Multiple sequence alignment - TraesCS5B01G547100

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G547100 chr5B 100.000 3008 0 0 1 3008 700230561 700227554 0.000000e+00 5555.0
1 TraesCS5B01G547100 chr5B 89.061 1618 127 20 665 2240 699949673 699951282 0.000000e+00 1962.0
2 TraesCS5B01G547100 chr5B 87.583 451 47 6 2558 3006 699951566 699952009 5.750000e-142 514.0
3 TraesCS5B01G547100 chr5B 76.330 752 153 20 1391 2123 685504215 685504960 2.190000e-101 379.0
4 TraesCS5B01G547100 chr5B 76.327 735 149 17 1391 2106 685322628 685321900 1.320000e-98 370.0
5 TraesCS5B01G547100 chr5B 86.774 310 39 2 2237 2544 699951209 699951518 7.980000e-91 344.0
6 TraesCS5B01G547100 chr5B 86.087 230 27 5 380 607 249556121 249555895 3.000000e-60 243.0
7 TraesCS5B01G547100 chr5B 98.020 101 1 1 2168 2267 700228360 700228260 1.110000e-39 174.0
8 TraesCS5B01G547100 chr5B 98.020 101 1 1 2203 2302 700228395 700228295 1.110000e-39 174.0
9 TraesCS5B01G547100 chr5B 78.723 188 36 3 2362 2548 703530719 703530903 4.070000e-24 122.0
10 TraesCS5B01G547100 chr5B 96.970 66 1 1 2168 2232 700228325 700228260 3.170000e-20 110.0
11 TraesCS5B01G547100 chr5B 96.970 66 1 1 2238 2302 700228395 700228330 3.170000e-20 110.0
12 TraesCS5B01G547100 chr5D 89.815 1620 115 25 659 2239 552034011 552032403 0.000000e+00 2032.0
13 TraesCS5B01G547100 chr5D 87.724 1450 137 13 804 2240 551989372 551987951 0.000000e+00 1653.0
14 TraesCS5B01G547100 chr5D 86.882 465 50 6 2543 3006 552032129 552031675 7.440000e-141 510.0
15 TraesCS5B01G547100 chr5D 86.522 460 51 5 2543 3001 551987678 551987229 2.080000e-136 496.0
16 TraesCS5B01G547100 chr5D 72.873 1246 262 50 898 2111 543503746 543502545 2.850000e-95 359.0
17 TraesCS5B01G547100 chr5D 86.129 310 41 2 2237 2544 552032475 552032166 1.730000e-87 333.0
18 TraesCS5B01G547100 chr5D 75.140 535 112 17 1534 2059 552443490 552442968 6.480000e-57 231.0
19 TraesCS5B01G547100 chr5D 76.503 183 42 1 2363 2544 552394375 552394193 6.860000e-17 99.0
20 TraesCS5B01G547100 chr5D 83.908 87 9 2 2463 2544 551612998 551613084 8.940000e-11 78.7
21 TraesCS5B01G547100 chr4A 88.806 1617 131 24 665 2240 616213069 616211462 0.000000e+00 1938.0
22 TraesCS5B01G547100 chr4A 87.975 1605 134 32 675 2240 616297189 616298773 0.000000e+00 1840.0
23 TraesCS5B01G547100 chr4A 86.214 1458 157 21 804 2240 616315152 616316586 0.000000e+00 1539.0
24 TraesCS5B01G547100 chr4A 90.876 833 73 3 1410 2240 616230056 616229225 0.000000e+00 1114.0
25 TraesCS5B01G547100 chr4A 88.222 450 45 5 2558 3006 616299056 616299498 5.710000e-147 531.0
26 TraesCS5B01G547100 chr4A 88.000 450 46 5 2558 3006 616211172 616210730 2.660000e-145 525.0
27 TraesCS5B01G547100 chr4A 86.774 310 39 2 2237 2544 616211535 616211226 7.980000e-91 344.0
28 TraesCS5B01G547100 chr4A 86.174 311 38 5 2237 2544 616229298 616228990 6.220000e-87 331.0
29 TraesCS5B01G547100 chr4A 85.806 310 41 3 2237 2544 616298700 616299008 2.890000e-85 326.0
30 TraesCS5B01G547100 chr4A 75.253 691 147 13 1391 2060 632939768 632940455 1.050000e-79 307.0
31 TraesCS5B01G547100 chr3A 98.339 301 4 1 1 300 580560318 580560618 7.390000e-146 527.0
32 TraesCS5B01G547100 chr3A 97.705 305 6 1 1 305 492035182 492035485 9.550000e-145 523.0
33 TraesCS5B01G547100 chr3A 97.377 305 6 1 1 303 431863561 431863257 4.450000e-143 518.0
34 TraesCS5B01G547100 chr7B 98.007 301 5 1 1 300 246018587 246018887 3.440000e-144 521.0
35 TraesCS5B01G547100 chr6A 98.007 301 5 1 1 300 8202788 8202488 3.440000e-144 521.0
36 TraesCS5B01G547100 chr2B 98.007 301 5 1 1 300 676743125 676743425 3.440000e-144 521.0
37 TraesCS5B01G547100 chr2B 80.934 257 34 6 370 613 756671760 756671506 3.960000e-44 189.0
38 TraesCS5B01G547100 chr2B 80.242 248 45 4 367 613 769955319 769955563 1.840000e-42 183.0
39 TraesCS5B01G547100 chr3B 97.386 306 6 1 1 304 543585997 543586302 1.240000e-143 520.0
40 TraesCS5B01G547100 chr3B 96.226 318 8 2 1 317 704288894 704288580 4.450000e-143 518.0
41 TraesCS5B01G547100 chr2A 97.087 309 8 1 1 308 25350894 25350586 1.240000e-143 520.0
42 TraesCS5B01G547100 chr2D 85.657 251 23 5 370 613 118469975 118470219 4.980000e-63 252.0
43 TraesCS5B01G547100 chr7A 86.026 229 31 1 370 598 79554941 79555168 8.330000e-61 244.0
44 TraesCS5B01G547100 chr7A 82.479 234 31 3 370 598 194461642 194461414 2.370000e-46 196.0
45 TraesCS5B01G547100 chr7A 80.755 265 33 9 370 617 663287902 663287639 1.100000e-44 191.0
46 TraesCS5B01G547100 chr4B 84.836 244 22 5 380 613 16879524 16879286 6.480000e-57 231.0
47 TraesCS5B01G547100 chr7D 82.008 239 42 1 374 612 386401542 386401305 5.080000e-48 202.0
48 TraesCS5B01G547100 chr1B 78.682 258 50 5 370 624 269286274 269286019 1.850000e-37 167.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G547100 chr5B 700227554 700230561 3007 True 1224.600000 5555 97.996000 1 3008 5 chr5B.!!$R3 3007
1 TraesCS5B01G547100 chr5B 699949673 699952009 2336 False 940.000000 1962 87.806000 665 3006 3 chr5B.!!$F3 2341
2 TraesCS5B01G547100 chr5B 685504215 685504960 745 False 379.000000 379 76.330000 1391 2123 1 chr5B.!!$F1 732
3 TraesCS5B01G547100 chr5B 685321900 685322628 728 True 370.000000 370 76.327000 1391 2106 1 chr5B.!!$R2 715
4 TraesCS5B01G547100 chr5D 551987229 551989372 2143 True 1074.500000 1653 87.123000 804 3001 2 chr5D.!!$R4 2197
5 TraesCS5B01G547100 chr5D 552031675 552034011 2336 True 958.333333 2032 87.608667 659 3006 3 chr5D.!!$R5 2347
6 TraesCS5B01G547100 chr5D 543502545 543503746 1201 True 359.000000 359 72.873000 898 2111 1 chr5D.!!$R1 1213
7 TraesCS5B01G547100 chr5D 552442968 552443490 522 True 231.000000 231 75.140000 1534 2059 1 chr5D.!!$R3 525
8 TraesCS5B01G547100 chr4A 616315152 616316586 1434 False 1539.000000 1539 86.214000 804 2240 1 chr4A.!!$F1 1436
9 TraesCS5B01G547100 chr4A 616210730 616213069 2339 True 935.666667 1938 87.860000 665 3006 3 chr4A.!!$R1 2341
10 TraesCS5B01G547100 chr4A 616297189 616299498 2309 False 899.000000 1840 87.334333 675 3006 3 chr4A.!!$F3 2331
11 TraesCS5B01G547100 chr4A 616228990 616230056 1066 True 722.500000 1114 88.525000 1410 2544 2 chr4A.!!$R2 1134
12 TraesCS5B01G547100 chr4A 632939768 632940455 687 False 307.000000 307 75.253000 1391 2060 1 chr4A.!!$F2 669

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
507 508 0.031178 GGCGGGCTTTTAGCATGATG 59.969 55.0 0.00 0.0 44.75 3.07 F
508 509 0.031178 GCGGGCTTTTAGCATGATGG 59.969 55.0 0.00 0.0 44.75 3.51 F
630 631 0.107897 ATGGTTTGTAGCATCCGCGA 60.108 50.0 8.23 0.0 45.49 5.87 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1832 1957 0.175760 ACGCATAGTCCATGACGCTT 59.824 50.0 0.00 0.00 37.55 4.68 R
1912 2037 0.393537 CTGGCCTCCACAGATCCAAC 60.394 60.0 3.32 0.00 38.20 3.77 R
2250 2379 0.670162 GCTGGAAGTTTGCTTGAGCA 59.330 50.0 0.68 0.68 43.28 4.26 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 2.124860 GGCACGGCCCGATTAACT 60.125 61.111 11.71 0.00 44.06 2.24
27 28 1.747745 GGCACGGCCCGATTAACTT 60.748 57.895 11.71 0.00 44.06 2.66
28 29 1.310216 GGCACGGCCCGATTAACTTT 61.310 55.000 11.71 0.00 44.06 2.66
29 30 0.524414 GCACGGCCCGATTAACTTTT 59.476 50.000 11.71 0.00 0.00 2.27
30 31 1.068125 GCACGGCCCGATTAACTTTTT 60.068 47.619 11.71 0.00 0.00 1.94
62 63 8.644374 TTTTATGTATCCTAATATGGGCCAAC 57.356 34.615 11.89 0.35 0.00 3.77
63 64 5.858876 ATGTATCCTAATATGGGCCAACA 57.141 39.130 11.89 7.42 0.00 3.33
64 65 5.241403 TGTATCCTAATATGGGCCAACAG 57.759 43.478 11.89 5.14 0.00 3.16
65 66 3.814504 ATCCTAATATGGGCCAACAGG 57.185 47.619 11.89 14.64 0.00 4.00
66 67 2.498441 TCCTAATATGGGCCAACAGGT 58.502 47.619 11.89 0.00 0.00 4.00
67 68 3.671079 TCCTAATATGGGCCAACAGGTA 58.329 45.455 11.89 0.00 0.00 3.08
68 69 4.048600 TCCTAATATGGGCCAACAGGTAA 58.951 43.478 11.89 0.00 0.00 2.85
69 70 4.479056 TCCTAATATGGGCCAACAGGTAAA 59.521 41.667 11.89 0.00 0.00 2.01
70 71 5.044030 TCCTAATATGGGCCAACAGGTAAAA 60.044 40.000 11.89 0.00 0.00 1.52
71 72 5.659079 CCTAATATGGGCCAACAGGTAAAAA 59.341 40.000 11.89 0.00 0.00 1.94
