Multiple sequence alignment - TraesCS5B01G546400

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G546400 chr5B 100.000 3737 0 0 1 3737 699392806 699389070 0.000000e+00 6902.0
1 TraesCS5B01G546400 chr5B 90.458 2138 135 28 346 2468 703502741 703500658 0.000000e+00 2754.0
2 TraesCS5B01G546400 chr5B 88.064 377 23 9 2506 2865 703500656 703500285 9.590000e-116 427.0
3 TraesCS5B01G546400 chr5B 71.313 1234 260 63 1057 2253 699260115 699261291 8.070000e-57 231.0
4 TraesCS5B01G546400 chr5B 79.300 343 56 10 1880 2217 677812881 677813213 3.760000e-55 226.0
5 TraesCS5B01G546400 chr5B 76.923 377 72 8 1873 2242 685500301 685500669 2.280000e-47 200.0
6 TraesCS5B01G546400 chr5B 92.481 133 10 0 174 306 42698011 42698143 1.370000e-44 191.0
7 TraesCS5B01G546400 chr5B 89.189 148 14 2 155 301 557532312 557532166 2.290000e-42 183.0
8 TraesCS5B01G546400 chr5B 87.898 157 13 5 151 302 705040445 705040290 2.970000e-41 180.0
9 TraesCS5B01G546400 chr5D 93.895 1720 84 12 743 2462 551086915 551085217 0.000000e+00 2575.0
10 TraesCS5B01G546400 chr5D 88.000 375 25 11 2504 2862 551085206 551084836 3.450000e-115 425.0
11 TraesCS5B01G546400 chr5D 71.910 1246 240 66 1057 2253 552051620 552050436 1.030000e-65 261.0
12 TraesCS5B01G546400 chr5D 78.873 355 65 5 1864 2216 552457594 552457248 8.070000e-57 231.0
13 TraesCS5B01G546400 chr5D 78.852 331 59 7 1057 1383 552422772 552422449 2.920000e-51 213.0
14 TraesCS5B01G546400 chr5D 82.845 239 36 4 1982 2217 537216911 537217147 3.780000e-50 209.0
15 TraesCS5B01G546400 chr5D 87.349 166 15 4 400 560 551087093 551086929 6.370000e-43 185.0
16 TraesCS5B01G546400 chr5D 78.924 223 39 6 1013 1229 552405545 552405325 1.080000e-30 145.0
17 TraesCS5B01G546400 chr5D 92.157 51 2 2 127 177 551088211 551088163 1.860000e-08 71.3
18 TraesCS5B01G546400 chr5D 82.857 70 8 3 1488 1555 552405092 552405025 4.030000e-05 60.2
19 TraesCS5B01G546400 chr2A 92.247 761 57 2 2977 3735 12319351 12318591 0.000000e+00 1077.0
20 TraesCS5B01G546400 chr4A 92.087 733 31 6 680 1402 616864999 616865714 0.000000e+00 1007.0
21 TraesCS5B01G546400 chr4A 93.760 625 36 1 1496 2117 616865754 616866378 0.000000e+00 935.0
22 TraesCS5B01G546400 chr4A 88.506 348 20 11 2115 2462 616866460 616866787 1.620000e-108 403.0
23 TraesCS5B01G546400 chr4A 88.782 312 15 5 2504 2799 616866798 616867105 7.630000e-97 364.0
24 TraesCS5B01G546400 chr4A 80.055 366 62 6 1880 2243 632940133 632940489 1.030000e-65 261.0
25 TraesCS5B01G546400 chr4A 95.000 100 5 0 457 556 616864862 616864961 1.390000e-34 158.0
26 TraesCS5B01G546400 chr4B 87.329 805 62 25 2965 3737 82414046 82414842 0.000000e+00 885.0
27 TraesCS5B01G546400 chr6A 86.979 791 73 15 2977 3737 613042075 613041285 0.000000e+00 863.0
28 TraesCS5B01G546400 chr6A 94.815 135 7 0 3603 3737 612887353 612887219 1.050000e-50 211.0
29 TraesCS5B01G546400 chr1D 91.015 601 48 6 2988 3587 52678713 52679308 0.000000e+00 806.0
30 TraesCS5B01G546400 chr1B 88.961 616 63 3 2977 3587 453819166 453819781 0.000000e+00 756.0
31 TraesCS5B01G546400 chr2B 86.342 637 57 16 2977 3583 29130611 29131247 0.000000e+00 667.0
32 TraesCS5B01G546400 chr2B 93.333 135 8 1 168 302 210262834 210262701 8.190000e-47 198.0
33 TraesCS5B01G546400 chr1A 84.411 603 66 15 3005 3581 372221286 372220686 5.420000e-158 568.0
34 TraesCS5B01G546400 chr1A 93.750 128 8 0 174 301 548441703 548441576 3.810000e-45 193.0
35 TraesCS5B01G546400 chr1A 91.367 139 12 0 166 304 24469145 24469007 1.370000e-44 191.0
36 TraesCS5B01G546400 chr1A 91.304 138 12 0 170 307 574666421 574666558 4.930000e-44 189.0
37 TraesCS5B01G546400 chr7D 89.135 451 45 4 2972 3419 477407938 477408387 3.260000e-155 558.0
38 TraesCS5B01G546400 chr2D 94.100 339 17 3 3400 3737 53583496 53583832 2.570000e-141 512.0
39 TraesCS5B01G546400 chr7A 90.601 383 32 4 3202 3581 220111961 220112342 4.310000e-139 505.0
40 TraesCS5B01G546400 chr7A 93.927 247 15 0 3491 3737 164427127 164426881 1.270000e-99 374.0
41 TraesCS5B01G546400 chr7B 91.185 363 31 1 2978 3339 576677828 576677466 3.350000e-135 492.0
42 TraesCS5B01G546400 chr6B 93.893 131 7 1 171 301 40715988 40715859 2.940000e-46 196.0
43 TraesCS5B01G546400 chr6B 90.071 141 12 2 162 301 159990652 159990513 8.250000e-42 182.0
44 TraesCS5B01G546400 chr3A 87.255 102 12 1 3637 3737 527894826 527894927 8.480000e-22 115.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G546400 chr5B 699389070 699392806 3736 True 6902.000 6902 100.00000 1 3737 1 chr5B.!!$R2 3736
1 TraesCS5B01G546400 chr5B 703500285 703502741 2456 True 1590.500 2754 89.26100 346 2865 2 chr5B.!!$R4 2519
2 TraesCS5B01G546400 chr5B 699260115 699261291 1176 False 231.000 231 71.31300 1057 2253 1 chr5B.!!$F4 1196
3 TraesCS5B01G546400 chr5D 551084836 551088211 3375 True 814.075 2575 90.35025 127 2862 4 chr5D.!!$R4 2735
4 TraesCS5B01G546400 chr5D 552050436 552051620 1184 True 261.000 261 71.91000 1057 2253 1 chr5D.!!$R1 1196
5 TraesCS5B01G546400 chr2A 12318591 12319351 760 True 1077.000 1077 92.24700 2977 3735 1 chr2A.!!$R1 758
6 TraesCS5B01G546400 chr4A 616864862 616867105 2243 False 573.400 1007 91.62700 457 2799 5 chr4A.!!$F2 2342
7 TraesCS5B01G546400 chr4B 82414046 82414842 796 False 885.000 885 87.32900 2965 3737 1 chr4B.!!$F1 772
8 TraesCS5B01G546400 chr6A 613041285 613042075 790 True 863.000 863 86.97900 2977 3737 1 chr6A.!!$R2 760
9 TraesCS5B01G546400 chr1D 52678713 52679308 595 False 806.000 806 91.01500 2988 3587 1 chr1D.!!$F1 599
10 TraesCS5B01G546400 chr1B 453819166 453819781 615 False 756.000 756 88.96100 2977 3587 1 chr1B.!!$F1 610
11 TraesCS5B01G546400 chr2B 29130611 29131247 636 False 667.000 667 86.34200 2977 3583 1 chr2B.!!$F1 606
12 TraesCS5B01G546400 chr1A 372220686 372221286 600 True 568.000 568 84.41100 3005 3581 1 chr1A.!!$R2 576

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
192 193 0.032813 ATACTCCCTCCGTCCGGAAA 60.033 55.0 5.23 0.00 44.66 3.13 F
194 195 0.032813 ACTCCCTCCGTCCGGAAATA 60.033 55.0 5.23 0.00 44.66 1.40 F
196 197 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.0 5.23 0.00 44.66 2.12 F
303 304 0.038744 TCCGGACGGAAAGAGTACCT 59.961 55.0 11.57 0.00 42.05 3.08 F
