Multiple sequence alignment - TraesCS5B01G547800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G547800 chr5B 100.000 2765 0 0 1 2765 700573144 700575908 0.000000e+00 5107.0
1 TraesCS5B01G547800 chr5B 84.310 529 55 16 1797 2317 700598880 700599388 2.470000e-135 492.0
2 TraesCS5B01G547800 chr5D 96.636 2259 51 12 1 2258 549018227 549020461 0.000000e+00 3727.0
3 TraesCS5B01G547800 chr5D 84.495 574 54 21 1758 2317 549031216 549031768 4.050000e-148 534.0
4 TraesCS5B01G547800 chr5D 89.333 225 10 7 2257 2481 549020539 549020749 1.260000e-68 270.0
5 TraesCS5B01G547800 chr5D 96.522 115 4 0 2540 2654 549020748 549020862 1.010000e-44 191.0
6 TraesCS5B01G547800 chr5D 94.262 122 6 1 2644 2765 549020896 549021016 4.700000e-43 185.0
7 TraesCS5B01G547800 chr4A 96.002 1851 50 12 801 2650 620461933 620463760 0.000000e+00 2987.0
8 TraesCS5B01G547800 chr4A 87.845 362 40 2 1 360 620461105 620461464 3.290000e-114 422.0
9 TraesCS5B01G547800 chr4A 92.623 122 9 0 2644 2765 620463784 620463905 2.830000e-40 176.0
10 TraesCS5B01G547800 chr4A 85.556 180 6 4 569 748 620461775 620461934 1.320000e-38 171.0
11 TraesCS5B01G547800 chr6D 86.957 230 12 3 569 794 22107417 22107202 2.750000e-60 243.0
12 TraesCS5B01G547800 chr6D 95.652 46 0 2 429 473 22107463 22107419 3.820000e-09 73.1
13 TraesCS5B01G547800 chr6D 97.500 40 1 0 514 553 27672424 27672385 4.940000e-08 69.4
14 TraesCS5B01G547800 chr7B 97.619 42 1 0 509 550 579994068 579994109 3.820000e-09 73.1
15 TraesCS5B01G547800 chr3A 97.674 43 0 1 513 554 436720743 436720701 3.820000e-09 73.1
16 TraesCS5B01G547800 chr1D 100.000 37 0 0 514 550 465172965 465173001 4.940000e-08 69.4
17 TraesCS5B01G547800 chr1D 100.000 37 0 0 514 550 487035207 487035243 4.940000e-08 69.4
18 TraesCS5B01G547800 chr1A 100.000 37 0 0 514 550 543125336 543125372 4.940000e-08 69.4
19 TraesCS5B01G547800 chr2B 95.349 43 1 1 515 557 425417481 425417522 1.780000e-07 67.6
20 TraesCS5B01G547800 chr6B 97.368 38 0 1 513 550 100571680 100571644 2.300000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G547800 chr5B 700573144 700575908 2764 False 5107.00 5107 100.00000 1 2765 1 chr5B.!!$F1 2764
1 TraesCS5B01G547800 chr5B 700598880 700599388 508 False 492.00 492 84.31000 1797 2317 1 chr5B.!!$F2 520
2 TraesCS5B01G547800 chr5D 549018227 549021016 2789 False 1093.25 3727 94.18825 1 2765 4 chr5D.!!$F2 2764
3 TraesCS5B01G547800 chr5D 549031216 549031768 552 False 534.00 534 84.49500 1758 2317 1 chr5D.!!$F1 559
4 TraesCS5B01G547800 chr4A 620461105 620463905 2800 False 939.00 2987 90.50650 1 2765 4 chr4A.!!$F1 2764

