Multiple sequence alignment - TraesCS5B01G544900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G544900 chr5B 100.000 6128 0 0 1 6128 697382483 697376356 0.000000e+00 11317.0
1 TraesCS5B01G544900 chr5B 93.467 398 19 2 506 903 697420320 697419930 8.850000e-163 584.0
2 TraesCS5B01G544900 chr5B 93.750 240 15 0 268 507 697420591 697420352 1.620000e-95 361.0
3 TraesCS5B01G544900 chr5B 93.991 233 11 1 1 230 697420821 697420589 3.510000e-92 350.0
4 TraesCS5B01G544900 chr5B 79.940 334 55 11 5466 5791 611088106 611087777 1.030000e-57 235.0
5 TraesCS5B01G544900 chr5D 93.313 2617 133 11 537 3135 553347333 553344741 0.000000e+00 3825.0
6 TraesCS5B01G544900 chr5D 96.545 2084 66 5 3721 5800 553344743 553342662 0.000000e+00 3445.0
7 TraesCS5B01G544900 chr5D 81.901 1094 152 27 3857 4941 552919509 552920565 0.000000e+00 881.0
8 TraesCS5B01G544900 chr5D 94.118 510 27 2 1 507 553400481 553399972 0.000000e+00 773.0
9 TraesCS5B01G544900 chr5D 95.158 475 19 2 916 1386 553389960 553389486 0.000000e+00 747.0
10 TraesCS5B01G544900 chr5D 80.586 922 126 25 2950 3845 552918559 552919453 0.000000e+00 662.0
11 TraesCS5B01G544900 chr5D 95.968 372 10 3 1 368 553347702 553347332 3.160000e-167 599.0
12 TraesCS5B01G544900 chr5D 94.416 394 15 2 506 899 553399940 553399554 3.160000e-167 599.0
13 TraesCS5B01G544900 chr5D 95.876 291 12 0 2167 2457 553360975 553360685 7.190000e-129 472.0
14 TraesCS5B01G544900 chr5D 94.366 284 12 2 2452 2735 553355839 553355560 3.390000e-117 433.0
15 TraesCS5B01G544900 chr5D 92.881 295 19 2 1553 1847 553361261 553360969 1.580000e-115 427.0
16 TraesCS5B01G544900 chr5D 76.995 426 77 15 5378 5791 558731951 558732367 2.220000e-54 224.0
17 TraesCS5B01G544900 chr5D 76.998 413 69 20 5402 5792 357368488 357368896 4.810000e-51 213.0
18 TraesCS5B01G544900 chr5D 76.179 424 79 14 57 480 133338707 133338306 2.900000e-48 204.0
19 TraesCS5B01G544900 chr5D 100.000 29 0 0 891 919 553390003 553389975 3.000000e-03 54.7
20 TraesCS5B01G544900 chr4A 80.492 1138 193 20 4135 5264 601036117 601037233 0.000000e+00 845.0
21 TraesCS5B01G544900 chr4A 78.887 1132 201 25 2932 4054 601034897 601035999 0.000000e+00 732.0
22 TraesCS5B01G544900 chr4A 75.907 689 125 29 1945 2610 601033938 601034608 1.280000e-81 315.0
23 TraesCS5B01G544900 chr4B 80.305 985 172 16 4130 5106 5363037 5364007 0.000000e+00 725.0
24 TraesCS5B01G544900 chr4B 78.202 1101 191 32 2932 4016 5407975 5409042 0.000000e+00 658.0
25 TraesCS5B01G544900 chr4B 77.956 1125 194 29 4065 5179 5409046 5410126 0.000000e+00 654.0
26 TraesCS5B01G544900 chr4B 83.784 444 62 6 3613 4054 5362487 5362922 4.420000e-111 412.0
