Multiple sequence alignment - TraesCS5B01G545000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G545000 chr5B 100.000 3728 0 0 1 3728 697522208 697525935 0.000000e+00 6885.0
1 TraesCS5B01G545000 chr5B 89.671 639 60 4 1 638 487923694 487923061 0.000000e+00 809.0
2 TraesCS5B01G545000 chr5B 83.546 626 99 4 9 631 398806844 398807468 1.930000e-162 582.0
3 TraesCS5B01G545000 chr5B 90.411 146 14 0 3583 3728 697564882 697565027 3.800000e-45 193.0
4 TraesCS5B01G545000 chr5B 76.735 245 41 14 1425 1667 693071789 693072019 5.060000e-24 122.0
5 TraesCS5B01G545000 chr5B 94.340 53 0 1 3371 3423 697564632 697564681 1.110000e-10 78.7
6 TraesCS5B01G545000 chr4A 90.282 2449 134 42 969 3373 615169087 615171475 0.000000e+00 3109.0
7 TraesCS5B01G545000 chr4A 90.040 251 22 3 678 925 550080980 550081230 4.640000e-84 322.0
8 TraesCS5B01G545000 chr4A 79.055 487 73 10 2062 2538 611985659 611986126 1.300000e-79 307.0
9 TraesCS5B01G545000 chr4A 86.339 183 17 6 3549 3728 615209341 615209518 3.800000e-45 193.0
10 TraesCS5B01G545000 chr4A 87.129 101 13 0 1425 1525 612011329 612011229 8.460000e-22 115.0
11 TraesCS5B01G545000 chr4A 81.250 144 19 7 1630 1769 611974431 611974570 3.940000e-20 110.0
12 TraesCS5B01G545000 chr4A 78.947 171 22 8 3506 3676 615178498 615178654 1.830000e-18 104.0
13 TraesCS5B01G545000 chr4A 83.051 59 9 1 2680 2738 611988889 611988946 7.000000e-03 52.8
14 TraesCS5B01G545000 chr5D 90.556 1726 104 16 1023 2713 552798572 552796871 0.000000e+00 2230.0
15 TraesCS5B01G545000 chr5D 84.382 461 44 8 2914 3373 552796882 552796449 9.570000e-116 427.0
16 TraesCS5B01G545000 chr5D 84.694 196 26 3 3534 3728 552789702 552789510 3.800000e-45 193.0
17 TraesCS5B01G545000 chr5D 88.571 105 10 2 2453 2556 558895633 558895736 3.910000e-25 126.0
18 TraesCS5B01G545000 chr5D 88.119 101 12 0 1425 1525 558921130 558921030 1.820000e-23 121.0
19 TraesCS5B01G545000 chr5D 92.754 69 1 2 969 1037 552798653 552798589 3.060000e-16 97.1
20 TraesCS5B01G545000 chr5D 85.455 55 7 1 2683 2737 558904602 558904655 5.200000e-04 56.5
21 TraesCS5B01G545000 chr1D 85.333 600 74 6 1 598 365057831 365058418 3.180000e-170 608.0
22 TraesCS5B01G545000 chr3A 83.580 609 98 2 27 634 496599019 496598412 1.500000e-158 569.0
23 TraesCS5B01G545000 chr6D 84.327 587 85 6 48 634 366681853 366681274 5.400000e-158 568.0
24 TraesCS5B01G545000 chr6D 83.043 631 98 6 9 631 24384734 24385363 6.990000e-157 564.0
25 TraesCS5B01G545000 chr6D 95.572 271 9 3 658 926 470979094 470979363 7.400000e-117 431.0
26 TraesCS5B01G545000 chr6D 89.860 286 17 3 658 932 16248626 16248910 1.270000e-94 357.0
27 TraesCS5B01G545000 chr3B 82.437 632 110 1 1 631 525833590 525832959 5.440000e-153 551.0
28 TraesCS5B01G545000 chr3B 90.141 284 17 2 658 930 79529270 79529553 3.540000e-95 359.0
29 TraesCS5B01G545000 chr6B 82.512 629 107 3 9 635 683421864 683421237 1.960000e-152 549.0
30 TraesCS5B01G545000 chr6B 85.354 198 25 4 3532 3728 620280153 620280347 6.310000e-48 202.0
31 TraesCS5B01G545000 chr2B 95.911 269 10 1 658 925 39931632 39931900 5.720000e-118 435.0
32 TraesCS5B01G545000 chr2B 95.556 270 11 1 658 926 90783565 90783296 7.400000e-117 431.0
33 TraesCS5B01G545000 chr2B 84.252 127 16 4 816 940 717054130 717054254 1.820000e-23 121.0
34 TraesCS5B01G545000 chr2A 95.880 267 10 1 658 923 763863271 763863537 7.400000e-117 431.0
35 TraesCS5B01G545000 chr2A 94.444 270 14 1 658 926 608042596 608042865 7.450000e-112 414.0
36 TraesCS5B01G545000 chr6A 94.834 271 12 2 658 926 11574421 11574151 4.450000e-114 422.0
37 TraesCS5B01G545000 chr6A 82.650 317 50 3 323 637 19737343 19737656 3.670000e-70 276.0
38 TraesCS5B01G545000 chr5A 94.796 269 13 1 658 925 392031258 392030990 5.760000e-113 418.0
39 TraesCS5B01G545000 chr5A 94.796 269 13 1 658 925 392033250 392032982 5.760000e-113 418.0
40 TraesCS5B01G545000 chr7A 94.118 272 14 2 658 928 53858708 53858438 2.680000e-111 412.0
41 TraesCS5B01G545000 chr7A 78.226 620 130 4 14 631 675054072 675053456 3.490000e-105 392.0
42 TraesCS5B01G545000 chr7A 88.339 283 21 3 658 928 602049623 602049905 2.780000e-86 329.0
43 TraesCS5B01G545000 chr7A 85.000 80 11 1 841 920 696653803 696653881 3.090000e-11 80.5
44 TraesCS5B01G545000 chr1B 91.034 290 13 4 658 934 638037385 638037096 2.720000e-101 379.0
45 TraesCS5B01G545000 chr1B 75.374 601 124 16 14 611 111257758 111258337 6.140000e-68 268.0
46 TraesCS5B01G545000 chrUn 79.121 455 67 15 2113 2556 67435644 67435207 4.710000e-74 289.0
47 TraesCS5B01G545000 chr7B 85.022 227 33 1 3491 3717 744079549 744079774 2.900000e-56 230.0
48 TraesCS5B01G545000 chr3D 86.139 101 11 2 836 933 478641951 478641851 5.090000e-19 106.0
49 TraesCS5B01G545000 chr7D 85.714 63 4 5 3139 3200 574861380 574861438 1.120000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G545000 chr5B 697522208 697525935 3727 False 6885.000000 6885 100.000000 1 3728 1 chr5B.!!$F3 3727
1 TraesCS5B01G545000 chr5B 487923061 487923694 633 True 809.000000 809 89.671000 1 638 1 chr5B.!!$R1 637
2 TraesCS5B01G545000 chr5B 398806844 398807468 624 False 582.000000 582 83.546000 9 631 1 chr5B.!!$F1 622
3 TraesCS5B01G545000 chr4A 615169087 615171475 2388 False 3109.000000 3109 90.282000 969 3373 1 chr4A.!!$F3 2404
4 TraesCS5B01G545000 chr5D 552796449 552798653 2204 True 918.033333 2230 89.230667 969 3373 3 chr5D.!!$R3 2404
5 TraesCS5B01G545000 chr1D 365057831 365058418 587 False 608.000000 608 85.333000 1 598 1 chr1D.!!$F1 597
6 TraesCS5B01G545000 chr3A 496598412 496599019 607 True 569.000000 569 83.580000 27 634 1 chr3A.!!$R1 607
7 TraesCS5B01G545000 chr6D 366681274 366681853 579 True 568.000000 568 84.327000 48 634 1 chr6D.!!$R1 586
8 TraesCS5B01G545000 chr6D 24384734 24385363 629 False 564.000000 564 83.043000 9 631 1 chr6D.!!$F2 622
9 TraesCS5B01G545000 chr3B 525832959 525833590 631 True 551.000000 551 82.437000 1 631 1 chr3B.!!$R1 630
10 TraesCS5B01G545000 chr6B 683421237 683421864 627 True 549.000000 549 82.512000 9 635 1 chr6B.!!$R1 626
11 TraesCS5B01G545000 chr5A 392030990 392033250 2260 True 418.000000 418 94.796000 658 925 2 chr5A.!!$R1 267
12 TraesCS5B01G545000 chr7A 675053456 675054072 616 True 392.000000 392 78.226000 14 631 1 chr7A.!!$R2 617
13 TraesCS5B01G545000 chr1B 111257758 111258337 579 False 268.000000 268 75.374000 14 611 1 chr1B.!!$F1 597

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
938 948 0.165295 GCCTAAACTCCGAAACGCAC 59.835 55.0 0.00 0.00 0.00 5.34 F
1421 1674 0.110283 TCATTGCGTACGTCGACGAA 60.110 50.0 41.52 25.77 45.82 3.85 F