72 73 6.326323 CCTAATATGGGCCAACAGGTAAAAAT 59.674 38.462 11.89 0.00 0.00 1.82
73 74 7.507616 CCTAATATGGGCCAACAGGTAAAAATA 59.492 37.037 11.89 0.00 0.00 1.40
74 75 6.976934 ATATGGGCCAACAGGTAAAAATAG 57.023 37.500 11.89 0.00 0.00 1.73
75 76 3.436243 TGGGCCAACAGGTAAAAATAGG 58.564 45.455 2.13 0.00 0.00 2.57
76 77 2.167693 GGGCCAACAGGTAAAAATAGGC 59.832 50.000 4.39 0.00 40.08 3.93
77 78 3.096852 GGCCAACAGGTAAAAATAGGCT 58.903 45.455 0.00 0.00 40.61 4.58
78 79 4.274978 GGCCAACAGGTAAAAATAGGCTA 58.725 43.478 0.00 0.00 40.61 3.93
79 80 4.707934 GGCCAACAGGTAAAAATAGGCTAA 59.292 41.667 0.00 0.00 40.61 3.09
80 81 5.186215 GGCCAACAGGTAAAAATAGGCTAAA 59.814 40.000 0.00 0.00 40.61 1.85
81 82 6.295405 GGCCAACAGGTAAAAATAGGCTAAAA 60.295 38.462 0.00 0.00 40.61 1.52
82 83 7.156000 GCCAACAGGTAAAAATAGGCTAAAAA 58.844 34.615 0.00 0.00 37.89 1.94
83 84 7.117236 GCCAACAGGTAAAAATAGGCTAAAAAC 59.883 37.037 0.00 0.00 37.89 2.43
84 85 7.327518 CCAACAGGTAAAAATAGGCTAAAAACG 59.672 37.037 0.00 0.00 0.00 3.60
85 86 6.384224 ACAGGTAAAAATAGGCTAAAAACGC 58.616 36.000 0.00 0.00 0.00 4.84
86 87 6.208007 ACAGGTAAAAATAGGCTAAAAACGCT 59.792 34.615 0.00 0.00 0.00 5.07
87 88 6.745907 CAGGTAAAAATAGGCTAAAAACGCTC 59.254 38.462 0.00 0.00 0.00 5.03
88 89 6.431852 AGGTAAAAATAGGCTAAAAACGCTCA 59.568 34.615 0.00 0.00 0.00 4.26
89 90 6.745907 GGTAAAAATAGGCTAAAAACGCTCAG 59.254 38.462 0.00 0.00 0.00 3.35
90 91 5.959618 AAAATAGGCTAAAAACGCTCAGT 57.040 34.783 0.00 0.00 0.00 3.41
91 92 4.946784 AATAGGCTAAAAACGCTCAGTG 57.053 40.909 0.00 0.00 0.00 3.66
92 93 0.875059 AGGCTAAAAACGCTCAGTGC 59.125 50.000 0.00 0.00 38.57 4.40
102 103 3.611433 GCTCAGTGCGCAAAATAGG 57.389 52.632 14.00 1.46 0.00 2.57
103 104 1.086696 GCTCAGTGCGCAAAATAGGA 58.913 50.000 14.00 2.55 0.00 2.94
104 105 1.063174 GCTCAGTGCGCAAAATAGGAG 59.937 52.381 14.00 13.65 0.00 3.69
105 106 1.667724 CTCAGTGCGCAAAATAGGAGG 59.332 52.381 14.00 0.00 0.00 4.30
106 107 1.003118 TCAGTGCGCAAAATAGGAGGT 59.997 47.619 14.00 0.00 0.00 3.85
107 108 2.235155 TCAGTGCGCAAAATAGGAGGTA 59.765 45.455 14.00 0.00 0.00 3.08
108 109 2.609459 CAGTGCGCAAAATAGGAGGTAG 59.391 50.000 14.00 0.00 0.00 3.18
109 110 2.500098 AGTGCGCAAAATAGGAGGTAGA 59.500 45.455 14.00 0.00 0.00 2.59
110 111 3.134804 AGTGCGCAAAATAGGAGGTAGAT 59.865 43.478 14.00 0.00 0.00 1.98
111 112 3.877508 GTGCGCAAAATAGGAGGTAGATT 59.122 43.478 14.00 0.00 0.00 2.40
112 113 5.054477 GTGCGCAAAATAGGAGGTAGATTA 58.946 41.667 14.00 0.00 0.00 1.75
113 114 5.177696 GTGCGCAAAATAGGAGGTAGATTAG 59.822 44.000 14.00 0.00 0.00 1.73
114 115 5.163343 TGCGCAAAATAGGAGGTAGATTAGT 60.163 40.000 8.16 0.00 0.00 2.24
115 116 5.177696 GCGCAAAATAGGAGGTAGATTAGTG 59.822 44.000 0.30 0.00 0.00 2.74
116 117 5.696724 CGCAAAATAGGAGGTAGATTAGTGG 59.303 44.000 0.00 0.00 0.00 4.00
117 118 5.998363 GCAAAATAGGAGGTAGATTAGTGGG 59.002 44.000 0.00 0.00 0.00 4.61
118 119 5.827326 AAATAGGAGGTAGATTAGTGGGC 57.173 43.478 0.00 0.00 0.00 5.36
119 120 2.104669 AGGAGGTAGATTAGTGGGCC 57.895 55.000 0.00 0.00 0.00 5.80
120 121 1.581149 AGGAGGTAGATTAGTGGGCCT 59.419 52.381 4.53 0.00 0.00 5.19
121 122 1.694696 GGAGGTAGATTAGTGGGCCTG 59.305 57.143 4.53 0.00 0.00 4.85
122 123 2.679082 GAGGTAGATTAGTGGGCCTGA 58.321 52.381 4.53 0.00 0.00 3.86
123 124 2.365941 GAGGTAGATTAGTGGGCCTGAC 59.634 54.545 4.53 0.00 0.00 3.51
124 125 1.068741 GGTAGATTAGTGGGCCTGACG 59.931 57.143 4.53 0.00 0.00 4.35
125 126 1.755380 GTAGATTAGTGGGCCTGACGT 59.245 52.381 4.53 0.00 0.00 4.34
126 127 0.537188 AGATTAGTGGGCCTGACGTG 59.463 55.000 4.53 0.00 0.00 4.49
127 128 1.078426 ATTAGTGGGCCTGACGTGC 60.078 57.895 4.53 0.00 0.00 5.34
150 151 4.643387 GGCCGGCCCGATTAGCAT 62.643 66.667 36.64 0.00 0.00 3.79
151 152 2.345991 GCCGGCCCGATTAGCATA 59.654 61.111 18.11 0.00 0.00 3.14
152 153 2.033194 GCCGGCCCGATTAGCATAC 61.033 63.158 18.11 0.00 0.00 2.39
153 154 1.736645 CCGGCCCGATTAGCATACG 60.737 63.158 3.71 0.00 0.00 3.06
154 155 1.736645 CGGCCCGATTAGCATACGG 60.737 63.158 0.00 0.00 45.24 4.02
157 158 4.278956 CCGATTAGCATACGGGCC 57.721 61.111 0.00 0.00 42.48 5.80
158 159 1.736645 CCGATTAGCATACGGGCCG 60.737 63.158 27.06 27.06 42.48 6.13
159 160 1.006571 CGATTAGCATACGGGCCGT 60.007 57.895 35.91 35.91 44.35 5.68
160 161 1.282248 CGATTAGCATACGGGCCGTG 61.282 60.000 39.80 25.77 41.39 4.94
161 162 1.566018 GATTAGCATACGGGCCGTGC 61.566 60.000 39.80 33.49 41.39 5.34
213 214 3.610637 GGCACGGCCCGTATAATAA 57.389 52.632 9.25 0.00 44.06 1.40
214 215 2.103537 GGCACGGCCCGTATAATAAT 57.896 50.000 9.25 0.00 44.06 1.28
215 216 2.004733 GGCACGGCCCGTATAATAATC 58.995 52.381 9.25 0.00 44.06 1.75
216 217 1.657094 GCACGGCCCGTATAATAATCG 59.343 52.381 9.25 0.00 38.32 3.34
217 218 2.927871 GCACGGCCCGTATAATAATCGT 60.928 50.000 9.25 0.00 38.32 3.73
218 219 2.664568 CACGGCCCGTATAATAATCGTG 59.335 50.000 9.25 0.00 38.32 4.35
219 220 1.657094 CGGCCCGTATAATAATCGTGC 59.343 52.381 0.00 0.00 0.00 5.34
220 221 2.004733 GGCCCGTATAATAATCGTGCC 58.995 52.381 0.00 0.00 40.23 5.01
221 222 2.354403 GGCCCGTATAATAATCGTGCCT 60.354 50.000 0.00 0.00 42.74 4.75
222 223 3.119029 GGCCCGTATAATAATCGTGCCTA 60.119 47.826 0.00 0.00 42.74 3.93
223 224 4.110482 GCCCGTATAATAATCGTGCCTAG 58.890 47.826 0.00 0.00 0.00 3.02
224 225 4.679662 CCCGTATAATAATCGTGCCTAGG 58.320 47.826 3.67 3.67 0.00 3.02
225 226 4.110482 CCGTATAATAATCGTGCCTAGGC 58.890 47.826 27.71 27.71 42.35 3.93
226 227 3.789756 CGTATAATAATCGTGCCTAGGCG 59.210 47.826 28.28 15.51 45.51 5.52
227 228 2.736144 TAATAATCGTGCCTAGGCGG 57.264 50.000 28.28 21.97 45.51 6.13
228 229 0.034896 AATAATCGTGCCTAGGCGGG 59.965 55.000 28.28 21.60 45.51 6.13
254 255 3.720494 TGCCAGGCACGATTAGGA 58.280 55.556 11.22 0.00 31.71 2.94
255 256 2.220953 TGCCAGGCACGATTAGGAT 58.779 52.632 11.22 0.00 31.71 3.24
256 257 0.179048 TGCCAGGCACGATTAGGATG 60.179 55.000 11.22 0.00 31.71 3.51
257 258 0.886490 GCCAGGCACGATTAGGATGG 60.886 60.000 6.55 0.00 0.00 3.51
258 259 0.250467 CCAGGCACGATTAGGATGGG 60.250 60.000 0.00 0.00 0.00 4.00
259 260 0.886490 CAGGCACGATTAGGATGGGC 60.886 60.000 0.00 0.00 0.00 5.36
260 261 1.600916 GGCACGATTAGGATGGGCC 60.601 63.158 0.00 0.00 0.00 5.80
261 262 1.961277 GCACGATTAGGATGGGCCG 60.961 63.158 0.00 0.00 43.43 6.13
262 263 1.445942 CACGATTAGGATGGGCCGT 59.554 57.895 0.00 0.00 43.43 5.68
263 264 0.880278 CACGATTAGGATGGGCCGTG 60.880 60.000 1.02 0.00 43.43 4.94
264 265 1.961277 CGATTAGGATGGGCCGTGC 60.961 63.158 9.57 9.57 43.43 5.34
300 301 3.513225 CCCGTTTGGCCAGCTATG 58.487 61.111 5.11 0.95 0.00 2.23
316 317 2.433491 TGGTACACGCCACGCATC 60.433 61.111 0.00 0.00 32.81 3.91
317 318 2.125673 GGTACACGCCACGCATCT 60.126 61.111 0.00 0.00 0.00 2.90
318 319 1.140161 GGTACACGCCACGCATCTA 59.860 57.895 0.00 0.00 0.00 1.98
319 320 1.143969 GGTACACGCCACGCATCTAC 61.144 60.000 0.00 0.00 0.00 2.59
320 321 0.457166 GTACACGCCACGCATCTACA 60.457 55.000 0.00 0.00 0.00 2.74
321 322 0.179148 TACACGCCACGCATCTACAG 60.179 55.000 0.00 0.00 0.00 2.74
322 323 2.509336 ACGCCACGCATCTACAGC 60.509 61.111 0.00 0.00 0.00 4.40
323 324 3.264897 CGCCACGCATCTACAGCC 61.265 66.667 0.00 0.00 0.00 4.85
324 325 3.264897 GCCACGCATCTACAGCCG 61.265 66.667 0.00 0.00 0.00 5.52
325 326 2.586079 CCACGCATCTACAGCCGG 60.586 66.667 0.00 0.00 0.00 6.13
326 327 3.264897 CACGCATCTACAGCCGGC 61.265 66.667 21.89 21.89 0.00 6.13
328 329 4.873129 CGCATCTACAGCCGGCGT 62.873 66.667 23.20 23.39 42.51 5.68
329 330 2.415843 GCATCTACAGCCGGCGTA 59.584 61.111 23.20 23.25 0.00 4.42
330 331 1.661821 GCATCTACAGCCGGCGTAG 60.662 63.158 33.62 33.62 38.15 3.51
331 332 1.007271 CATCTACAGCCGGCGTAGG 60.007 63.158 35.83 25.62 37.52 3.18
342 343 4.403976 GCGTAGGCAGCTGTACTC 57.596 61.111 16.64 2.10 39.62 2.59
343 344 1.511305 GCGTAGGCAGCTGTACTCA 59.489 57.895 16.64 1.42 39.62 3.41
344 345 0.802607 GCGTAGGCAGCTGTACTCAC 60.803 60.000 16.64 11.28 39.62 3.51
345 346 0.811915 CGTAGGCAGCTGTACTCACT 59.188 55.000 16.64 6.95 0.00 3.41
346 347 1.202582 CGTAGGCAGCTGTACTCACTT 59.797 52.381 16.64 0.00 0.00 3.16
347 348 2.352814 CGTAGGCAGCTGTACTCACTTT 60.353 50.000 16.64 0.00 0.00 2.66