27 TraesCS5B01G544900 chr4B 87.273 275 31 3 5798 6070 3697177 3697449 1.660000e-80 311.0
28 TraesCS5B01G544900 chr4B 87.273 275 31 3 5798 6070 3708696 3708968 1.660000e-80 311.0
29 TraesCS5B01G544900 chr7D 93.116 276 15 3 5797 6070 13067190 13066917 9.570000e-108 401.0
30 TraesCS5B01G544900 chr7D 78.894 398 67 15 5400 5791 42203558 42203172 2.840000e-63 254.0
31 TraesCS5B01G544900 chr7D 77.830 424 73 18 5378 5790 587385742 587386155 6.140000e-60 243.0
32 TraesCS5B01G544900 chr7D 83.562 73 12 0 90 162 500818301 500818229 1.100000e-07 69.4
33 TraesCS5B01G544900 chr5A 92.806 278 8 4 5802 6069 174262774 174262499 5.760000e-105 392.0
34 TraesCS5B01G544900 chr5A 84.034 119 12 5 326 442 679485814 679485701 2.340000e-19 108.0
35 TraesCS5B01G544900 chr7A 91.071 280 14 5 5800 6070 20692896 20692619 9.700000e-98 368.0
36 TraesCS5B01G544900 chr7A 77.049 427 76 19 5378 5791 679312773 679313190 6.180000e-55 226.0
37 TraesCS5B01G544900 chr7A 72.561 492 94 25 5 482 681698622 681699086 8.340000e-24 122.0
38 TraesCS5B01G544900 chr3D 89.744 273 25 2 5800 6071 607320969 607320699 4.550000e-91 346.0
39 TraesCS5B01G544900 chr3D 76.957 460 100 4 49 507 472194767 472194313 2.190000e-64 257.0
40 TraesCS5B01G544900 chr2D 82.641 409 50 14 5400 5801 334149035 334148641 5.880000e-90 342.0
41 TraesCS5B01G544900 chr1A 88.806 268 26 4 5799 6064 541655418 541655683 5.920000e-85 326.0
42 TraesCS5B01G544900 chr1A 86.207 145 17 1 2 143 363065568 363065424 2.960000e-33 154.0
43 TraesCS5B01G544900 chr1A 85.235 149 18 3 3865 4011 532748882 532748736 3.830000e-32 150.0
44 TraesCS5B01G544900 chr1A 84.314 153 20 3 3860 4010 532628141 532627991 4.950000e-31 147.0
45 TraesCS5B01G544900 chr1A 92.188 64 5 0 2953 3016 14591765 14591702 2.350000e-14 91.6
46 TraesCS5B01G544900 chr2A 88.364 275 24 7 5799 6072 744778828 744778561 2.130000e-84 324.0
47 TraesCS5B01G544900 chr6A 87.591 274 26 4 5799 6071 24092305 24092571 1.660000e-80 311.0
48 TraesCS5B01G544900 chr6A 82.407 108 17 2 53 159 558043036 558043142 6.540000e-15 93.5
49 TraesCS5B01G544900 chr6B 77.320 388 71 16 5423 5800 50403360 50402980 4.810000e-51 213.0
50 TraesCS5B01G544900 chr1D 85.906 149 17 3 3865 4011 435158766 435158620 8.220000e-34 156.0
51 TraesCS5B01G544900 chr1D 84.247 146 23 0 3867 4012 434370837 434370982 6.400000e-30 143.0
52 TraesCS5B01G544900 chr1D 90.909 66 6 0 2952 3017 434593790 434593725 8.460000e-14 89.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G544900 chr5B 697376356 697382483 6127 True 11317.000000 11317 100.000000 1 6128 1 chr5B.!!$R2 6127