2292 3203 0.962855 GGGTTTGCAAGGAGGAGCTC 60.963 60.0 4.71 4.71 0.00 4.09 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2391 3302 0.044855 ACTGACTATCCTTGGCCCCT 59.955 55.0 0.00 0.0 0.00 4.79 R
2392 3303 0.181350 CACTGACTATCCTTGGCCCC 59.819 60.0 0.00 0.0 0.00 5.80 R
3659 5052 0.033642 GATAGGGGCGCAAGGAGTAC 59.966 60.0 10.83 0.0 38.28 2.73 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
107 108 2.123428 GTCATGCCTGGACATGGGC 61.123 63.158 22.30 15.29 46.08 5.36
145 146 4.379394 CCAGGGTTTATCACAATCAACACG 60.379 45.833 0.00 0.00 29.43 4.49
146 147 4.454161 CAGGGTTTATCACAATCAACACGA 59.546 41.667 0.00 0.00 29.43 4.35
185 187 3.198853 AGAAGATGGTAAAGGAGGAGTGC 59.801 47.826 0.00 0.00 0.00 4.40
193 195 2.997897 GGAGGAGTGCGGGTGTCT 60.998 66.667 0.00 0.00 0.00 3.41
196 198 2.997897 GGAGTGCGGGTGTCTCCT 60.998 66.667 0.00 0.00 42.92 3.69
209 211 3.433740 GGTGTCTCCTGTTCTTCCAACTT 60.434 47.826 0.00 0.00 0.00 2.66
214 216 5.008118 GTCTCCTGTTCTTCCAACTTCTTTG 59.992 44.000 0.00 0.00 34.63 2.77
295 297 2.089936 GTGCGCGACGGTGTTATCA 61.090 57.895 12.10 0.00 0.00 2.15
335 337 5.568685 TTTTCAAACGTCATTGTGGAGAA 57.431 34.783 0.00 0.00 0.00 2.87
345 347 1.423584 TTGTGGAGAAGGACTGCTCA 58.576 50.000 9.45 0.00 38.33 4.26
346 348 1.423584 TGTGGAGAAGGACTGCTCAA 58.576 50.000 9.45 0.00 37.47 3.02
376 378 2.523168 TCTGGACCACTCGCCACA 60.523 61.111 0.00 0.00 0.00 4.17
391 393 1.538204 GCCACAACTCTCGTTCAGTCA 60.538 52.381 0.00 0.00 0.00 3.41
395 397 2.365617 ACAACTCTCGTTCAGTCATGGT 59.634 45.455 0.00 0.00 0.00 3.55
523 533 2.223782 GCTTGCACAATTGACTTGACCA 60.224 45.455 13.59 0.00 38.29 4.02
554 564 1.614413 CGATAGTACTCCCAGCTTCCC 59.386 57.143 0.00 0.00 0.00 3.97
585 595 1.891919 GTTGGCGGACTGTTCAGCA 60.892 57.895 0.00 0.00 44.12 4.41
682 692 4.463050 TGTTTCCAGGGACTTATTGGTT 57.537 40.909 0.00 0.00 34.60 3.67
695 705 7.670979 GGGACTTATTGGTTTAGGGACTTAAAA 59.329 37.037 0.00 0.00 41.75 1.52
727 737 7.499232 CCTATAAGTCCCATCTAAACCAAACAG 59.501 40.741 0.00 0.00 0.00 3.16
755 765 5.366460 GACTTATAGGGACTTAAAGTGGGC 58.634 45.833 0.00 0.00 40.60 5.36
769 779 8.107095 ACTTAAAGTGGGCATTTGAGACTTATA 58.893 33.333 7.52 0.00 30.26 0.98
845 855 7.162082 ACTTATAAGTCTCAGGAACCAAACAG 58.838 38.462 12.50 0.00 32.86 3.16
868 878 3.808834 AGGGACTTTTTAGGGACTTGG 57.191 47.619 0.00 0.00 34.75 3.61
869 879 3.332968 AGGGACTTTTTAGGGACTTGGA 58.667 45.455 0.00 0.00 34.75 3.53
881 891 8.857694 TTTAGGGACTTGGAACTTATAAGTTG 57.142 34.615 30.66 19.76 44.52 3.16
918 928 5.875359 GTCCTAGGACTTATGAACCAAACAG 59.125 44.000 31.12 0.00 41.57 3.16
920 930 3.421844 AGGACTTATGAACCAAACAGGC 58.578 45.455 0.00 0.00 43.14 4.85
922 932 3.421844 GACTTATGAACCAAACAGGCCT 58.578 45.455 0.00 0.00 43.14 5.19
923 933 4.566907 GGACTTATGAACCAAACAGGCCTA 60.567 45.833 3.98 0.00 43.14 3.93
926 936 5.243060 ACTTATGAACCAAACAGGCCTAAAC 59.757 40.000 3.98 0.00 43.14 2.01
928 938 3.219281 TGAACCAAACAGGCCTAAACTC 58.781 45.455 3.98 0.00 43.14 3.01
929 939 2.287977 ACCAAACAGGCCTAAACTCC 57.712 50.000 3.98 0.00 43.14 3.85
930 940 1.165270 CCAAACAGGCCTAAACTCCG 58.835 55.000 3.98 0.00 0.00 4.63
931 941 1.271163 CCAAACAGGCCTAAACTCCGA 60.271 52.381 3.98 0.00 0.00 4.55
932 942 2.500229 CAAACAGGCCTAAACTCCGAA 58.500 47.619 3.98 0.00 0.00 4.30
933 943 2.882137 CAAACAGGCCTAAACTCCGAAA 59.118 45.455 3.98 0.00 0.00 3.46
935 945 1.076332 CAGGCCTAAACTCCGAAACG 58.924 55.000 3.98 0.00 0.00 3.60
936 946 0.672711 AGGCCTAAACTCCGAAACGC 60.673 55.000 1.29 0.00 0.00 4.84
937 947 0.952010 GGCCTAAACTCCGAAACGCA 60.952 55.000 0.00 0.00 0.00 5.24
938 948 0.165295 GCCTAAACTCCGAAACGCAC 59.835 55.000 0.00 0.00 0.00 5.34
939 949 0.437295 CCTAAACTCCGAAACGCACG 59.563 55.000 0.00 0.00 0.00 5.34
940 950 1.411394 CTAAACTCCGAAACGCACGA 58.589 50.000 0.00 0.00 0.00 4.35
942 952 0.529119 AAACTCCGAAACGCACGAGT 60.529 50.000 0.00 0.00 0.00 4.18
943 953 0.529119 AACTCCGAAACGCACGAGTT 60.529 50.000 0.00 0.00 35.59 3.01
944 954 0.311790 ACTCCGAAACGCACGAGTTA 59.688 50.000 0.00 0.00 33.41 2.24
945 955 0.982673 CTCCGAAACGCACGAGTTAG 59.017 55.000 0.00 0.00 33.41 2.34
946 956 0.311790 TCCGAAACGCACGAGTTAGT 59.688 50.000 0.00 0.00 33.41 2.24
947 957 1.535028 TCCGAAACGCACGAGTTAGTA 59.465 47.619 0.00 0.00 33.41 1.82
948 958 2.031245 TCCGAAACGCACGAGTTAGTAA 60.031 45.455 0.00 0.00 33.41 2.24
949 959 2.089581 CCGAAACGCACGAGTTAGTAAC 59.910 50.000 4.78 4.78 33.41 2.50
950 960 2.720578 CGAAACGCACGAGTTAGTAACA 59.279 45.455 15.28 0.00 33.41 2.41
952 962 4.659922 CGAAACGCACGAGTTAGTAACAAG 60.660 45.833 15.28 10.33 33.41 3.16
953 963 2.669364 ACGCACGAGTTAGTAACAAGG 58.331 47.619 15.28 6.20 0.00 3.61
957 967 5.163581 ACGCACGAGTTAGTAACAAGGATAT 60.164 40.000 15.28 0.00 0.00 1.63
958 968 5.398711 CGCACGAGTTAGTAACAAGGATATC 59.601 44.000 15.28 0.00 0.00 1.63
959 969 5.398711 GCACGAGTTAGTAACAAGGATATCG 59.601 44.000 15.28 14.40 0.00 2.92
962 972 6.094603 ACGAGTTAGTAACAAGGATATCGTGT 59.905 38.462 17.97 1.88 39.70 4.49
963 973 7.280876 ACGAGTTAGTAACAAGGATATCGTGTA 59.719 37.037 17.97 0.00 37.09 2.90
964 974 8.124823 CGAGTTAGTAACAAGGATATCGTGTAA 58.875 37.037 15.28 0.83 37.09 2.41
965 975 9.793252 GAGTTAGTAACAAGGATATCGTGTAAA 57.207 33.333 15.28 1.68 37.09 2.01
1028 1038 3.582998 TCCTAGGCCAAATCAGGAATG 57.417 47.619 5.01 0.00 34.25 2.67
1054 1264 4.644234 TGAAGCCAGTTGTGAATTCTTTGA 59.356 37.500 7.05 0.00 0.00 2.69
1081 1291 6.633856 CCCTTTCTTTTGCTGCAAGTAATAT 58.366 36.000 15.39 0.00 38.67 1.28
1082 1292 7.630513 GCCCTTTCTTTTGCTGCAAGTAATATA 60.631 37.037 15.39 0.00 38.67 0.86
1084 1294 7.433425 CCTTTCTTTTGCTGCAAGTAATATAGC 59.567 37.037 15.39 0.00 38.67 2.97
1101 1318 7.715265 AATATAGCAGACACGGTAGATTTTG 57.285 36.000 0.00 0.00 29.09 2.44
1102 1319 2.699954 AGCAGACACGGTAGATTTTGG 58.300 47.619 0.00 0.00 0.00 3.28
1103 1320 2.038557 AGCAGACACGGTAGATTTTGGT 59.961 45.455 0.00 0.00 0.00 3.67
1104 1321 3.259876 AGCAGACACGGTAGATTTTGGTA 59.740 43.478 0.00 0.00 0.00 3.25
1105 1322 3.617263 GCAGACACGGTAGATTTTGGTAG 59.383 47.826 0.00 0.00 0.00 3.18
1106 1323 4.817517 CAGACACGGTAGATTTTGGTAGT 58.182 43.478 0.00 0.00 0.00 2.73
1107 1324 5.235516 CAGACACGGTAGATTTTGGTAGTT 58.764 41.667 0.00 0.00 0.00 2.24
1175 1394 6.434340 ACTTCCACTTGCTAAAATTTAGGAGG 59.566 38.462 13.23 13.23 0.00 4.30
1351 1577 3.680786 CCGGCGACACTCTGGTCA 61.681 66.667 9.30 0.00 37.66 4.02
1421 1674 0.110283 TCATTGCGTACGTCGACGAA 60.110 50.000 41.52 25.77 45.82 3.85
1466 1722 1.945354 GACGAGATGAAGACGGGGCA 61.945 60.000 0.00 0.00 0.00 5.36
1614 1870 1.837051 CCTCCGGCTGGGCTATACA 60.837 63.158 12.87 0.00 35.24 2.29
1777 2045 2.280524 CCAGTTTCACGCACCGGA 60.281 61.111 9.46 0.00 0.00 5.14