348 349 2.175878 AGGCAGCTGTACTCACTTTG 57.824 50.000 16.64 0.00 0.00 2.77
349 350 1.417890 AGGCAGCTGTACTCACTTTGT 59.582 47.619 16.64 0.00 0.00 2.83
350 351 2.158755 AGGCAGCTGTACTCACTTTGTT 60.159 45.455 16.64 0.00 0.00 2.83
351 352 2.618709 GGCAGCTGTACTCACTTTGTTT 59.381 45.455 16.64 0.00 0.00 2.83
352 353 3.813166 GGCAGCTGTACTCACTTTGTTTA 59.187 43.478 16.64 0.00 0.00 2.01
353 354 4.319549 GGCAGCTGTACTCACTTTGTTTAC 60.320 45.833 16.64 0.00 0.00 2.01
354 355 4.319549 GCAGCTGTACTCACTTTGTTTACC 60.320 45.833 16.64 0.00 0.00 2.85
355 356 5.057149 CAGCTGTACTCACTTTGTTTACCT 58.943 41.667 5.25 0.00 0.00 3.08
356 357 5.050091 CAGCTGTACTCACTTTGTTTACCTG 60.050 44.000 5.25 0.00 0.00 4.00
357 358 4.213482 GCTGTACTCACTTTGTTTACCTGG 59.787 45.833 0.00 0.00 0.00 4.45
358 359 4.131596 TGTACTCACTTTGTTTACCTGGC 58.868 43.478 0.00 0.00 0.00 4.85
359 360 2.583143 ACTCACTTTGTTTACCTGGCC 58.417 47.619 0.00 0.00 0.00 5.36
360 361 2.092103 ACTCACTTTGTTTACCTGGCCA 60.092 45.455 4.71 4.71 0.00 5.36
361 362 3.157087 CTCACTTTGTTTACCTGGCCAT 58.843 45.455 5.51 0.00 0.00 4.40
362 363 2.890311 TCACTTTGTTTACCTGGCCATG 59.110 45.455 5.51 6.06 0.00 3.66
363 364 2.029110 CACTTTGTTTACCTGGCCATGG 60.029 50.000 5.51 13.05 0.00 3.66
364 365 1.550072 CTTTGTTTACCTGGCCATGGG 59.450 52.381 20.97 16.10 0.00 4.00
381 382 4.162690 GCAGACCGGCCCGATCTT 62.163 66.667 3.71 0.00 0.00 2.40
382 383 2.202932 CAGACCGGCCCGATCTTG 60.203 66.667 3.71 0.00 0.00 3.02
383 384 2.683933 AGACCGGCCCGATCTTGT 60.684 61.111 3.71 0.00 0.00 3.16
384 385 2.202892 GACCGGCCCGATCTTGTC 60.203 66.667 3.71 0.00 0.00 3.18
385 386 3.735037 GACCGGCCCGATCTTGTCC 62.735 68.421 3.71 0.00 0.00 4.02
386 387 3.781307 CCGGCCCGATCTTGTCCA 61.781 66.667 3.71 0.00 0.00 4.02
387 388 2.511600 CGGCCCGATCTTGTCCAC 60.512 66.667 0.00 0.00 0.00 4.02
388 389 2.511600 GGCCCGATCTTGTCCACG 60.512 66.667 0.00 0.00 0.00 4.94
389 390 2.511600 GCCCGATCTTGTCCACGG 60.512 66.667 0.00 0.00 44.16 4.94
391 392 2.511600 CCGATCTTGTCCACGGGC 60.512 66.667 0.00 0.00 41.41 6.13
392 393 2.511600 CGATCTTGTCCACGGGCC 60.512 66.667 0.00 0.00 0.00 5.80
393 394 2.511600 GATCTTGTCCACGGGCCG 60.512 66.667 27.06 27.06 0.00 6.13
394 395 4.096003 ATCTTGTCCACGGGCCGG 62.096 66.667 31.78 18.68 0.00 6.13
415 416 1.874231 GCTCGGGCCTAGATTTTAAGC 59.126 52.381 9.63 0.00 0.00 3.09
416 417 2.495084 CTCGGGCCTAGATTTTAAGCC 58.505 52.381 0.84 0.00 43.09 4.35
419 420 1.605753 GGCCTAGATTTTAAGCCCGG 58.394 55.000 0.00 0.00 37.66 5.73
420 421 0.952280 GCCTAGATTTTAAGCCCGGC 59.048 55.000 0.00 0.00 0.00 6.13
421 422 1.226746 CCTAGATTTTAAGCCCGGCG 58.773 55.000 3.05 0.00 0.00 6.46
422 423 1.226746 CTAGATTTTAAGCCCGGCGG 58.773 55.000 21.46 21.46 0.00 6.13
454 455 4.579127 GCTTGGGCCCATCGTATT 57.421 55.556 29.23 0.00 0.00 1.89
455 456 2.331265 GCTTGGGCCCATCGTATTC 58.669 57.895 29.23 5.97 0.00 1.75
456 457 1.507141 GCTTGGGCCCATCGTATTCG 61.507 60.000 29.23 7.82 38.55 3.34
457 458 1.507141 CTTGGGCCCATCGTATTCGC 61.507 60.000 29.23 0.00 36.96 4.70
458 459 2.110213 GGGCCCATCGTATTCGCA 59.890 61.111 19.95 0.00 36.96 5.10
459 460 2.251642 GGGCCCATCGTATTCGCAC 61.252 63.158 19.95 0.00 36.96 5.34
460 461 2.594962 GGCCCATCGTATTCGCACG 61.595 63.158 0.00 0.00 43.28 5.34
461 462 1.881252 GCCCATCGTATTCGCACGT 60.881 57.895 4.40 0.00 42.51 4.49
462 463 1.426041 GCCCATCGTATTCGCACGTT 61.426 55.000 0.00 0.00 42.51 3.99
463 464 1.842720 CCCATCGTATTCGCACGTTA 58.157 50.000 0.00 0.00 42.51 3.18
464 465 2.195096 CCCATCGTATTCGCACGTTAA 58.805 47.619 0.00 0.00 42.51 2.01
465 466 2.034339 CCCATCGTATTCGCACGTTAAC 60.034 50.000 0.00 0.00 42.51 2.01
466 467 2.346012 CCATCGTATTCGCACGTTAACG 60.346 50.000 25.68 25.68 42.51 3.18
467 468 2.239751 TCGTATTCGCACGTTAACGA 57.760 45.000 33.06 11.87 42.51 3.85
472 473 1.411394 TTCGCACGTTAACGAAGAGG 58.589 50.000 33.06 18.43 42.85 3.69
473 474 1.005294 TCGCACGTTAACGAAGAGGC 61.005 55.000 33.06 23.23 43.02 4.70
474 475 1.785951 GCACGTTAACGAAGAGGCC 59.214 57.895 33.06 0.00 43.02 5.19
475 476 1.632948 GCACGTTAACGAAGAGGCCC 61.633 60.000 33.06 8.98 43.02 5.80
476 477 1.080298 ACGTTAACGAAGAGGCCCG 60.080 57.895 33.06 4.10 43.02 6.13
477 478 1.808390 CGTTAACGAAGAGGCCCGG 60.808 63.158 23.35 0.00 43.02 5.73
478 479 2.104859 GTTAACGAAGAGGCCCGGC 61.105 63.158 0.00 0.00 0.00 6.13
498 499 4.717313 GAGGTCCGGCGGGCTTTT 62.717 66.667 31.34 16.37 0.00 2.27
499 500 3.319441 GAGGTCCGGCGGGCTTTTA 62.319 63.158 31.34 4.18 0.00 1.52
500 501 2.822701 GGTCCGGCGGGCTTTTAG 60.823 66.667 31.34 0.00 0.00 1.85
501 502 3.506096 GTCCGGCGGGCTTTTAGC 61.506 66.667 25.70 1.27 41.46 3.09
502 503 4.023234 TCCGGCGGGCTTTTAGCA 62.023 61.111 27.98 0.00 44.75 3.49
503 504 2.828549 CCGGCGGGCTTTTAGCAT 60.829 61.111 20.56 0.00 44.75 3.79
504 505 2.408835 CGGCGGGCTTTTAGCATG 59.591 61.111 0.00 0.00 44.75 4.06
505 506 2.112198 CGGCGGGCTTTTAGCATGA 61.112 57.895 0.00 0.00 44.75 3.07
506 507 1.447317 CGGCGGGCTTTTAGCATGAT 61.447 55.000 0.00 0.00 44.75 2.45
507 508 0.031178 GGCGGGCTTTTAGCATGATG 59.969 55.000 0.00 0.00 44.75 3.07
508 509 0.031178 GCGGGCTTTTAGCATGATGG 59.969 55.000 0.00 0.00 44.75 3.51
509 510 0.670162 CGGGCTTTTAGCATGATGGG 59.330 55.000 0.00 0.00 44.75 4.00
510 511 1.780503 GGGCTTTTAGCATGATGGGT 58.219 50.000 0.00 0.00 44.75 4.51
511 512 2.110578 GGGCTTTTAGCATGATGGGTT 58.889 47.619 0.00 0.00 44.75 4.11
512 513 2.159057 GGGCTTTTAGCATGATGGGTTG 60.159 50.000 0.00 0.00 44.75 3.77
513 514 2.159057 GGCTTTTAGCATGATGGGTTGG 60.159 50.000 0.00 0.00 44.75 3.77
514 515 2.159057 GCTTTTAGCATGATGGGTTGGG 60.159 50.000 0.00 0.00 41.89 4.12
515 516 2.917713 TTTAGCATGATGGGTTGGGT 57.082 45.000 0.00 0.00 0.00 4.51
516 517 2.917713 TTAGCATGATGGGTTGGGTT 57.082 45.000 0.00 0.00 0.00 4.11
517 518 2.917713 TAGCATGATGGGTTGGGTTT 57.082 45.000 0.00 0.00 0.00 3.27
518 519 1.269012 AGCATGATGGGTTGGGTTTG 58.731 50.000 0.00 0.00 0.00 2.93
519 520 0.249955 GCATGATGGGTTGGGTTTGG 59.750 55.000 0.00 0.00 0.00 3.28
520 521 0.903942 CATGATGGGTTGGGTTTGGG 59.096 55.000 0.00 0.00 0.00 4.12
521 522 0.909133 ATGATGGGTTGGGTTTGGGC 60.909 55.000 0.00 0.00 0.00 5.36
522 523 2.203922 ATGGGTTGGGTTTGGGCC 60.204 61.111 0.00 0.00 0.00 5.80
523 524 2.746947 GATGGGTTGGGTTTGGGCCT 62.747 60.000 4.53 0.00 0.00 5.19
524 525 2.922503 GGGTTGGGTTTGGGCCTG 60.923 66.667 4.53 0.00 0.00 4.85
525 526 2.200092 GGTTGGGTTTGGGCCTGA 59.800 61.111 4.53 0.00 0.00 3.86
526 527 1.229177 GGTTGGGTTTGGGCCTGAT 60.229 57.895 4.53 0.00 0.00 2.90
527 528 0.835971 GGTTGGGTTTGGGCCTGATT 60.836 55.000 4.53 0.00 0.00 2.57
528 529 1.055849 GTTGGGTTTGGGCCTGATTT 58.944 50.000 4.53 0.00 0.00 2.17
529 530 1.419762 GTTGGGTTTGGGCCTGATTTT 59.580 47.619 4.53 0.00 0.00 1.82
530 531 1.813102 TGGGTTTGGGCCTGATTTTT 58.187 45.000 4.53 0.00 0.00 1.94
531 532 2.977808 TGGGTTTGGGCCTGATTTTTA 58.022 42.857 4.53 0.00 0.00 1.52
532 533 2.903135 TGGGTTTGGGCCTGATTTTTAG 59.097 45.455 4.53 0.00 0.00 1.85
533 534 2.236146 GGGTTTGGGCCTGATTTTTAGG 59.764 50.000 4.53 0.00 38.39 2.69
541 542 1.956477 CCTGATTTTTAGGCCCGATGG 59.044 52.381 0.00 0.00 0.00 3.51
565 566 4.016706 CGGACTCGGGCTTGGGTT 62.017 66.667 0.00 0.00 0.00 4.11
566 567 2.434774 GGACTCGGGCTTGGGTTT 59.565 61.111 0.00 0.00 0.00 3.27
567 568 1.228459 GGACTCGGGCTTGGGTTTT 60.228 57.895 0.00 0.00 0.00 2.43
568 569 0.826256 GGACTCGGGCTTGGGTTTTT 60.826 55.000 0.00 0.00 0.00 1.94
586 587 3.940209 TTTTGCATCAGGCTTTGGTAG 57.060 42.857 0.00 0.00 45.15 3.18
587 588 1.838112 TTGCATCAGGCTTTGGTAGG 58.162 50.000 0.00 0.00 45.15 3.18
609 610 4.864334 GCCCGACAGATGGCCAGG 62.864 72.222 13.05 6.01 41.97 4.45
610 611 3.402681 CCCGACAGATGGCCAGGT 61.403 66.667 13.05 9.65 0.00 4.00
611 612 2.063979 CCCGACAGATGGCCAGGTA 61.064 63.158 13.05 0.00 0.00 3.08
612 613 1.410850 CCCGACAGATGGCCAGGTAT 61.411 60.000 13.05 0.00 0.00 2.73
613 614 0.250038 CCGACAGATGGCCAGGTATG 60.250 60.000 13.05 5.35 0.00 2.39
626 627 3.214328 CCAGGTATGGTTTGTAGCATCC 58.786 50.000 0.00 0.00 41.37 3.51
627 628 2.872245 CAGGTATGGTTTGTAGCATCCG 59.128 50.000 0.00 0.00 41.37 4.18
628 629 1.602377 GGTATGGTTTGTAGCATCCGC 59.398 52.381 0.00 0.00 41.37 5.54