1 TraesCS5B01G544900 chr5B 697419930 697420821 891 True 431.666667 584 93.736000 1 903 3 chr5B.!!$R3 902
2 TraesCS5B01G544900 chr5D 553342662 553347702 5040 True 2623.000000 3825 95.275333 1 5800 3 chr5D.!!$R3 5799
3 TraesCS5B01G544900 chr5D 552918559 552920565 2006 False 771.500000 881 81.243500 2950 4941 2 chr5D.!!$F3 1991
4 TraesCS5B01G544900 chr5D 553399554 553400481 927 True 686.000000 773 94.267000 1 899 2 chr5D.!!$R6 898
5 TraesCS5B01G544900 chr5D 553360685 553361261 576 True 449.500000 472 94.378500 1553 2457 2 chr5D.!!$R4 904
6 TraesCS5B01G544900 chr5D 553389486 553390003 517 True 400.850000 747 97.579000 891 1386 2 chr5D.!!$R5 495
7 TraesCS5B01G544900 chr4A 601033938 601037233 3295 False 630.666667 845 78.428667 1945 5264 3 chr4A.!!$F1 3319
8 TraesCS5B01G544900 chr4B 5407975 5410126 2151 False 656.000000 658 78.079000 2932 5179 2 chr4B.!!$F4 2247
9 TraesCS5B01G544900 chr4B 5362487 5364007 1520 False 568.500000 725 82.044500 3613 5106 2 chr4B.!!$F3 1493

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
803 842 0.460284 CGCCTACACCATGTGACTCC 60.460 60.0 0.49 0.00 36.96 3.85 F
1466 1527 0.034059 AGCTCACTTGTGTCCGGAAG 59.966 55.0 5.23 1.54 0.00 3.46 F
2665 2738 0.108019 AACGGTTCCAGACCTCCAAC 59.892 55.0 0.00 0.00 46.92 3.77 F
3647 3750 0.108804 AGCCATCGGTTCACGTACAG 60.109 55.0 0.00 0.00 44.69 2.74 F
4658 4864 0.179234 TGTCAGGCGTCAACCAAGAA 59.821 50.0 0.00 0.00 0.00 2.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1713 1774 0.035820 TCTCGTTGGCCAATGGGTAC 60.036 55.0 32.03 14.59 36.17 3.34 R
3337 3424 0.107312 CCCTTCAGGCTGACATGAGG 60.107 60.0 18.55 20.16 0.00 3.86 R
4639 4845 0.179234 TTCTTGGTTGACGCCTGACA 59.821 50.0 0.00 0.00 0.00 3.58 R
5113 5322 0.246360 TGTCTTCATCGTGTCGCCAT 59.754 50.0 0.00 0.00 0.00 4.40 R
6071 6283 0.544833 TACCACTTGGCCGGTCCTTA 60.545 55.0 2.12 0.00 39.32 2.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
162 166 2.294791 GACCACCATCCTCGAGTCTATG 59.705 54.545 12.31 11.48 0.00 2.23
248 252 2.031683 CGCTTTTCGACAAGGTGAAAGT 59.968 45.455 12.95 0.00 41.67 2.66
308 312 4.109675 GCAGCCCATGTACCCGGT 62.110 66.667 0.00 0.00 0.00 5.28
383 388 8.786898 AGTGTAGTTTTAGTTGATCTACGTACA 58.213 33.333 1.55 2.81 35.26 2.90
423 428 8.545229 TTTGCATGATTTGTATGGTTTTAAGG 57.455 30.769 0.00 0.00 0.00 2.69
460 465 8.950208 AGGTATTTAGATGCAGAGAAGTAAAC 57.050 34.615 0.00 0.00 0.00 2.01
588 626 9.562408 TTGAAGTGATAACACCATTGTTTACTA 57.438 29.630 0.00 0.00 43.89 1.82
620 658 6.147821 ACGGATATTTCTGCTATGCATTGTAC 59.852 38.462 3.54 0.00 38.13 2.90