2073 2984 2.997315 TCCCTGGACACCGAGCAG 60.997 66.667 0.00 0.00 0.00 4.24
2074 2985 4.767255 CCCTGGACACCGAGCAGC 62.767 72.222 0.00 0.00 0.00 5.25
2077 2988 1.376424 CTGGACACCGAGCAGCAAT 60.376 57.895 0.00 0.00 0.00 3.56
2080 2991 2.360350 ACACCGAGCAGCAATGGG 60.360 61.111 0.00 0.00 0.00 4.00
2081 2992 3.818787 CACCGAGCAGCAATGGGC 61.819 66.667 0.00 0.00 45.30 5.36
2292 3203 0.962855 GGGTTTGCAAGGAGGAGCTC 60.963 60.000 4.71 4.71 0.00 4.09
2302 3213 4.521559 AGGAGCTCACGTTCCTCA 57.478 55.556 17.19 0.00 46.62 3.86
2310 3221 3.936203 ACGTTCCTCAAGGGCGCA 61.936 61.111 10.83 0.00 37.44 6.09
2406 3317 0.921256 AAGCAGGGGCCAAGGATAGT 60.921 55.000 4.39 0.00 42.56 2.12
2416 3327 2.359900 CCAAGGATAGTCAGTGCAACC 58.640 52.381 0.00 0.00 37.80 3.77
2436 3347 0.173255 GGTGCACCATGTACAATGGC 59.827 55.000 31.23 12.51 42.82 4.40
2466 3377 2.165167 CTGCTCCATGTCACCATGTTT 58.835 47.619 2.38 0.00 45.83 2.83
2487 3398 1.209504 TGTGCTAAGCATGGTAGGGAC 59.790 52.381 0.00 6.30 41.91 4.46
2561 3472 0.390492 TATGCTGAGGATGCTGACGG 59.610 55.000 0.00 0.00 0.00 4.79
2613 3524 3.479489 TGCATTCTGGATATGACGCATT 58.521 40.909 0.00 0.00 0.00 3.56
2782 3694 3.918258 GCAACATGCATGCATAGTTTG 57.082 42.857 31.73 29.56 44.26 2.93
2783 3695 2.605818 GCAACATGCATGCATAGTTTGG 59.394 45.455 31.73 23.14 44.26 3.28
2788 3700 5.653507 ACATGCATGCATAGTTTGGTTTAG 58.346 37.500 31.73 17.13 34.91 1.85
2808 3720 3.016736 AGAAAACATATTCCGGCTGTGG 58.983 45.455 0.00 0.00 0.00 4.17
2829 3742 8.627487 TGTGGTATCGAAATCAAAATTATTGC 57.373 30.769 0.00 0.00 0.00 3.56
2837 3750 8.303156 TCGAAATCAAAATTATTGCTCTCCAAA 58.697 29.630 0.00 0.00 36.92 3.28
2845 3758 9.643693 AAAATTATTGCTCTCCAAATAGTTGTG 57.356 29.630 1.80 0.00 36.92 3.33
2853 3766 4.887071 TCTCCAAATAGTTGTGTGCAAAGT 59.113 37.500 1.80 0.00 36.22 2.66
2961 4153 6.811253 ATTCGTGAAGTTGGCTGTATTTTA 57.189 33.333 0.00 0.00 0.00 1.52
2965 4157 5.618863 CGTGAAGTTGGCTGTATTTTATGCA 60.619 40.000 0.00 0.00 0.00 3.96
2972 4164 8.477256 AGTTGGCTGTATTTTATGCATGTATTT 58.523 29.630 10.16 0.00 0.00 1.40
2983 4175 4.880886 TGCATGTATTTGACCAGAATCG 57.119 40.909 0.00 0.00 0.00 3.34
2984 4176 3.065233 TGCATGTATTTGACCAGAATCGC 59.935 43.478 0.00 0.00 0.00 4.58
2985 4177 3.065233 GCATGTATTTGACCAGAATCGCA 59.935 43.478 0.00 0.00 0.00 5.10
2994 4186 1.094785 CCAGAATCGCACCGGAAAAT 58.905 50.000 9.46 0.00 0.00 1.82
3070 4262 2.166254 CACCCAAGCAAGTGACAAAACT 59.834 45.455 0.00 0.00 36.01 2.66
3072 4264 2.166254 CCCAAGCAAGTGACAAAACTGT 59.834 45.455 0.00 0.00 0.00 3.55
3092 4284 0.247736 AGTCGAGGATGTGCAAGGAC 59.752 55.000 0.00 0.00 0.00 3.85
3159 4351 2.612115 CCCTCCTCCCTGCCTTGT 60.612 66.667 0.00 0.00 0.00 3.16
3277 4470 2.045045 CCTTTCCTGGATGCGGCA 60.045 61.111 4.58 4.58 0.00 5.69
3303 4496 8.917088 ACTTCTATAAAGCATGCCAATAACAAT 58.083 29.630 15.66 0.00 0.00 2.71
3313 4506 7.175293 AGCATGCCAATAACAATTGACAAAAAT 59.825 29.630 15.66 0.00 33.55 1.82
3384 4579 9.609346 AAATTAGCCTAACGACTTAACATATGT 57.391 29.630 1.41 1.41 0.00 2.29
3385 4580 8.813643 ATTAGCCTAACGACTTAACATATGTC 57.186 34.615 9.23 0.00 0.00 3.06
3386 4581 6.216801 AGCCTAACGACTTAACATATGTCA 57.783 37.500 9.23 0.00 33.77 3.58
3387 4582 6.273825 AGCCTAACGACTTAACATATGTCAG 58.726 40.000 9.23 10.76 33.77 3.51
3388 4583 6.096423 AGCCTAACGACTTAACATATGTCAGA 59.904 38.462 17.81 2.30 33.77 3.27
3389 4584 6.924060 GCCTAACGACTTAACATATGTCAGAT 59.076 38.462 17.81 3.05 33.77 2.90
3390 4585 7.438459 GCCTAACGACTTAACATATGTCAGATT 59.562 37.037 17.81 12.18 33.77 2.40
3391 4586 9.961265 CCTAACGACTTAACATATGTCAGATTA 57.039 33.333 17.81 12.51 33.77 1.75
3407 4602 9.692749 ATGTCAGATTAATGATGAATGAATTGC 57.307 29.630 0.00 0.00 0.00 3.56
3408 4603 8.909923 TGTCAGATTAATGATGAATGAATTGCT 58.090 29.630 0.00 0.00 0.00 3.91
3412 4607 9.856488 AGATTAATGATGAATGAATTGCTATGC 57.144 29.630 0.00 0.00 0.00 3.14
3413 4608 8.997621 ATTAATGATGAATGAATTGCTATGCC 57.002 30.769 0.00 0.00 0.00 4.40
3414 4609 4.859304 TGATGAATGAATTGCTATGCCC 57.141 40.909 0.00 0.00 0.00 5.36
3415 4610 4.476297 TGATGAATGAATTGCTATGCCCT 58.524 39.130 0.00 0.00 0.00 5.19
3416 4611 4.279922 TGATGAATGAATTGCTATGCCCTG 59.720 41.667 0.00 0.00 0.00 4.45
3417 4612 3.900971 TGAATGAATTGCTATGCCCTGA 58.099 40.909 0.00 0.00 0.00 3.86
3418 4613 4.476297 TGAATGAATTGCTATGCCCTGAT 58.524 39.130 0.00 0.00 0.00 2.90
3419 4614 4.279922 TGAATGAATTGCTATGCCCTGATG 59.720 41.667 0.00 0.00 0.00 3.07
3420 4615 1.958579 TGAATTGCTATGCCCTGATGC 59.041 47.619 0.00 0.00 0.00 3.91
3421 4616 2.236766 GAATTGCTATGCCCTGATGCT 58.763 47.619 0.00 0.00 0.00 3.79
3422 4617 3.181441 TGAATTGCTATGCCCTGATGCTA 60.181 43.478 0.00 0.00 0.00 3.49
3425 4620 2.575532 TGCTATGCCCTGATGCTAAAC 58.424 47.619 0.00 0.00 0.00 2.01
3426 4621 2.092484 TGCTATGCCCTGATGCTAAACA 60.092 45.455 0.00 0.00 0.00 2.83
3430 4625 3.658757 TGCCCTGATGCTAAACAAAAC 57.341 42.857 0.00 0.00 0.00 2.43
3437 4632 5.181690 TGATGCTAAACAAAACAGGTGTC 57.818 39.130 0.00 0.00 0.00 3.67
3439 4634 4.893424 TGCTAAACAAAACAGGTGTCTC 57.107 40.909 0.00 0.00 0.00 3.36
3440 4635 4.265893 TGCTAAACAAAACAGGTGTCTCA 58.734 39.130 0.00 0.00 0.00 3.27
3441 4636 4.095782 TGCTAAACAAAACAGGTGTCTCAC 59.904 41.667 0.00 0.00 0.00 3.51
3442 4637 4.095782 GCTAAACAAAACAGGTGTCTCACA 59.904 41.667 2.41 0.00 35.86 3.58
3448 4643 5.296780 ACAAAACAGGTGTCTCACATAACAG 59.703 40.000 2.41 0.00 35.86 3.16
3450 4645 5.489792 AACAGGTGTCTCACATAACAGAT 57.510 39.130 2.41 0.00 35.86 2.90
3451 4646 5.489792 ACAGGTGTCTCACATAACAGATT 57.510 39.130 2.41 0.00 35.86 2.40
3457 4652 6.703607 GGTGTCTCACATAACAGATTCATAGG 59.296 42.308 2.41 0.00 35.86 2.57
3458 4653 7.417911 GGTGTCTCACATAACAGATTCATAGGA 60.418 40.741 2.41 0.00 35.86 2.94
3459 4654 7.651304 GTGTCTCACATAACAGATTCATAGGAG 59.349 40.741 0.00 0.00 34.08 3.69
3460 4655 7.561356 TGTCTCACATAACAGATTCATAGGAGA 59.439 37.037 0.00 0.00 0.00 3.71
3461 4656 8.417106 GTCTCACATAACAGATTCATAGGAGAA 58.583 37.037 0.00 0.00 0.00 2.87
3463 4658 8.311395 TCACATAACAGATTCATAGGAGAACT 57.689 34.615 0.00 0.00 0.00 3.01
3467 4662 5.508200 ACAGATTCATAGGAGAACTCGAC 57.492 43.478 0.00 0.00 0.00 4.20
3468 4663 5.197451 ACAGATTCATAGGAGAACTCGACT 58.803 41.667 0.00 0.00 0.00 4.18
3472 4667 7.646130 CAGATTCATAGGAGAACTCGACTTAAC 59.354 40.741 0.00 0.00 0.00 2.01
3475 4670 8.515695 TTCATAGGAGAACTCGACTTAACATA 57.484 34.615 0.00 0.00 0.00 2.29
3476 4671 8.693120 TCATAGGAGAACTCGACTTAACATAT 57.307 34.615 0.00 0.00 0.00 1.78
3480 4675 6.377429 AGGAGAACTCGACTTAACATATGTCA 59.623 38.462 9.23 0.00 33.77 3.58
3481 4676 6.693545 GGAGAACTCGACTTAACATATGTCAG 59.306 42.308 9.23 10.76 33.77 3.51