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
153 154 0.177836 CCCACCACGCAGACATATCA 59.822 55.0 0.0 0.0 0.0 2.15 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1907 2016 3.632333 ACGACAGAGATAAGGTGATGGA 58.368 45.455 0.0 0.0 0.0 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 3.499338 TGAAGTTGGCATTTCTGACCAT 58.501 40.909 11.85 0.00 31.51 3.55
30 31 0.608035 TTTCTGACCATCGCCAACCC 60.608 55.000 0.00 0.00 0.00 4.11
110 111 2.075355 ATTCCCCACCGCTTGAACCA 62.075 55.000 0.00 0.00 0.00 3.67
119 120 1.063488 GCTTGAACCAACACGCGTT 59.937 52.632 10.22 0.00 35.01 4.84
153 154 0.177836 CCCACCACGCAGACATATCA 59.822 55.000 0.00 0.00 0.00 2.15
206 207 0.462047 GGTTCGGTCCCACTATGCAG 60.462 60.000 0.00 0.00 0.00 4.41
338 341 8.451908 AAATTTTGATATAGAGTGCCACTACC 57.548 34.615 0.00 0.00 0.00 3.18
345 348 0.910088 GAGTGCCACTACCCCCTCTT 60.910 60.000 0.00 0.00 0.00 2.85
420 460 9.598517 CATAACAAAAATAGCATTTGGGTATGT 57.401 29.630 11.23 0.00 41.08 2.29
607 712 5.774498 ATGGTTCTTTTCGAGAGCTTTTT 57.226 34.783 0.00 0.00 36.03 1.94
662 767 1.298667 GGCGAGGTGGGCTAAGAAA 59.701 57.895 0.00 0.00 0.00 2.52
917 1025 1.675720 GAGAGCAGAGGGGAGTGAGC 61.676 65.000 0.00 0.00 0.00 4.26
918 1026 3.073735 AGCAGAGGGGAGTGAGCG 61.074 66.667 0.00 0.00 0.00 5.03
919 1027 3.071206 GCAGAGGGGAGTGAGCGA 61.071 66.667 0.00 0.00 0.00 4.93
920 1028 3.074999 GCAGAGGGGAGTGAGCGAG 62.075 68.421 0.00 0.00 0.00 5.03
921 1029 2.757917 AGAGGGGAGTGAGCGAGC 60.758 66.667 0.00 0.00 0.00 5.03
922 1030 3.071206 GAGGGGAGTGAGCGAGCA 61.071 66.667 0.00 0.00 0.00 4.26
923 1031 3.073735 AGGGGAGTGAGCGAGCAG 61.074 66.667 0.00 0.00 0.00 4.24
924 1032 3.386237 GGGGAGTGAGCGAGCAGT 61.386 66.667 0.00 0.00 0.00 4.40
925 1033 2.659610 GGGAGTGAGCGAGCAGTT 59.340 61.111 0.00 0.00 0.00 3.16
926 1034 1.446966 GGGAGTGAGCGAGCAGTTC 60.447 63.158 0.00 0.00 0.00 3.01
927 1035 1.446966 GGAGTGAGCGAGCAGTTCC 60.447 63.158 0.00 0.00 0.00 3.62
992 1100 4.866224 CCGCCACACACCACACCA 62.866 66.667 0.00 0.00 0.00 4.17
993 1101 3.582120 CGCCACACACCACACCAC 61.582 66.667 0.00 0.00 0.00 4.16
994 1102 2.439338 GCCACACACCACACCACA 60.439 61.111 0.00 0.00 0.00 4.17
995 1103 2.770589 GCCACACACCACACCACAC 61.771 63.158 0.00 0.00 0.00 3.82
996 1104 2.118404 CCACACACCACACCACACC 61.118 63.158 0.00 0.00 0.00 4.16
1846 1955 5.386924 TCCTCTCCCATAGAAAGCTAGTAC 58.613 45.833 0.00 0.00 32.46 2.73
1906 2015 7.238710 TCCTAGTGTGTATATAGGCTTGATGA 58.761 38.462 0.00 0.00 36.75 2.92
1907 2016 7.895962 TCCTAGTGTGTATATAGGCTTGATGAT 59.104 37.037 0.00 0.00 36.75 2.45