629 630 1.260561 GTATGGTTTGTAGCATCCGCG 59.739 52.381 0.00 0.00 45.49 6.46
630 631 0.107897 ATGGTTTGTAGCATCCGCGA 60.108 50.000 8.23 0.00 45.49 5.87
631 632 0.739462 TGGTTTGTAGCATCCGCGAG 60.739 55.000 8.23 0.00 45.49 5.03
632 633 0.459585 GGTTTGTAGCATCCGCGAGA 60.460 55.000 8.23 3.13 45.49 4.04
633 634 1.571919 GTTTGTAGCATCCGCGAGAT 58.428 50.000 8.23 5.89 45.49 2.75
634 635 1.933853 GTTTGTAGCATCCGCGAGATT 59.066 47.619 8.23 0.00 45.49 2.40
635 636 3.120792 GTTTGTAGCATCCGCGAGATTA 58.879 45.455 8.23 0.00 45.49 1.75
636 637 2.706555 TGTAGCATCCGCGAGATTAG 57.293 50.000 8.23 0.00 45.49 1.73
637 638 1.954382 TGTAGCATCCGCGAGATTAGT 59.046 47.619 8.23 0.00 45.49 2.24
638 639 3.143728 TGTAGCATCCGCGAGATTAGTA 58.856 45.455 8.23 0.00 45.49 1.82
639 640 2.999507 AGCATCCGCGAGATTAGTAG 57.000 50.000 8.23 0.00 45.49 2.57
640 641 2.231529 AGCATCCGCGAGATTAGTAGT 58.768 47.619 8.23 0.00 45.49 2.73
641 642 2.623889 AGCATCCGCGAGATTAGTAGTT 59.376 45.455 8.23 0.00 45.49 2.24
642 643 3.068307 AGCATCCGCGAGATTAGTAGTTT 59.932 43.478 8.23 0.00 45.49 2.66
643 644 3.182572 GCATCCGCGAGATTAGTAGTTTG 59.817 47.826 8.23 0.00 30.59 2.93
644 645 4.607955 CATCCGCGAGATTAGTAGTTTGA 58.392 43.478 8.23 0.00 30.59 2.69
645 646 4.913335 TCCGCGAGATTAGTAGTTTGAT 57.087 40.909 8.23 0.00 0.00 2.57
646 647 4.856664 TCCGCGAGATTAGTAGTTTGATC 58.143 43.478 8.23 0.00 0.00 2.92
647 648 4.579340 TCCGCGAGATTAGTAGTTTGATCT 59.421 41.667 8.23 0.00 0.00 2.75
648 649 5.761726 TCCGCGAGATTAGTAGTTTGATCTA 59.238 40.000 8.23 0.00 0.00 1.98
649 650 6.261603 TCCGCGAGATTAGTAGTTTGATCTAA 59.738 38.462 8.23 0.00 0.00 2.10
650 651 7.040617 TCCGCGAGATTAGTAGTTTGATCTAAT 60.041 37.037 8.23 0.00 37.17 1.73
651 652 7.595502 CCGCGAGATTAGTAGTTTGATCTAATT 59.404 37.037 8.23 0.00 35.42 1.40
652 653 8.969267 CGCGAGATTAGTAGTTTGATCTAATTT 58.031 33.333 0.00 0.00 35.42 1.82
711 713 1.422950 CGTAATACACCGGGTTGGCG 61.423 60.000 6.32 0.00 43.94 5.69
716 718 2.042404 TACACCGGGTTGGCGTCTTT 62.042 55.000 6.32 0.00 43.94 2.52
734 736 4.704833 GTGGGAAGCCTCGCAGCA 62.705 66.667 1.71 0.00 44.45 4.41
746 748 3.402681 GCAGCAGGCCTACCTCCA 61.403 66.667 3.98 0.00 46.34 3.86
765 767 4.489771 GCACGGGTAGCCTGCCAT 62.490 66.667 18.86 0.00 32.02 4.40
772 774 3.096495 TAGCCTGCCATGGACCCC 61.096 66.667 18.40 0.00 0.00 4.95
773 775 3.960578 TAGCCTGCCATGGACCCCA 62.961 63.158 18.40 2.27 38.19 4.96
789 791 3.816523 GACCCCACGTGTCTTGATTTTAA 59.183 43.478 15.65 0.00 0.00 1.52
798 800 5.507315 CGTGTCTTGATTTTAACCCAAGCTT 60.507 40.000 0.00 0.00 37.71 3.74
894 916 1.205055 CCTACCCTCAAACCTCCTCC 58.795 60.000 0.00 0.00 0.00 4.30
895 917 1.205055 CTACCCTCAAACCTCCTCCC 58.795 60.000 0.00 0.00 0.00 4.30
896 918 0.253020 TACCCTCAAACCTCCTCCCC 60.253 60.000 0.00 0.00 0.00 4.81
952 981 2.594592 GCCGCCGCCCATAGAATT 60.595 61.111 0.00 0.00 0.00 2.17
959 988 1.799258 CGCCCATAGAATTGCTGCCC 61.799 60.000 0.00 0.00 0.00 5.36
992 1021 2.797792 CGAGGAGATCTTCTTTCGCCTG 60.798 54.545 4.61 0.00 42.58 4.85
1093 1133 5.542779 GCTATCGTAAGTTCCATGGATCTT 58.457 41.667 31.25 31.25 37.73 2.40
1176 1219 0.249447 CGCGCTTCATCTCCACCATA 60.249 55.000 5.56 0.00 0.00 2.74
1273 1323 3.181469 CGTTCTCCTTCGGGATAATTGGA 60.181 47.826 0.00 0.00 44.11 3.53
1324 1374 0.883370 GACGGGTCGCCAAAGAAAGT 60.883 55.000 0.00 0.00 0.00 2.66
1428 1478 3.015145 GCAGGGCCCTTCCAGGTA 61.015 66.667 26.10 0.00 36.21 3.08
1447 1497 3.200165 GGTAGTATTCTTGGGCCTTGACT 59.800 47.826 4.53 2.33 0.00 3.41
1702 1827 8.712363 GCTCTAATTGCTTATCGTTGATTGATA 58.288 33.333 0.00 0.00 0.00 2.15
1832 1957 6.436847 TCAAGACAATTGGATGCTAATGGAAA 59.563 34.615 10.83 0.00 0.00 3.13
1869 1994 2.283617 GCGTAGAGTCGTCGAACTCATA 59.716 50.000 17.31 6.29 46.65 2.15
1882 2007 4.530946 TCGAACTCATAAACCTTCTCCCTT 59.469 41.667 0.00 0.00 0.00 3.95
1905 2030 8.817100 CCTTTTCAAAATACCAACAAAAGACTC 58.183 33.333 0.00 0.00 34.25 3.36
1912 2037 3.545703 ACCAACAAAAGACTCAGACTGG 58.454 45.455 1.81 0.00 0.00 4.00
1928 2053 0.393537 CTGGTTGGATCTGTGGAGGC 60.394 60.000 0.00 0.00 0.00 4.70
1956 2081 7.172190 AGTGATATCATTTTCATAACTGCGGAG 59.828 37.037 9.02 0.85 0.00 4.63
2007 2132 6.155221 AGACACTACAATGGAAGAAGCTATGA 59.845 38.462 0.00 0.00 0.00 2.15
2061 2186 4.253685 ACATGAGTTTCTACAATCCACCG 58.746 43.478 0.00 0.00 0.00 4.94
2199 2328 1.499502 GCTCGAGCAAACTTCCAGC 59.500 57.895 31.91 0.17 41.59 4.85
2212 2341 9.135189 AGCAAACTTCCAGCAATATATTTCATA 57.865 29.630 0.00 0.00 0.00 2.15
2220 2349 7.884354 TCCAGCAATATATTTCATATGTGCTCA 59.116 33.333 9.50 0.00 41.76 4.26
2222 2351 9.556030 CAGCAATATATTTCATATGTGCTCAAG 57.444 33.333 9.50 0.00 41.76 3.02
2234 2363 3.486285 GCTCAAGCAAACTTCCAGC 57.514 52.632 0.00 0.00 41.59 4.85
2238 2367 3.057315 GCTCAAGCAAACTTCCAGCAATA 60.057 43.478 0.00 0.00 38.18 1.90
2239 2368 4.381292 GCTCAAGCAAACTTCCAGCAATAT 60.381 41.667 0.00 0.00 38.18 1.28
2240 2369 5.163622 GCTCAAGCAAACTTCCAGCAATATA 60.164 40.000 0.00 0.00 38.18 0.86
2241 2370 6.460676 GCTCAAGCAAACTTCCAGCAATATAT 60.461 38.462 0.00 0.00 38.18 0.86
2242 2371 7.408756 TCAAGCAAACTTCCAGCAATATATT 57.591 32.000 0.00 0.00 32.29 1.28
2243 2372 7.839907 TCAAGCAAACTTCCAGCAATATATTT 58.160 30.769 0.00 0.00 32.29 1.40
2244 2373 7.975616 TCAAGCAAACTTCCAGCAATATATTTC 59.024 33.333 0.00 0.00 32.29 2.17
2245 2374 7.408756 AGCAAACTTCCAGCAATATATTTCA 57.591 32.000 0.00 0.00 0.00 2.69
2246 2375 8.015185 AGCAAACTTCCAGCAATATATTTCAT 57.985 30.769 0.00 0.00 0.00 2.57
2247 2376 9.135189 AGCAAACTTCCAGCAATATATTTCATA 57.865 29.630 0.00 0.00 0.00 2.15
2248 2377 9.918630 GCAAACTTCCAGCAATATATTTCATAT 57.081 29.630 0.00 0.00 0.00 1.78
2252 2381 8.517878 ACTTCCAGCAATATATTTCATATGTGC 58.482 33.333 1.90 2.68 37.62 4.57
2253 2382 8.640063 TTCCAGCAATATATTTCATATGTGCT 57.360 30.769 7.22 7.22 43.13 4.40
2254 2383 8.272545 TCCAGCAATATATTTCATATGTGCTC 57.727 34.615 9.50 0.00 41.76 4.26
2255 2384 7.884354 TCCAGCAATATATTTCATATGTGCTCA 59.116 33.333 9.50 0.00 41.76 4.26
2256 2385 8.517056 CCAGCAATATATTTCATATGTGCTCAA 58.483 33.333 9.50 0.00 41.76 3.02
2257 2386 9.556030 CAGCAATATATTTCATATGTGCTCAAG 57.444 33.333 9.50 0.00 41.76 3.02
2258 2387 8.242053 AGCAATATATTTCATATGTGCTCAAGC 58.758 33.333 7.22 0.00 40.73 4.01
2269 2398 3.486285 GCTCAAGCAAACTTCCAGC 57.514 52.632 0.00 0.00 41.59 4.85
2270 2399 0.670162 GCTCAAGCAAACTTCCAGCA 59.330 50.000 0.00 0.00 38.18 4.41
2271 2400 1.067516 GCTCAAGCAAACTTCCAGCAA 59.932 47.619 0.00 0.00 38.18 3.91
2272 2401 2.288640 GCTCAAGCAAACTTCCAGCAAT 60.289 45.455 0.00 0.00 38.18 3.56
2273 2402 3.057315 GCTCAAGCAAACTTCCAGCAATA 60.057 43.478 0.00 0.00 38.18 1.90
2274 2403 4.381292 GCTCAAGCAAACTTCCAGCAATAT 60.381 41.667 0.00 0.00 38.18 1.28
2275 2404 5.163622 GCTCAAGCAAACTTCCAGCAATATA 60.164 40.000 0.00 0.00 38.18 0.86
2276 2405 6.460676 GCTCAAGCAAACTTCCAGCAATATAT 60.461 38.462 0.00 0.00 38.18 0.86
2277 2406 7.408756 TCAAGCAAACTTCCAGCAATATATT 57.591 32.000 0.00 0.00 32.29 1.28
2278 2407 7.839907 TCAAGCAAACTTCCAGCAATATATTT 58.160 30.769 0.00 0.00 32.29 1.40
2279 2408 7.975616 TCAAGCAAACTTCCAGCAATATATTTC 59.024 33.333 0.00 0.00 32.29 2.17
2280 2409 7.408756 AGCAAACTTCCAGCAATATATTTCA 57.591 32.000 0.00 0.00 0.00 2.69
2281 2410 8.015185 AGCAAACTTCCAGCAATATATTTCAT 57.985 30.769 0.00 0.00 0.00 2.57
2282 2411 9.135189 AGCAAACTTCCAGCAATATATTTCATA 57.865 29.630 0.00 0.00 0.00 2.15
2283 2412 9.918630 GCAAACTTCCAGCAATATATTTCATAT 57.081 29.630 0.00 0.00 0.00 1.78
2287 2416 8.517878 ACTTCCAGCAATATATTTCATATGTGC 58.482 33.333 1.90 2.68 37.62 4.57
2288 2417 8.640063 TTCCAGCAATATATTTCATATGTGCT 57.360 30.769 7.22 7.22 43.13 4.40
2289 2418 8.272545 TCCAGCAATATATTTCATATGTGCTC 57.727 34.615 9.50 0.00 41.76 4.26
2290 2419 7.884354 TCCAGCAATATATTTCATATGTGCTCA 59.116 33.333 9.50 0.00 41.76 4.26
2291 2420 8.517056 CCAGCAATATATTTCATATGTGCTCAA 58.483 33.333 9.50 0.00 41.76 3.02
2292 2421 9.556030 CAGCAATATATTTCATATGTGCTCAAG 57.444 33.333 9.50 0.00 41.76 3.02
2293 2422 8.242053 AGCAATATATTTCATATGTGCTCAAGC 58.758 33.333 7.22 0.00 40.73 4.01