669 707 4.980573 AGGAAACATGCACCTTAGTGTTA 58.019 39.130 1.77 0.00 46.35 2.41
670 708 5.570320 AGGAAACATGCACCTTAGTGTTAT 58.430 37.500 1.77 0.00 46.35 1.89
734 773 3.629796 GGAGAGAGGGGACAGAGATTCTT 60.630 52.174 0.00 0.00 0.00 2.52
787 826 2.785258 CCTAAAGCTTCACGCGCC 59.215 61.111 5.73 0.00 45.59 6.53
800 839 2.452813 CGCGCCTACACCATGTGAC 61.453 63.158 0.00 0.00 36.96 3.67
801 840 1.079127 GCGCCTACACCATGTGACT 60.079 57.895 0.00 0.00 36.96 3.41
802 841 1.084370 GCGCCTACACCATGTGACTC 61.084 60.000 0.00 0.00 36.96 3.36
803 842 0.460284 CGCCTACACCATGTGACTCC 60.460 60.000 0.49 0.00 36.96 3.85
804 843 0.905357 GCCTACACCATGTGACTCCT 59.095 55.000 0.49 0.00 36.96 3.69
874 913 2.036572 TTCCCGGCAATTCCACCC 59.963 61.111 0.00 0.00 34.01 4.61
1110 1167 2.866085 AAGCTCATGCCCAGCTCGAC 62.866 60.000 7.77 0.00 46.96 4.20
1231 1288 6.961359 TTAACAAATCTCGGATGTGTACAG 57.039 37.500 9.31 0.00 0.00 2.74
1276 1333 0.821711 CGGTCTTCCAGGGCAAACAA 60.822 55.000 0.00 0.00 0.00 2.83
1387 1448 5.468540 TGAATACATTACTCCCTCGATGG 57.531 43.478 0.00 0.00 0.00 3.51
1391 1452 1.140852 CATTACTCCCTCGATGGCCAA 59.859 52.381 10.96 0.00 0.00 4.52
1397 1458 1.523258 CCTCGATGGCCAAGAGCTG 60.523 63.158 27.08 15.82 43.05 4.24
1426 1487 4.666253 GCAGCTTCCCCAGTGGCA 62.666 66.667 2.61 0.00 0.00 4.92
1427 1488 2.360852 CAGCTTCCCCAGTGGCAG 60.361 66.667 2.61 0.00 0.00 4.85
1446 1507 2.349886 CAGGCGAAACTGCTACAATCTC 59.650 50.000 0.00 0.00 34.52 2.75
1447 1508 2.028112 AGGCGAAACTGCTACAATCTCA 60.028 45.455 0.00 0.00 34.52 3.27
1455 1516 3.260380 ACTGCTACAATCTCAGCTCACTT 59.740 43.478 0.00 0.00 38.63 3.16
1464 1525 1.112916 TCAGCTCACTTGTGTCCGGA 61.113 55.000 0.00 0.00 0.00 5.14
1465 1526 0.249868 CAGCTCACTTGTGTCCGGAA 60.250 55.000 5.23 0.00 0.00 4.30
1466 1527 0.034059 AGCTCACTTGTGTCCGGAAG 59.966 55.000 5.23 1.54 0.00 3.46
1476 1537 1.053424 TGTCCGGAAGCAAGTACCTT 58.947 50.000 5.23 0.00 0.00 3.50
1477 1538 2.028748 GTGTCCGGAAGCAAGTACCTTA 60.029 50.000 5.23 0.00 0.00 2.69
1482 1543 2.210961 GGAAGCAAGTACCTTATCCGC 58.789 52.381 0.00 0.00 0.00 5.54
1520 1581 2.002586 CAACTACGATGGCCTCAACAG 58.997 52.381 3.32 0.00 0.00 3.16
1530 1591 1.751927 CCTCAACAGGCTGCCCATC 60.752 63.158 16.57 0.00 30.98 3.51
1545 1606 2.103263 GCCCATCTTCGACCTCTACATT 59.897 50.000 0.00 0.00 0.00 2.71
1548 1609 2.961526 TCTTCGACCTCTACATTGGC 57.038 50.000 0.00 0.00 0.00 4.52
1557 1618 4.000988 ACCTCTACATTGGCGTTAACTTG 58.999 43.478 3.71 0.00 0.00 3.16
1584 1645 1.205893 ACGGTGAAGATCTCAGAAGCC 59.794 52.381 0.00 0.00 33.60 4.35
1602 1663 0.802994 CCGACGCAGCGGTATTTACA 60.803 55.000 21.15 0.00 46.07 2.41