315 316 0.106116 GAGTACCTCAGATCGGGGGT 60.106 60.0 21.69 21.69 36.02 4.95 F
1930 2960 0.319813 GGTTTGCACAAGTGGATGGC 60.320 55.0 2.00 0.00 0.00 4.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1448 2433 0.181114 CATCCATCGGGCTTCTCCAA 59.819 55.000 0.00 0.0 36.21 3.53 R
1692 2722 0.381445 TTCCGGAATGAATGCATGCG 59.619 50.000 14.35 0.0 34.26 4.73 R
1891 2921 1.414245 CCCAAATTGCCATCCCCCATA 60.414 52.381 0.00 0.0 0.00 2.74 R
1936 2966 2.906389 TGAGCTTGACCATAGGTTGAGT 59.094 45.455 0.00 0.0 35.25 3.41 R
2093 3129 3.110705 AGATGCCAAGGTCTGTAGTGAT 58.889 45.455 0.00 0.0 0.00 3.06 R
3361 4528 0.175073 AATTAGACGCGGTGGGAGAC 59.825 55.000 12.47 0.0 0.00 3.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 42 8.940768 ATTATTTTTAAATGCCATGTAACGCT 57.059 26.923 0.00 0.00 0.00 5.07
43 44 7.985634 ATTTTTAAATGCCATGTAACGCTAG 57.014 32.000 0.00 0.00 0.00 3.42
44 45 6.503589 TTTTAAATGCCATGTAACGCTAGT 57.496 33.333 0.00 0.00 0.00 2.57
45 46 6.503589 TTTAAATGCCATGTAACGCTAGTT 57.496 33.333 0.00 0.00 43.95 2.24
46 47 6.503589 TTAAATGCCATGTAACGCTAGTTT 57.496 33.333 0.00 0.00 41.49 2.66
47 48 5.385509 AAATGCCATGTAACGCTAGTTTT 57.614 34.783 0.00 0.00 41.49 2.43
48 49 3.822594 TGCCATGTAACGCTAGTTTTG 57.177 42.857 0.00 0.00 41.49 2.44
49 50 3.142951 TGCCATGTAACGCTAGTTTTGT 58.857 40.909 0.00 0.00 41.49 2.83
50 51 3.566322 TGCCATGTAACGCTAGTTTTGTT 59.434 39.130 0.00 0.00 41.49 2.83
51 52 4.036971 TGCCATGTAACGCTAGTTTTGTTT 59.963 37.500 0.00 0.00 41.49 2.83
52 53 4.979815 GCCATGTAACGCTAGTTTTGTTTT 59.020 37.500 0.00 0.00 41.49 2.43
53 54 5.108027 GCCATGTAACGCTAGTTTTGTTTTG 60.108 40.000 0.00 0.00 41.49 2.44
54 55 5.974751 CCATGTAACGCTAGTTTTGTTTTGT 59.025 36.000 0.00 0.00 41.49 2.83
55 56 6.474102 CCATGTAACGCTAGTTTTGTTTTGTT 59.526 34.615 0.00 0.00 41.49 2.83
56 57 7.009723 CCATGTAACGCTAGTTTTGTTTTGTTT 59.990 33.333 0.00 0.00 41.49 2.83
57 58 7.870588 TGTAACGCTAGTTTTGTTTTGTTTT 57.129 28.000 0.00 0.00 41.49 2.43
58 59 8.961294 TGTAACGCTAGTTTTGTTTTGTTTTA 57.039 26.923 0.00 0.00 41.49 1.52
59 60 9.403110 TGTAACGCTAGTTTTGTTTTGTTTTAA 57.597 25.926 0.00 0.00 41.49 1.52
62 63 8.523523 ACGCTAGTTTTGTTTTGTTTTAAACT 57.476 26.923 9.33 0.00 40.81 2.66
63 64 9.623350 ACGCTAGTTTTGTTTTGTTTTAAACTA 57.377 25.926 9.33 0.00 39.17 2.24
64 65 9.875660 CGCTAGTTTTGTTTTGTTTTAAACTAC 57.124 29.630 9.33 5.60 39.17 2.73
108 109 4.713824 AATGTCATCTGCTGAACAATGG 57.286 40.909 0.00 0.00 35.07 3.16
109 110 2.439409 TGTCATCTGCTGAACAATGGG 58.561 47.619 0.00 0.00 35.07 4.00
110 111 1.747355 GTCATCTGCTGAACAATGGGG 59.253 52.381 0.00 0.00 35.07 4.96
111 112 1.108776 CATCTGCTGAACAATGGGGG 58.891 55.000 0.00 0.00 0.00 5.40
112 113 1.002069 ATCTGCTGAACAATGGGGGA 58.998 50.000 0.00 0.00 0.00 4.81
113 114 0.329261 TCTGCTGAACAATGGGGGAG 59.671 55.000 0.00 0.00 0.00 4.30
114 115 1.304381 TGCTGAACAATGGGGGAGC 60.304 57.895 0.00 0.00 0.00 4.70
115 116 2.054453 GCTGAACAATGGGGGAGCC 61.054 63.158 0.00 0.00 0.00 4.70
116 117 1.693640 CTGAACAATGGGGGAGCCT 59.306 57.895 0.00 0.00 0.00 4.58
117 118 0.682209 CTGAACAATGGGGGAGCCTG 60.682 60.000 0.00 0.00 0.00 4.85
118 119 1.380380 GAACAATGGGGGAGCCTGG 60.380 63.158 0.00 0.00 0.00 4.45
119 120 2.861271 GAACAATGGGGGAGCCTGGG 62.861 65.000 0.00 0.00 0.00 4.45
120 121 3.023116 CAATGGGGGAGCCTGGGA 61.023 66.667 0.00 0.00 0.00 4.37
121 122 2.046855 AATGGGGGAGCCTGGGAT 59.953 61.111 0.00 0.00 0.00 3.85
122 123 2.087461 AATGGGGGAGCCTGGGATC 61.087 63.158 0.00 0.00 0.00 3.36
123 124 2.590411 AATGGGGGAGCCTGGGATCT 62.590 60.000 4.86 0.00 0.00 2.75
124 125 1.689124 ATGGGGGAGCCTGGGATCTA 61.689 60.000 4.86 0.00 0.00 1.98
125 126 1.537643 GGGGGAGCCTGGGATCTAG 60.538 68.421 4.86 0.00 0.00 2.43
126 127 1.537643 GGGGAGCCTGGGATCTAGG 60.538 68.421 10.96 10.96 38.39 3.02
127 128 1.237458 GGGAGCCTGGGATCTAGGT 59.763 63.158 15.07 5.39 37.64 3.08
128 129 0.834261 GGGAGCCTGGGATCTAGGTC 60.834 65.000 15.07 0.00 37.64 3.85
129 130 0.189822 GGAGCCTGGGATCTAGGTCT 59.810 60.000 15.07 12.70 37.64 3.85
130 131 1.627864 GAGCCTGGGATCTAGGTCTC 58.372 60.000 15.07 15.94 37.64 3.36
131 132 0.189822 AGCCTGGGATCTAGGTCTCC 59.810 60.000 0.00 2.02 37.64 3.71
132 133 0.105453 GCCTGGGATCTAGGTCTCCA 60.105 60.000 0.00 6.72 37.64 3.86
133 134 2.008242 CCTGGGATCTAGGTCTCCAG 57.992 60.000 23.64 23.64 43.26 3.86
134 135 1.337118 CTGGGATCTAGGTCTCCAGC 58.663 60.000 20.83 0.00 38.55 4.85
135 136 0.636647 TGGGATCTAGGTCTCCAGCA 59.363 55.000 0.00 0.00 32.90 4.41
136 137 1.008327 TGGGATCTAGGTCTCCAGCAA 59.992 52.381 0.00 0.00 32.90 3.91
172 173 8.946085 TGATGTGGTGTTTTGATTCTCTAATAC 58.054 33.333 0.00 0.00 0.00 1.89
173 174 8.862325 ATGTGGTGTTTTGATTCTCTAATACA 57.138 30.769 0.00 0.00 0.00 2.29
174 175 8.862325 TGTGGTGTTTTGATTCTCTAATACAT 57.138 30.769 0.00 0.00 0.00 2.29
175 176 9.952030 TGTGGTGTTTTGATTCTCTAATACATA 57.048 29.630 0.00 0.00 0.00 2.29
180 181 9.832445 TGTTTTGATTCTCTAATACATACTCCC 57.168 33.333 0.00 0.00 0.00 4.30
183 184 8.423906 TTGATTCTCTAATACATACTCCCTCC 57.576 38.462 0.00 0.00 0.00 4.30
186 187 5.558818 TCTCTAATACATACTCCCTCCGTC 58.441 45.833 0.00 0.00 0.00 4.79
187 188 4.660168 TCTAATACATACTCCCTCCGTCC 58.340 47.826 0.00 0.00 0.00 4.79
188 189 1.906990 ATACATACTCCCTCCGTCCG 58.093 55.000 0.00 0.00 0.00 4.79
189 190 0.179009 TACATACTCCCTCCGTCCGG 60.179 60.000 0.00 0.00 0.00 5.14
190 191 1.152819 CATACTCCCTCCGTCCGGA 60.153 63.158 0.00 0.00 42.90 5.14
191 192 0.754217 CATACTCCCTCCGTCCGGAA 60.754 60.000 5.23 0.00 44.66 4.30
192 193 0.032813 ATACTCCCTCCGTCCGGAAA 60.033 55.000 5.23 0.00 44.66 3.13
193 194 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.000 5.23 0.00 44.66 2.17
194 195 0.032813 ACTCCCTCCGTCCGGAAATA 60.033 55.000 5.23 0.00 44.66 1.40
195 196 0.388294 CTCCCTCCGTCCGGAAATAC 59.612 60.000 5.23 0.00 44.66 1.89
196 197 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.00 44.66 2.12
197 198 0.828677 CCCTCCGTCCGGAAATACTT 59.171 55.000 5.23 0.00 44.66 2.24
199 200 1.206371 CCTCCGTCCGGAAATACTTGT 59.794 52.381 5.23 0.00 44.66 3.16
200 201 2.537401 CTCCGTCCGGAAATACTTGTC 58.463 52.381 5.23 0.00 44.66 3.18
201 202 1.894466 TCCGTCCGGAAATACTTGTCA 59.106 47.619 5.23 0.00 42.05 3.58