3482 4677 7.392494 AGAACTCGACTTAACATATGTCAGA 57.608 36.000 17.81 7.85 33.77 3.27
3483 4678 8.001881 AGAACTCGACTTAACATATGTCAGAT 57.998 34.615 17.81 3.05 33.77 2.90
3485 4680 9.731819 GAACTCGACTTAACATATGTCAGATTA 57.268 33.333 17.81 1.83 33.77 1.75
3504 4699 9.992910 TCAGATTAATTAATGAATATCATGCGC 57.007 29.630 15.39 0.00 37.15 6.09
3505 4700 8.940924 CAGATTAATTAATGAATATCATGCGCG 58.059 33.333 15.39 0.00 37.15 6.86
3508 4703 5.611796 ATTAATGAATATCATGCGCGTGT 57.388 34.783 27.72 17.62 37.15 4.49
3512 4905 4.231718 TGAATATCATGCGCGTGTACTA 57.768 40.909 27.72 17.78 0.00 1.82
3514 4907 5.945155 TGAATATCATGCGCGTGTACTATA 58.055 37.500 27.72 18.20 0.00 1.31
3516 4909 6.307077 TGAATATCATGCGCGTGTACTATAAC 59.693 38.462 27.72 18.07 0.00 1.89
3517 4910 3.423996 TCATGCGCGTGTACTATAACA 57.576 42.857 27.72 3.58 0.00 2.41
3523 4916 2.357009 CGCGTGTACTATAACAGAGGGT 59.643 50.000 0.00 0.00 0.00 4.34
3526 4919 4.261114 GCGTGTACTATAACAGAGGGTCTC 60.261 50.000 0.00 0.00 0.00 3.36
3528 4921 5.220815 CGTGTACTATAACAGAGGGTCTCAC 60.221 48.000 0.00 0.00 32.06 3.51
3533 4926 5.780793 ACTATAACAGAGGGTCTCACAGTTT 59.219 40.000 0.00 0.00 32.06 2.66
3534 4927 2.918712 ACAGAGGGTCTCACAGTTTG 57.081 50.000 0.00 0.00 32.06 2.93
3535 4928 1.417890 ACAGAGGGTCTCACAGTTTGG 59.582 52.381 0.00 0.00 32.06 3.28
3537 4930 2.104792 CAGAGGGTCTCACAGTTTGGAA 59.895 50.000 0.00 0.00 32.06 3.53
3538 4931 2.104963 AGAGGGTCTCACAGTTTGGAAC 59.895 50.000 0.00 0.00 32.06 3.62
3539 4932 1.143073 AGGGTCTCACAGTTTGGAACC 59.857 52.381 0.00 0.00 34.18 3.62
3541 4934 1.474498 GGTCTCACAGTTTGGAACCGT 60.474 52.381 0.00 0.00 0.00 4.83
3542 4935 2.224113 GGTCTCACAGTTTGGAACCGTA 60.224 50.000 0.00 0.00 0.00 4.02
3543 4936 3.460103 GTCTCACAGTTTGGAACCGTAA 58.540 45.455 0.00 0.00 0.00 3.18
3545 4938 4.151867 GTCTCACAGTTTGGAACCGTAATC 59.848 45.833 0.00 0.00 0.00 1.75
3546 4939 3.061322 TCACAGTTTGGAACCGTAATCG 58.939 45.455 0.00 0.00 0.00 3.34
3548 4941 2.803956 ACAGTTTGGAACCGTAATCGTG 59.196 45.455 0.00 0.00 35.01 4.35
3550 4943 1.465777 GTTTGGAACCGTAATCGTGGG 59.534 52.381 0.00 0.00 35.01 4.61
3551 4944 0.975135 TTGGAACCGTAATCGTGGGA 59.025 50.000 0.00 0.00 35.01 4.37
3552 4945 0.533491 TGGAACCGTAATCGTGGGAG 59.467 55.000 0.00 0.00 35.01 4.30
3553 4946 0.819582 GGAACCGTAATCGTGGGAGA 59.180 55.000 0.00 0.00 35.01 3.71
3554 4947 1.205417 GGAACCGTAATCGTGGGAGAA 59.795 52.381 0.00 0.00 35.01 2.87
3555 4948 2.537401 GAACCGTAATCGTGGGAGAAG 58.463 52.381 0.00 0.00 35.01 2.85
3556 4949 0.822164 ACCGTAATCGTGGGAGAAGG 59.178 55.000 0.00 0.00 35.01 3.46
3557 4950 0.104304 CCGTAATCGTGGGAGAAGGG 59.896 60.000 0.00 0.00 35.01 3.95
3561 4954 0.912486 AATCGTGGGAGAAGGGAAGG 59.088 55.000 0.00 0.00 0.00 3.46
3563 4956 2.592993 CGTGGGAGAAGGGAAGGCA 61.593 63.158 0.00 0.00 0.00 4.75
3564 4957 1.301293 GTGGGAGAAGGGAAGGCAG 59.699 63.158 0.00 0.00 0.00 4.85
3567 4960 0.618968 GGGAGAAGGGAAGGCAGAGA 60.619 60.000 0.00 0.00 0.00 3.10
3568 4961 0.829990 GGAGAAGGGAAGGCAGAGAG 59.170 60.000 0.00 0.00 0.00 3.20
3569 4962 0.177836 GAGAAGGGAAGGCAGAGAGC 59.822 60.000 0.00 0.00 44.65 4.09
3578 4971 2.202730 GCAGAGAGCGAGCCTCAC 60.203 66.667 13.28 0.00 43.31 3.51
3579 4972 2.999485 GCAGAGAGCGAGCCTCACA 61.999 63.158 13.28 0.00 43.31 3.58
3580 4973 1.815196 CAGAGAGCGAGCCTCACAT 59.185 57.895 13.28 0.00 43.31 3.21
3581 4974 1.028130 CAGAGAGCGAGCCTCACATA 58.972 55.000 13.28 0.00 43.31 2.29
3582 4975 1.612950 CAGAGAGCGAGCCTCACATAT 59.387 52.381 13.28 0.00 43.31 1.78
3583 4976 2.816672 CAGAGAGCGAGCCTCACATATA 59.183 50.000 13.28 0.00 43.31 0.86
3584 4977 2.817258 AGAGAGCGAGCCTCACATATAC 59.183 50.000 13.28 0.00 43.31 1.47
3585 4978 2.554462 GAGAGCGAGCCTCACATATACA 59.446 50.000 0.00 0.00 43.31 2.29
3587 4980 4.336280 AGAGCGAGCCTCACATATACATA 58.664 43.478 0.00 0.00 43.31 2.29
3588 4981 4.156922 AGAGCGAGCCTCACATATACATAC 59.843 45.833 0.00 0.00 43.31 2.39
3589 4982 3.193691 AGCGAGCCTCACATATACATACC 59.806 47.826 0.00 0.00 0.00 2.73
3590 4983 3.759418 CGAGCCTCACATATACATACCG 58.241 50.000 0.00 0.00 0.00 4.02
3592 4985 4.672024 CGAGCCTCACATATACATACCGAC 60.672 50.000 0.00 0.00 0.00 4.79
3595 4988 3.504906 CCTCACATATACATACCGACGGT 59.495 47.826 25.14 25.14 40.16 4.83
3596 4989 4.473199 CTCACATATACATACCGACGGTG 58.527 47.826 29.55 16.12 36.19 4.94
3597 4990 4.136051 TCACATATACATACCGACGGTGA 58.864 43.478 29.55 13.59 36.19 4.02
3600 4993 4.521639 ACATATACATACCGACGGTGATGT 59.478 41.667 29.55 28.98 36.19 3.06
3601 4994 3.637998 ATACATACCGACGGTGATGTC 57.362 47.619 29.14 0.00 36.19 3.06
3607 5000 3.706140 GACGGTGATGTCGCATCC 58.294 61.111 14.48 7.95 0.00 3.51
3608 5001 2.202743 ACGGTGATGTCGCATCCG 60.203 61.111 14.48 14.28 45.53 4.18
3609 5002 3.630148 CGGTGATGTCGCATCCGC 61.630 66.667 14.48 9.02 35.01 5.54
3610 5003 3.272334 GGTGATGTCGCATCCGCC 61.272 66.667 14.48 12.85 33.11 6.13
3611 5004 3.630148 GTGATGTCGCATCCGCCG 61.630 66.667 14.48 0.00 33.11 6.46
3612 5005 3.832492 TGATGTCGCATCCGCCGA 61.832 61.111 14.48 0.00 33.11 5.54
3615 5008 2.954020 GATGTCGCATCCGCCGAAGA 62.954 60.000 8.17 0.00 36.36 2.87
3617 5010 2.098233 GTCGCATCCGCCGAAGAAA 61.098 57.895 0.00 0.00 36.36 2.52
3619 5012 1.151777 TCGCATCCGCCGAAGAAATC 61.152 55.000 0.00 0.00 33.11 2.17
3624 5017 4.575245 CGCCGAAGAAATCGCCGC 62.575 66.667 0.00 0.00 45.59 6.53
3627 5020 2.883730 CGAAGAAATCGCCGCCGA 60.884 61.111 0.00 0.00 45.89 5.54
3643 5036 2.268920 GATGTGGAGCTGCGGGAA 59.731 61.111 0.00 0.00 0.00 3.97
3644 5037 1.817099 GATGTGGAGCTGCGGGAAG 60.817 63.158 0.00 0.00 0.00 3.46
3645 5038 3.335356 ATGTGGAGCTGCGGGAAGG 62.335 63.158 0.00 0.00 0.00 3.46
3646 5039 4.021925 GTGGAGCTGCGGGAAGGT 62.022 66.667 0.00 0.00 0.00 3.50
3647 5040 4.020617 TGGAGCTGCGGGAAGGTG 62.021 66.667 0.00 0.00 0.00 4.00
3648 5041 4.785453 GGAGCTGCGGGAAGGTGG 62.785 72.222 0.00 0.00 0.00 4.61
3649 5042 4.785453 GAGCTGCGGGAAGGTGGG 62.785 72.222 0.00 0.00 0.00 4.61
3656 5049 4.748144 GGGAAGGTGGGCCAGCTG 62.748 72.222 36.59 6.78 41.59 4.24
3657 5050 4.748144 GGAAGGTGGGCCAGCTGG 62.748 72.222 36.59 29.34 41.59 4.85
3658 5051 3.650950 GAAGGTGGGCCAGCTGGA 61.651 66.667 36.59 13.40 41.59 3.86
3659 5052 3.635268 GAAGGTGGGCCAGCTGGAG 62.635 68.421 36.59 11.62 41.59 3.86
3660 5053 4.990910 AGGTGGGCCAGCTGGAGT 62.991 66.667 35.64 13.19 40.87 3.85
3661 5054 3.009115 GGTGGGCCAGCTGGAGTA 61.009 66.667 37.21 17.61 37.39 2.59
3662 5055 2.269241 GTGGGCCAGCTGGAGTAC 59.731 66.667 37.21 24.45 37.39 2.73
3663 5056 2.122729 TGGGCCAGCTGGAGTACT 59.877 61.111 37.21 0.00 37.39 2.73
3664 5057 1.990060 TGGGCCAGCTGGAGTACTC 60.990 63.158 37.21 18.82 37.39 2.59