1908 2017 8.194104 CCTAGTGTGTATATAGGCTTGATGATC 58.806 40.741 0.00 0.00 30.28 2.92
1909 2018 6.940739 AGTGTGTATATAGGCTTGATGATCC 58.059 40.000 0.00 0.00 0.00 3.36
2019 2139 2.332063 ATAAGGTGAATGCAGTCCCG 57.668 50.000 12.27 0.00 0.00 5.14
2168 2293 3.889815 TGGATCTCCATCGCAGATTTTT 58.110 40.909 0.00 0.00 45.12 1.94
2261 2465 9.982651 GACATATTGTGCCTTTCTAACTAGATA 57.017 33.333 0.00 0.00 31.40 1.98
2273 2477 8.896722 TTTCTAACTAGATACTTCAGGGTCTT 57.103 34.615 0.00 0.00 31.40 3.01
2274 2478 7.883391 TCTAACTAGATACTTCAGGGTCTTG 57.117 40.000 0.00 0.00 0.00 3.02
2275 2479 5.346181 AACTAGATACTTCAGGGTCTTGC 57.654 43.478 0.00 0.00 0.00 4.01
2337 2541 6.979817 TCTTTTGACAATTTGATCCAACACTG 59.020 34.615 2.79 0.00 0.00 3.66
2345 2549 5.782893 TTTGATCCAACACTGTTTAAGGG 57.217 39.130 0.00 0.00 34.37 3.95
2368 2572 3.085533 TGTGGTACCATGGTATTGCAAC 58.914 45.455 27.03 17.68 32.82 4.17
2410 2614 6.049790 GGAAATTGACAGTAGTGATCCTACC 58.950 44.000 4.09 0.00 46.15 3.18
2487 2691 2.481289 GCTTTCAGCAGTTACCCTCT 57.519 50.000 0.00 0.00 41.89 3.69
2488 2692 3.611766 GCTTTCAGCAGTTACCCTCTA 57.388 47.619 0.00 0.00 41.89 2.43
2489 2693 4.143986 GCTTTCAGCAGTTACCCTCTAT 57.856 45.455 0.00 0.00 41.89 1.98
2490 2694 4.123506 GCTTTCAGCAGTTACCCTCTATC 58.876 47.826 0.00 0.00 41.89 2.08
2491 2695 4.698575 CTTTCAGCAGTTACCCTCTATCC 58.301 47.826 0.00 0.00 0.00 2.59
2492 2696 3.398318 TCAGCAGTTACCCTCTATCCA 57.602 47.619 0.00 0.00 0.00 3.41
2493 2697 3.719871 TCAGCAGTTACCCTCTATCCAA 58.280 45.455 0.00 0.00 0.00 3.53
2494 2698 4.298626 TCAGCAGTTACCCTCTATCCAAT 58.701 43.478 0.00 0.00 0.00 3.16
2495 2699 5.464069 TCAGCAGTTACCCTCTATCCAATA 58.536 41.667 0.00 0.00 0.00 1.90
2496 2700 6.084738 TCAGCAGTTACCCTCTATCCAATAT 58.915 40.000 0.00 0.00 0.00 1.28
2497 2701 6.014242 TCAGCAGTTACCCTCTATCCAATATG 60.014 42.308 0.00 0.00 0.00 1.78
2498 2702 5.249393 AGCAGTTACCCTCTATCCAATATGG 59.751 44.000 0.00 0.00 39.43 2.74
2499 2703 5.571658 GCAGTTACCCTCTATCCAATATGGG 60.572 48.000 0.00 0.00 38.32 4.00
2500 2704 5.045578 CAGTTACCCTCTATCCAATATGGGG 60.046 48.000 0.00 0.00 38.32 4.96
2501 2705 3.674358 ACCCTCTATCCAATATGGGGT 57.326 47.619 0.00 0.00 40.47 4.95
2502 2706 3.532102 ACCCTCTATCCAATATGGGGTC 58.468 50.000 0.00 0.00 41.30 4.46
2503 2707 3.115962 ACCCTCTATCCAATATGGGGTCA 60.116 47.826 0.00 0.00 41.30 4.02
2504 2708 3.521126 CCCTCTATCCAATATGGGGTCAG 59.479 52.174 0.00 0.00 38.32 3.51
2505 2709 4.429505 CCTCTATCCAATATGGGGTCAGA 58.570 47.826 0.00 0.00 38.32 3.27
2506 2710 5.035556 CCTCTATCCAATATGGGGTCAGAT 58.964 45.833 0.00 0.00 38.32 2.90