202 203 2.498481 TCCGTCCGGAAATACTTGTCAT 59.502 45.455 5.23 0.00 42.05 3.06
203 204 3.055675 TCCGTCCGGAAATACTTGTCATT 60.056 43.478 5.23 0.00 42.05 2.57
204 205 4.160065 TCCGTCCGGAAATACTTGTCATTA 59.840 41.667 5.23 0.00 42.05 1.90
206 207 5.352016 CCGTCCGGAAATACTTGTCATTAAA 59.648 40.000 5.23 0.00 37.50 1.52
207 208 6.128227 CCGTCCGGAAATACTTGTCATTAAAA 60.128 38.462 5.23 0.00 37.50 1.52
209 210 7.428183 CGTCCGGAAATACTTGTCATTAAAATG 59.572 37.037 5.23 0.00 37.75 2.32
210 211 8.455682 GTCCGGAAATACTTGTCATTAAAATGA 58.544 33.333 5.23 1.23 42.78 2.57
211 212 9.015367 TCCGGAAATACTTGTCATTAAAATGAA 57.985 29.630 0.00 0.00 46.13 2.57
212 213 9.801873 CCGGAAATACTTGTCATTAAAATGAAT 57.198 29.630 6.95 0.00 46.13 2.57
272 273 9.793259 AGATACATTCCTTTTTGTCTACTTTGA 57.207 29.630 0.00 0.00 0.00 2.69
275 276 8.463930 ACATTCCTTTTTGTCTACTTTGATGA 57.536 30.769 0.00 0.00 0.00 2.92
276 277 8.352942 ACATTCCTTTTTGTCTACTTTGATGAC 58.647 33.333 0.00 0.00 0.00 3.06
277 278 7.873719 TTCCTTTTTGTCTACTTTGATGACA 57.126 32.000 0.00 0.00 38.71 3.58
278 279 7.873719 TCCTTTTTGTCTACTTTGATGACAA 57.126 32.000 0.00 0.00 45.31 3.18
279 280 7.930217 TCCTTTTTGTCTACTTTGATGACAAG 58.070 34.615 7.63 0.00 46.72 3.16
280 281 7.556275 TCCTTTTTGTCTACTTTGATGACAAGT 59.444 33.333 7.63 0.00 46.72 3.16
281 282 8.836413 CCTTTTTGTCTACTTTGATGACAAGTA 58.164 33.333 7.63 0.00 46.72 2.24
286 287 8.547967 TGTCTACTTTGATGACAAGTATTTCC 57.452 34.615 0.00 0.00 37.71 3.13
287 288 7.330946 TGTCTACTTTGATGACAAGTATTTCCG 59.669 37.037 0.00 0.00 37.71 4.30
288 289 5.880054 ACTTTGATGACAAGTATTTCCGG 57.120 39.130 0.00 0.00 37.32 5.14
289 290 5.556915 ACTTTGATGACAAGTATTTCCGGA 58.443 37.500 0.00 0.00 37.32 5.14
290 291 5.411669 ACTTTGATGACAAGTATTTCCGGAC 59.588 40.000 1.83 0.00 37.32 4.79
291 292 3.517602 TGATGACAAGTATTTCCGGACG 58.482 45.455 1.83 0.00 0.00 4.79
292 293 2.373540 TGACAAGTATTTCCGGACGG 57.626 50.000 1.83 3.96 0.00 4.79
293 294 1.894466 TGACAAGTATTTCCGGACGGA 59.106 47.619 1.83 9.76 43.52 4.69
302 303 2.571548 TCCGGACGGAAAGAGTACC 58.428 57.895 11.57 0.00 42.05 3.34
303 304 0.038744 TCCGGACGGAAAGAGTACCT 59.961 55.000 11.57 0.00 42.05 3.08
304 305 0.455005 CCGGACGGAAAGAGTACCTC 59.545 60.000 4.40 0.00 37.50 3.85
305 306 1.171308 CGGACGGAAAGAGTACCTCA 58.829 55.000 0.00 0.00 32.06 3.86
306 307 1.132643 CGGACGGAAAGAGTACCTCAG 59.867 57.143 0.00 0.00 32.06 3.35
307 308 2.444421 GGACGGAAAGAGTACCTCAGA 58.556 52.381 0.00 0.00 32.06 3.27
308 309 3.025262 GGACGGAAAGAGTACCTCAGAT 58.975 50.000 0.00 0.00 32.06 2.90
309 310 3.067040 GGACGGAAAGAGTACCTCAGATC 59.933 52.174 0.00 0.00 32.06 2.75
310 311 2.683867 ACGGAAAGAGTACCTCAGATCG 59.316 50.000 0.00 0.00 32.06 3.69
311 312 2.033550 CGGAAAGAGTACCTCAGATCGG 59.966 54.545 0.00 0.00 32.06 4.18
312 313 2.362717 GGAAAGAGTACCTCAGATCGGG 59.637 54.545 0.00 0.00 32.06 5.14
313 314 2.074729 AAGAGTACCTCAGATCGGGG 57.925 55.000 2.39 2.39 32.06 5.73
314 315 0.186386 AGAGTACCTCAGATCGGGGG 59.814 60.000 10.61 10.61 32.06 5.40
315 316 0.106116 GAGTACCTCAGATCGGGGGT 60.106 60.000 21.69 21.69 36.02 4.95
316 317 1.144503 GAGTACCTCAGATCGGGGGTA 59.855 57.143 19.50 19.50 33.74 3.69
317 318 1.787676 AGTACCTCAGATCGGGGGTAT 59.212 52.381 24.97 12.83 36.81 2.73
318 319 2.991713 AGTACCTCAGATCGGGGGTATA 59.008 50.000 24.97 5.60 36.81 1.47
319 320 3.596956 AGTACCTCAGATCGGGGGTATAT 59.403 47.826 24.97 15.30 36.81 0.86
320 321 3.103080 ACCTCAGATCGGGGGTATATC 57.897 52.381 16.62 0.00 0.00 1.63
321 322 2.292323 ACCTCAGATCGGGGGTATATCC 60.292 54.545 16.62 0.00 0.00 2.59
495 1430 5.117745 CAGCGATCACGATCCTTATTGTTAG 59.882 44.000 1.50 0.00 42.66 2.34
527 1464 0.950555 TCAACGAGCCAGCATGTGAC 60.951 55.000 0.00 0.00 0.00 3.67
531 1468 1.812922 GAGCCAGCATGTGACCGAG 60.813 63.158 0.00 0.00 0.00 4.63
556 1493 8.970020 AGTGCACCATCAAATTAGAAATGATAA 58.030 29.630 14.63 0.00 32.73 1.75
557 1494 9.754382 GTGCACCATCAAATTAGAAATGATAAT 57.246 29.630 5.22 0.00 32.73 1.28
558 1495 9.752961 TGCACCATCAAATTAGAAATGATAATG 57.247 29.630 0.00 0.00 32.73 1.90
560 1497 9.976511 CACCATCAAATTAGAAATGATAATGCT 57.023 29.630 0.00 0.00 32.73 3.79
561 1498 9.976511 ACCATCAAATTAGAAATGATAATGCTG 57.023 29.630 0.00 0.00 32.73 4.41
562 1499 9.419297 CCATCAAATTAGAAATGATAATGCTGG 57.581 33.333 0.00 0.00 32.73 4.85
563 1500 9.976511 CATCAAATTAGAAATGATAATGCTGGT 57.023 29.630 0.00 0.00 32.73 4.00
630 1567 1.202830 AGTCAGAGAGAGACGTGGTGT 60.203 52.381 0.00 0.00 40.84 4.16
668 1629 9.631452 CTGAAGGAAGAACAATTATTTCTTTCC 57.369 33.333 13.02 13.90 42.21 3.13
669 1630 8.296713 TGAAGGAAGAACAATTATTTCTTTCCG 58.703 33.333 13.02 0.00 42.21 4.30
670 1631 6.621613 AGGAAGAACAATTATTTCTTTCCGC 58.378 36.000 13.02 3.90 42.21 5.54
671 1632 6.208599 AGGAAGAACAATTATTTCTTTCCGCA 59.791 34.615 13.02 0.00 42.21 5.69
672 1633 6.866248 GGAAGAACAATTATTTCTTTCCGCAA 59.134 34.615 13.02 0.00 42.21 4.85
673 1634 7.383843 GGAAGAACAATTATTTCTTTCCGCAAA 59.616 33.333 13.02 0.00 42.21 3.68
674 1635 8.655651 AAGAACAATTATTTCTTTCCGCAAAA 57.344 26.923 7.96 0.00 39.77 2.44
675 1636 8.655651 AGAACAATTATTTCTTTCCGCAAAAA 57.344 26.923 0.00 0.00 28.36 1.94
734 1696 1.227263 CCTCTAATGTGCCCCGTCG 60.227 63.158 0.00 0.00 0.00 5.12
882 1854 4.082845 CTCAAGGTGAGTCTTCTCCACTA 58.917 47.826 0.00 0.00 39.58 2.74
928 1900 9.401058 TCCTTCATTTCTCTGATTTATCTTTCC 57.599 33.333 0.00 0.00 0.00 3.13
929 1901 9.406113 CCTTCATTTCTCTGATTTATCTTTCCT 57.594 33.333 0.00 0.00 0.00 3.36
977 1950 2.030958 CGTGACAAGTAACCCGCCC 61.031 63.158 0.00 0.00 0.00 6.13
1168 2141 2.363018 CTCAGCCTCCTCACCGGA 60.363 66.667 9.46 0.00 40.30 5.14
1245 2218 2.569853 TCTTTTATTCCTGGCTCCACGA 59.430 45.455 0.00 0.00 0.00 4.35
1270 2246 2.119655 CCCCGACGACGAAGGAGAT 61.120 63.158 9.28 0.00 42.66 2.75
1312 2288 2.666862 ACCACGAAATTCGGCGCA 60.667 55.556 19.95 0.00 45.59 6.09
1327 2303 2.746277 GCACGCATTCCCGAGGTT 60.746 61.111 0.00 0.00 0.00 3.50
1351 2330 2.158957 GGAATGGGACGACTATGAAGCA 60.159 50.000 0.00 0.00 0.00 3.91
1448 2433 0.457851 GACAGGCTGCACGAGATACT 59.542 55.000 15.89 0.00 0.00 2.12
1557 2545 1.871039 CGTCCGTGTGGTCTTTTTCAT 59.129 47.619 0.00 0.00 36.30 2.57
1585 2579 0.597568 ATGGTGATGGTTGTGTTGCG 59.402 50.000 0.00 0.00 0.00 4.85