2330 2459 2.169769 TGGATCCTCGAATGTTACACCC 59.830 50.000 14.23 0.00 0.00 4.61
2382 2514 0.111446 TCGTGGCATCCCCTTTTTGA 59.889 50.000 0.00 0.00 0.00 2.69
2400 2532 7.920151 CCTTTTTGAAATCACACTGACACATTA 59.080 33.333 0.00 0.00 0.00 1.90
2404 2536 9.891828 TTTGAAATCACACTGACACATTAATAC 57.108 29.630 0.00 0.00 0.00 1.89
2449 2581 1.528129 TGTGGCGCATTGACAATGTA 58.472 45.000 25.18 10.18 37.33 2.29
2450 2582 1.198867 TGTGGCGCATTGACAATGTAC 59.801 47.619 25.18 18.09 37.33 2.90
2455 2587 2.879248 CGCATTGACAATGTACGATCG 58.121 47.619 25.18 14.88 41.01 3.69
2457 2589 3.361051 CGCATTGACAATGTACGATCGAG 60.361 47.826 24.34 6.51 41.01 4.04
2470 2602 5.877012 TGTACGATCGAGTAGTCTTAAAGGT 59.123 40.000 24.34 0.00 0.00 3.50
2472 2604 7.712639 TGTACGATCGAGTAGTCTTAAAGGTAT 59.287 37.037 24.34 0.00 0.00 2.73
2484 2616 1.668826 AAAGGTATGGGCCACTCTCA 58.331 50.000 9.28 0.00 0.00 3.27
2499 2631 5.391736 GCCACTCTCATCAACAAGAAAGATG 60.392 44.000 0.00 0.00 40.29 2.90
2501 2633 6.128336 CCACTCTCATCAACAAGAAAGATGAC 60.128 42.308 0.00 0.00 42.17 3.06
2502 2634 6.649973 CACTCTCATCAACAAGAAAGATGACT 59.350 38.462 0.00 0.00 42.17 3.41
2507 2639 8.908786 TCATCAACAAGAAAGATGACTAACTT 57.091 30.769 0.00 0.00 42.17 2.66
2508 2640 8.777413 TCATCAACAAGAAAGATGACTAACTTG 58.223 33.333 0.00 0.00 42.17 3.16
2514 2646 2.969628 AGATGACTAACTTGGAGGCG 57.030 50.000 0.00 0.00 0.00 5.52
2544 2676 7.020010 GTGTCTTTTGATGAATCATGTCACTC 58.980 38.462 0.00 0.00 36.56 3.51
2546 2678 7.020010 GTCTTTTGATGAATCATGTCACTCAC 58.980 38.462 0.00 0.00 36.56 3.51
2547 2679 6.711645 TCTTTTGATGAATCATGTCACTCACA 59.288 34.615 0.00 0.00 40.18 3.58
2551 2724 8.741603 TTGATGAATCATGTCACTCACAATAT 57.258 30.769 0.00 0.00 38.97 1.28
2553 2726 8.617809 TGATGAATCATGTCACTCACAATATTG 58.382 33.333 14.01 14.01 38.97 1.90
2557 2730 6.499234 TCATGTCACTCACAATATTGTTGG 57.501 37.500 18.50 15.27 39.91 3.77
2559 2732 6.489700 TCATGTCACTCACAATATTGTTGGTT 59.510 34.615 18.50 1.01 39.91 3.67
2585 2758 5.801531 TTCTAGTAAGCTTGACAGTTCCA 57.198 39.130 9.86 0.00 0.00 3.53
2602 2775 1.612950 TCCATGTGTTGTTGGCATGTC 59.387 47.619 0.00 0.00 38.53 3.06
2604 2777 1.340568 CATGTGTTGTTGGCATGTCCA 59.659 47.619 4.93 4.93 44.85 4.02
2654 2827 8.842358 ATGAATCTCAATTTTCTTGCAACATT 57.158 26.923 0.00 0.00 0.00 2.71
2664 2837 8.715191 ATTTTCTTGCAACATTAACTTTGTGA 57.285 26.923 0.00 0.00 0.00 3.58
2668 2841 8.715191 TCTTGCAACATTAACTTTGTGATTTT 57.285 26.923 0.00 0.00 0.00 1.82
2701 2874 7.665561 TTGCCTTCAAAATTTATTTGTAGCC 57.334 32.000 0.00 0.00 0.00 3.93
2703 2876 7.220030 TGCCTTCAAAATTTATTTGTAGCCAA 58.780 30.769 0.00 0.00 0.00 4.52
2734 2907 9.793259 TTAGTCTTTCCATTTGAACTCTACAAT 57.207 29.630 0.00 0.00 31.05 2.71
2741 2914 6.265196 TCCATTTGAACTCTACAATTTGCACT 59.735 34.615 0.00 0.00 0.00 4.40
2742 2915 7.446931 TCCATTTGAACTCTACAATTTGCACTA 59.553 33.333 0.00 0.00 0.00 2.74
2745 2918 7.801716 TTGAACTCTACAATTTGCACTACTT 57.198 32.000 0.00 0.00 0.00 2.24
2746 2919 7.421530 TGAACTCTACAATTTGCACTACTTC 57.578 36.000 0.00 0.00 0.00 3.01
2759 2932 8.677148 TTTGCACTACTTCTTTTGATCTAGTT 57.323 30.769 0.00 0.00 0.00 2.24
2775 2949 9.877178 TTGATCTAGTTTCTAAATTGGTCTCTC 57.123 33.333 0.00 0.00 0.00 3.20
2813 2987 5.447757 TGATGAGAAAATGGTGATGGCATA 58.552 37.500 0.00 0.00 0.00 3.14
2815 2989 5.777850 TGAGAAAATGGTGATGGCATATG 57.222 39.130 0.00 0.00 0.00 1.78
2816 2990 4.038282 TGAGAAAATGGTGATGGCATATGC 59.962 41.667 19.79 19.79 41.14 3.14
2839 3013 3.067106 CACAGCGAGTGGTTTCTATTGT 58.933 45.455 4.63 0.00 44.69 2.71
2841 3015 3.006967 ACAGCGAGTGGTTTCTATTGTCT 59.993 43.478 0.00 0.00 0.00 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 0.524414 AAAAGTTAATCGGGCCGTGC 59.476 50.000 27.32 12.25 0.00 5.34
36 37 9.084533 GTTGGCCCATATTAGGATACATAAAAA 57.915 33.333 0.00 0.00 41.41 1.94
37 38 8.228206 TGTTGGCCCATATTAGGATACATAAAA 58.772 33.333 0.00 0.00 41.41 1.52
38 39 7.760607 TGTTGGCCCATATTAGGATACATAAA 58.239 34.615 0.00 0.00 41.41 1.40
39 40 7.336475 TGTTGGCCCATATTAGGATACATAA 57.664 36.000 0.00 0.00 41.41 1.90
40 41 6.069673 CCTGTTGGCCCATATTAGGATACATA 60.070 42.308 0.00 0.00 41.41 2.29
41 42 5.281193 CCTGTTGGCCCATATTAGGATACAT 60.281 44.000 0.00 0.00 41.41 2.29
42 43 4.042809 CCTGTTGGCCCATATTAGGATACA 59.957 45.833 0.00 0.00 41.41 2.29
43 44 4.042934 ACCTGTTGGCCCATATTAGGATAC 59.957 45.833 0.00 0.00 36.63 2.24
44 45 4.247814 ACCTGTTGGCCCATATTAGGATA 58.752 43.478 0.00 0.00 36.63 2.59
45 46 3.063650 ACCTGTTGGCCCATATTAGGAT 58.936 45.455 0.00 0.00 36.63 3.24
46 47 2.498441 ACCTGTTGGCCCATATTAGGA 58.502 47.619 0.00 0.00 36.63 2.94
47 48 4.447138 TTACCTGTTGGCCCATATTAGG 57.553 45.455 0.00 1.97 36.63 2.69
48 49 6.783708 TTTTTACCTGTTGGCCCATATTAG 57.216 37.500 0.00 0.00 36.63 1.73
49 50 7.507616 CCTATTTTTACCTGTTGGCCCATATTA 59.492 37.037 0.00 0.00 36.63 0.98
50 51 6.326323 CCTATTTTTACCTGTTGGCCCATATT 59.674 38.462 0.00 0.00 36.63 1.28
51 52 5.838521 CCTATTTTTACCTGTTGGCCCATAT 59.161 40.000 0.00 0.00 36.63 1.78
52 53 5.205056 CCTATTTTTACCTGTTGGCCCATA 58.795 41.667 0.00 0.00 36.63 2.74
53 54 4.030216 CCTATTTTTACCTGTTGGCCCAT 58.970 43.478 0.00 0.00 36.63 4.00
54 55 3.436243 CCTATTTTTACCTGTTGGCCCA 58.564 45.455 0.00 0.00 36.63 5.36
55 56 2.167693 GCCTATTTTTACCTGTTGGCCC 59.832 50.000 0.00 0.00 36.63 5.80
56 57 3.096852 AGCCTATTTTTACCTGTTGGCC 58.903 45.455 0.00 0.00 39.90 5.36
57 58 5.907866 TTAGCCTATTTTTACCTGTTGGC 57.092 39.130 0.00 0.00 39.40 4.52
58 59 7.327518 CGTTTTTAGCCTATTTTTACCTGTTGG 59.672 37.037 0.00 0.00 39.83 3.77
59 60 7.148869 GCGTTTTTAGCCTATTTTTACCTGTTG 60.149 37.037 0.00 0.00 0.00 3.33
60 61 6.864685 GCGTTTTTAGCCTATTTTTACCTGTT 59.135 34.615 0.00 0.00 0.00 3.16
61 62 6.208007 AGCGTTTTTAGCCTATTTTTACCTGT 59.792 34.615 0.00 0.00 34.64 4.00
62 63 6.617879 AGCGTTTTTAGCCTATTTTTACCTG 58.382 36.000 0.00 0.00 34.64 4.00
63 64 6.431852 TGAGCGTTTTTAGCCTATTTTTACCT 59.568 34.615 0.00 0.00 34.64 3.08
64 65 6.614160 TGAGCGTTTTTAGCCTATTTTTACC 58.386 36.000 0.00 0.00 34.64 2.85
65 66 7.270579 CACTGAGCGTTTTTAGCCTATTTTTAC 59.729 37.037 0.00 0.00 34.64 2.01
66 67 7.302524 CACTGAGCGTTTTTAGCCTATTTTTA 58.697 34.615 0.00 0.00 34.64 1.52
67 68 6.149633 CACTGAGCGTTTTTAGCCTATTTTT 58.850 36.000 0.00 0.00 34.64 1.94
68 69 5.699839 CACTGAGCGTTTTTAGCCTATTTT 58.300 37.500 0.00 0.00 34.64 1.82
69 70 4.379499 GCACTGAGCGTTTTTAGCCTATTT 60.379 41.667 0.00 0.00 34.64 1.40
70 71 3.127030 GCACTGAGCGTTTTTAGCCTATT 59.873 43.478 0.00 0.00 34.64 1.73
71 72 2.678336 GCACTGAGCGTTTTTAGCCTAT 59.322 45.455 0.00 0.00 34.64 2.57
72 73 2.073816 GCACTGAGCGTTTTTAGCCTA 58.926 47.619 0.00 0.00 34.64 3.93
73 74 0.875059 GCACTGAGCGTTTTTAGCCT 59.125 50.000 0.00 0.00 34.64 4.58
74 75 3.384702 GCACTGAGCGTTTTTAGCC 57.615 52.632 0.00 0.00 34.64 3.93
84 85 1.063174 CTCCTATTTTGCGCACTGAGC 59.937 52.381 11.12 0.00 40.87 4.26
85 86 1.667724 CCTCCTATTTTGCGCACTGAG 59.332 52.381 11.12 9.66 0.00 3.35
86 87 1.003118 ACCTCCTATTTTGCGCACTGA 59.997 47.619 11.12 0.00 0.00 3.41
87 88 1.453155 ACCTCCTATTTTGCGCACTG 58.547 50.000 11.12 0.00 0.00 3.66
88 89 2.500098 TCTACCTCCTATTTTGCGCACT 59.500 45.455 11.12 0.00 0.00 4.40
89 90 2.901249 TCTACCTCCTATTTTGCGCAC 58.099 47.619 11.12 0.00 0.00 5.34
90 91 3.838244 ATCTACCTCCTATTTTGCGCA 57.162 42.857 5.66 5.66 0.00 6.09
91 92 5.177696 CACTAATCTACCTCCTATTTTGCGC 59.822 44.000 0.00 0.00 0.00 6.09
92 93 5.696724 CCACTAATCTACCTCCTATTTTGCG 59.303 44.000 0.00 0.00 0.00 4.85
93 94 5.998363 CCCACTAATCTACCTCCTATTTTGC 59.002 44.000 0.00 0.00 0.00 3.68
94 95 5.998363 GCCCACTAATCTACCTCCTATTTTG 59.002 44.000 0.00 0.00 0.00 2.44
95 96 5.073280 GGCCCACTAATCTACCTCCTATTTT 59.927 44.000 0.00 0.00 0.00 1.82
96 97 4.597940 GGCCCACTAATCTACCTCCTATTT 59.402 45.833 0.00 0.00 0.00 1.40
97 98 4.140423 AGGCCCACTAATCTACCTCCTATT 60.140 45.833 0.00 0.00 0.00 1.73
98 99 3.406498 AGGCCCACTAATCTACCTCCTAT 59.594 47.826 0.00 0.00 0.00 2.57
99 100 2.795960 AGGCCCACTAATCTACCTCCTA 59.204 50.000 0.00 0.00 0.00 2.94
100 101 1.581149 AGGCCCACTAATCTACCTCCT 59.419 52.381 0.00 0.00 0.00 3.69
101 102 1.694696 CAGGCCCACTAATCTACCTCC 59.305 57.143 0.00 0.00 0.00 4.30
