.00 0.00 3.18
5077 7075 2.567497 GGTCCCGGTTCGTGAGTGA 61.567 63.158 0.00 0.00 0.00 3.41
5078 7076 2.048503 GGTCCCGGTTCGTGAGTG 60.049 66.667 0.00 0.00 0.00 3.51
5079 7077 3.308705 GGGTCCCGGTTCGTGAGT 61.309 66.667 0.00 0.00 0.00 3.41
5080 7078 2.656069 ATGGGTCCCGGTTCGTGAG 61.656 63.158 2.65 0.00 0.00 3.51
5081 7079 2.605295 ATGGGTCCCGGTTCGTGA 60.605 61.111 2.65 0.00 0.00 4.35
5082 7080 2.435938 CATGGGTCCCGGTTCGTG 60.436 66.667 2.65 0.00 0.00 4.35
5083 7081 3.712907 CCATGGGTCCCGGTTCGT 61.713 66.667 2.85 0.00 0.00 3.85
5090 7088 3.850098 CTATGCCGCCATGGGTCCC 62.850 68.421 15.13 0.00 38.63 4.46
5091 7089 2.281761 CTATGCCGCCATGGGTCC 60.282 66.667 15.13 0.00 38.63 4.46
5092 7090 2.281761 CCTATGCCGCCATGGGTC 60.282 66.667 15.13 0.00 43.14 4.46
5095 7093 2.281761 GGACCTATGCCGCCATGG 60.282 66.667 7.63 7.63 42.50 3.66
5096 7094 2.281761 GGGACCTATGCCGCCATG 60.282 66.667 0.00 0.00 32.85 3.66
5102 7100 1.458967 ACCTACCGGGACCTATGCC 60.459 63.158 6.32 0.00 38.76 4.40
5103 7101 0.757935 TGACCTACCGGGACCTATGC 60.758 60.000 6.32 0.00 38.76 3.14
5104 7102 1.038280 GTGACCTACCGGGACCTATG 58.962 60.000 6.32 0.00 38.76 2.23
5105 7103 0.466922 CGTGACCTACCGGGACCTAT 60.467 60.000 6.32 0.00 38.76 2.57
5106 7104 1.077501 CGTGACCTACCGGGACCTA 60.078 63.158 6.32 0.00 38.76 3.08
5107 7105 2.362120 CGTGACCTACCGGGACCT 60.362 66.667 6.32 0.00 38.76 3.85
5108 7106 3.455469 CCGTGACCTACCGGGACC 61.455 72.222 6.32 0.00 40.54 4.46
5113 7111 2.956987 ACGAACCGTGACCTACCG 59.043 61.111 0.00 0.00 39.18 4.02
5122 7120 4.003788 CCTGGCCTCACGAACCGT 62.004 66.667 3.32 0.00 42.36 4.83
5123 7121 4.760047 CCCTGGCCTCACGAACCG 62.760 72.222 3.32 0.00 0.00 4.44
5124 7122 4.410400 CCCCTGGCCTCACGAACC 62.410 72.222 3.32 0.00 0.00 3.62
5125 7123 4.410400 CCCCCTGGCCTCACGAAC 62.410 72.222 3.32 0.00 0.00 3.95
5152 7150 1.146263 GGACCAATGCCCTACGAGG 59.854 63.158 0.00 0.00 34.30 4.63
5153 7151 1.146263 GGGACCAATGCCCTACGAG 59.854 63.158 0.00 0.00 42.56 4.18
5154 7152 2.727392 CGGGACCAATGCCCTACGA 61.727 63.158 0.00 0.00 43.72 3.43
5155 7153 2.203015 CGGGACCAATGCCCTACG 60.203 66.667 0.00 0.00 43.72 3.51
5156 7154 2.192175 CCGGGACCAATGCCCTAC 59.808 66.667 0.00 0.00 43.72 3.18
5157 7155 1.917336 GAACCGGGACCAATGCCCTA 61.917 60.000 6.32 0.00 43.72 3.53
5158 7156 3.264845 AACCGGGACCAATGCCCT 61.265 61.111 6.32 0.00 43.72 5.19
5159 7157 2.754254 GAACCGGGACCAATGCCC 60.754 66.667 6.32 0.00 42.41 5.36
5160 7158 3.131478 CGAACCGGGACCAATGCC 61.131 66.667 6.32 0.00 0.00 4.40
5161 7159 2.359478 ACGAACCGGGACCAATGC 60.359 61.111 6.32 0.00 0.00 3.56
5162 7160 1.019278 CAGACGAACCGGGACCAATG 61.019 60.000 6.32 0.00 0.00 2.82
5163 7161 1.189524 TCAGACGAACCGGGACCAAT 61.190 55.000 6.32 0.00 0.00 3.16
5164 7162 1.833492 TCAGACGAACCGGGACCAA 60.833 57.895 6.32 0.00 0.00 3.67
5165 7163 2.203523 TCAGACGAACCGGGACCA 60.204 61.111 6.32 0.00 0.00 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.