3673 5066 2.187163 GGAGTACTCCTTGCGCCC 59.813 66.667 31.12 5.95 46.16 6.13
3674 5067 2.187163 GAGTACTCCTTGCGCCCC 59.813 66.667 12.13 0.00 0.00 5.80
3675 5068 2.284699 AGTACTCCTTGCGCCCCT 60.285 61.111 4.18 0.00 0.00 4.79
3676 5069 1.001248 AGTACTCCTTGCGCCCCTA 59.999 57.895 4.18 0.00 0.00 3.53
3677 5070 0.398664 AGTACTCCTTGCGCCCCTAT 60.399 55.000 4.18 0.00 0.00 2.57
3678 5071 0.033642 GTACTCCTTGCGCCCCTATC 59.966 60.000 4.18 0.00 0.00 2.08
3679 5072 1.461091 TACTCCTTGCGCCCCTATCG 61.461 60.000 4.18 0.00 0.00 2.92
3680 5073 3.521529 CTCCTTGCGCCCCTATCGG 62.522 68.421 4.18 0.00 0.00 4.18
3681 5074 3.546543 CCTTGCGCCCCTATCGGA 61.547 66.667 4.18 0.00 0.00 4.55
3682 5075 2.029666 CTTGCGCCCCTATCGGAG 59.970 66.667 4.18 0.00 0.00 4.63
3688 5081 2.282958 CCCCTATCGGAGCGCCTA 60.283 66.667 2.29 0.00 0.00 3.93
3689 5082 2.344203 CCCCTATCGGAGCGCCTAG 61.344 68.421 2.29 0.02 0.00 3.02
3690 5083 1.604023 CCCTATCGGAGCGCCTAGT 60.604 63.158 2.29 0.00 0.00 2.57
3691 5084 1.179814 CCCTATCGGAGCGCCTAGTT 61.180 60.000 2.29 0.00 0.00 2.24
3692 5085 0.039074 CCTATCGGAGCGCCTAGTTG 60.039 60.000 2.29 0.00 0.00 3.16
3693 5086 0.039074 CTATCGGAGCGCCTAGTTGG 60.039 60.000 2.29 0.00 39.35 3.77
3707 5100 3.375299 CCTAGTTGGCAAGTACATTGAGC 59.625 47.826 10.68 0.00 41.83 4.26
3708 5101 1.806542 AGTTGGCAAGTACATTGAGCG 59.193 47.619 5.60 0.00 41.83 5.03
3709 5102 1.535462 GTTGGCAAGTACATTGAGCGT 59.465 47.619 0.00 0.00 41.83 5.07
3710 5103 1.438651 TGGCAAGTACATTGAGCGTC 58.561 50.000 8.63 0.00 41.83 5.19
3711 5104 1.001974 TGGCAAGTACATTGAGCGTCT 59.998 47.619 8.63 0.00 41.83 4.18
3712 5105 1.661112 GGCAAGTACATTGAGCGTCTC 59.339 52.381 8.63 0.58 41.83 3.36
3713 5106 1.321743 GCAAGTACATTGAGCGTCTCG 59.678 52.381 8.63 0.00 41.83 4.04
3714 5107 2.863739 CAAGTACATTGAGCGTCTCGA 58.136 47.619 0.00 0.21 41.83 4.04
3715 5108 3.242518 CAAGTACATTGAGCGTCTCGAA 58.757 45.455 0.00 0.00 41.83 3.71
3716 5109 3.138205 AGTACATTGAGCGTCTCGAAG 57.862 47.619 0.00 0.73 32.35 3.79
3717 5110 2.159366 AGTACATTGAGCGTCTCGAAGG 60.159 50.000 0.00 3.03 32.35 3.46
3718 5111 0.108615 ACATTGAGCGTCTCGAAGGG 60.109 55.000 0.00 0.00 32.35 3.95
3719 5112 1.153549 ATTGAGCGTCTCGAAGGGC 60.154 57.895 1.67 0.00 32.35 5.19
3720 5113 1.888436 ATTGAGCGTCTCGAAGGGCA 61.888 55.000 4.38 0.00 32.35 5.36
3721 5114 2.507324 GAGCGTCTCGAAGGGCAC 60.507 66.667 4.38 0.00 0.00 5.01
3722 5115 4.421479 AGCGTCTCGAAGGGCACG 62.421 66.667 4.38 0.00 35.32 5.34
3723 5116 4.719369 GCGTCTCGAAGGGCACGT 62.719 66.667 0.00 0.00 34.69 4.49
3724 5117 2.504244 CGTCTCGAAGGGCACGTC 60.504 66.667 0.00 0.00 0.00 4.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 0.464554 GCCGGCTCCAGCTAATCTTT 60.465 55.000 22.15 0.00 41.70 2.52
145 146 7.222224 CCATCTTCTCTTTTTATTGCTGCATTC 59.778 37.037 1.84 0.00 0.00 2.67
146 147 7.039882 CCATCTTCTCTTTTTATTGCTGCATT 58.960 34.615 1.84 2.15 0.00 3.56
185 187 0.037232 GGAAGAACAGGAGACACCCG 60.037 60.000 0.00 0.00 40.05 5.28
193 195 4.640201 CACAAAGAAGTTGGAAGAACAGGA 59.360 41.667 0.00 0.00 41.97 3.86
196 198 3.699038 CCCACAAAGAAGTTGGAAGAACA 59.301 43.478 0.00 0.00 41.97 3.18
209 211 3.172106 TCCACGCCCCCACAAAGA 61.172 61.111 0.00 0.00 0.00 2.52
233 235 3.625099 CCGTGACTCCGGGGTATT 58.375 61.111 7.16 0.00 44.32 1.89
295 297 0.251341 AAACCCCTCAAGCTTGCGAT 60.251 50.000 21.99 1.92 0.00 4.58
335 337 1.004440 GCGACCTTTGAGCAGTCCT 60.004 57.895 0.00 0.00 0.00 3.85
391 393 7.062957 CCAATTTCTAACAAGATAGGGACCAT 58.937 38.462 0.00 0.00 0.00 3.55
395 397 7.635971 GCTCTCCAATTTCTAACAAGATAGGGA 60.636 40.741 0.00 0.00 0.00 4.20
459 463 4.284746 GCAGGACCATTAGCCTATCTTACT 59.715 45.833 0.00 0.00 32.03 2.24
523 533 4.039366 GGGAGTACTATCGATCCAGCTTTT 59.961 45.833 0.00 0.00 33.24 2.27
554 564 2.758089 GCCAACAGGCTGCTGATCG 61.758 63.158 19.07 4.04 45.21 3.69
585 595 5.048013 AGAGCTTTATTGCTTAAAGGCGTTT 60.048 36.000 9.63 9.63 44.69 3.60
639 649 3.312736 ACAATGTTCTCAACCAGGGTT 57.687 42.857 0.00 0.00 39.13 4.11
640 650 3.312736 AACAATGTTCTCAACCAGGGT 57.687 42.857 0.00 0.00 0.00 4.34
641 651 3.384467 ACAAACAATGTTCTCAACCAGGG 59.616 43.478 0.00 0.00 40.06 4.45
642 652 4.654091 ACAAACAATGTTCTCAACCAGG 57.346 40.909 0.00 0.00 40.06 4.45
653 663 3.642141 AGTCCCTGGAAACAAACAATGT 58.358 40.909 0.00 0.00 46.82 2.71
654 664 4.670896 AAGTCCCTGGAAACAAACAATG 57.329 40.909 0.00 0.00 42.06 2.82
655 665 6.239572 CCAATAAGTCCCTGGAAACAAACAAT 60.240 38.462 0.00 0.00 42.06 2.71
656 666 5.069781 CCAATAAGTCCCTGGAAACAAACAA 59.930 40.000 0.00 0.00 42.06 2.83
666 676 3.526019 TCCCTAAACCAATAAGTCCCTGG 59.474 47.826 0.00 0.00 36.24 4.45
695 705 7.147355 GGTTTAGATGGGACTTATAGGGACTTT 60.147 40.741 0.00 0.00 41.75 2.66
727 737 5.904169 ACTTTAAGTCCCTATAAGTCCCTCC 59.096 44.000 0.00 0.00 0.00 4.30
769 779 5.788014 AGTCCCTCCTTGAGAGTCTTATTTT 59.212 40.000 0.00 0.00 41.47 1.82
819 829 7.514721 TGTTTGGTTCCTGAGACTTATAAGTT 58.485 34.615 18.96 9.34 39.88 2.66
845 855 4.567116 CCAAGTCCCTAAAAAGTCCCTACC 60.567 50.000 0.00 0.00 0.00 3.18
918 928 0.952010 TGCGTTTCGGAGTTTAGGCC 60.952 55.000 0.00 0.00 0.00 5.19
920 930 0.437295 CGTGCGTTTCGGAGTTTAGG 59.563 55.000 0.00 0.00 0.00 2.69
922 932 1.269206 ACTCGTGCGTTTCGGAGTTTA 60.269 47.619 0.00 0.00 0.00 2.01
923 933 0.529119 ACTCGTGCGTTTCGGAGTTT 60.529 50.000 0.00 0.00 0.00 2.66
926 936 0.982673 CTAACTCGTGCGTTTCGGAG 59.017 55.000 0.00 0.00 0.00 4.63
928 938 1.967762 TACTAACTCGTGCGTTTCGG 58.032 50.000 0.00 0.00 0.00 4.30
929 939 2.720578 TGTTACTAACTCGTGCGTTTCG 59.279 45.455 0.71 0.00 0.00 3.46
930 940 4.375706 CCTTGTTACTAACTCGTGCGTTTC 60.376 45.833 0.71 0.00 0.00 2.78
931 941 3.492011 CCTTGTTACTAACTCGTGCGTTT 59.508 43.478 0.71 0.00 0.00 3.60
932 942 3.054878 CCTTGTTACTAACTCGTGCGTT 58.945 45.455 0.71 0.00 0.00 4.84
933 943 2.294233 TCCTTGTTACTAACTCGTGCGT 59.706 45.455 0.71 0.00 0.00 5.24
935 945 5.398711 CGATATCCTTGTTACTAACTCGTGC 59.601 44.000 0.00 0.00 0.00 5.34
936 946 6.414109 CACGATATCCTTGTTACTAACTCGTG 59.586 42.308 16.60 16.60 40.80 4.35
937 947 6.094603 ACACGATATCCTTGTTACTAACTCGT 59.905 38.462 0.00 3.17 34.22 4.18
938 948 6.493116 ACACGATATCCTTGTTACTAACTCG 58.507 40.000 0.00 2.63 0.00 4.18
939 949 9.793252 TTTACACGATATCCTTGTTACTAACTC 57.207 33.333 9.34 0.00 0.00 3.01
965 975 7.127339 TGACCTAGCTAGGATATCCTTGTTTTT 59.873 37.037 40.40 16.95 46.09 1.94
967 977 6.143915 TGACCTAGCTAGGATATCCTTGTTT 58.856 40.000 40.40 17.58 46.09 2.83
984 994 8.186821 GGATCTGTTTTGATTGATTTGACCTAG 58.813 37.037 0.00 0.00 0.00 3.02
1028 1038 3.817647 AGAATTCACAACTGGCTTCAGAC 59.182 43.478 8.44 0.00 40.86 3.51
1054 1264 1.050204 TGCAGCAAAAGAAAGGGCAT 58.950 45.000 0.00 0.00 0.00 4.40