102 103 2.365941 GTCAGGCCCACTAATCTACCTC 59.634 54.545 0.00 0.00 0.00 3.85
103 104 2.399580 GTCAGGCCCACTAATCTACCT 58.600 52.381 0.00 0.00 0.00 3.08
104 105 1.068741 CGTCAGGCCCACTAATCTACC 59.931 57.143 0.00 0.00 0.00 3.18
105 106 1.755380 ACGTCAGGCCCACTAATCTAC 59.245 52.381 0.00 0.00 0.00 2.59
106 107 1.754803 CACGTCAGGCCCACTAATCTA 59.245 52.381 0.00 0.00 0.00 1.98
107 108 0.537188 CACGTCAGGCCCACTAATCT 59.463 55.000 0.00 0.00 0.00 2.40
108 109 1.090052 GCACGTCAGGCCCACTAATC 61.090 60.000 0.00 0.00 0.00 1.75
109 110 1.078426 GCACGTCAGGCCCACTAAT 60.078 57.895 0.00 0.00 0.00 1.73
110 111 2.345991 GCACGTCAGGCCCACTAA 59.654 61.111 0.00 0.00 0.00 2.24
111 112 3.702048 GGCACGTCAGGCCCACTA 61.702 66.667 0.00 0.00 45.87 2.74
133 134 3.248446 TATGCTAATCGGGCCGGCC 62.248 63.158 38.57 38.57 0.00 6.13
134 135 2.033194 GTATGCTAATCGGGCCGGC 61.033 63.158 27.98 21.18 0.00 6.13
135 136 1.736645 CGTATGCTAATCGGGCCGG 60.737 63.158 27.98 11.17 0.00 6.13
136 137 1.736645 CCGTATGCTAATCGGGCCG 60.737 63.158 22.51 22.51 40.49 6.13
137 138 4.278956 CCGTATGCTAATCGGGCC 57.721 61.111 0.00 0.00 40.49 5.80
140 141 1.736645 CGGCCCGTATGCTAATCGG 60.737 63.158 0.00 0.00 43.30 4.18
141 142 1.006571 ACGGCCCGTATGCTAATCG 60.007 57.895 7.20 0.00 38.73 3.34
142 143 1.566018 GCACGGCCCGTATGCTAATC 61.566 60.000 9.25 0.00 38.32 1.75
143 144 1.597027 GCACGGCCCGTATGCTAAT 60.597 57.895 9.25 0.00 38.32 1.73
144 145 2.202960 GCACGGCCCGTATGCTAA 60.203 61.111 9.25 0.00 38.32 3.09
145 146 4.230002 GGCACGGCCCGTATGCTA 62.230 66.667 9.25 0.00 44.06 3.49
196 197 1.657094 CGATTATTATACGGGCCGTGC 59.343 52.381 39.80 16.99 41.39 5.34
197 198 2.664568 CACGATTATTATACGGGCCGTG 59.335 50.000 39.80 22.32 41.39 4.94
198 199 2.950433 CACGATTATTATACGGGCCGT 58.050 47.619 35.91 35.91 44.35 5.68
202 203 4.679662 CCTAGGCACGATTATTATACGGG 58.320 47.826 0.00 0.00 0.00 5.28
203 204 4.110482 GCCTAGGCACGATTATTATACGG 58.890 47.826 29.33 0.00 41.49 4.02
204 205 3.789756 CGCCTAGGCACGATTATTATACG 59.210 47.826 32.47 7.82 42.06 3.06
205 206 4.110482 CCGCCTAGGCACGATTATTATAC 58.890 47.826 32.47 0.00 42.06 1.47
206 207 3.131577 CCCGCCTAGGCACGATTATTATA 59.868 47.826 32.47 0.00 42.06 0.98
207 208 2.093658 CCCGCCTAGGCACGATTATTAT 60.094 50.000 32.47 0.00 42.06 1.28
208 209 1.274167 CCCGCCTAGGCACGATTATTA 59.726 52.381 32.47 0.00 42.06 0.98
209 210 0.034896 CCCGCCTAGGCACGATTATT 59.965 55.000 32.47 0.00 42.06 1.40
210 211 1.671742 CCCGCCTAGGCACGATTAT 59.328 57.895 32.47 0.00 42.06 1.28
211 212 3.134879 CCCGCCTAGGCACGATTA 58.865 61.111 32.47 0.00 42.06 1.75
237 238 0.179048 CATCCTAATCGTGCCTGGCA 60.179 55.000 19.30 19.30 35.60 4.92
238 239 0.886490 CCATCCTAATCGTGCCTGGC 60.886 60.000 12.87 12.87 0.00 4.85
239 240 0.250467 CCCATCCTAATCGTGCCTGG 60.250 60.000 0.00 0.00 0.00 4.45
240 241 0.886490 GCCCATCCTAATCGTGCCTG 60.886 60.000 0.00 0.00 0.00 4.85
241 242 1.451936 GCCCATCCTAATCGTGCCT 59.548 57.895 0.00 0.00 0.00 4.75
242 243 1.600916 GGCCCATCCTAATCGTGCC 60.601 63.158 0.00 0.00 0.00 5.01
243 244 1.961277 CGGCCCATCCTAATCGTGC 60.961 63.158 0.00 0.00 0.00 5.34
244 245 0.880278 CACGGCCCATCCTAATCGTG 60.880 60.000 0.00 0.00 41.09 4.35
245 246 1.445942 CACGGCCCATCCTAATCGT 59.554 57.895 0.00 0.00 0.00 3.73
246 247 1.961277 GCACGGCCCATCCTAATCG 60.961 63.158 0.00 0.00 0.00 3.34
247 248 1.600916 GGCACGGCCCATCCTAATC 60.601 63.158 0.00 0.00 44.06 1.75
248 249 2.515901 GGCACGGCCCATCCTAAT 59.484 61.111 0.00 0.00 44.06 1.73
283 284 2.120909 CCATAGCTGGCCAAACGGG 61.121 63.158 7.01 0.75 35.23 5.28
284 285 3.513225 CCATAGCTGGCCAAACGG 58.487 61.111 7.01 0.00 35.23 4.44
293 294 1.145759 CGTGGCGTGTACCATAGCTG 61.146 60.000 0.00 0.00 43.01 4.24
294 295 1.141019 CGTGGCGTGTACCATAGCT 59.859 57.895 0.00 0.00 43.01 3.32
295 296 2.522638 GCGTGGCGTGTACCATAGC 61.523 63.158 0.00 0.00 43.01 2.97
296 297 0.529773 ATGCGTGGCGTGTACCATAG 60.530 55.000 0.00 0.00 43.01 2.23
297 298 0.528901 GATGCGTGGCGTGTACCATA 60.529 55.000 0.00 0.00 43.01 2.74
298 299 1.813753 GATGCGTGGCGTGTACCAT 60.814 57.895 0.00 0.00 43.01 3.55
299 300 1.596895 TAGATGCGTGGCGTGTACCA 61.597 55.000 0.00 0.00 37.38 3.25
300 301 1.140161 TAGATGCGTGGCGTGTACC 59.860 57.895 0.00 0.00 0.00 3.34
301 302 0.457166 TGTAGATGCGTGGCGTGTAC 60.457 55.000 9.43 9.43 42.27 2.90
302 303 0.179148 CTGTAGATGCGTGGCGTGTA 60.179 55.000 0.00 0.00 0.00 2.90
303 304 1.446099 CTGTAGATGCGTGGCGTGT 60.446 57.895 0.00 0.00 0.00 4.49
304 305 2.802667 GCTGTAGATGCGTGGCGTG 61.803 63.158 0.00 0.00 0.00 5.34
305 306 2.509336 GCTGTAGATGCGTGGCGT 60.509 61.111 0.00 0.00 0.00 5.68
306 307 3.264897 GGCTGTAGATGCGTGGCG 61.265 66.667 0.00 0.00 0.00 5.69
307 308 3.264897 CGGCTGTAGATGCGTGGC 61.265 66.667 0.00 0.00 0.00 5.01
308 309 2.586079 CCGGCTGTAGATGCGTGG 60.586 66.667 0.00 0.00 0.00 4.94
309 310 3.264897 GCCGGCTGTAGATGCGTG 61.265 66.667 22.15 0.00 0.00 5.34
310 311 4.873129 CGCCGGCTGTAGATGCGT 62.873 66.667 26.68 0.00 40.33 5.24
312 313 1.661821 CTACGCCGGCTGTAGATGC 60.662 63.158 34.91 8.24 41.44 3.91
313 314 1.007271 CCTACGCCGGCTGTAGATG 60.007 63.158 37.44 26.29 41.44 2.90
314 315 2.857744 GCCTACGCCGGCTGTAGAT 61.858 63.158 37.44 18.04 46.63 1.98
315 316 3.524606 GCCTACGCCGGCTGTAGA 61.525 66.667 37.44 20.23 46.63 2.59
322 323 3.833645 TACAGCTGCCTACGCCGG 61.834 66.667 15.27 0.00 0.00 6.13
323 324 2.582498 GTACAGCTGCCTACGCCG 60.582 66.667 15.27 0.00 0.00 6.46
324 325 1.227002 GAGTACAGCTGCCTACGCC 60.227 63.158 15.27 4.18 0.00 5.68
325 326 0.802607 GTGAGTACAGCTGCCTACGC 60.803 60.000 15.27 12.11 0.00 4.42
326 327 0.811915 AGTGAGTACAGCTGCCTACG 59.188 55.000 15.27 0.00 0.00 3.51
327 328 2.996621 CAAAGTGAGTACAGCTGCCTAC 59.003 50.000 15.27 10.06 0.00 3.18
328 329 2.632996 ACAAAGTGAGTACAGCTGCCTA 59.367 45.455 15.27 0.00 0.00 3.93
329 330 1.417890 ACAAAGTGAGTACAGCTGCCT 59.582 47.619 15.27 10.20 0.00 4.75
330 331 1.884235 ACAAAGTGAGTACAGCTGCC 58.116 50.000 15.27 4.53 0.00 4.85
331 332 3.971032 AAACAAAGTGAGTACAGCTGC 57.029 42.857 15.27 0.00 0.00 5.25
332 333 5.050091 CAGGTAAACAAAGTGAGTACAGCTG 60.050 44.000 13.48 13.48 0.00 4.24
333 334 5.057149 CAGGTAAACAAAGTGAGTACAGCT 58.943 41.667 0.00 0.00 0.00 4.24
334 335 4.213482 CCAGGTAAACAAAGTGAGTACAGC 59.787 45.833 0.00 0.00 0.00 4.40
335 336 4.213482 GCCAGGTAAACAAAGTGAGTACAG 59.787 45.833 0.00 0.00 0.00 2.74
336 337 4.131596 GCCAGGTAAACAAAGTGAGTACA 58.868 43.478 0.00 0.00 0.00 2.90
337 338 3.501062 GGCCAGGTAAACAAAGTGAGTAC 59.499 47.826 0.00 0.00 0.00 2.73
338 339 3.136809 TGGCCAGGTAAACAAAGTGAGTA 59.863 43.478 0.00 0.00 0.00 2.59
339 340 2.092103 TGGCCAGGTAAACAAAGTGAGT 60.092 45.455 0.00 0.00 0.00 3.41
340 341 2.582052 TGGCCAGGTAAACAAAGTGAG 58.418 47.619 0.00 0.00 0.00 3.51
341 342 2.738587 TGGCCAGGTAAACAAAGTGA 57.261 45.000 0.00 0.00 0.00 3.41
342 343 2.029110 CCATGGCCAGGTAAACAAAGTG 60.029 50.000 17.55 1.85 0.00 3.16
343 344 2.247358 CCATGGCCAGGTAAACAAAGT 58.753 47.619 17.55 0.00 0.00 2.66
344 345 1.550072 CCCATGGCCAGGTAAACAAAG 59.450 52.381 17.55 0.00 0.00 2.77
345 346 1.638529 CCCATGGCCAGGTAAACAAA 58.361 50.000 17.55 0.00 0.00 2.83
346 347 0.902516 GCCCATGGCCAGGTAAACAA 60.903 55.000 17.55 0.00 44.06 2.83
347 348 1.304879 GCCCATGGCCAGGTAAACA 60.305 57.895 17.55 0.00 44.06 2.83
348 349 3.616086 GCCCATGGCCAGGTAAAC 58.384 61.111 17.55 0.00 44.06 2.01
367 368 2.202892 GACAAGATCGGGCCGGTC 60.203 66.667 31.31 31.31 37.24 4.79
368 369 3.782443 GGACAAGATCGGGCCGGT 61.782 66.667 27.98 21.98 0.00 5.28
369 370 3.781307 TGGACAAGATCGGGCCGG 61.781 66.667 27.98 12.18 0.00 6.13
370 371 2.511600 GTGGACAAGATCGGGCCG 60.512 66.667 22.51 22.51 0.00 6.13
371 372 2.511600 CGTGGACAAGATCGGGCC 60.512 66.667 5.42 5.42 0.00 5.80
372 373 2.511600 CCGTGGACAAGATCGGGC 60.512 66.667 0.00 0.00 39.41 6.13
374 375 2.511600 GCCCGTGGACAAGATCGG 60.512 66.667 0.00 0.00 42.22 4.18
375 376 2.511600 GGCCCGTGGACAAGATCG 60.512 66.667 0.00 0.00 0.00 3.69
376 377 2.511600 CGGCCCGTGGACAAGATC 60.512 66.667 0.00 0.00 0.00 2.75
377 378 4.096003 CCGGCCCGTGGACAAGAT 62.096 66.667 0.85 0.00 0.00 2.40