1692 2722 3.748568 CCTGGTCTTGAACTTGAAGCTAC 59.251 47.826 0.00 0.00 0.00 3.58
1792 2822 6.894682 TGGTGTTTGTGATATGGCTATTCTA 58.105 36.000 0.00 0.00 0.00 2.10
1891 2921 2.158264 CCATTCCTTTATCCCCATGGCT 60.158 50.000 6.09 0.00 0.00 4.75
1930 2960 0.319813 GGTTTGCACAAGTGGATGGC 60.320 55.000 2.00 0.00 0.00 4.40
1936 2966 1.885887 GCACAAGTGGATGGCTTAACA 59.114 47.619 2.00 0.00 0.00 2.41
2001 3031 1.413812 TGCGTCATGGACTCAGCATAT 59.586 47.619 0.00 0.00 0.00 1.78
2086 3122 2.673258 TCCGTGGAAGGCAGTGATATA 58.327 47.619 0.00 0.00 0.00 0.86
2093 3129 6.038161 CGTGGAAGGCAGTGATATAATTTTCA 59.962 38.462 0.00 0.00 0.00 2.69
2095 3131 8.078596 GTGGAAGGCAGTGATATAATTTTCATC 58.921 37.037 0.00 0.00 0.00 2.92
2170 3290 3.196685 AGCTATGGAAGAGCGAGAAGTTT 59.803 43.478 0.00 0.00 44.98 2.66
2227 3353 9.667107 AATCCACAAGGTATATTTATATGTCCG 57.333 33.333 0.00 0.00 35.89 4.79
2280 3406 3.771577 AATAATAAGCCCTCTGTCCCG 57.228 47.619 0.00 0.00 0.00 5.14
2297 3423 1.067776 CCCGAAGTAAGTGTCGCTCTT 60.068 52.381 0.00 0.00 35.93 2.85
2298 3424 2.609737 CCCGAAGTAAGTGTCGCTCTTT 60.610 50.000 0.00 0.00 35.93 2.52
2299 3425 3.057734 CCGAAGTAAGTGTCGCTCTTTT 58.942 45.455 0.00 0.00 35.93 2.27
2301 3427 4.323868 CCGAAGTAAGTGTCGCTCTTTTAG 59.676 45.833 0.00 0.00 35.93 1.85
2303 3429 5.628193 CGAAGTAAGTGTCGCTCTTTTAGAA 59.372 40.000 0.00 0.00 0.00 2.10
2305 3431 6.952935 AGTAAGTGTCGCTCTTTTAGAATG 57.047 37.500 0.00 0.00 0.00 2.67
2306 3432 5.869888 AGTAAGTGTCGCTCTTTTAGAATGG 59.130 40.000 0.00 0.00 0.00 3.16
2308 3434 5.091261 AGTGTCGCTCTTTTAGAATGGAT 57.909 39.130 0.00 0.00 0.00 3.41
2309 3435 4.872691 AGTGTCGCTCTTTTAGAATGGATG 59.127 41.667 0.00 0.00 0.00 3.51
2310 3436 4.034510 GTGTCGCTCTTTTAGAATGGATGG 59.965 45.833 0.00 0.00 0.00 3.51
2311 3437 4.081142 TGTCGCTCTTTTAGAATGGATGGA 60.081 41.667 0.00 0.00 0.00 3.41
2312 3438 4.509600 GTCGCTCTTTTAGAATGGATGGAG 59.490 45.833 0.00 0.00 0.00 3.86
2313 3439 4.162320 TCGCTCTTTTAGAATGGATGGAGT 59.838 41.667 0.00 0.00 0.00 3.85
2314 3440 5.362717 TCGCTCTTTTAGAATGGATGGAGTA 59.637 40.000 0.00 0.00 0.00 2.59
2315 3441 6.049149 CGCTCTTTTAGAATGGATGGAGTAA 58.951 40.000 0.00 0.00 0.00 2.24
2329 3455 8.664669 TGGATGGAGTAATATATCAGTTAGCA 57.335 34.615 0.00 0.00 0.00 3.49
2330 3456 9.100197 TGGATGGAGTAATATATCAGTTAGCAA 57.900 33.333 0.00 0.00 0.00 3.91
2331 3457 9.944376 GGATGGAGTAATATATCAGTTAGCAAA 57.056 33.333 0.00 0.00 0.00 3.68
2428 3554 7.001674 TCAAGAAAACTTTGAGGGCTATGTAA 58.998 34.615 0.00 0.00 31.35 2.41
2437 3563 8.157476 ACTTTGAGGGCTATGTAATATACTTGG 58.843 37.037 0.00 0.00 0.00 3.61
2458 3584 8.258708 ACTTGGATGTTACACCTAGTTATTCTC 58.741 37.037 12.23 0.00 38.61 2.87
2463 3589 6.346096 TGTTACACCTAGTTATTCTCATGCC 58.654 40.000 0.00 0.00 0.00 4.40
2464 3590 6.156256 TGTTACACCTAGTTATTCTCATGCCT 59.844 38.462 0.00 0.00 0.00 4.75
2465 3591 7.343574 TGTTACACCTAGTTATTCTCATGCCTA 59.656 37.037 0.00 0.00 0.00 3.93
2467 3593 5.070580 ACACCTAGTTATTCTCATGCCTACC 59.929 44.000 0.00 0.00 0.00 3.18
2470 3596 7.015292 CACCTAGTTATTCTCATGCCTACCTAA 59.985 40.741 0.00 0.00 0.00 2.69
2471 3597 7.735321 ACCTAGTTATTCTCATGCCTACCTAAT 59.265 37.037 0.00 0.00 0.00 1.73
2472 3598 8.598041 CCTAGTTATTCTCATGCCTACCTAATT 58.402 37.037 0.00 0.00 0.00 1.40
2473 3599 9.429359 CTAGTTATTCTCATGCCTACCTAATTG 57.571 37.037 0.00 0.00 0.00 2.32
2474 3600 7.227156 AGTTATTCTCATGCCTACCTAATTGG 58.773 38.462 0.00 0.00 42.93 3.16
2488 3614 7.599998 CCTACCTAATTGGCAATTTTATCATGC 59.400 37.037 28.56 0.00 40.22 4.06
2498 3624 7.781548 GCAATTTTATCATGCCATTCTTCTT 57.218 32.000 0.00 0.00 34.03 2.52
2499 3625 8.205131 GCAATTTTATCATGCCATTCTTCTTT 57.795 30.769 0.00 0.00 34.03 2.52
2500 3626 8.671028 GCAATTTTATCATGCCATTCTTCTTTT 58.329 29.630 0.00 0.00 34.03 2.27
2573 3699 5.357742 TGAAGCTCATTGATGGCTTAGTA 57.642 39.130 11.78 2.05 41.24 1.82
2600 3740 4.233632 TGTGGCCACTATCATCAATTGA 57.766 40.909 34.75 11.26 39.12 2.57
2685 3826 3.679389 TGGTGCAATGGTGTTTGTTTTT 58.321 36.364 0.00 0.00 0.00 1.94
2744 3885 1.506262 CGGTGTTAAGTGGCATGCC 59.494 57.895 30.54 30.54 0.00 4.40
2759 3900 1.271840 ATGCCTAAGCGGGTGAAGGA 61.272 55.000 11.78 0.28 44.31 3.36
2760 3901 1.271840 TGCCTAAGCGGGTGAAGGAT 61.272 55.000 11.78 0.00 44.31 3.24
2762 3903 4.641939 TGCCTAAGCGGGTGAAGGATTC 62.642 54.545 11.78 0.00 44.40 2.52
2805 3946 5.717078 ACTAGTTGTCACAGGATTTACGA 57.283 39.130 0.00 0.00 0.00 3.43
2811 3952 4.503910 TGTCACAGGATTTACGAATGGAG 58.496 43.478 0.00 0.00 0.00 3.86
2828 3969 1.270893 GGAGAGAGCCAACCGACTTTT 60.271 52.381 0.00 0.00 0.00 2.27
2840 3982 6.149633 CCAACCGACTTTTATCTTTTTCCTG 58.850 40.000 0.00 0.00 0.00 3.86
2871 4013 8.450578 TGAAATGTCATATCTTGTAATCCACC 57.549 34.615 0.00 0.00 0.00 4.61
2872 4014 7.226523 TGAAATGTCATATCTTGTAATCCACCG 59.773 37.037 0.00 0.00 0.00 4.94
2873 4015 4.956085 TGTCATATCTTGTAATCCACCGG 58.044 43.478 0.00 0.00 0.00 5.28
2874 4016 4.651962 TGTCATATCTTGTAATCCACCGGA 59.348 41.667 9.46 0.00 35.55 5.14
2875 4017 5.306937 TGTCATATCTTGTAATCCACCGGAT 59.693 40.000 9.46 0.00 45.46 4.18
2876 4018 6.495526 TGTCATATCTTGTAATCCACCGGATA 59.504 38.462 9.46 0.00 42.27 2.59
2877 4019 6.812160 GTCATATCTTGTAATCCACCGGATAC 59.188 42.308 9.46 3.86 42.27 2.24
2878 4020 6.495526 TCATATCTTGTAATCCACCGGATACA 59.504 38.462 9.46 6.59 42.27 2.29
2879 4021 5.825593 ATCTTGTAATCCACCGGATACAT 57.174 39.130 9.46 0.00 42.27 2.29
2880 4022 5.623956 TCTTGTAATCCACCGGATACATT 57.376 39.130 9.46 3.08 42.27 2.71
2881 4023 5.996644 TCTTGTAATCCACCGGATACATTT 58.003 37.500 9.46 0.00 42.27 2.32
2882 4024 6.053005 TCTTGTAATCCACCGGATACATTTC 58.947 40.000 9.46 0.00 42.27 2.17
2883 4025 5.360649 TGTAATCCACCGGATACATTTCA 57.639 39.130 9.46 2.06 42.27 2.69
2884 4026 5.935945 TGTAATCCACCGGATACATTTCAT 58.064 37.500 9.46 0.00 42.27 2.57
2885 4027 6.361433 TGTAATCCACCGGATACATTTCATT 58.639 36.000 9.46 0.00 42.27 2.57
2886 4028 7.510407 TGTAATCCACCGGATACATTTCATTA 58.490 34.615 9.46 0.00 42.27 1.90
2887 4029 7.993758 TGTAATCCACCGGATACATTTCATTAA 59.006 33.333 9.46 0.00 42.27 1.40
2888 4030 7.889873 AATCCACCGGATACATTTCATTAAA 57.110 32.000 9.46 0.00 42.27 1.52
2889 4031 6.687081 TCCACCGGATACATTTCATTAAAC 57.313 37.500 9.46 0.00 0.00 2.01