1081 1291 3.259876 ACCAAAATCTACCGTGTCTGCTA 59.740 43.478 0.00 0.00 0.00 3.49
1082 1292 2.038557 ACCAAAATCTACCGTGTCTGCT 59.961 45.455 0.00 0.00 0.00 4.24
1084 1294 4.817517 ACTACCAAAATCTACCGTGTCTG 58.182 43.478 0.00 0.00 0.00 3.51
1101 1318 6.336842 TCTAACTTGTCTGGTGTAACTACC 57.663 41.667 0.00 0.00 41.24 3.18
1102 1319 9.570488 CTTATCTAACTTGTCTGGTGTAACTAC 57.430 37.037 0.00 0.00 36.74 2.73
1103 1320 8.248945 GCTTATCTAACTTGTCTGGTGTAACTA 58.751 37.037 0.00 0.00 36.74 2.24
1104 1321 7.097834 GCTTATCTAACTTGTCTGGTGTAACT 58.902 38.462 0.00 0.00 36.74 2.24
1105 1322 6.872020 TGCTTATCTAACTTGTCTGGTGTAAC 59.128 38.462 0.00 0.00 0.00 2.50
1106 1323 6.999950 TGCTTATCTAACTTGTCTGGTGTAA 58.000 36.000 0.00 0.00 0.00 2.41
1107 1324 6.436218 TCTGCTTATCTAACTTGTCTGGTGTA 59.564 38.462 0.00 0.00 0.00 2.90
1138 1357 9.528489 TTAGCAAGTGGAAGTTAGGAATAAAAT 57.472 29.630 0.00 0.00 0.00 1.82
1141 1360 8.927675 TTTTAGCAAGTGGAAGTTAGGAATAA 57.072 30.769 0.00 0.00 0.00 1.40
1143 1362 8.422577 AATTTTAGCAAGTGGAAGTTAGGAAT 57.577 30.769 0.00 0.00 0.00 3.01
1175 1394 3.665745 ATTGTGACCACTTTGATTGGC 57.334 42.857 1.62 0.00 37.69 4.52
1344 1570 0.033366 CACGTGGATGTGTGACCAGA 59.967 55.000 7.95 0.00 38.36 3.86
1351 1577 2.749541 CGTATGCACGTGGATGTGT 58.250 52.632 30.05 9.47 43.31 3.72
1421 1674 2.052690 ACGTACAGATGCCGCCTCT 61.053 57.895 0.00 0.00 0.00 3.69
1466 1722 3.617706 CACGTCGAGTCTGTAGATACTGT 59.382 47.826 0.00 0.00 0.00 3.55
1547 1803 4.240103 TCTGCTGCGGCACACACT 62.240 61.111 18.37 0.00 44.28 3.55
1548 1804 4.017877 GTCTGCTGCGGCACACAC 62.018 66.667 18.37 9.92 44.28 3.82
1614 1870 0.965363 GTGCCCATGAACCGACCAAT 60.965 55.000 0.00 0.00 0.00 3.16
1762 2030 2.665185 GCTCCGGTGCGTGAAACT 60.665 61.111 13.48 0.00 31.75 2.66
1987 2898 3.842126 CGCGCATGACTGGACGTG 61.842 66.667 8.75 0.00 0.00 4.49
2048 2959 1.679898 GTGTCCAGGGAGAAGGTGG 59.320 63.158 0.00 0.00 0.00 4.61
2144 3055 2.151049 AACCCACGCGTCTAGGTGAC 62.151 60.000 21.95 0.00 42.06 3.67
2241 3152 4.740822 GGCAATGGCTCGGGTGGT 62.741 66.667 0.00 0.00 40.87 4.16
2292 3203 3.423154 GCGCCCTTGAGGAACGTG 61.423 66.667 0.00 0.00 38.24 4.49
2344 3255 2.380410 CCTCGACGAGGCAAAACCG 61.380 63.158 29.77 5.06 43.29 4.44
2390 3301 0.471617 CTGACTATCCTTGGCCCCTG 59.528 60.000 0.00 0.00 0.00 4.45
2391 3302 0.044855 ACTGACTATCCTTGGCCCCT 59.955 55.000 0.00 0.00 0.00 4.79
2392 3303 0.181350 CACTGACTATCCTTGGCCCC 59.819 60.000 0.00 0.00 0.00 5.80
2416 3327 0.451383 CCATTGTACATGGTGCACCG 59.549 55.000 30.07 19.43 39.43 4.94
2428 3339 2.445427 CAGGTGGTCATTGCCATTGTA 58.555 47.619 3.64 0.00 41.08 2.41
2436 3347 1.100510 CATGGAGCAGGTGGTCATTG 58.899 55.000 11.10 4.30 43.82 2.82
2466 3377 1.912731 TCCCTACCATGCTTAGCACAA 59.087 47.619 9.82 0.00 43.04 3.33
2561 3472 3.170791 TCTCAACTGGATCATCTTCGC 57.829 47.619 0.00 0.00 0.00 4.70
2613 3524 2.568062 TGGGCAACATTAGGAAGACGTA 59.432 45.455 0.00 0.00 39.74 3.57
2653 3564 6.412362 AGTTGACACATTAACAGAGACTCT 57.588 37.500 0.00 0.00 0.00 3.24
2766 3678 5.893687 TCTAAACCAAACTATGCATGCATG 58.106 37.500 37.43 28.38 37.82 4.06
2769 3681 6.644592 TGTTTTCTAAACCAAACTATGCATGC 59.355 34.615 11.82 11.82 34.52 4.06
2781 3693 5.124776 CAGCCGGAATATGTTTTCTAAACCA 59.875 40.000 5.05 0.00 0.00 3.67
2782 3694 5.124936 ACAGCCGGAATATGTTTTCTAAACC 59.875 40.000 5.05 0.00 0.00 3.27
2783 3695 6.027749 CACAGCCGGAATATGTTTTCTAAAC 58.972 40.000 5.05 0.00 0.00 2.01
2788 3700 2.752903 ACCACAGCCGGAATATGTTTTC 59.247 45.455 5.05 0.00 0.00 2.29
2808 3720 9.387123 GGAGAGCAATAATTTTGATTTCGATAC 57.613 33.333 0.00 0.00 0.00 2.24
2829 3742 5.009010 ACTTTGCACACAACTATTTGGAGAG 59.991 40.000 0.00 0.00 37.00 3.20
2837 3750 8.575589 TCAATTGATTACTTTGCACACAACTAT 58.424 29.630 3.38 0.00 34.87 2.12
2845 3758 6.038356 CCCTCATCAATTGATTACTTTGCAC 58.962 40.000 18.41 0.00 32.72 4.57
2853 3766 7.664552 AATTTGAGCCCTCATCAATTGATTA 57.335 32.000 18.41 10.07 39.64 1.75
2889 4031 5.617528 TGGCCCGTAACTAAAATCTGATA 57.382 39.130 0.00 0.00 0.00 2.15
2890 4032 4.497291 TGGCCCGTAACTAAAATCTGAT 57.503 40.909 0.00 0.00 0.00 2.90
2895 4037 8.532819 TCAATAATTTTGGCCCGTAACTAAAAT 58.467 29.630 0.00 0.61 33.71 1.82
2900 4092 5.986501 TTCAATAATTTTGGCCCGTAACT 57.013 34.783 0.00 0.00 0.00 2.24
2905 4097 7.254727 CCACATAATTTCAATAATTTTGGCCCG 60.255 37.037 0.00 0.00 0.00 6.13
2944 4136 6.332630 ACATGCATAAAATACAGCCAACTTC 58.667 36.000 0.00 0.00 0.00 3.01
2947 4139 8.542132 CAAATACATGCATAAAATACAGCCAAC 58.458 33.333 0.00 0.00 0.00 3.77
2961 4153 4.261322 GCGATTCTGGTCAAATACATGCAT 60.261 41.667 0.00 0.00 0.00 3.96
2965 4157 3.627577 GGTGCGATTCTGGTCAAATACAT 59.372 43.478 0.00 0.00 0.00 2.29
2972 4164 1.822114 TTCCGGTGCGATTCTGGTCA 61.822 55.000 0.00 0.00 33.44 4.02
2981 4173 1.673009 GTGGGATTTTCCGGTGCGA 60.673 57.895 0.00 0.00 37.43 5.10
2983 4175 1.304134 AGGTGGGATTTTCCGGTGC 60.304 57.895 0.00 0.00 37.43 5.01
2984 4176 0.328258 AGAGGTGGGATTTTCCGGTG 59.672 55.000 0.00 0.00 37.43 4.94
2985 4177 0.328258 CAGAGGTGGGATTTTCCGGT 59.672 55.000 0.00 0.00 37.43 5.28
2994 4186 2.947532 CGCAAGAGCAGAGGTGGGA 61.948 63.158 0.00 0.00 42.27 4.37
3070 4262 1.204704 CCTTGCACATCCTCGACTACA 59.795 52.381 0.00 0.00 0.00 2.74
3072 4264 1.476891 GTCCTTGCACATCCTCGACTA 59.523 52.381 0.00 0.00 0.00 2.59
3092 4284 1.649664 CCTTGAGGAATGTGAGCTCG 58.350 55.000 9.64 0.00 37.39 5.03
3208 4400 2.271497 GAGACGAGGACTCCCCGA 59.729 66.667 5.92 0.00 40.87 5.14
3238 4431 2.613506 CCTTGGCCCACGTCGAAAC 61.614 63.158 0.00 0.00 0.00 2.78
3277 4470 7.880160 TGTTATTGGCATGCTTTATAGAAGT 57.120 32.000 18.92 0.00 0.00 3.01
3313 4506 9.747898 TGTTTTCTCTTAGCTATTTTTATGGGA 57.252 29.630 0.00 0.00 0.00 4.37
3333 4528 5.054390 TGTTTGACCTCAGTTGTGTTTTC 57.946 39.130 0.00 0.00 0.00 2.29
3362 4557 7.283807 TCTGACATATGTTAAGTCGTTAGGCTA 59.716 37.037 10.30 0.00 35.09 3.93
3381 4576 9.692749 GCAATTCATTCATCATTAATCTGACAT 57.307 29.630 0.00 0.00 0.00 3.06
3382 4577 8.909923 AGCAATTCATTCATCATTAATCTGACA 58.090 29.630 0.00 0.00 0.00 3.58
3386 4581 9.856488 GCATAGCAATTCATTCATCATTAATCT 57.144 29.630 0.00 0.00 0.00 2.40
3387 4582 9.084164 GGCATAGCAATTCATTCATCATTAATC 57.916 33.333 0.00 0.00 0.00 1.75
3388 4583 8.038944 GGGCATAGCAATTCATTCATCATTAAT 58.961 33.333 0.00 0.00 0.00 1.40
3389 4584 7.233962 AGGGCATAGCAATTCATTCATCATTAA 59.766 33.333 0.00 0.00 0.00 1.40
3390 4585 6.722590 AGGGCATAGCAATTCATTCATCATTA 59.277 34.615 0.00 0.00 0.00 1.90
3391 4586 5.542635 AGGGCATAGCAATTCATTCATCATT 59.457 36.000 0.00 0.00 0.00 2.57
3392 4587 5.047306 CAGGGCATAGCAATTCATTCATCAT 60.047 40.000 0.00 0.00 0.00 2.45