395 396 1.874231 GCTTAAAATCTAGGCCCGAGC 59.126 52.381 0.00 0.00 38.76 5.03
396 397 2.495084 GGCTTAAAATCTAGGCCCGAG 58.505 52.381 0.00 0.00 37.12 4.63
397 398 2.632987 GGCTTAAAATCTAGGCCCGA 57.367 50.000 0.00 0.00 37.12 5.14
401 402 0.952280 GCCGGGCTTAAAATCTAGGC 59.048 55.000 12.87 0.00 36.32 3.93
402 403 1.226746 CGCCGGGCTTAAAATCTAGG 58.773 55.000 18.34 0.00 0.00 3.02
403 404 1.226746 CCGCCGGGCTTAAAATCTAG 58.773 55.000 18.34 0.00 0.00 2.43
404 405 3.390003 CCGCCGGGCTTAAAATCTA 57.610 52.632 18.34 0.00 0.00 1.98
405 406 4.235731 CCGCCGGGCTTAAAATCT 57.764 55.556 18.34 0.00 0.00 2.40
437 438 1.507141 CGAATACGATGGGCCCAAGC 61.507 60.000 32.58 22.94 42.66 4.01
438 439 1.507141 GCGAATACGATGGGCCCAAG 61.507 60.000 32.58 27.57 42.66 3.61
439 440 1.525077 GCGAATACGATGGGCCCAA 60.525 57.895 32.58 13.66 42.66 4.12
440 441 2.110213 GCGAATACGATGGGCCCA 59.890 61.111 30.92 30.92 42.66 5.36
441 442 2.110213 TGCGAATACGATGGGCCC 59.890 61.111 17.59 17.59 42.66 5.80
442 443 2.594962 CGTGCGAATACGATGGGCC 61.595 63.158 0.00 0.00 46.46 5.80
443 444 1.426041 AACGTGCGAATACGATGGGC 61.426 55.000 12.97 0.00 46.46 5.36
444 445 1.842720 TAACGTGCGAATACGATGGG 58.157 50.000 12.97 0.00 46.46 4.00
445 446 2.346012 CGTTAACGTGCGAATACGATGG 60.346 50.000 19.75 0.00 46.46 3.51
446 447 2.527087 TCGTTAACGTGCGAATACGATG 59.473 45.455 25.98 0.00 46.46 3.84
447 448 2.784505 TCGTTAACGTGCGAATACGAT 58.215 42.857 25.98 5.12 46.46 3.73
448 449 2.239751 TCGTTAACGTGCGAATACGA 57.760 45.000 25.98 1.23 46.46 3.43
450 451 3.001365 CCTCTTCGTTAACGTGCGAATAC 60.001 47.826 25.98 0.00 44.46 1.89
451 452 3.173599 CCTCTTCGTTAACGTGCGAATA 58.826 45.455 25.98 12.80 44.46 1.75
452 453 1.990563 CCTCTTCGTTAACGTGCGAAT 59.009 47.619 25.98 0.00 44.46 3.34
453 454 1.411394 CCTCTTCGTTAACGTGCGAA 58.589 50.000 25.98 17.54 43.55 4.70
454 455 1.005294 GCCTCTTCGTTAACGTGCGA 61.005 55.000 25.98 18.44 40.80 5.10
455 456 1.414897 GCCTCTTCGTTAACGTGCG 59.585 57.895 25.98 15.60 40.80 5.34
456 457 1.632948 GGGCCTCTTCGTTAACGTGC 61.633 60.000 25.98 19.68 40.80 5.34
457 458 1.349259 CGGGCCTCTTCGTTAACGTG 61.349 60.000 25.98 19.39 40.80 4.49
458 459 1.080298 CGGGCCTCTTCGTTAACGT 60.080 57.895 25.98 0.00 40.80 3.99
459 460 1.808390 CCGGGCCTCTTCGTTAACG 60.808 63.158 21.85 21.85 41.45 3.18
460 461 2.104859 GCCGGGCCTCTTCGTTAAC 61.105 63.158 8.12 0.00 0.00 2.01
461 462 2.266689 GCCGGGCCTCTTCGTTAA 59.733 61.111 8.12 0.00 0.00 2.01
462 463 3.777910 GGCCGGGCCTCTTCGTTA 61.778 66.667 30.86 0.00 46.69 3.18
481 482 3.319441 TAAAAGCCCGCCGGACCTC 62.319 63.158 5.05 0.00 0.00 3.85
482 483 3.324108 TAAAAGCCCGCCGGACCT 61.324 61.111 5.05 0.00 0.00 3.85
483 484 2.822701 CTAAAAGCCCGCCGGACC 60.823 66.667 5.05 0.00 0.00 4.46
484 485 3.506096 GCTAAAAGCCCGCCGGAC 61.506 66.667 5.05 0.00 34.48 4.79
485 486 3.338275 ATGCTAAAAGCCCGCCGGA 62.338 57.895 5.05 0.00 41.51 5.14
486 487 2.828549 ATGCTAAAAGCCCGCCGG 60.829 61.111 0.00 0.00 41.51 6.13
487 488 1.447317 ATCATGCTAAAAGCCCGCCG 61.447 55.000 0.00 0.00 41.51 6.46
488 489 0.031178 CATCATGCTAAAAGCCCGCC 59.969 55.000 0.00 0.00 41.51 6.13
489 490 0.031178 CCATCATGCTAAAAGCCCGC 59.969 55.000 0.00 0.00 41.51 6.13
490 491 0.670162 CCCATCATGCTAAAAGCCCG 59.330 55.000 0.00 0.00 41.51 6.13
491 492 1.780503 ACCCATCATGCTAAAAGCCC 58.219 50.000 0.00 0.00 41.51 5.19
492 493 2.159057 CCAACCCATCATGCTAAAAGCC 60.159 50.000 0.00 0.00 41.51 4.35
493 494 2.159057 CCCAACCCATCATGCTAAAAGC 60.159 50.000 0.00 0.00 42.82 3.51
494 495 3.099141 ACCCAACCCATCATGCTAAAAG 58.901 45.455 0.00 0.00 0.00 2.27
495 496 3.182887 ACCCAACCCATCATGCTAAAA 57.817 42.857 0.00 0.00 0.00 1.52
496 497 2.917713 ACCCAACCCATCATGCTAAA 57.082 45.000 0.00 0.00 0.00 1.85
497 498 2.830923 CAAACCCAACCCATCATGCTAA 59.169 45.455 0.00 0.00 0.00 3.09
498 499 2.455557 CAAACCCAACCCATCATGCTA 58.544 47.619 0.00 0.00 0.00 3.49
499 500 1.269012 CAAACCCAACCCATCATGCT 58.731 50.000 0.00 0.00 0.00 3.79
500 501 0.249955 CCAAACCCAACCCATCATGC 59.750 55.000 0.00 0.00 0.00 4.06
501 502 0.903942 CCCAAACCCAACCCATCATG 59.096 55.000 0.00 0.00 0.00 3.07
502 503 0.909133 GCCCAAACCCAACCCATCAT 60.909 55.000 0.00 0.00 0.00 2.45
503 504 1.535202 GCCCAAACCCAACCCATCA 60.535 57.895 0.00 0.00 0.00 3.07
504 505 2.290287 GGCCCAAACCCAACCCATC 61.290 63.158 0.00 0.00 0.00 3.51
505 506 2.203922 GGCCCAAACCCAACCCAT 60.204 61.111 0.00 0.00 0.00 4.00
506 507 3.443479 AGGCCCAAACCCAACCCA 61.443 61.111 0.00 0.00 0.00 4.51
507 508 2.746947 ATCAGGCCCAAACCCAACCC 62.747 60.000 0.00 0.00 0.00 4.11
508 509 0.835971 AATCAGGCCCAAACCCAACC 60.836 55.000 0.00 0.00 0.00 3.77
509 510 1.055849 AAATCAGGCCCAAACCCAAC 58.944 50.000 0.00 0.00 0.00 3.77
510 511 1.813102 AAAATCAGGCCCAAACCCAA 58.187 45.000 0.00 0.00 0.00 4.12
511 512 1.813102 AAAAATCAGGCCCAAACCCA 58.187 45.000 0.00 0.00 0.00 4.51
512 513 2.236146 CCTAAAAATCAGGCCCAAACCC 59.764 50.000 0.00 0.00 0.00 4.11
513 514 3.610040 CCTAAAAATCAGGCCCAAACC 57.390 47.619 0.00 0.00 0.00 3.27
521 522 1.956477 CCATCGGGCCTAAAAATCAGG 59.044 52.381 0.84 0.00 36.16 3.86
548 549 3.546714 AAACCCAAGCCCGAGTCCG 62.547 63.158 0.00 0.00 0.00 4.79
549 550 0.826256 AAAAACCCAAGCCCGAGTCC 60.826 55.000 0.00 0.00 0.00 3.85
550 551 2.728397 AAAAACCCAAGCCCGAGTC 58.272 52.632 0.00 0.00 0.00 3.36
565 566 3.006752 CCTACCAAAGCCTGATGCAAAAA 59.993 43.478 0.00 0.00 44.83 1.94
566 567 2.562298 CCTACCAAAGCCTGATGCAAAA 59.438 45.455 0.00 0.00 44.83 2.44
567 568 2.170166 CCTACCAAAGCCTGATGCAAA 58.830 47.619 0.00 0.00 44.83 3.68
568 569 1.838112 CCTACCAAAGCCTGATGCAA 58.162 50.000 0.00 0.00 44.83 4.08
569 570 0.680921 GCCTACCAAAGCCTGATGCA 60.681 55.000 0.00 0.00 44.83 3.96
570 571 1.387295 GGCCTACCAAAGCCTGATGC 61.387 60.000 0.00 0.00 46.14 3.91
571 572 2.799176 GGCCTACCAAAGCCTGATG 58.201 57.895 0.00 0.00 46.14 3.07
593 594 1.410850 ATACCTGGCCATCTGTCGGG 61.411 60.000 5.51 4.26 0.00 5.14
594 595 0.250038 CATACCTGGCCATCTGTCGG 60.250 60.000 5.51 5.16 0.00 4.79
595 596 0.250038 CCATACCTGGCCATCTGTCG 60.250 60.000 5.51 0.00 35.23 4.35
596 597 3.713902 CCATACCTGGCCATCTGTC 57.286 57.895 5.51 0.00 35.23 3.51
606 607 2.872245 CGGATGCTACAAACCATACCTG 59.128 50.000 0.00 0.00 0.00 4.00
607 608 2.745152 GCGGATGCTACAAACCATACCT 60.745 50.000 0.00 0.00 38.39 3.08
608 609 1.602377 GCGGATGCTACAAACCATACC 59.398 52.381 0.00 0.00 38.39 2.73
609 610 1.260561 CGCGGATGCTACAAACCATAC 59.739 52.381 0.00 0.00 39.65 2.39
610 611 1.137282 TCGCGGATGCTACAAACCATA 59.863 47.619 6.13 0.00 39.65 2.74
611 612 0.107897 TCGCGGATGCTACAAACCAT 60.108 50.000 6.13 0.00 39.65 3.55
612 613 0.739462 CTCGCGGATGCTACAAACCA 60.739 55.000 6.13 0.00 39.65 3.67
613 614 0.459585 TCTCGCGGATGCTACAAACC 60.460 55.000 6.13 0.00 39.65 3.27
614 615 1.571919 ATCTCGCGGATGCTACAAAC 58.428 50.000 6.13 0.00 39.65 2.93
615 616 2.309528 AATCTCGCGGATGCTACAAA 57.690 45.000 6.13 0.00 39.65 2.83
616 617 2.361119 ACTAATCTCGCGGATGCTACAA 59.639 45.455 6.13 0.00 39.65 2.41
617 618 1.954382 ACTAATCTCGCGGATGCTACA 59.046 47.619 6.13 0.00 39.65 2.74
618 619 2.708386 ACTAATCTCGCGGATGCTAC 57.292 50.000 6.13 0.00 39.65 3.58
619 620 3.409570 ACTACTAATCTCGCGGATGCTA 58.590 45.455 6.13 0.00 39.65 3.49
620 621 2.231529 ACTACTAATCTCGCGGATGCT 58.768 47.619 6.13 0.00 39.65 3.79
621 622 2.708386 ACTACTAATCTCGCGGATGC 57.292 50.000 6.13 0.00 34.45 3.91
622 623 4.607955 TCAAACTACTAATCTCGCGGATG 58.392 43.478 6.13 0.00 34.45 3.51
623 624 4.913335 TCAAACTACTAATCTCGCGGAT 57.087 40.909 6.13 5.14 35.97 4.18
624 625 4.579340 AGATCAAACTACTAATCTCGCGGA 59.421 41.667 6.13 2.40 0.00 5.54
625 626 4.861210 AGATCAAACTACTAATCTCGCGG 58.139 43.478 6.13 0.00 0.00 6.46
626 627 8.508800 AATTAGATCAAACTACTAATCTCGCG 57.491 34.615 0.00 0.00 36.31 5.87
711 713 1.578206 GCGAGGCTTCCCACAAAGAC 61.578 60.000 0.00 0.00 34.24 3.01
716 718 4.704833 GCTGCGAGGCTTCCCACA 62.705 66.667 0.00 0.00 0.00 4.17
740 742 2.683933 CTACCCGTGCCTGGAGGT 60.684 66.667 0.00 0.29 37.57 3.85
750 752 3.797353 CCATGGCAGGCTACCCGT 61.797 66.667 0.00 0.00 35.76 5.28