2890 4032 5.591067 TCCACCGGATACATTTCATTAAACC 59.409 40.000 9.46 0.00 0.00 3.27
2891 4033 5.504994 CCACCGGATACATTTCATTAAACCG 60.505 44.000 9.46 0.00 37.98 4.44
2893 4035 5.994887 CGGATACATTTCATTAAACCGGA 57.005 39.130 9.46 0.00 35.24 5.14
2894 4036 6.554334 CGGATACATTTCATTAAACCGGAT 57.446 37.500 9.46 0.00 35.24 4.18
2895 4037 6.370593 CGGATACATTTCATTAAACCGGATG 58.629 40.000 9.46 0.29 35.24 3.51
2896 4038 6.203915 CGGATACATTTCATTAAACCGGATGA 59.796 38.462 9.46 3.42 35.24 2.92
2897 4039 7.094805 CGGATACATTTCATTAAACCGGATGAT 60.095 37.037 9.46 0.00 32.73 2.45
2898 4040 9.226606 GGATACATTTCATTAAACCGGATGATA 57.773 33.333 9.46 2.10 32.73 2.15
2902 4044 9.354673 ACATTTCATTAAACCGGATGATATTCT 57.645 29.630 9.46 0.00 32.73 2.40
2905 4047 7.202016 TCATTAAACCGGATGATATTCTTGC 57.798 36.000 9.46 0.00 0.00 4.01
2906 4048 6.770303 TCATTAAACCGGATGATATTCTTGCA 59.230 34.615 9.46 0.00 0.00 4.08
2907 4049 7.284261 TCATTAAACCGGATGATATTCTTGCAA 59.716 33.333 9.46 0.00 0.00 4.08
2908 4050 5.913137 AAACCGGATGATATTCTTGCAAA 57.087 34.783 9.46 0.00 0.00 3.68
2909 4051 6.469782 AAACCGGATGATATTCTTGCAAAT 57.530 33.333 9.46 0.00 0.00 2.32
2910 4052 7.581213 AAACCGGATGATATTCTTGCAAATA 57.419 32.000 9.46 0.00 0.00 1.40
2911 4053 7.581213 AACCGGATGATATTCTTGCAAATAA 57.419 32.000 9.46 0.00 0.00 1.40
2912 4054 7.206981 ACCGGATGATATTCTTGCAAATAAG 57.793 36.000 9.46 0.00 0.00 1.73
2913 4055 6.998074 ACCGGATGATATTCTTGCAAATAAGA 59.002 34.615 9.46 0.00 35.02 2.10
2914 4056 7.173907 ACCGGATGATATTCTTGCAAATAAGAG 59.826 37.037 9.46 0.00 37.91 2.85
2915 4057 7.173907 CCGGATGATATTCTTGCAAATAAGAGT 59.826 37.037 0.00 0.00 37.91 3.24
2916 4058 8.562892 CGGATGATATTCTTGCAAATAAGAGTT 58.437 33.333 0.00 0.00 37.91 3.01
2924 4066 9.768662 ATTCTTGCAAATAAGAGTTTGAAATGT 57.231 25.926 0.00 0.00 40.64 2.71
2928 4070 8.464770 TGCAAATAAGAGTTTGAAATGTATGC 57.535 30.769 3.74 0.00 40.64 3.14
2929 4071 8.087136 TGCAAATAAGAGTTTGAAATGTATGCA 58.913 29.630 3.74 0.00 40.64 3.96
2930 4072 9.090692 GCAAATAAGAGTTTGAAATGTATGCAT 57.909 29.630 3.79 3.79 40.64 3.96
2965 4107 9.762933 TTTCCTGATAATTGAAAGTTTTTCCTG 57.237 29.630 0.00 0.00 0.00 3.86
2966 4108 8.704849 TCCTGATAATTGAAAGTTTTTCCTGA 57.295 30.769 0.00 0.00 0.00 3.86
2967 4109 9.312904 TCCTGATAATTGAAAGTTTTTCCTGAT 57.687 29.630 0.00 0.00 0.00 2.90
3207 4368 5.362717 TCCTCTCTAATTTCCTGCAACGATA 59.637 40.000 0.00 0.00 0.00 2.92
3237 4398 3.056250 TGCAAGATCTGGTCTTCTCTGAC 60.056 47.826 0.00 0.00 45.35 3.51
3297 4459 5.827797 TCTACAATTTTCTGCAACAAGACCT 59.172 36.000 0.00 0.00 0.00 3.85
3298 4460 5.343307 ACAATTTTCTGCAACAAGACCTT 57.657 34.783 0.00 0.00 0.00 3.50
3299 4461 5.111293 ACAATTTTCTGCAACAAGACCTTG 58.889 37.500 8.11 8.11 45.58 3.61
3322 4486 5.587043 TGTTGCGAAACCTCTTCTTCTTTAA 59.413 36.000 3.18 0.00 0.00 1.52
3361 4528 5.522097 ACCCTTAGAAAAATTGCAAACAACG 59.478 36.000 1.71 0.00 38.99 4.10
3387 4554 0.719465 ACCGCGTCTAATTTTCTGCG 59.281 50.000 4.92 7.56 44.68 5.18
3443 4668 6.588756 ACATCTTTCACGCGTCTAATTTTCTA 59.411 34.615 9.86 0.00 0.00 2.10
3518 4743 5.596836 TTTCTGCAACAAGATCCTTGTTT 57.403 34.783 18.97 5.79 40.30 2.83
3552 4777 0.460987 ACAGCTCTGCCGCATCTAAC 60.461 55.000 0.00 0.00 0.00 2.34
3589 4814 2.667481 CCATGTTGCAAAATTAGCACGG 59.333 45.455 0.00 0.00 42.54 4.94
3697 4922 0.246635 GTAGCGGGAAACTGAGCTCA 59.753 55.000 17.19 17.19 40.73 4.26
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
16 17 8.940768 AGCGTTACATGGCATTTAAAAATAAT 57.059 26.923 7.61 0.00 0.00 1.28
17 18 9.509855 CTAGCGTTACATGGCATTTAAAAATAA 57.490 29.630 7.61 0.00 0.00 1.40
18 19 8.679100 ACTAGCGTTACATGGCATTTAAAAATA 58.321 29.630 7.61 1.53 0.00 1.40
19 20 7.543756 ACTAGCGTTACATGGCATTTAAAAAT 58.456 30.769 7.61 0.53 0.00 1.82
20 21 6.915349 ACTAGCGTTACATGGCATTTAAAAA 58.085 32.000 7.61 0.00 0.00 1.94
21 22 6.503589 ACTAGCGTTACATGGCATTTAAAA 57.496 33.333 7.61 0.00 0.00 1.52
22 23 6.503589 AACTAGCGTTACATGGCATTTAAA 57.496 33.333 7.61 0.00 0.00 1.52
23 24 6.503589 AAACTAGCGTTACATGGCATTTAA 57.496 33.333 0.00 0.00 31.86 1.52
24 25 6.072397 ACAAAACTAGCGTTACATGGCATTTA 60.072 34.615 0.00 0.00 31.86 1.40
25 26 5.160641 CAAAACTAGCGTTACATGGCATTT 58.839 37.500 0.00 0.00 31.86 2.32
26 27 4.217550 ACAAAACTAGCGTTACATGGCATT 59.782 37.500 0.00 0.00 31.86 3.56
27 28 3.756434 ACAAAACTAGCGTTACATGGCAT 59.244 39.130 0.00 0.00 31.86 4.40
28 29 3.142951 ACAAAACTAGCGTTACATGGCA 58.857 40.909 0.00 0.00 31.86 4.92
29 30 3.824414 ACAAAACTAGCGTTACATGGC 57.176 42.857 0.00 0.00 31.86 4.40
30 31 5.974751 ACAAAACAAAACTAGCGTTACATGG 59.025 36.000 0.00 0.00 31.86 3.66
31 32 7.444558 AACAAAACAAAACTAGCGTTACATG 57.555 32.000 0.00 0.00 31.86 3.21
32 33 8.468720 AAAACAAAACAAAACTAGCGTTACAT 57.531 26.923 0.00 0.00 31.86 2.29
33 34 7.870588 AAAACAAAACAAAACTAGCGTTACA 57.129 28.000 0.00 0.00 31.86 2.41
36 37 8.980610 AGTTTAAAACAAAACAAAACTAGCGTT 58.019 25.926 0.00 0.00 40.97 4.84
37 38 8.523523 AGTTTAAAACAAAACAAAACTAGCGT 57.476 26.923 0.00 0.00 40.97 5.07
38 39 9.875660 GTAGTTTAAAACAAAACAAAACTAGCG 57.124 29.630 6.29 0.00 41.05 4.26
84 85 5.929992 CCATTGTTCAGCAGATGACATTTTT 59.070 36.000 0.00 0.00 37.77 1.94
85 86 5.475719 CCATTGTTCAGCAGATGACATTTT 58.524 37.500 0.00 0.00 37.77 1.82
86 87 4.081862 CCCATTGTTCAGCAGATGACATTT 60.082 41.667 0.00 0.00 37.77 2.32
87 88 3.446161 CCCATTGTTCAGCAGATGACATT 59.554 43.478 0.00 0.00 37.77 2.71
88 89 3.021695 CCCATTGTTCAGCAGATGACAT 58.978 45.455 0.00 0.00 37.77 3.06
89 90 2.439409 CCCATTGTTCAGCAGATGACA 58.561 47.619 0.00 0.00 37.77 3.58
90 91 1.747355 CCCCATTGTTCAGCAGATGAC 59.253 52.381 0.00 0.00 37.77 3.06
91 92 1.341285 CCCCCATTGTTCAGCAGATGA 60.341 52.381 0.00 0.00 35.62 2.92
92 93 1.108776 CCCCCATTGTTCAGCAGATG 58.891 55.000 0.00 0.00 0.00 2.90
93 94 1.002069 TCCCCCATTGTTCAGCAGAT 58.998 50.000 0.00 0.00 0.00 2.90
94 95 0.329261 CTCCCCCATTGTTCAGCAGA 59.671 55.000 0.00 0.00 0.00 4.26
95 96 1.318158 GCTCCCCCATTGTTCAGCAG 61.318 60.000 0.00 0.00 0.00 4.24
96 97 1.304381 GCTCCCCCATTGTTCAGCA 60.304 57.895 0.00 0.00 0.00 4.41
97 98 2.054453 GGCTCCCCCATTGTTCAGC 61.054 63.158 0.00 0.00 0.00 4.26
98 99 0.682209 CAGGCTCCCCCATTGTTCAG 60.682 60.000 0.00 0.00 35.39 3.02