3393 4588 4.279922 CAGGGCATAGCAATTCATTCATCA 59.720 41.667 0.00 0.00 0.00 3.07
3394 4589 4.521639 TCAGGGCATAGCAATTCATTCATC 59.478 41.667 0.00 0.00 0.00 2.92
3395 4590 4.476297 TCAGGGCATAGCAATTCATTCAT 58.524 39.130 0.00 0.00 0.00 2.57
3396 4591 3.900971 TCAGGGCATAGCAATTCATTCA 58.099 40.909 0.00 0.00 0.00 2.57
3397 4592 4.806330 CATCAGGGCATAGCAATTCATTC 58.194 43.478 0.00 0.00 0.00 2.67
3398 4593 3.006537 GCATCAGGGCATAGCAATTCATT 59.993 43.478 0.00 0.00 0.00 2.57
3399 4594 2.561419 GCATCAGGGCATAGCAATTCAT 59.439 45.455 0.00 0.00 0.00 2.57
3400 4595 1.958579 GCATCAGGGCATAGCAATTCA 59.041 47.619 0.00 0.00 0.00 2.57
3401 4596 2.236766 AGCATCAGGGCATAGCAATTC 58.763 47.619 0.00 0.00 35.83 2.17
3402 4597 2.376695 AGCATCAGGGCATAGCAATT 57.623 45.000 0.00 0.00 35.83 2.32
3403 4598 3.513909 TTAGCATCAGGGCATAGCAAT 57.486 42.857 0.00 0.00 35.83 3.56
3404 4599 2.951642 GTTTAGCATCAGGGCATAGCAA 59.048 45.455 0.00 0.00 35.83 3.91
3405 4600 2.092484 TGTTTAGCATCAGGGCATAGCA 60.092 45.455 0.00 0.00 35.83 3.49
3406 4601 2.575532 TGTTTAGCATCAGGGCATAGC 58.424 47.619 0.00 0.00 35.83 2.97
3407 4602 5.105797 TGTTTTGTTTAGCATCAGGGCATAG 60.106 40.000 0.00 0.00 35.83 2.23
3408 4603 4.769488 TGTTTTGTTTAGCATCAGGGCATA 59.231 37.500 0.00 0.00 35.83 3.14
3409 4604 3.577848 TGTTTTGTTTAGCATCAGGGCAT 59.422 39.130 0.00 0.00 35.83 4.40
3410 4605 2.961741 TGTTTTGTTTAGCATCAGGGCA 59.038 40.909 0.00 0.00 35.83 5.36
3411 4606 3.578688 CTGTTTTGTTTAGCATCAGGGC 58.421 45.455 0.00 0.00 0.00 5.19
3412 4607 3.573967 ACCTGTTTTGTTTAGCATCAGGG 59.426 43.478 15.01 0.00 41.05 4.45
3413 4608 4.037923 ACACCTGTTTTGTTTAGCATCAGG 59.962 41.667 0.00 0.00 41.73 3.86
3414 4609 5.009010 AGACACCTGTTTTGTTTAGCATCAG 59.991 40.000 0.00 0.00 0.00 2.90
3415 4610 4.887071 AGACACCTGTTTTGTTTAGCATCA 59.113 37.500 0.00 0.00 0.00 3.07
3416 4611 5.008613 TGAGACACCTGTTTTGTTTAGCATC 59.991 40.000 0.00 0.00 0.00 3.91
3417 4612 4.887071 TGAGACACCTGTTTTGTTTAGCAT 59.113 37.500 0.00 0.00 0.00 3.79
3418 4613 4.095782 GTGAGACACCTGTTTTGTTTAGCA 59.904 41.667 0.00 0.00 0.00 3.49
3419 4614 4.095782 TGTGAGACACCTGTTTTGTTTAGC 59.904 41.667 0.00 0.00 32.73 3.09
3420 4615 5.811399 TGTGAGACACCTGTTTTGTTTAG 57.189 39.130 0.00 0.00 32.73 1.85
3421 4616 7.337184 TGTTATGTGAGACACCTGTTTTGTTTA 59.663 33.333 0.00 0.00 32.73 2.01
3422 4617 6.151985 TGTTATGTGAGACACCTGTTTTGTTT 59.848 34.615 0.00 0.00 32.73 2.83
3425 4620 5.527214 TCTGTTATGTGAGACACCTGTTTTG 59.473 40.000 0.00 0.00 32.73 2.44
3426 4621 5.680619 TCTGTTATGTGAGACACCTGTTTT 58.319 37.500 0.00 0.00 32.73 2.43
3430 4625 5.482006 TGAATCTGTTATGTGAGACACCTG 58.518 41.667 0.00 0.00 32.73 4.00
3437 4632 8.420222 AGTTCTCCTATGAATCTGTTATGTGAG 58.580 37.037 0.00 0.00 0.00 3.51
3439 4634 7.380870 CGAGTTCTCCTATGAATCTGTTATGTG 59.619 40.741 0.00 0.00 0.00 3.21
3440 4635 7.285629 TCGAGTTCTCCTATGAATCTGTTATGT 59.714 37.037 0.00 0.00 0.00 2.29
3441 4636 7.593273 GTCGAGTTCTCCTATGAATCTGTTATG 59.407 40.741 0.00 0.00 0.00 1.90
3442 4637 7.504238 AGTCGAGTTCTCCTATGAATCTGTTAT 59.496 37.037 0.00 0.00 0.00 1.89
3448 4643 7.481642 TGTTAAGTCGAGTTCTCCTATGAATC 58.518 38.462 9.20 0.00 0.00 2.52
3450 4645 6.829229 TGTTAAGTCGAGTTCTCCTATGAA 57.171 37.500 9.20 0.00 0.00 2.57
3451 4646 8.568794 CATATGTTAAGTCGAGTTCTCCTATGA 58.431 37.037 9.20 0.00 0.00 2.15
3457 4652 7.473366 TCTGACATATGTTAAGTCGAGTTCTC 58.527 38.462 10.30 4.71 35.09 2.87
3458 4653 7.392494 TCTGACATATGTTAAGTCGAGTTCT 57.608 36.000 10.30 0.00 35.09 3.01
3459 4654 8.635877 AATCTGACATATGTTAAGTCGAGTTC 57.364 34.615 10.30 0.00 35.09 3.01
3480 4675 8.668353 ACGCGCATGATATTCATTAATTAATCT 58.332 29.630 5.73 0.00 34.28 2.40
3481 4676 8.727733 CACGCGCATGATATTCATTAATTAATC 58.272 33.333 5.73 0.00 34.28 1.75
3482 4677 8.236586 ACACGCGCATGATATTCATTAATTAAT 58.763 29.630 11.87 4.81 34.28 1.40
3483 4678 7.580600 ACACGCGCATGATATTCATTAATTAA 58.419 30.769 11.87 0.00 34.28 1.40
3485 4680 6.000891 ACACGCGCATGATATTCATTAATT 57.999 33.333 11.87 0.00 34.28 1.40
3486 4681 5.611796 ACACGCGCATGATATTCATTAAT 57.388 34.783 11.87 0.00 34.28 1.40
3488 4683 5.227152 AGTACACGCGCATGATATTCATTA 58.773 37.500 11.87 0.00 34.28 1.90
3490 4685 3.653344 AGTACACGCGCATGATATTCAT 58.347 40.909 11.87 0.00 37.65 2.57
3491 4686 3.092334 AGTACACGCGCATGATATTCA 57.908 42.857 11.87 0.00 0.00 2.57
3492 4687 6.307077 TGTTATAGTACACGCGCATGATATTC 59.693 38.462 11.87 3.91 0.00 1.75
3494 4689 5.705902 TGTTATAGTACACGCGCATGATAT 58.294 37.500 11.87 8.07 0.00 1.63
3495 4690 5.049267 TCTGTTATAGTACACGCGCATGATA 60.049 40.000 11.87 0.00 0.00 2.15
3497 4692 3.065648 TCTGTTATAGTACACGCGCATGA 59.934 43.478 11.87 0.00 0.00 3.07
3498 4693 3.368495 TCTGTTATAGTACACGCGCATG 58.632 45.455 5.73 4.48 0.00 4.06
3499 4694 3.550233 CCTCTGTTATAGTACACGCGCAT 60.550 47.826 5.73 0.00 0.00 4.73
3500 4695 2.223409 CCTCTGTTATAGTACACGCGCA 60.223 50.000 5.73 0.00 0.00 6.09
3501 4696 2.382519 CCTCTGTTATAGTACACGCGC 58.617 52.381 5.73 0.00 0.00 6.86
3502 4697 2.357009 ACCCTCTGTTATAGTACACGCG 59.643 50.000 3.53 3.53 0.00 6.01
3503 4698 3.631227 AGACCCTCTGTTATAGTACACGC 59.369 47.826 0.00 0.00 0.00 5.34
3504 4699 4.880120 TGAGACCCTCTGTTATAGTACACG 59.120 45.833 0.00 0.00 0.00 4.49
3505 4700 5.651139 TGTGAGACCCTCTGTTATAGTACAC 59.349 44.000 0.00 0.00 0.00 2.90
3508 4703 6.075949 ACTGTGAGACCCTCTGTTATAGTA 57.924 41.667 0.00 0.00 0.00 1.82
3512 4905 4.263068 CCAAACTGTGAGACCCTCTGTTAT 60.263 45.833 0.00 0.00 0.00 1.89
3514 4907 2.158755 CCAAACTGTGAGACCCTCTGTT 60.159 50.000 0.00 0.00 0.00 3.16
3516 4909 1.694150 TCCAAACTGTGAGACCCTCTG 59.306 52.381 0.00 0.00 0.00 3.35
3517 4910 2.103153 TCCAAACTGTGAGACCCTCT 57.897 50.000 0.00 0.00 0.00 3.69
3528 4921 2.158841 CCACGATTACGGTTCCAAACTG 59.841 50.000 0.00 0.00 44.46 3.16
3533 4926 0.533491 CTCCCACGATTACGGTTCCA 59.467 55.000 0.00 0.00 44.46 3.53
3534 4927 0.819582 TCTCCCACGATTACGGTTCC 59.180 55.000 0.00 0.00 44.46 3.62
3535 4928 2.537401 CTTCTCCCACGATTACGGTTC 58.463 52.381 0.00 0.00 44.46 3.62
3537 4930 0.822164 CCTTCTCCCACGATTACGGT 59.178 55.000 0.00 0.00 44.46 4.83
3538 4931 0.104304 CCCTTCTCCCACGATTACGG 59.896 60.000 0.00 0.00 44.46 4.02
3539 4932 1.108776 TCCCTTCTCCCACGATTACG 58.891 55.000 0.00 0.00 45.75 3.18
3541 4934 2.116238 CCTTCCCTTCTCCCACGATTA 58.884 52.381 0.00 0.00 0.00 1.75
3542 4935 0.912486 CCTTCCCTTCTCCCACGATT 59.088 55.000 0.00 0.00 0.00 3.34
3543 4936 1.627297 GCCTTCCCTTCTCCCACGAT 61.627 60.000 0.00 0.00 0.00 3.73
3545 4938 2.269241 GCCTTCCCTTCTCCCACG 59.731 66.667 0.00 0.00 0.00 4.94
3546 4939 1.201429 TCTGCCTTCCCTTCTCCCAC 61.201 60.000 0.00 0.00 0.00 4.61
3548 4941 0.618968 TCTCTGCCTTCCCTTCTCCC 60.619 60.000 0.00 0.00 0.00 4.30