1633 1694 0.811616 GCTCGTGCCGGATGATTTCT 60.812 55.000 5.05 0.00 0.00 2.52
1696 1757 1.383664 TCAGGCCTGGATCTGAGGG 60.384 63.158 32.23 2.64 35.37 4.30
1707 1768 0.615331 ATCTGAGGGCGCTGAAGAAA 59.385 50.000 8.56 0.00 0.00 2.52
1709 1770 1.003580 TCTGAGGGCGCTGAAGAAAAT 59.996 47.619 8.56 0.00 0.00 1.82
1713 1774 0.457337 GGGCGCTGAAGAAAATGCTG 60.457 55.000 7.64 0.00 0.00 4.41
1928 1989 6.127083 ACACAAAACTTCCACCATGAGAAAAT 60.127 34.615 0.00 0.00 0.00 1.82
1929 1990 6.201425 CACAAAACTTCCACCATGAGAAAATG 59.799 38.462 0.00 0.00 0.00 2.32
1982 2043 0.808453 CGCACGACCGGATATGGTTT 60.808 55.000 9.46 0.00 44.01 3.27
2012 2079 0.256464 ACGTGGAAAACTGGGTGGAA 59.744 50.000 0.00 0.00 0.00 3.53
2028 2095 2.678336 GTGGAAATAACAGCGGAGAAGG 59.322 50.000 0.00 0.00 0.00 3.46
2041 2108 3.618997 GCGGAGAAGGAGGTAAACATTGA 60.619 47.826 0.00 0.00 0.00 2.57
2049 2116 4.223032 AGGAGGTAAACATTGATGACGAGT 59.777 41.667 0.00 0.00 0.00 4.18
2130 2197 4.974645 AACATAGAGTTCACCTTGGACA 57.025 40.909 0.00 0.00 34.74 4.02
2272 2339 5.992829 TGCTAACGAACCTTCATTTCTACAA 59.007 36.000 0.00 0.00 0.00 2.41
2273 2340 6.147164 TGCTAACGAACCTTCATTTCTACAAG 59.853 38.462 0.00 0.00 0.00 3.16
2289 2356 3.280938 AAGCCGCCATACCTTGCCA 62.281 57.895 0.00 0.00 0.00 4.92
2346 2413 1.067821 GCCAGTACAAGATCTCCCTCG 59.932 57.143 0.00 0.00 0.00 4.63
2490 2563 2.874701 GCTCGCTGGCCATTATATATGG 59.125 50.000 5.51 8.69 41.99 2.74
2585 2658 4.764172 AGATGTATCAGGTGCAGAAGAAC 58.236 43.478 0.00 0.00 0.00 3.01
2597 2670 1.276421 CAGAAGAACTGGACGGGTGAT 59.724 52.381 0.00 0.00 42.39 3.06
2610 2683 2.668632 GTGATCCGTGCCTTCCCA 59.331 61.111 0.00 0.00 0.00 4.37
2626 2699 3.060615 CAAGGCACTGAGCTGGGC 61.061 66.667 0.00 0.00 44.79 5.36
2627 2700 4.711949 AAGGCACTGAGCTGGGCG 62.712 66.667 0.00 0.00 44.79 6.13
2649 2722 1.594862 GCTTGACCTGCAGCTATAACG 59.405 52.381 8.66 0.00 0.00 3.18
2665 2738 0.108019 AACGGTTCCAGACCTCCAAC 59.892 55.000 0.00 0.00 46.92 3.77
2671 2744 4.600062 GGTTCCAGACCTCCAACAATTAT 58.400 43.478 0.00 0.00 45.55 1.28
2767 2850 5.070446 TCTGTGTGTAGAAACATGTCCTTCT 59.930 40.000 15.32 15.32 38.08 2.85
2800 2883 4.878968 TGGTGGTATATCTCCTGACTTCA 58.121 43.478 5.71 0.00 0.00 3.02
2842 2925 3.649073 TCCATGTACGTTCTGTTCTGTG 58.351 45.455 0.00 0.00 0.00 3.66
2869 2952 8.451748 GGTCTACATCAGTTTTACCATTCTTTC 58.548 37.037 0.00 0.00 0.00 2.62
3013 3097 3.121030 CCAGACGCCCTTTCGCAG 61.121 66.667 0.00 0.00 0.00 5.18
3029 3113 5.759506 TTCGCAGTTGGAGTCATTAAAAA 57.240 34.783 0.00 0.00 0.00 1.94
3117 3201 7.658179 TCTCACTCATGTCAACAGTATTTTC 57.342 36.000 0.00 0.00 0.00 2.29
3156 3240 4.272504 TCTCGAACAACAAACTGAATGGAC 59.727 41.667 0.00 0.00 0.00 4.02