99 100 1.383799 CAGGCTCCCCCATTGTTCA 59.616 57.895 0.00 0.00 35.39 3.18
100 101 1.380380 CCAGGCTCCCCCATTGTTC 60.380 63.158 0.00 0.00 35.39 3.18
101 102 2.772924 CCAGGCTCCCCCATTGTT 59.227 61.111 0.00 0.00 35.39 2.83
102 103 3.350163 CCCAGGCTCCCCCATTGT 61.350 66.667 0.00 0.00 35.39 2.71
103 104 2.363292 GATCCCAGGCTCCCCCATTG 62.363 65.000 0.00 0.00 35.39 2.82
104 105 2.046855 ATCCCAGGCTCCCCCATT 59.953 61.111 0.00 0.00 35.39 3.16
105 106 1.689124 TAGATCCCAGGCTCCCCCAT 61.689 60.000 0.00 0.00 35.39 4.00
106 107 2.332258 CTAGATCCCAGGCTCCCCCA 62.332 65.000 0.00 0.00 35.39 4.96
107 108 1.537643 CTAGATCCCAGGCTCCCCC 60.538 68.421 0.00 0.00 0.00 5.40
108 109 1.537643 CCTAGATCCCAGGCTCCCC 60.538 68.421 0.00 0.00 0.00 4.81
109 110 0.834261 GACCTAGATCCCAGGCTCCC 60.834 65.000 10.27 0.00 36.57 4.30
110 111 0.189822 AGACCTAGATCCCAGGCTCC 59.810 60.000 10.27 2.00 36.57 4.70
111 112 1.627864 GAGACCTAGATCCCAGGCTC 58.372 60.000 10.27 12.61 36.57 4.70
112 113 0.189822 GGAGACCTAGATCCCAGGCT 59.810 60.000 10.27 8.60 36.57 4.58
113 114 0.105453 TGGAGACCTAGATCCCAGGC 60.105 60.000 10.27 4.66 36.57 4.85
114 115 2.008242 CTGGAGACCTAGATCCCAGG 57.992 60.000 11.91 9.02 40.39 4.45
115 116 1.337118 GCTGGAGACCTAGATCCCAG 58.663 60.000 14.40 14.40 45.31 4.45
116 117 0.636647 TGCTGGAGACCTAGATCCCA 59.363 55.000 0.00 0.00 34.47 4.37
117 118 1.794714 TTGCTGGAGACCTAGATCCC 58.205 55.000 0.00 0.00 34.47 3.85
118 119 2.769095 AGTTTGCTGGAGACCTAGATCC 59.231 50.000 0.00 0.00 36.05 3.36
119 120 3.791245 CAGTTTGCTGGAGACCTAGATC 58.209 50.000 0.00 0.00 39.01 2.75
120 121 2.093235 GCAGTTTGCTGGAGACCTAGAT 60.093 50.000 0.00 0.00 42.78 1.98
121 122 1.276421 GCAGTTTGCTGGAGACCTAGA 59.724 52.381 0.00 0.00 42.78 2.43
122 123 1.731720 GCAGTTTGCTGGAGACCTAG 58.268 55.000 0.00 0.00 42.78 3.02
123 124 0.037326 CGCAGTTTGCTGGAGACCTA 60.037 55.000 0.00 0.00 42.25 3.08
124 125 1.302033 CGCAGTTTGCTGGAGACCT 60.302 57.895 0.00 0.00 42.25 3.85
125 126 2.970974 GCGCAGTTTGCTGGAGACC 61.971 63.158 0.30 0.00 42.25 3.85
126 127 1.963338 AGCGCAGTTTGCTGGAGAC 60.963 57.895 11.47 0.00 42.25 3.36
127 128 2.427320 AGCGCAGTTTGCTGGAGA 59.573 55.556 11.47 0.00 42.25 3.71
132 133 1.168407 ACATCACAGCGCAGTTTGCT 61.168 50.000 11.47 0.00 42.25 3.91
133 134 1.000233 CACATCACAGCGCAGTTTGC 61.000 55.000 11.47 0.00 40.69 3.68
134 135 0.386352 CCACATCACAGCGCAGTTTG 60.386 55.000 11.47 10.59 0.00 2.93
135 136 0.819259 ACCACATCACAGCGCAGTTT 60.819 50.000 11.47 0.00 0.00 2.66
136 137 1.227943 ACCACATCACAGCGCAGTT 60.228 52.632 11.47 0.00 0.00 3.16
172 173 0.754217 TTCCGGACGGAGGGAGTATG 60.754 60.000 13.64 0.00 46.06 2.39
173 174 0.032813 TTTCCGGACGGAGGGAGTAT 60.033 55.000 13.64 0.00 46.06 2.12
174 175 0.032813 ATTTCCGGACGGAGGGAGTA 60.033 55.000 13.64 0.00 46.06 2.59
175 176 0.032813 TATTTCCGGACGGAGGGAGT 60.033 55.000 13.64 0.00 46.06 3.85
176 177 0.388294 GTATTTCCGGACGGAGGGAG 59.612 60.000 13.64 0.00 46.06 4.30
178 179 0.828677 AAGTATTTCCGGACGGAGGG 59.171 55.000 13.64 0.00 46.06 4.30
179 180 1.206371 ACAAGTATTTCCGGACGGAGG 59.794 52.381 13.64 0.00 46.06 4.30
180 181 2.094390 TGACAAGTATTTCCGGACGGAG 60.094 50.000 13.64 3.15 46.06 4.63
181 182 1.894466 TGACAAGTATTTCCGGACGGA 59.106 47.619 1.83 9.76 43.52 4.69
182 183 2.373540 TGACAAGTATTTCCGGACGG 57.626 50.000 1.83 3.96 0.00 4.79
183 184 6.411630 TTTAATGACAAGTATTTCCGGACG 57.588 37.500 1.83 0.00 0.00 4.79
186 187 9.801873 ATTCATTTTAATGACAAGTATTTCCGG 57.198 29.630 4.70 0.00 44.54 5.14
246 247 9.793259 TCAAAGTAGACAAAAAGGAATGTATCT 57.207 29.630 0.00 0.00 0.00 1.98
249 250 9.567776 TCATCAAAGTAGACAAAAAGGAATGTA 57.432 29.630 0.00 0.00 0.00 2.29
250 251 8.352942 GTCATCAAAGTAGACAAAAAGGAATGT 58.647 33.333 0.00 0.00 32.68 2.71
251 252 8.352201 TGTCATCAAAGTAGACAAAAAGGAATG 58.648 33.333 0.00 0.00 39.15 2.67
252 253 8.463930 TGTCATCAAAGTAGACAAAAAGGAAT 57.536 30.769 0.00 0.00 39.15 3.01
253 254 7.873719 TGTCATCAAAGTAGACAAAAAGGAA 57.126 32.000 0.00 0.00 39.15 3.36
254 255 7.873719 TTGTCATCAAAGTAGACAAAAAGGA 57.126 32.000 4.90 0.00 45.95 3.36
260 261 8.999431 GGAAATACTTGTCATCAAAGTAGACAA 58.001 33.333 6.98 6.98 46.53 3.18
261 262 7.330946 CGGAAATACTTGTCATCAAAGTAGACA 59.669 37.037 0.00 0.00 40.24 3.41
262 263 7.201530 CCGGAAATACTTGTCATCAAAGTAGAC 60.202 40.741 0.00 0.00 32.87 2.59
263 264 6.816640 CCGGAAATACTTGTCATCAAAGTAGA 59.183 38.462 0.00 0.00 32.87 2.59
264 265 6.816640 TCCGGAAATACTTGTCATCAAAGTAG 59.183 38.462 0.00 0.00 32.87 2.57
265 266 6.592607 GTCCGGAAATACTTGTCATCAAAGTA 59.407 38.462 5.23 0.00 32.87 2.24
268 269 4.390603 CGTCCGGAAATACTTGTCATCAAA 59.609 41.667 5.23 0.00 32.87 2.69
270 271 3.517602 CGTCCGGAAATACTTGTCATCA 58.482 45.455 5.23 0.00 0.00 3.07
271 272 2.864343 CCGTCCGGAAATACTTGTCATC 59.136 50.000 5.23 0.00 37.50 2.92
272 273 2.498481 TCCGTCCGGAAATACTTGTCAT 59.502 45.455 5.23 0.00 42.05 3.06
273 274 1.894466 TCCGTCCGGAAATACTTGTCA 59.106 47.619 5.23 0.00 42.05 3.58
274 275 2.660189 TCCGTCCGGAAATACTTGTC 57.340 50.000 5.23 0.00 42.05 3.18
284 285 0.038744 AGGTACTCTTTCCGTCCGGA 59.961 55.000 0.00 0.00 43.52 5.14
285 286 2.576298 AGGTACTCTTTCCGTCCGG 58.424 57.895 0.00 0.00 0.00 5.14
298 299 2.305858 ATACCCCCGATCTGAGGTAC 57.694 55.000 0.00 0.00 37.67 3.34
299 300 3.053095 GGATATACCCCCGATCTGAGGTA 60.053 52.174 0.06 0.06 39.13 3.08
300 301 2.292323 GGATATACCCCCGATCTGAGGT 60.292 54.545 0.00 0.00 36.36 3.85
301 302 2.389715 GGATATACCCCCGATCTGAGG 58.610 57.143 0.00 0.00 0.00 3.86
327 328 4.141321 GGAGGTTATACCCCCGATCTTTTT 60.141 45.833 0.00 0.00 39.75 1.94
328 329 3.393609 GGAGGTTATACCCCCGATCTTTT 59.606 47.826 0.00 0.00 39.75 2.27
329 330 2.977580 GGAGGTTATACCCCCGATCTTT 59.022 50.000 0.00 0.00 39.75 2.52
330 331 2.090380 TGGAGGTTATACCCCCGATCTT 60.090 50.000 0.00 0.00 39.75 2.40
331 332 1.506418 TGGAGGTTATACCCCCGATCT 59.494 52.381 0.00 0.00 39.75 2.75
332 333 1.900486 CTGGAGGTTATACCCCCGATC 59.100 57.143 0.00 0.00 39.75 3.69
333 334 2.025636 CTGGAGGTTATACCCCCGAT 57.974 55.000 0.00 0.00 39.75 4.18
334 335 0.761702 GCTGGAGGTTATACCCCCGA 60.762 60.000 0.00 0.00 39.75 5.14
335 336 0.763223 AGCTGGAGGTTATACCCCCG 60.763 60.000 0.00 0.00 39.75 5.73
336 337 2.258109 CTAGCTGGAGGTTATACCCCC 58.742 57.143 0.00 0.00 39.75 5.40