3550 4943 0.177836 GCTCTCTGCCTTCCCTTCTC 59.822 60.000 0.00 0.00 35.15 2.87
3551 4944 1.612395 CGCTCTCTGCCTTCCCTTCT 61.612 60.000 0.00 0.00 38.78 2.85
3552 4945 1.153469 CGCTCTCTGCCTTCCCTTC 60.153 63.158 0.00 0.00 38.78 3.46
3553 4946 1.610673 TCGCTCTCTGCCTTCCCTT 60.611 57.895 0.00 0.00 38.78 3.95
3554 4947 2.038007 TCGCTCTCTGCCTTCCCT 59.962 61.111 0.00 0.00 38.78 4.20
3555 4948 2.498726 CTCGCTCTCTGCCTTCCC 59.501 66.667 0.00 0.00 38.78 3.97
3556 4949 2.202864 GCTCGCTCTCTGCCTTCC 60.203 66.667 0.00 0.00 38.78 3.46
3557 4950 2.202864 GGCTCGCTCTCTGCCTTC 60.203 66.667 0.00 0.00 43.05 3.46
3561 4954 2.202730 GTGAGGCTCGCTCTCTGC 60.203 66.667 20.43 0.00 38.57 4.26
3563 4956 1.993956 ATATGTGAGGCTCGCTCTCT 58.006 50.000 26.71 12.49 32.78 3.10
3564 4957 2.554462 TGTATATGTGAGGCTCGCTCTC 59.446 50.000 26.71 13.72 0.00 3.20
3567 4960 3.193691 GGTATGTATATGTGAGGCTCGCT 59.806 47.826 26.71 15.45 0.00 4.93
3568 4961 3.512680 GGTATGTATATGTGAGGCTCGC 58.487 50.000 20.87 20.87 0.00 5.03
3569 4962 3.439129 TCGGTATGTATATGTGAGGCTCG 59.561 47.826 10.42 0.00 0.00 5.03
3570 4963 4.672024 CGTCGGTATGTATATGTGAGGCTC 60.672 50.000 7.79 7.79 0.00 4.70
3571 4964 3.190744 CGTCGGTATGTATATGTGAGGCT 59.809 47.826 0.00 0.00 0.00 4.58
3572 4965 3.499048 CGTCGGTATGTATATGTGAGGC 58.501 50.000 0.00 0.00 0.00 4.70
3573 4966 3.504906 ACCGTCGGTATGTATATGTGAGG 59.495 47.826 17.19 0.00 32.11 3.86
3574 4967 4.214758 TCACCGTCGGTATGTATATGTGAG 59.785 45.833 18.38 0.00 32.11 3.51
3575 4968 4.136051 TCACCGTCGGTATGTATATGTGA 58.864 43.478 18.38 3.03 32.11 3.58
3576 4969 4.492791 TCACCGTCGGTATGTATATGTG 57.507 45.455 18.38 0.30 32.11 3.21
3577 4970 4.521639 ACATCACCGTCGGTATGTATATGT 59.478 41.667 25.21 19.67 32.48 2.29
3578 4971 5.055642 ACATCACCGTCGGTATGTATATG 57.944 43.478 25.21 19.23 32.48 1.78
3579 4972 5.306532 GACATCACCGTCGGTATGTATAT 57.693 43.478 25.89 13.02 33.50 0.86
3580 4973 4.754372 GACATCACCGTCGGTATGTATA 57.246 45.455 25.89 9.24 33.50 1.47
3581 4974 3.637998 GACATCACCGTCGGTATGTAT 57.362 47.619 25.89 13.85 33.50 2.29
3590 4983 2.230940 CGGATGCGACATCACCGTC 61.231 63.158 17.57 3.72 38.97 4.79
3592 4985 3.630148 GCGGATGCGACATCACCG 61.630 66.667 12.10 14.88 45.26 4.94
3595 4988 3.363844 TTCGGCGGATGCGACATCA 62.364 57.895 14.55 0.00 44.10 3.07
3596 4989 2.584970 TTCGGCGGATGCGACATC 60.585 61.111 14.55 10.26 44.10 3.06
3597 4990 2.572095 TTCTTCGGCGGATGCGACAT 62.572 55.000 14.55 0.00 44.10 3.06
3600 4993 1.151777 GATTTCTTCGGCGGATGCGA 61.152 55.000 12.10 0.00 44.10 5.10
3601 4994 1.276844 GATTTCTTCGGCGGATGCG 59.723 57.895 7.21 0.65 44.10 4.73
3602 4995 1.276844 CGATTTCTTCGGCGGATGC 59.723 57.895 7.21 0.00 44.28 3.91
3611 5004 1.276844 CATCGGCGGCGATTTCTTC 59.723 57.895 39.85 0.00 0.00 2.87
3612 5005 1.449601 ACATCGGCGGCGATTTCTT 60.450 52.632 39.85 23.04 0.00 2.52
3615 5008 3.202001 CCACATCGGCGGCGATTT 61.202 61.111 39.85 32.49 0.00 2.17
3617 5010 4.592192 CTCCACATCGGCGGCGAT 62.592 66.667 37.39 37.39 33.14 4.58
3625 5018 3.664025 TTCCCGCAGCTCCACATCG 62.664 63.158 0.00 0.00 0.00 3.84
3627 5020 2.270205 CTTCCCGCAGCTCCACAT 59.730 61.111 0.00 0.00 0.00 3.21
3628 5021 4.020617 CCTTCCCGCAGCTCCACA 62.021 66.667 0.00 0.00 0.00 4.17
3629 5022 4.021925 ACCTTCCCGCAGCTCCAC 62.022 66.667 0.00 0.00 0.00 4.02
3631 5024 4.785453 CCACCTTCCCGCAGCTCC 62.785 72.222 0.00 0.00 0.00 4.70
3639 5032 4.748144 CAGCTGGCCCACCTTCCC 62.748 72.222 5.57 0.00 36.63 3.97
3641 5034 3.635268 CTCCAGCTGGCCCACCTTC 62.635 68.421 28.91 0.00 36.63 3.46
3643 5036 3.562681 TACTCCAGCTGGCCCACCT 62.563 63.158 28.91 8.23 36.63 4.00
3644 5037 3.009115 TACTCCAGCTGGCCCACC 61.009 66.667 28.91 0.00 34.44 4.61
3645 5038 2.245438 GAGTACTCCAGCTGGCCCAC 62.245 65.000 28.91 22.26 34.44 4.61
3646 5039 1.990060 GAGTACTCCAGCTGGCCCA 60.990 63.158 28.91 10.40 34.44 5.36
3647 5040 2.904131 GAGTACTCCAGCTGGCCC 59.096 66.667 28.91 14.49 34.44 5.80
3657 5050 1.041447 TAGGGGCGCAAGGAGTACTC 61.041 60.000 14.87 14.87 38.28 2.59
3658 5051 0.398664 ATAGGGGCGCAAGGAGTACT 60.399 55.000 10.83 0.00 38.28 2.73
3659 5052 0.033642 GATAGGGGCGCAAGGAGTAC 59.966 60.000 10.83 0.00 38.28 2.73
3660 5053 1.461091 CGATAGGGGCGCAAGGAGTA 61.461 60.000 10.83 0.00 38.28 2.59
3661 5054 2.797278 CGATAGGGGCGCAAGGAGT 61.797 63.158 10.83 0.00 38.28 3.85
3662 5055 2.029666 CGATAGGGGCGCAAGGAG 59.970 66.667 10.83 0.00 38.28 3.69
3674 5067 0.039074 CCAACTAGGCGCTCCGATAG 60.039 60.000 7.64 5.07 37.47 2.08
3675 5068 2.038690 CCAACTAGGCGCTCCGATA 58.961 57.895 7.64 0.00 37.47 2.92
3676 5069 2.815308 CCAACTAGGCGCTCCGAT 59.185 61.111 7.64 0.00 37.47 4.18
3685 5078 3.375299 GCTCAATGTACTTGCCAACTAGG 59.625 47.826 0.00 0.00 41.84 3.02
3686 5079 3.062639 CGCTCAATGTACTTGCCAACTAG 59.937 47.826 0.00 0.00 34.66 2.57
3687 5080 3.000041 CGCTCAATGTACTTGCCAACTA 59.000 45.455 0.00 0.00 34.66 2.24
3688 5081 1.806542 CGCTCAATGTACTTGCCAACT 59.193 47.619 0.00 0.00 34.66 3.16
3689 5082 1.535462 ACGCTCAATGTACTTGCCAAC 59.465 47.619 0.00 0.00 34.66 3.77
3690 5083 1.804151 GACGCTCAATGTACTTGCCAA 59.196 47.619 0.00 0.00 34.66 4.52
3691 5084 1.001974 AGACGCTCAATGTACTTGCCA 59.998 47.619 0.00 0.00 34.66 4.92
3692 5085 1.661112 GAGACGCTCAATGTACTTGCC 59.339 52.381 0.00 0.00 34.66 4.52
3693 5086 1.321743 CGAGACGCTCAATGTACTTGC 59.678 52.381 7.47 0.00 34.66 4.01
3694 5087 2.863739 TCGAGACGCTCAATGTACTTG 58.136 47.619 7.47 0.00 36.09 3.16
3695 5088 3.502920 CTTCGAGACGCTCAATGTACTT 58.497 45.455 7.47 0.00 0.00 2.24
3696 5089 2.159366 CCTTCGAGACGCTCAATGTACT 60.159 50.000 7.47 0.00 0.00 2.73
3697 5090 2.186076 CCTTCGAGACGCTCAATGTAC 58.814 52.381 7.47 0.00 0.00 2.90
3698 5091 1.134367 CCCTTCGAGACGCTCAATGTA 59.866 52.381 7.47 0.00 0.00 2.29
3699 5092 0.108615 CCCTTCGAGACGCTCAATGT 60.109 55.000 7.47 0.00 0.00 2.71
3700 5093 1.424493 GCCCTTCGAGACGCTCAATG 61.424 60.000 7.47 0.00 0.00 2.82
3701 5094 1.153549 GCCCTTCGAGACGCTCAAT 60.154 57.895 7.47 0.00 0.00 2.57
3702 5095 2.261671 GCCCTTCGAGACGCTCAA 59.738 61.111 7.47 1.58 0.00 3.02
3703 5096 2.989253 TGCCCTTCGAGACGCTCA 60.989 61.111 7.47 0.00 0.00 4.26
3704 5097 2.507324 GTGCCCTTCGAGACGCTC 60.507 66.667 2.09 0.00 0.00 5.03
3705 5098 4.421479 CGTGCCCTTCGAGACGCT 62.421 66.667 2.09 0.00 0.00 5.07
3706 5099 4.719369 ACGTGCCCTTCGAGACGC 62.719 66.667 0.00 0.00 35.21 5.19
3707 5100 2.504244 GACGTGCCCTTCGAGACG 60.504 66.667 0.00 0.00 37.82 4.18
3708 5101 2.504244 CGACGTGCCCTTCGAGAC 60.504 66.667 0.00 0.00 37.43 3.36
3709 5102 2.670592 TCGACGTGCCCTTCGAGA 60.671 61.111 0.00 0.00 39.29 4.04


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.