765 767 1.125093 ATCAAGACACGTGGGGTCCA 61.125 55.000 21.57 0.00 35.89 4.02
772 774 4.822036 TGGGTTAAAATCAAGACACGTG 57.178 40.909 15.48 15.48 0.00 4.49
773 775 4.261447 GCTTGGGTTAAAATCAAGACACGT 60.261 41.667 14.19 0.00 39.97 4.49
798 800 1.600636 CACCGAAAGCTCAAGGCCA 60.601 57.895 5.01 0.00 43.05 5.36
894 916 4.043100 GGGTTTCGGGTGGAGGGG 62.043 72.222 0.00 0.00 0.00 4.79
895 917 2.933834 AGGGTTTCGGGTGGAGGG 60.934 66.667 0.00 0.00 0.00 4.30
896 918 2.669240 GAGGGTTTCGGGTGGAGG 59.331 66.667 0.00 0.00 0.00 4.30
944 967 0.583438 CGTCGGGCAGCAATTCTATG 59.417 55.000 0.00 0.00 0.00 2.23
948 977 3.093278 CTCGTCGGGCAGCAATTC 58.907 61.111 0.00 0.00 0.00 2.17
952 981 4.129737 GTAGCTCGTCGGGCAGCA 62.130 66.667 21.18 0.28 38.18 4.41
1176 1219 3.398406 GGGAATGTTTGCACCGAATTTT 58.602 40.909 0.00 0.00 0.00 1.82
1242 1292 0.108804 GAAGGAGAACGCGACCATGA 60.109 55.000 15.93 0.00 0.00 3.07
1273 1323 2.826738 AACAAGGTGCGTTGGCGT 60.827 55.556 9.05 0.00 44.10 5.68
1428 1478 3.330701 TCAAGTCAAGGCCCAAGAATACT 59.669 43.478 0.00 0.00 0.00 2.12
1447 1497 6.440436 CAACACAATTGTCATCATCTGTCAA 58.560 36.000 8.48 0.00 37.32 3.18
1832 1957 0.175760 ACGCATAGTCCATGACGCTT 59.824 50.000 0.00 0.00 37.55 4.68
1869 1994 6.613679 TGGTATTTTGAAAAGGGAGAAGGTTT 59.386 34.615 0.00 0.00 0.00 3.27
1882 2007 8.744652 TCTGAGTCTTTTGTTGGTATTTTGAAA 58.255 29.630 0.00 0.00 0.00 2.69
1905 2030 1.625315 TCCACAGATCCAACCAGTCTG 59.375 52.381 0.00 0.00 43.76 3.51
1912 2037 0.393537 CTGGCCTCCACAGATCCAAC 60.394 60.000 3.32 0.00 38.20 3.77
1928 2053 7.073883 CGCAGTTATGAAAATGATATCACTGG 58.926 38.462 7.78 0.00 32.43 4.00
1956 2081 6.881065 TGATATTAACCTCATAGATGCCAAGC 59.119 38.462 0.00 0.00 0.00 4.01
2034 2159 6.260936 GTGGATTGTAGAAACTCATGTATGGG 59.739 42.308 0.00 0.00 0.00 4.00
2061 2186 9.628500 AAAAAGAAAGGACATATAGATGTACCC 57.372 33.333 9.13 4.72 46.88 3.69
2183 2312 1.896220 ATTGCTGGAAGTTTGCTCGA 58.104 45.000 0.00 0.00 35.30 4.04
2187 2316 9.918630 ATATGAAATATATTGCTGGAAGTTTGC 57.081 29.630 5.03 0.00 37.86 3.68
2212 2341 5.409890 GCTGGAAGTTTGCTTGAGCACAT 62.410 47.826 4.95 0.00 44.25 3.21
2220 2349 7.839907 TGAAATATATTGCTGGAAGTTTGCTT 58.160 30.769 5.03 0.00 37.71 3.91
2222 2351 9.918630 ATATGAAATATATTGCTGGAAGTTTGC 57.081 29.630 5.03 0.00 37.86 3.68
2245 2374 7.341822 GCTGGAAGTTTGCTTGAGCACATAT 62.342 44.000 4.95 0.00 44.25 1.78
2246 2375 6.105156 GCTGGAAGTTTGCTTGAGCACATA 62.105 45.833 4.95 0.00 44.25 2.29
2247 2376 5.409890 GCTGGAAGTTTGCTTGAGCACAT 62.410 47.826 4.95 0.00 44.25 3.21
2248 2377 4.156313 GCTGGAAGTTTGCTTGAGCACA 62.156 50.000 4.95 0.00 44.25 4.57
2249 2378 1.601412 GCTGGAAGTTTGCTTGAGCAC 60.601 52.381 4.95 0.00 44.25 4.40
2250 2379 0.670162 GCTGGAAGTTTGCTTGAGCA 59.330 50.000 0.68 0.68 43.28 4.26
2251 2380 0.670162 TGCTGGAAGTTTGCTTGAGC 59.330 50.000 0.00 0.00 37.34 4.26
2252 2381 3.655276 ATTGCTGGAAGTTTGCTTGAG 57.345 42.857 0.00 0.00 34.61 3.02
2253 2382 7.408756 AATATATTGCTGGAAGTTTGCTTGA 57.591 32.000 0.00 0.00 34.61 3.02
2254 2383 7.760794 TGAAATATATTGCTGGAAGTTTGCTTG 59.239 33.333 5.03 0.00 34.61 4.01
2255 2384 7.839907 TGAAATATATTGCTGGAAGTTTGCTT 58.160 30.769 5.03 0.00 37.71 3.91
2256 2385 7.408756 TGAAATATATTGCTGGAAGTTTGCT 57.591 32.000 5.03 0.00 35.30 3.91
2257 2386 9.918630 ATATGAAATATATTGCTGGAAGTTTGC 57.081 29.630 5.03 0.00 37.86 3.68
2261 2390 8.517878 GCACATATGAAATATATTGCTGGAAGT 58.482 33.333 10.38 0.00 41.14 3.01
2262 2391 8.906636 GCACATATGAAATATATTGCTGGAAG 57.093 34.615 10.38 0.00 41.14 3.46
2268 2397 8.390854 GCTTGAGCACATATGAAATATATTGC 57.609 34.615 10.38 6.15 43.07 3.56
2286 2415 5.880054 TGTTATAGGAAGTTTGCTTGAGC 57.120 39.130 0.00 0.00 42.50 4.26
2287 2416 6.599244 TCCATGTTATAGGAAGTTTGCTTGAG 59.401 38.462 0.00 0.00 34.61 3.02
2288 2417 6.480763 TCCATGTTATAGGAAGTTTGCTTGA 58.519 36.000 0.00 0.00 34.61 3.02
2289 2418 6.757897 TCCATGTTATAGGAAGTTTGCTTG 57.242 37.500 0.00 0.00 34.61 4.01
2290 2419 6.547510 GGATCCATGTTATAGGAAGTTTGCTT 59.452 38.462 6.95 0.00 37.48 3.91
2291 2420 6.064717 GGATCCATGTTATAGGAAGTTTGCT 58.935 40.000 6.95 0.00 37.48 3.91
2292 2421 6.064717 AGGATCCATGTTATAGGAAGTTTGC 58.935 40.000 15.82 0.00 37.48 3.68
2293 2422 6.425114 CGAGGATCCATGTTATAGGAAGTTTG 59.575 42.308 15.82 0.00 37.48 2.93
2294 2423 6.326583 TCGAGGATCCATGTTATAGGAAGTTT 59.673 38.462 15.82 0.00 37.48 2.66
2295 2424 5.839063 TCGAGGATCCATGTTATAGGAAGTT 59.161 40.000 15.82 0.00 37.48 2.66
2296 2425 5.394738 TCGAGGATCCATGTTATAGGAAGT 58.605 41.667 15.82 0.00 37.48 3.01
2297 2426 5.984695 TCGAGGATCCATGTTATAGGAAG 57.015 43.478 15.82 0.00 37.48 3.46
2298 2427 6.270000 ACATTCGAGGATCCATGTTATAGGAA 59.730 38.462 15.82 4.03 33.06 3.36
2299 2428 5.780282 ACATTCGAGGATCCATGTTATAGGA 59.220 40.000 15.82 0.00 33.06 2.94
2300 2429 6.042638 ACATTCGAGGATCCATGTTATAGG 57.957 41.667 15.82 0.00 33.06 2.57
2301 2430 8.088365 TGTAACATTCGAGGATCCATGTTATAG 58.912 37.037 26.13 9.85 43.72 1.31
2302 2431 7.870954 GTGTAACATTCGAGGATCCATGTTATA 59.129 37.037 26.13 22.84 43.72 0.98
2303 2432 6.706270 GTGTAACATTCGAGGATCCATGTTAT 59.294 38.462 26.13 12.62 43.72 1.89
2304 2433 6.046593 GTGTAACATTCGAGGATCCATGTTA 58.953 40.000 22.40 22.40 41.30 2.41
2305 2434 4.876107 GTGTAACATTCGAGGATCCATGTT 59.124 41.667 23.94 23.94 43.81 2.71
2306 2435 4.442706 GTGTAACATTCGAGGATCCATGT 58.557 43.478 15.82 11.96 37.17 3.21
2307 2436 3.809832 GGTGTAACATTCGAGGATCCATG 59.190 47.826 15.82 11.27 39.98 3.66
2355 2485 2.443255 AGGGGATGCCACGATAAATCTT 59.557 45.455 5.30 0.00 28.26 2.40
2357 2487 2.568623 AGGGGATGCCACGATAAATC 57.431 50.000 5.30 0.00 28.26 2.17
2367 2498 3.007831 TGTGATTTCAAAAAGGGGATGCC 59.992 43.478 0.00 0.00 0.00 4.40
2400 2532 5.426833 AGGTCTCAGCCATTCTGTAAGTATT 59.573 40.000 0.00 0.00 43.32 1.89
2404 2536 3.902881 AGGTCTCAGCCATTCTGTAAG 57.097 47.619 0.00 0.00 43.32 2.34
2449 2581 6.017275 CCATACCTTTAAGACTACTCGATCGT 60.017 42.308 15.94 0.00 0.00 3.73
2450 2582 6.372185 CCATACCTTTAAGACTACTCGATCG 58.628 44.000 9.36 9.36 0.00 3.69
2455 2587 4.407945 TGGCCCATACCTTTAAGACTACTC 59.592 45.833 0.00 0.00 0.00 2.59
2457 2589 4.163649 AGTGGCCCATACCTTTAAGACTAC 59.836 45.833 0.00 0.00 0.00 2.73
2470 2602 2.195727 TGTTGATGAGAGTGGCCCATA 58.804 47.619 0.00 0.00 0.00 2.74
2472 2604 0.770499 TTGTTGATGAGAGTGGCCCA 59.230 50.000 0.00 0.00 0.00 5.36
2484 2616 7.939039 TCCAAGTTAGTCATCTTTCTTGTTGAT 59.061 33.333 0.00 0.00 34.62 2.57
2499 2631 2.338500 CTTGTCGCCTCCAAGTTAGTC 58.662 52.381 0.00 0.00 35.63 2.59
2514 2646 7.365741 ACATGATTCATCAAAAGACACTTGTC 58.634 34.615 0.00 0.77 41.68 3.18
2520 2652 6.711645 TGAGTGACATGATTCATCAAAAGACA 59.288 34.615 0.00 0.00 40.69 3.41
2564 2737 5.246203 ACATGGAACTGTCAAGCTTACTAGA 59.754 40.000 0.00 0.00 0.00 2.43
2580 2753 2.224018 ACATGCCAACAACACATGGAAC 60.224 45.455 0.00 0.00 44.32 3.62
2585 2758 1.702182 TGGACATGCCAACAACACAT 58.298 45.000 6.42 0.00 45.87 3.21
2602 2775 3.067180 ACATAATTCATTCGCCTGCTTGG 59.933 43.478 0.00 0.00 39.35 3.61
2604 2777 4.158394 ACAACATAATTCATTCGCCTGCTT 59.842 37.500 0.00 0.00 0.00 3.91
2646 2819 7.335422 ACCAAAAATCACAAAGTTAATGTTGCA 59.665 29.630 0.00 0.00 0.00 4.08
2701 2874 8.734386 AGTTCAAATGGAAAGACTAAGCTATTG 58.266 33.333 0.00 0.00 37.23 1.90
2703 2876 8.325046 AGAGTTCAAATGGAAAGACTAAGCTAT 58.675 33.333 0.00 0.00 37.23 2.97
2734 2907 8.677148 AACTAGATCAAAAGAAGTAGTGCAAA 57.323 30.769 0.00 0.00 0.00 3.68
2759 2932 8.786898 CACATCTTTTGAGAGACCAATTTAGAA 58.213 33.333 0.00 0.00 0.00 2.10
2774 2948 7.748691 TTCTCATCAATGTCACATCTTTTGA 57.251 32.000 0.00 0.00 0.00 2.69
2775 2949 8.806177 TTTTCTCATCAATGTCACATCTTTTG 57.194 30.769 0.00 0.00 0.00 2.44
2824 2998 8.035394 TCATGTCTTAGACAATAGAAACCACTC 58.965 37.037 19.42 0.00 45.96 3.51
2860 3034 0.171903 GCGAGCCATCATGCAAAACT 59.828 50.000 0.00 0.00 0.00 2.66
2908 3082 6.827727 ACCACAGAAACATGTACTCTACTTT 58.172 36.000 0.00 0.00 0.00 2.66
2970 3145 7.308589 CCCGGCTCAAGATTTTACTTTATATGG 60.309 40.741 0.00 0.00 0.00 2.74
2976 3151 4.028993 TCCCGGCTCAAGATTTTACTTT 57.971 40.909 0.00 0.00 0.00 2.66


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.