337 338 1.624312 GCTAGCTGGAGGTTATACCCC 59.376 57.143 7.70 0.00 39.75 4.95
338 339 1.272769 CGCTAGCTGGAGGTTATACCC 59.727 57.143 13.93 0.00 39.75 3.69
339 340 2.229302 CTCGCTAGCTGGAGGTTATACC 59.771 54.545 13.93 0.00 38.99 2.73
340 341 2.351932 GCTCGCTAGCTGGAGGTTATAC 60.352 54.545 17.90 0.96 45.85 1.47
341 342 1.887198 GCTCGCTAGCTGGAGGTTATA 59.113 52.381 17.90 0.00 45.85 0.98
342 343 0.676736 GCTCGCTAGCTGGAGGTTAT 59.323 55.000 17.90 0.00 45.85 1.89
343 344 2.116383 GCTCGCTAGCTGGAGGTTA 58.884 57.895 17.90 0.00 45.85 2.85
344 345 2.896443 GCTCGCTAGCTGGAGGTT 59.104 61.111 17.90 0.00 45.85 3.50
369 370 2.419198 GCGCTGGATCAGACGGAT 59.581 61.111 0.00 0.00 39.53 4.18
495 1430 3.371285 GGCTCGTTGACCAAGTTTAGATC 59.629 47.826 0.00 0.00 0.00 2.75
527 1464 3.270027 TCTAATTTGATGGTGCACTCGG 58.730 45.455 17.98 0.00 0.00 4.63
531 1468 9.754382 ATTATCATTTCTAATTTGATGGTGCAC 57.246 29.630 8.80 8.80 32.58 4.57
556 1493 6.667414 TCCCAAATAAAAATAGACACCAGCAT 59.333 34.615 0.00 0.00 0.00 3.79
557 1494 6.013379 TCCCAAATAAAAATAGACACCAGCA 58.987 36.000 0.00 0.00 0.00 4.41
558 1495 6.377146 TCTCCCAAATAAAAATAGACACCAGC 59.623 38.462 0.00 0.00 0.00 4.85
560 1497 6.373216 CGTCTCCCAAATAAAAATAGACACCA 59.627 38.462 0.00 0.00 33.19 4.17
561 1498 6.677187 GCGTCTCCCAAATAAAAATAGACACC 60.677 42.308 0.00 0.00 33.19 4.16
562 1499 6.255950 GCGTCTCCCAAATAAAAATAGACAC 58.744 40.000 0.00 0.00 33.19 3.67
563 1500 5.064198 CGCGTCTCCCAAATAAAAATAGACA 59.936 40.000 0.00 0.00 33.19 3.41
595 1532 4.467438 TCTCTGACTGAGCCAATGACAATA 59.533 41.667 4.53 0.00 42.38 1.90
630 1567 8.704849 TGTTCTTCCTTCAGAATAAAAATGGA 57.295 30.769 0.00 0.00 35.23 3.41
631 1568 9.933723 ATTGTTCTTCCTTCAGAATAAAAATGG 57.066 29.630 0.00 0.00 37.41 3.16
691 1652 8.491958 GGTTGGGATTAGACTAGGAAGAAATAA 58.508 37.037 0.00 0.00 0.00 1.40
692 1653 7.849904 AGGTTGGGATTAGACTAGGAAGAAATA 59.150 37.037 0.00 0.00 0.00 1.40
693 1654 6.678857 AGGTTGGGATTAGACTAGGAAGAAAT 59.321 38.462 0.00 0.00 0.00 2.17
694 1655 6.030082 AGGTTGGGATTAGACTAGGAAGAAA 58.970 40.000 0.00 0.00 0.00 2.52
695 1656 5.600749 AGGTTGGGATTAGACTAGGAAGAA 58.399 41.667 0.00 0.00 0.00 2.52
696 1657 5.043281 AGAGGTTGGGATTAGACTAGGAAGA 60.043 44.000 0.00 0.00 0.00 2.87
697 1658 5.212745 AGAGGTTGGGATTAGACTAGGAAG 58.787 45.833 0.00 0.00 0.00 3.46
698 1659 5.222278 AGAGGTTGGGATTAGACTAGGAA 57.778 43.478 0.00 0.00 0.00 3.36
699 1660 4.901785 AGAGGTTGGGATTAGACTAGGA 57.098 45.455 0.00 0.00 0.00 2.94
734 1696 3.403558 GGGAGGGGAGCAGGACAC 61.404 72.222 0.00 0.00 0.00 3.67
882 1854 3.633952 GGAGGAAGAGGAGGGGAGTAATT 60.634 52.174 0.00 0.00 0.00 1.40
928 1900 2.031069 TCGGTCTGTTCGAACTGAAGAG 60.031 50.000 31.41 24.85 46.58 2.85
929 1901 1.951602 TCGGTCTGTTCGAACTGAAGA 59.048 47.619 31.41 28.32 38.36 2.87
977 1950 5.186797 GGTAGGAAGGATCTAGATGGATGTG 59.813 48.000 10.74 0.00 0.00 3.21
1168 2141 0.889306 AGCGAACGGAGAAGCTAGTT 59.111 50.000 0.00 0.00 38.29 2.24
1217 2190 2.831526 GCCAGGAATAAAAGAAGCCCAA 59.168 45.455 0.00 0.00 0.00 4.12
1285 2261 2.793278 ATTTCGTGGTGAAGGCAAAC 57.207 45.000 0.00 0.00 37.99 2.93
1312 2288 1.079127 CTCAACCTCGGGAATGCGT 60.079 57.895 0.00 0.00 0.00 5.24
1327 2303 3.026707 TCATAGTCGTCCCATTCCTCA 57.973 47.619 0.00 0.00 0.00 3.86
1351 2330 2.440796 CCATGGCGGCAGTCCAAT 60.441 61.111 19.29 0.00 37.13 3.16
1448 2433 0.181114 CATCCATCGGGCTTCTCCAA 59.819 55.000 0.00 0.00 36.21 3.53
1486 2474 2.737180 CTCACGGCACAGACCACT 59.263 61.111 0.00 0.00 0.00 4.00
1557 2545 1.198094 ACCATCACCATCACCGGTCA 61.198 55.000 2.59 0.00 37.07 4.02
1585 2579 3.327754 AACGCGACAGACACGTGC 61.328 61.111 15.93 8.74 43.56 5.34
1692 2722 0.381445 TTCCGGAATGAATGCATGCG 59.619 50.000 14.35 0.00 34.26 4.73
1775 2805 8.080417 GTCGTACTTTAGAATAGCCATATCACA 58.920 37.037 0.00 0.00 0.00 3.58
1780 2810 7.375834 CCATGTCGTACTTTAGAATAGCCATA 58.624 38.462 0.00 0.00 0.00 2.74
1792 2822 1.899814 TCAGAGGCCATGTCGTACTTT 59.100 47.619 5.01 0.00 0.00 2.66
1891 2921 1.414245 CCCAAATTGCCATCCCCCATA 60.414 52.381 0.00 0.00 0.00 2.74
1930 2960 5.122396 GCTTGACCATAGGTTGAGTGTTAAG 59.878 44.000 0.00 0.00 35.25 1.85
1936 2966 2.906389 TGAGCTTGACCATAGGTTGAGT 59.094 45.455 0.00 0.00 35.25 3.41
2001 3031 6.936279 AGAAGGTTCTTGAGATCGACAATTA 58.064 36.000 8.36 0.08 32.55 1.40
2086 3122 5.183904 GCCAAGGTCTGTAGTGATGAAAATT 59.816 40.000 0.00 0.00 0.00 1.82
2093 3129 3.110705 AGATGCCAAGGTCTGTAGTGAT 58.889 45.455 0.00 0.00 0.00 3.06
2095 3131 3.430929 GGTAGATGCCAAGGTCTGTAGTG 60.431 52.174 0.00 0.00 0.00 2.74
2170 3290 5.079689 TCATGTACGGAATCAAAGCACTA 57.920 39.130 0.00 0.00 0.00 2.74
2227 3353 8.926715 AGTTGTTACCAAATCAGAAAAGAAAC 57.073 30.769 0.00 0.00 30.94 2.78
2280 3406 7.412020 CCATTCTAAAAGAGCGACACTTACTTC 60.412 40.741 0.00 0.00 0.00 3.01
2303 3429 9.271921 TGCTAACTGATATATTACTCCATCCAT 57.728 33.333 0.00 0.00 0.00 3.41
2305 3431 9.944376 TTTGCTAACTGATATATTACTCCATCC 57.056 33.333 0.00 0.00 0.00 3.51
2419 3545 9.938280 TGTAACATCCAAGTATATTACATAGCC 57.062 33.333 0.00 0.00 29.87 3.93
2437 3563 7.171678 GGCATGAGAATAACTAGGTGTAACATC 59.828 40.741 0.00 0.00 39.98 3.06
2463 3589 8.524870 GCATGATAAAATTGCCAATTAGGTAG 57.475 34.615 2.54 0.00 40.61 3.18
2474 3600 7.781548 AAGAAGAATGGCATGATAAAATTGC 57.218 32.000 0.00 0.00 35.64 3.56
2573 3699 4.795469 TGATGATAGTGGCCACATTCAAT 58.205 39.130 36.39 23.74 31.47 2.57
2685 3826 6.037098 CCGACAAAGTTACCAACAAAATGAA 58.963 36.000 0.00 0.00 0.00 2.57
2704 3845 3.146066 GGAATTATTATGCTGGCCGACA 58.854 45.455 0.00 0.00 0.00 4.35
2744 3885 2.691409 TGAATCCTTCACCCGCTTAG 57.309 50.000 0.00 0.00 34.08 2.18
2759 3900 3.875134 GGTTCATCCGTAAATCCGTGAAT 59.125 43.478 0.00 0.00 0.00 2.57
2760 3901 3.055675 AGGTTCATCCGTAAATCCGTGAA 60.056 43.478 0.00 0.00 41.99 3.18
2762 3903 2.901249 AGGTTCATCCGTAAATCCGTG 58.099 47.619 0.00 0.00 41.99 4.94
2764 3905 4.317671 AGTAGGTTCATCCGTAAATCCG 57.682 45.455 0.00 0.00 41.99 4.18
2765 3906 6.402456 ACTAGTAGGTTCATCCGTAAATCC 57.598 41.667 1.45 0.00 41.99 3.01
2766 3907 7.263496 ACAACTAGTAGGTTCATCCGTAAATC 58.737 38.462 0.00 0.00 41.99 2.17
2767 3908 7.093640 TGACAACTAGTAGGTTCATCCGTAAAT 60.094 37.037 0.00 0.00 41.99 1.40