2507 2711 5.490357 CCTCTATCCAATATGGGGTCAGATT 59.510 44.000 0.00 0.00 38.32 2.40
2508 2712 6.378661 TCTATCCAATATGGGGTCAGATTG 57.621 41.667 0.00 6.72 46.44 2.67
2509 2713 5.851693 TCTATCCAATATGGGGTCAGATTGT 59.148 40.000 11.21 0.00 45.83 2.71
2510 2714 4.437682 TCCAATATGGGGTCAGATTGTC 57.562 45.455 11.21 0.00 45.83 3.18
2511 2715 3.785325 TCCAATATGGGGTCAGATTGTCA 59.215 43.478 11.21 0.00 45.83 3.58
2512 2716 4.416513 TCCAATATGGGGTCAGATTGTCAT 59.583 41.667 11.21 0.00 45.83 3.06
2513 2717 4.521639 CCAATATGGGGTCAGATTGTCATG 59.478 45.833 11.21 0.00 45.83 3.07
2514 2718 5.135383 CAATATGGGGTCAGATTGTCATGT 58.865 41.667 5.79 0.00 43.65 3.21
2515 2719 3.744940 ATGGGGTCAGATTGTCATGTT 57.255 42.857 0.00 0.00 0.00 2.71
2516 2720 3.524095 TGGGGTCAGATTGTCATGTTT 57.476 42.857 0.00 0.00 0.00 2.83
2517 2721 3.843422 TGGGGTCAGATTGTCATGTTTT 58.157 40.909 0.00 0.00 0.00 2.43
2518 2722 4.222336 TGGGGTCAGATTGTCATGTTTTT 58.778 39.130 0.00 0.00 0.00 1.94
2519 2723 4.280677 TGGGGTCAGATTGTCATGTTTTTC 59.719 41.667 0.00 0.00 0.00 2.29
2520 2724 4.280677 GGGGTCAGATTGTCATGTTTTTCA 59.719 41.667 0.00 0.00 0.00 2.69
2521 2725 5.464168 GGGTCAGATTGTCATGTTTTTCAG 58.536 41.667 0.00 0.00 0.00 3.02
2522 2726 5.010012 GGGTCAGATTGTCATGTTTTTCAGT 59.990 40.000 0.00 0.00 0.00 3.41
2523 2727 6.461509 GGGTCAGATTGTCATGTTTTTCAGTT 60.462 38.462 0.00 0.00 0.00 3.16
2524 2728 7.255451 GGGTCAGATTGTCATGTTTTTCAGTTA 60.255 37.037 0.00 0.00 0.00 2.24
2525 2729 8.299570 GGTCAGATTGTCATGTTTTTCAGTTAT 58.700 33.333 0.00 0.00 0.00 1.89
2526 2730 9.683069 GTCAGATTGTCATGTTTTTCAGTTATT 57.317 29.630 0.00 0.00 0.00 1.40
2527 2731 9.897744 TCAGATTGTCATGTTTTTCAGTTATTC 57.102 29.630 0.00 0.00 0.00 1.75
2528 2732 9.681692 CAGATTGTCATGTTTTTCAGTTATTCA 57.318 29.630 0.00 0.00 0.00 2.57
2532 2736 9.462174 TTGTCATGTTTTTCAGTTATTCATCAC 57.538 29.630 0.00 0.00 0.00 3.06
2533 2737 8.849168 TGTCATGTTTTTCAGTTATTCATCACT 58.151 29.630 0.00 0.00 0.00 3.41
2536 2740 9.559958 CATGTTTTTCAGTTATTCATCACTACC 57.440 33.333 0.00 0.00 0.00 3.18
2537 2741 8.106247 TGTTTTTCAGTTATTCATCACTACCC 57.894 34.615 0.00 0.00 0.00 3.69
2538 2742 7.942341 TGTTTTTCAGTTATTCATCACTACCCT 59.058 33.333 0.00 0.00 0.00 4.34
2614 2878 7.994334 TCTGCTTTGTTAACTTAGTTTTCCCTA 59.006 33.333 1.94 0.00 0.00 3.53
2650 2914 4.340950 GGTTTGATGGAACTTGAAGTTGGA 59.659 41.667 16.25 1.62 38.80 3.53
2714 3022 7.358263 TGAAACATTCCTATAATAGGGGCAAA 58.642 34.615 0.00 0.00 46.24 3.68
2736 3044 8.557029 GCAAAGCTATCCGTGTATTACTTAAAT 58.443 33.333 0.00 0.00 0.00 1.40