3166 3250 5.011023 ACAAACTGAATGGACCAATTCCTTC 59.989 40.000 0.00 0.00 46.10 3.46
3167 3251 4.387026 ACTGAATGGACCAATTCCTTCA 57.613 40.909 0.00 2.58 46.10 3.02
3179 3263 4.699257 CCAATTCCTTCAGGACTTCTCAAG 59.301 45.833 0.00 0.00 45.39 3.02
3208 3292 2.485659 AGATGGCTCCTTGGATCTGAA 58.514 47.619 0.00 0.00 0.00 3.02
3216 3300 4.805609 GCTCCTTGGATCTGAAGTCAGTTT 60.806 45.833 8.14 0.00 44.12 2.66
3221 3305 4.163427 TGGATCTGAAGTCAGTTTCCTCT 58.837 43.478 22.26 0.00 44.12 3.69
3222 3306 4.594920 TGGATCTGAAGTCAGTTTCCTCTT 59.405 41.667 22.26 0.00 44.12 2.85
3223 3307 5.072329 TGGATCTGAAGTCAGTTTCCTCTTT 59.928 40.000 22.26 0.00 44.12 2.52
3224 3308 5.411053 GGATCTGAAGTCAGTTTCCTCTTTG 59.589 44.000 18.08 0.00 44.12 2.77
3261 3348 7.642082 ACATCCTACTAAGTAACTGGTACTG 57.358 40.000 6.07 0.00 42.55 2.74
3262 3349 6.606395 ACATCCTACTAAGTAACTGGTACTGG 59.394 42.308 6.07 3.08 42.55 4.00
3277 3364 9.847224 AACTGGTACTGGATAAATTCGATTAAT 57.153 29.630 0.00 0.00 0.00 1.40
3317 3404 7.770801 TTCTTGTAGATATGACAACAATCCG 57.229 36.000 0.00 0.00 33.35 4.18
3321 3408 7.533289 TGTAGATATGACAACAATCCGGATA 57.467 36.000 19.48 0.00 0.00 2.59
3323 3410 8.593679 TGTAGATATGACAACAATCCGGATATT 58.406 33.333 19.48 12.71 0.00 1.28
3337 3424 5.302360 TCCGGATATTTGTACTAATGGCAC 58.698 41.667 12.08 2.29 0.00 5.01
3366 3456 3.577389 CCTGAAGGGGGCAGTAAAG 57.423 57.895 0.00 0.00 0.00 1.85
3411 3501 5.049680 CCTGTAGTTGTGATTGTGGTGTTAC 60.050 44.000 0.00 0.00 0.00 2.50
3421 3511 5.541101 TGATTGTGGTGTTACTACTAGTGGT 59.459 40.000 16.68 16.68 30.28 4.16
3425 3515 6.927416 TGTGGTGTTACTACTAGTGGTAATG 58.073 40.000 27.98 5.89 38.48 1.90
3430 3520 9.071276 GGTGTTACTACTAGTGGTAATGCTATA 57.929 37.037 27.98 7.65 38.48 1.31
3446 3536 4.808558 TGCTATACTTTTGCTTGCAAAGG 58.191 39.130 22.57 22.57 46.35 3.11
3487 3577 4.682860 GTCTTTGGAATGAGCACAAACATG 59.317 41.667 0.00 0.00 31.51 3.21
3497 3587 1.081892 CACAAACATGCTCTCCTCCG 58.918 55.000 0.00 0.00 0.00 4.63
3561 3664 6.114187 TCTGTTGACTACACAGGATCAATT 57.886 37.500 0.00 0.00 33.85 2.32
3570 3673 8.918202 ACTACACAGGATCAATTAAAAACTCA 57.082 30.769 0.00 0.00 0.00 3.41
3602 3705 5.665916 AAAAATGATGGTGATGGGACTTC 57.334 39.130 0.00 0.00 0.00 3.01
3603 3706 4.598036 AAATGATGGTGATGGGACTTCT 57.402 40.909 0.00 0.00 0.00 2.85
3604 3707 3.853355 ATGATGGTGATGGGACTTCTC 57.147 47.619 0.00 0.00 0.00 2.87
3605 3708 2.550175 TGATGGTGATGGGACTTCTCA 58.450 47.619 0.00 0.00 0.00 3.27
3606 3709 2.912295 TGATGGTGATGGGACTTCTCAA 59.088 45.455 0.00 0.00 0.00 3.02
3607 3710 3.054875 TGATGGTGATGGGACTTCTCAAG 60.055 47.826 0.00 0.00 0.00 3.02