2769 3910 5.711506 TGACAACTAGTAGGTTCATCCGTAA 59.288 40.000 0.00 0.00 41.99 3.18
2772 3913 4.082408 TGTGACAACTAGTAGGTTCATCCG 60.082 45.833 0.00 0.00 41.99 4.18
2773 3914 5.401531 TGTGACAACTAGTAGGTTCATCC 57.598 43.478 0.00 0.00 0.00 3.51
2774 3915 5.185249 TCCTGTGACAACTAGTAGGTTCATC 59.815 44.000 0.00 0.00 0.00 2.92
2805 3946 0.250513 GTCGGTTGGCTCTCTCCATT 59.749 55.000 0.00 0.00 35.77 3.16
2811 3952 3.863041 AGATAAAAGTCGGTTGGCTCTC 58.137 45.455 0.00 0.00 0.00 3.20
2855 3997 6.928348 TGTATCCGGTGGATTACAAGATAT 57.072 37.500 0.00 0.00 39.79 1.63
2862 4004 6.877611 AATGAAATGTATCCGGTGGATTAC 57.122 37.500 0.00 1.91 39.79 1.89
2865 4007 6.264518 GGTTTAATGAAATGTATCCGGTGGAT 59.735 38.462 0.00 3.49 45.40 3.41
2866 4008 5.591067 GGTTTAATGAAATGTATCCGGTGGA 59.409 40.000 0.00 0.00 35.55 4.02
2867 4009 5.504994 CGGTTTAATGAAATGTATCCGGTGG 60.505 44.000 0.00 0.00 29.84 4.61
2868 4010 5.504994 CCGGTTTAATGAAATGTATCCGGTG 60.505 44.000 10.99 0.00 41.26 4.94
2869 4011 4.577283 CCGGTTTAATGAAATGTATCCGGT 59.423 41.667 10.99 0.00 41.26 5.28
2870 4012 4.817464 TCCGGTTTAATGAAATGTATCCGG 59.183 41.667 12.45 12.45 44.71 5.14
2871 4013 5.994887 TCCGGTTTAATGAAATGTATCCG 57.005 39.130 0.00 0.00 32.03 4.18
2872 4014 7.504924 TCATCCGGTTTAATGAAATGTATCC 57.495 36.000 0.00 0.00 0.00 2.59
2876 4018 9.354673 AGAATATCATCCGGTTTAATGAAATGT 57.645 29.630 7.56 0.00 35.64 2.71
2879 4021 8.134895 GCAAGAATATCATCCGGTTTAATGAAA 58.865 33.333 7.56 0.00 35.64 2.69
2880 4022 7.284261 TGCAAGAATATCATCCGGTTTAATGAA 59.716 33.333 7.56 0.00 35.64 2.57
2881 4023 6.770303 TGCAAGAATATCATCCGGTTTAATGA 59.230 34.615 0.00 3.27 36.40 2.57
2882 4024 6.969366 TGCAAGAATATCATCCGGTTTAATG 58.031 36.000 0.00 0.00 0.00 1.90
2883 4025 7.581213 TTGCAAGAATATCATCCGGTTTAAT 57.419 32.000 0.00 0.00 0.00 1.40
2884 4026 7.397892 TTTGCAAGAATATCATCCGGTTTAA 57.602 32.000 0.00 0.00 0.00 1.52
2885 4027 7.581213 ATTTGCAAGAATATCATCCGGTTTA 57.419 32.000 0.00 0.00 0.00 2.01
2886 4028 5.913137 TTTGCAAGAATATCATCCGGTTT 57.087 34.783 0.00 0.00 0.00 3.27
2887 4029 7.502226 TCTTATTTGCAAGAATATCATCCGGTT 59.498 33.333 0.00 0.00 31.63 4.44
2888 4030 6.998074 TCTTATTTGCAAGAATATCATCCGGT 59.002 34.615 0.00 0.00 31.63 5.28
2889 4031 7.173907 ACTCTTATTTGCAAGAATATCATCCGG 59.826 37.037 0.00 0.00 34.22 5.14
2890 4032 8.092521 ACTCTTATTTGCAAGAATATCATCCG 57.907 34.615 0.00 0.00 34.22 4.18
2898 4040 9.768662 ACATTTCAAACTCTTATTTGCAAGAAT 57.231 25.926 0.00 0.00 39.08 2.40
2902 4044 8.924691 GCATACATTTCAAACTCTTATTTGCAA 58.075 29.630 0.00 0.00 39.08 4.08
2903 4045 8.087136 TGCATACATTTCAAACTCTTATTTGCA 58.913 29.630 0.00 0.00 39.08 4.08
2904 4046 8.464770 TGCATACATTTCAAACTCTTATTTGC 57.535 30.769 0.00 0.00 39.08 3.68
2939 4081 9.762933 CAGGAAAAACTTTCAATTATCAGGAAA 57.237 29.630 1.88 0.00 0.00 3.13
2940 4082 9.142014 TCAGGAAAAACTTTCAATTATCAGGAA 57.858 29.630 1.88 0.00 0.00 3.36
2941 4083 8.704849 TCAGGAAAAACTTTCAATTATCAGGA 57.295 30.769 1.88 0.00 0.00 3.86
2951 4093 9.762933 CCTTTCAATTATCAGGAAAAACTTTCA 57.237 29.630 1.88 0.00 30.87 2.69
2952 4094 9.208022 CCCTTTCAATTATCAGGAAAAACTTTC 57.792 33.333 0.00 0.00 30.87 2.62
2953 4095 8.933653 TCCCTTTCAATTATCAGGAAAAACTTT 58.066 29.630 0.00 0.00 30.87 2.66
2954 4096 8.491045 TCCCTTTCAATTATCAGGAAAAACTT 57.509 30.769 0.00 0.00 30.87 2.66
2955 4097 7.950124 TCTCCCTTTCAATTATCAGGAAAAACT 59.050 33.333 0.00 0.00 30.87 2.66
2956 4098 8.029522 GTCTCCCTTTCAATTATCAGGAAAAAC 58.970 37.037 0.00 0.00 30.87 2.43
2957 4099 7.094377 CGTCTCCCTTTCAATTATCAGGAAAAA 60.094 37.037 0.00 0.00 30.87 1.94
2958 4100 6.374333 CGTCTCCCTTTCAATTATCAGGAAAA 59.626 38.462 0.00 0.00 30.87 2.29
2959 4101 5.880332 CGTCTCCCTTTCAATTATCAGGAAA 59.120 40.000 0.00 0.00 0.00 3.13
2960 4102 5.428253 CGTCTCCCTTTCAATTATCAGGAA 58.572 41.667 0.00 0.00 0.00 3.36
2961 4103 4.683400 GCGTCTCCCTTTCAATTATCAGGA 60.683 45.833 0.00 0.00 0.00 3.86
2962 4104 3.561725 GCGTCTCCCTTTCAATTATCAGG 59.438 47.826 0.00 0.00 0.00 3.86
2963 4105 4.446371 AGCGTCTCCCTTTCAATTATCAG 58.554 43.478 0.00 0.00 0.00 2.90
2964 4106 4.487714 AGCGTCTCCCTTTCAATTATCA 57.512 40.909 0.00 0.00 0.00 2.15
2965 4107 4.444720 CGTAGCGTCTCCCTTTCAATTATC 59.555 45.833 0.00 0.00 0.00 1.75
2966 4108 4.369182 CGTAGCGTCTCCCTTTCAATTAT 58.631 43.478 0.00 0.00 0.00 1.28
2967 4109 3.777478 CGTAGCGTCTCCCTTTCAATTA 58.223 45.455 0.00 0.00 0.00 1.40
2968 4110 2.618053 CGTAGCGTCTCCCTTTCAATT 58.382 47.619 0.00 0.00 0.00 2.32
2969 4111 2.295253 CGTAGCGTCTCCCTTTCAAT 57.705 50.000 0.00 0.00 0.00 2.57
2970 4112 3.806591 CGTAGCGTCTCCCTTTCAA 57.193 52.632 0.00 0.00 0.00 2.69
3034 4176 3.892965 CGCGCGCGTACATCGAAA 61.893 61.111 42.49 0.00 42.86 3.46
3150 4311 1.521457 GCGTCAGGCATCGAATGGA 60.521 57.895 0.00 0.00 42.87 3.41
3162 4323 0.800683 TATTGAACGGCTCGCGTCAG 60.801 55.000 5.77 0.00 0.00 3.51
3181 4342 4.621747 CGTTGCAGGAAATTAGAGAGGAGT 60.622 45.833 0.00 0.00 0.00 3.85
3207 4368 3.072184 AGACCAGATCTTGCAACAAGAGT 59.928 43.478 14.67 7.68 31.62 3.24
3297 4459 3.541632 AGAAGAAGAGGTTTCGCAACAA 58.458 40.909 0.00 0.00 34.15 2.83
3298 4460 3.194005 AGAAGAAGAGGTTTCGCAACA 57.806 42.857 0.00 0.00 34.15 3.33
3299 4461 4.553756 AAAGAAGAAGAGGTTTCGCAAC 57.446 40.909 0.00 0.00 0.00 4.17
3302 4464 8.076781 AGAAAATTAAAGAAGAAGAGGTTTCGC 58.923 33.333 0.00 0.00 0.00 4.70
3303 4465 9.387123 CAGAAAATTAAAGAAGAAGAGGTTTCG 57.613 33.333 0.00 0.00 0.00 3.46
3304 4466 9.186323 GCAGAAAATTAAAGAAGAAGAGGTTTC 57.814 33.333 0.00 0.00 0.00 2.78
3322 4486 5.385198 TCTAAGGGTCTTGTTGCAGAAAAT 58.615 37.500 0.00 0.00 0.00 1.82
3361 4528 0.175073 AATTAGACGCGGTGGGAGAC 59.825 55.000 12.47 0.00 0.00 3.36
3387 4554 0.775861 GACGCGTGAAAAATGTTGCC 59.224 50.000 20.70 0.00 0.00 4.52
3467 4692 3.839823 CAACCGAAAATGTTGTTGCAG 57.160 42.857 0.00 0.00 38.58 4.41
3489 4714 7.951347 AGGATCTTGTTGCAGAAAATTAGAT 57.049 32.000 0.00 0.00 0.00 1.98
3518 4743 6.257630 GGCAGAGCTGTTGTTTTAATTTTTGA 59.742 34.615 0.00 0.00 0.00 2.69
3552 4777 1.542915 CATGGGTCCTGTTGCAGAAAG 59.457 52.381 0.00 0.00 32.44 2.62
3589 4814 2.908940 CGCTTCCCCATCCATGGC 60.909 66.667 6.96 0.00 46.70 4.40
3644 4869 1.066143 CAACGGTGCTTCTACATCCCT 60.066 52.381 0.00 0.00 0.00 4.20


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.