2745 3054 9.369904 TCCGTGTATTACTTAAATTTACTGGTC 57.630 33.333 0.00 0.00 0.00 4.02
2753 3062 6.293698 ACTTAAATTTACTGGTCGGTCAGTT 58.706 36.000 14.71 2.42 44.74 3.16
2759 3068 1.343465 ACTGGTCGGTCAGTTCGAAAT 59.657 47.619 0.00 0.00 44.74 2.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
14 15 2.819595 CGGGTTGGCGATGGTCAG 60.820 66.667 0.00 0.00 0.00 3.51
21 22 4.629523 GGTTGACCGGGTTGGCGA 62.630 66.667 6.32 0.00 43.94 5.54
119 120 0.604578 GTGGGTAGTGTAAGACCGCA 59.395 55.000 0.00 0.00 36.51 5.69
206 207 1.071605 CAACAAGACGCTAGTGGCTC 58.928 55.000 13.21 0.00 39.13 4.70
323 326 0.642710 AGGGGGTAGTGGCACTCTAT 59.357 55.000 25.80 2.30 36.78 1.98
338 341 4.068599 GAGAGTTTCACTTCAAAGAGGGG 58.931 47.826 0.00 0.00 0.00 4.79
345 348 5.163311 TGACCTGATGAGAGTTTCACTTCAA 60.163 40.000 0.00 0.00 38.99 2.69
662 767 6.875972 TTCCTATGACTTTCTTTCCTAGCT 57.124 37.500 0.00 0.00 0.00 3.32
768 873 1.606885 CCTAGGCGTTGACCGGGTAA 61.607 60.000 6.32 0.00 36.94 2.85
774 879 1.019805 GTCAAGCCTAGGCGTTGACC 61.020 60.000 37.57 28.45 44.09 4.02
917 1025 2.306341 ACTGATGATGGAACTGCTCG 57.694 50.000 0.00 0.00 0.00 5.03
918 1026 2.681848 CCAACTGATGATGGAACTGCTC 59.318 50.000 0.00 0.00 38.26 4.26
919 1027 2.719739 CCAACTGATGATGGAACTGCT 58.280 47.619 0.00 0.00 38.26 4.24
920 1028 1.133790 GCCAACTGATGATGGAACTGC 59.866 52.381 0.00 0.00 38.26 4.40
921 1029 2.422479 CTGCCAACTGATGATGGAACTG 59.578 50.000 0.00 0.00 38.26 3.16
922 1030 2.040813 ACTGCCAACTGATGATGGAACT 59.959 45.455 0.00 0.00 38.26 3.01
923 1031 2.163010 CACTGCCAACTGATGATGGAAC 59.837 50.000 0.00 0.00 38.26 3.62
924 1032 2.439409 CACTGCCAACTGATGATGGAA 58.561 47.619 0.00 0.00 38.26 3.53
925 1033 1.951895 GCACTGCCAACTGATGATGGA 60.952 52.381 0.00 0.00 38.26 3.41
926 1034 0.454600 GCACTGCCAACTGATGATGG 59.545 55.000 0.00 0.00 38.91 3.51
992 1100 4.891727 GATCGGCCATCGCGGTGT 62.892 66.667 19.62 0.00 39.05 4.16
993 1101 4.592192 AGATCGGCCATCGCGGTG 62.592 66.667 13.72 13.72 36.50 4.94
994 1102 4.286320 GAGATCGGCCATCGCGGT 62.286 66.667 6.13 0.00 36.50 5.68
996 1104 4.284860 TGGAGATCGGCCATCGCG 62.285 66.667 2.24 0.00 36.50 5.87
1846 1955 4.008330 CCATAAGCTAATGCCCTCATCAG 58.992 47.826 0.00 0.00 40.80 2.90
1906 2015 4.219115 ACGACAGAGATAAGGTGATGGAT 58.781 43.478 0.00 0.00 0.00 3.41
1907 2016 3.632333 ACGACAGAGATAAGGTGATGGA 58.368 45.455 0.00 0.00 0.00 3.41
1908 2017 5.515797 TTACGACAGAGATAAGGTGATGG 57.484 43.478 0.00 0.00 0.00 3.51
1909 2018 6.739112 TCATTACGACAGAGATAAGGTGATG 58.261 40.000 0.00 0.00 0.00 3.07
2019 2139 5.966636 TGAGCACATAACAACGACATATC 57.033 39.130 0.00 0.00 0.00 1.63