3608 3711 2.619931 TGGTGATGGGACTTCTCAAGA 58.380 47.619 0.00 0.00 0.00 3.02
3609 3712 2.978978 TGGTGATGGGACTTCTCAAGAA 59.021 45.455 0.00 0.00 0.00 2.52
3629 3732 5.363939 AGAAAGTTCACTTGGACTTGAGAG 58.636 41.667 3.58 0.00 36.12 3.20
3632 3735 1.423584 TCACTTGGACTTGAGAGCCA 58.576 50.000 0.00 0.00 0.00 4.75
3647 3750 0.108804 AGCCATCGGTTCACGTACAG 60.109 55.000 0.00 0.00 44.69 2.74
3699 3802 1.228894 AGTGCTTGGTCGAGGAGGA 60.229 57.895 0.00 0.00 0.00 3.71
3707 3810 1.521681 GTCGAGGAGGATTTGGGCG 60.522 63.158 0.00 0.00 0.00 6.13
4111 4273 5.563842 GTCCAAGTCTAAAATGATGAAGCG 58.436 41.667 0.00 0.00 0.00 4.68
4177 4375 5.531287 GTCCACTGGTCTGAAATTTACAACT 59.469 40.000 0.00 0.00 0.00 3.16
4340 4543 2.508526 ACTTTGAGCATTGACTGGACC 58.491 47.619 0.00 0.00 0.00 4.46
4480 4683 3.509442 TGGATTGTCCAAGGCTTTCAAT 58.491 40.909 16.54 16.54 45.00 2.57
4514 4717 0.732571 CCATGTATCCACCAACACGC 59.267 55.000 0.00 0.00 0.00 5.34
4639 4845 6.546403 ACGTGTCTGTAGGTATCATAGAACAT 59.454 38.462 0.00 0.00 0.00 2.71
4641 4847 7.468768 CGTGTCTGTAGGTATCATAGAACATGT 60.469 40.741 0.00 0.00 0.00 3.21
4658 4864 0.179234 TGTCAGGCGTCAACCAAGAA 59.821 50.000 0.00 0.00 0.00 2.52
5083 5292 9.929722 CTACGCTTGAGATAGAGTATAATCATC 57.070 37.037 2.62 4.18 31.47 2.92
5156 5365 4.721776 TCCTTGCCAATCCAGTCTAATAGT 59.278 41.667 0.00 0.00 0.00 2.12
5265 5477 7.112122 TGTTCTTGCCATATGAATTGTCTAGT 58.888 34.615 3.65 0.00 0.00 2.57
5321 5533 7.174426 GCTATGCTAGGGTTAACCGATTAATTT 59.826 37.037 18.39 2.27 46.96 1.82
5347 5559 5.059161 TGATTACATAGCAGCAATGTCTCC 58.941 41.667 0.00 0.00 38.49 3.71
5379 5591 0.674895 AGCGAGTGGGTGCTCATTTC 60.675 55.000 0.00 0.00 36.53 2.17
5393 5605 4.338118 TGCTCATTTCACGAGAAAAGGTTT 59.662 37.500 12.02 0.00 46.06 3.27
5400 5612 3.328343 TCACGAGAAAAGGTTTCCCCATA 59.672 43.478 0.00 0.00 34.66 2.74
5428 5640 1.530323 AGCCAACACCGATTACAACC 58.470 50.000 0.00 0.00 0.00 3.77
5432 5644 1.730064 CAACACCGATTACAACCGAGG 59.270 52.381 0.00 0.00 0.00 4.63
5481 5693 1.024271 CACAACAGACACACCCAAGG 58.976 55.000 0.00 0.00 0.00 3.61
5482 5694 0.751643 ACAACAGACACACCCAAGGC 60.752 55.000 0.00 0.00 0.00 4.35
5491 5703 2.158534 ACACACCCAAGGCAAGATACAA 60.159 45.455 0.00 0.00 0.00 2.41
5493 5705 3.057315 CACACCCAAGGCAAGATACAAAG 60.057 47.826 0.00 0.00 0.00 2.77
5494 5706 3.181434 ACACCCAAGGCAAGATACAAAGA 60.181 43.478 0.00 0.00 0.00 2.52
5498 5710 3.698040 CCAAGGCAAGATACAAAGATGCT 59.302 43.478 0.00 0.00 37.20 3.79
5520 5732 0.177373 GAACCGATAGACCACCCCAC 59.823 60.000 0.00 0.00 39.76 4.61
5558 5770 3.584406 ACAGATGAGTGAGAAAGACCG 57.416 47.619 0.00 0.00 0.00 4.79