2168 2293 5.975693 ATTTCCAACAGCTTTCCGAAATA 57.024 34.783 6.75 0.00 30.34 1.40
2261 2465 0.250640 CAGCAGCAAGACCCTGAAGT 60.251 55.000 0.00 0.00 32.03 3.01
2337 2541 2.572209 TGGTACCACAGCCCTTAAAC 57.428 50.000 11.60 0.00 0.00 2.01
2345 2549 1.676006 GCAATACCATGGTACCACAGC 59.324 52.381 26.87 20.04 33.01 4.40
2368 2572 4.944962 TTCCGTCAATACAGAAATGCAG 57.055 40.909 0.00 0.00 0.00 4.41
2410 2614 2.428890 AGTGCTTTCTCCTCCGACTATG 59.571 50.000 0.00 0.00 0.00 2.23
2479 2683 5.098663 GACCCCATATTGGATAGAGGGTAA 58.901 45.833 9.49 0.00 41.70 2.85
2480 2684 4.110592 TGACCCCATATTGGATAGAGGGTA 59.889 45.833 9.49 0.39 41.70 3.69
2481 2685 3.115962 TGACCCCATATTGGATAGAGGGT 60.116 47.826 9.35 9.35 43.33 4.34
2482 2686 3.521126 CTGACCCCATATTGGATAGAGGG 59.479 52.174 0.00 0.00 40.96 4.30
2483 2687 4.429505 TCTGACCCCATATTGGATAGAGG 58.570 47.826 0.00 0.00 40.96 3.69
2484 2688 6.013032 ACAATCTGACCCCATATTGGATAGAG 60.013 42.308 0.00 0.00 40.96 2.43
2485 2689 5.851693 ACAATCTGACCCCATATTGGATAGA 59.148 40.000 0.00 0.00 40.96 1.98
2486 2690 6.131972 ACAATCTGACCCCATATTGGATAG 57.868 41.667 0.00 0.00 40.96 2.08
2487 2691 5.610557 TGACAATCTGACCCCATATTGGATA 59.389 40.000 0.00 0.00 40.96 2.59
2488 2692 4.416513 TGACAATCTGACCCCATATTGGAT 59.583 41.667 0.00 0.00 40.96 3.41
2489 2693 3.785325 TGACAATCTGACCCCATATTGGA 59.215 43.478 0.00 0.00 40.96 3.53
2490 2694 4.169059 TGACAATCTGACCCCATATTGG 57.831 45.455 0.00 0.00 39.66 3.16
2491 2695 5.135383 ACATGACAATCTGACCCCATATTG 58.865 41.667 0.00 0.00 40.56 1.90
2492 2696 5.393068 ACATGACAATCTGACCCCATATT 57.607 39.130 0.00 0.00 0.00 1.28
2493 2697 5.393068 AACATGACAATCTGACCCCATAT 57.607 39.130 0.00 0.00 0.00 1.78
2494 2698 4.860802 AACATGACAATCTGACCCCATA 57.139 40.909 0.00 0.00 0.00 2.74
2495 2699 3.744940 AACATGACAATCTGACCCCAT 57.255 42.857 0.00 0.00 0.00 4.00
2496 2700 3.524095 AAACATGACAATCTGACCCCA 57.476 42.857 0.00 0.00 0.00 4.96
2497 2701 4.280677 TGAAAAACATGACAATCTGACCCC 59.719 41.667 0.00 0.00 0.00 4.95
2498 2702 5.010012 ACTGAAAAACATGACAATCTGACCC 59.990 40.000 0.00 0.00 0.00 4.46
2499 2703 6.076981 ACTGAAAAACATGACAATCTGACC 57.923 37.500 0.00 0.00 0.00 4.02
2500 2704 9.683069 AATAACTGAAAAACATGACAATCTGAC 57.317 29.630 0.00 0.00 0.00 3.51
2501 2705 9.897744 GAATAACTGAAAAACATGACAATCTGA 57.102 29.630 0.00 0.00 0.00 3.27
2502 2706 9.681692 TGAATAACTGAAAAACATGACAATCTG 57.318 29.630 0.00 0.00 0.00 2.90
2506 2710 9.462174 GTGATGAATAACTGAAAAACATGACAA 57.538 29.630 0.00 0.00 0.00 3.18
2507 2711 8.849168 AGTGATGAATAACTGAAAAACATGACA 58.151 29.630 0.00 0.00 0.00 3.58
2510 2714 9.559958 GGTAGTGATGAATAACTGAAAAACATG 57.440 33.333 0.00 0.00 0.00 3.21
2511 2715 8.739972 GGGTAGTGATGAATAACTGAAAAACAT 58.260 33.333 0.00 0.00 0.00 2.71
2512 2716 7.942341 AGGGTAGTGATGAATAACTGAAAAACA 59.058 33.333 0.00 0.00 0.00 2.83
2513 2717 8.336801 AGGGTAGTGATGAATAACTGAAAAAC 57.663 34.615 0.00 0.00 0.00 2.43
2514 2718 8.934023 AAGGGTAGTGATGAATAACTGAAAAA 57.066 30.769 0.00 0.00 0.00 1.94
2515 2719 8.934023 AAAGGGTAGTGATGAATAACTGAAAA 57.066 30.769 0.00 0.00 0.00 2.29
2516 2720 8.934023 AAAAGGGTAGTGATGAATAACTGAAA 57.066 30.769 0.00 0.00 0.00 2.69
2517 2721 7.610305 GGAAAAGGGTAGTGATGAATAACTGAA 59.390 37.037 0.00 0.00 0.00 3.02
2518 2722 7.037586 AGGAAAAGGGTAGTGATGAATAACTGA 60.038 37.037 0.00 0.00 0.00 3.41
2519 2723 7.112779 AGGAAAAGGGTAGTGATGAATAACTG 58.887 38.462 0.00 0.00 0.00 3.16
2520 2724 7.272144 AGGAAAAGGGTAGTGATGAATAACT 57.728 36.000 0.00 0.00 0.00 2.24
2521 2725 7.628580 GCAAGGAAAAGGGTAGTGATGAATAAC 60.629 40.741 0.00 0.00 0.00 1.89
2522 2726 6.377146 GCAAGGAAAAGGGTAGTGATGAATAA 59.623 38.462 0.00 0.00 0.00 1.40
2523 2727 5.885912 GCAAGGAAAAGGGTAGTGATGAATA 59.114 40.000 0.00 0.00 0.00 1.75
2524 2728 4.706962 GCAAGGAAAAGGGTAGTGATGAAT 59.293 41.667 0.00 0.00 0.00 2.57
2525 2729 4.079253 GCAAGGAAAAGGGTAGTGATGAA 58.921 43.478 0.00 0.00 0.00 2.57
2526 2730 3.561313 GGCAAGGAAAAGGGTAGTGATGA 60.561 47.826 0.00 0.00 0.00 2.92
2527 2731 2.755103 GGCAAGGAAAAGGGTAGTGATG 59.245 50.000 0.00 0.00 0.00 3.07
2528 2732 2.378547 TGGCAAGGAAAAGGGTAGTGAT 59.621 45.455 0.00 0.00 0.00 3.06
2529 2733 1.777878 TGGCAAGGAAAAGGGTAGTGA 59.222 47.619 0.00 0.00 0.00 3.41
2530 2734 2.286365 TGGCAAGGAAAAGGGTAGTG 57.714 50.000 0.00 0.00 0.00 2.74
2531 2735 2.807676 CATGGCAAGGAAAAGGGTAGT 58.192 47.619 0.00 0.00 0.00 2.73
2532 2736 1.478105 GCATGGCAAGGAAAAGGGTAG 59.522 52.381 0.00 0.00 0.00 3.18
2533 2737 1.555967 GCATGGCAAGGAAAAGGGTA 58.444 50.000 0.00 0.00 0.00 3.69
2534 2738 1.535204 CGCATGGCAAGGAAAAGGGT 61.535 55.000 0.00 0.00 0.00 4.34
2535 2739 1.216178 CGCATGGCAAGGAAAAGGG 59.784 57.895 0.00 0.00 0.00 3.95
2536 2740 1.216178 CCGCATGGCAAGGAAAAGG 59.784 57.895 0.00 0.00 0.00 3.11
2537 2741 1.216178 CCCGCATGGCAAGGAAAAG 59.784 57.895 8.34 0.00 0.00 2.27
2538 2742 1.532794 ACCCGCATGGCAAGGAAAA 60.533 52.632 8.34 0.00 37.83 2.29
2614 2878 8.650490 AGTTCCATCAAACCATAACATCTTTTT 58.350 29.630 0.00 0.00 0.00 1.94
2736 3044 1.955778 TCGAACTGACCGACCAGTAAA 59.044 47.619 9.50 0.00 45.82 2.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.