5563 5775 1.270305 TGAGTGAGAAAGACCGCTTGG 60.270 52.381 0.00 0.00 33.79 3.61
5568 5780 1.302511 GAAAGACCGCTTGGAGCCA 60.303 57.895 0.00 0.00 38.18 4.75
5672 5884 1.985159 GGGTATGACCATGGATAGCCA 59.015 52.381 25.92 0.11 41.02 4.75
5688 5900 3.716195 CACCACCGCCTGATCCCA 61.716 66.667 0.00 0.00 0.00 4.37
5691 5903 1.304052 CCACCGCCTGATCCCAAAA 60.304 57.895 0.00 0.00 0.00 2.44
5694 5906 1.550072 CACCGCCTGATCCCAAAAATT 59.450 47.619 0.00 0.00 0.00 1.82
5716 5928 6.555463 TTAGATTTTCACCCGGAGTAAGAT 57.445 37.500 0.73 0.00 0.00 2.40
5721 5933 2.100197 TCACCCGGAGTAAGATGACAG 58.900 52.381 0.73 0.00 0.00 3.51
5740 5952 3.509137 GAGTGGGAACGCCGTGACA 62.509 63.158 0.00 0.00 43.65 3.58
5769 5981 1.837439 AGGAAAGATACGGCATCACCA 59.163 47.619 2.61 0.00 39.03 4.17
5800 6012 1.079336 GACGGCCAGTGTAAGGACC 60.079 63.158 2.24 0.00 0.00 4.46
5801 6013 1.823169 GACGGCCAGTGTAAGGACCA 61.823 60.000 2.24 0.00 0.00 4.02
5802 6014 1.198759 ACGGCCAGTGTAAGGACCAT 61.199 55.000 2.24 0.00 0.00 3.55
5803 6015 0.744414 CGGCCAGTGTAAGGACCATG 60.744 60.000 2.24 0.00 0.00 3.66
5804 6016 0.394352 GGCCAGTGTAAGGACCATGG 60.394 60.000 11.19 11.19 34.66 3.66
5805 6017 0.328258 GCCAGTGTAAGGACCATGGT 59.672 55.000 19.89 19.89 34.25 3.55
5806 6018 1.271926 GCCAGTGTAAGGACCATGGTT 60.272 52.381 20.85 5.72 34.25 3.67
5807 6019 2.817839 GCCAGTGTAAGGACCATGGTTT 60.818 50.000 20.85 13.05 34.25 3.27
5808 6020 3.496331 CCAGTGTAAGGACCATGGTTTT 58.504 45.455 20.85 18.33 0.00 2.43
5809 6021 3.506067 CCAGTGTAAGGACCATGGTTTTC 59.494 47.826 20.85 11.97 0.00 2.29
5810 6022 4.141287 CAGTGTAAGGACCATGGTTTTCA 58.859 43.478 20.85 11.48 0.00 2.69
5811 6023 4.023193 CAGTGTAAGGACCATGGTTTTCAC 60.023 45.833 20.85 21.71 0.00 3.18
5812 6024 4.141251 AGTGTAAGGACCATGGTTTTCACT 60.141 41.667 24.78 24.78 0.00 3.41
5813 6025 4.583073 GTGTAAGGACCATGGTTTTCACTT 59.417 41.667 20.85 18.74 0.00 3.16
5814 6026 5.068591 GTGTAAGGACCATGGTTTTCACTTT 59.931 40.000 20.85 10.77 0.00 2.66
5815 6027 4.937201 AAGGACCATGGTTTTCACTTTC 57.063 40.909 20.85 2.00 0.00 2.62
5816 6028 3.909732 AGGACCATGGTTTTCACTTTCA 58.090 40.909 20.85 0.00 0.00 2.69
5817 6029 3.891366 AGGACCATGGTTTTCACTTTCAG 59.109 43.478 20.85 0.00 0.00 3.02
5818 6030 3.636764 GGACCATGGTTTTCACTTTCAGT 59.363 43.478 20.85 0.00 0.00 3.41
5831 6043 4.336889 ACTTTCAGTGAGATTTCGGTGA 57.663 40.909 0.00 0.00 0.00 4.02
5832 6044 4.703897 ACTTTCAGTGAGATTTCGGTGAA 58.296 39.130 0.00 0.00 0.00 3.18
5833 6045 5.123227 ACTTTCAGTGAGATTTCGGTGAAA 58.877 37.500 10.55 10.55 36.26 2.69
5834 6046 5.765182 ACTTTCAGTGAGATTTCGGTGAAAT 59.235 36.000 11.13 4.54 43.77 2.17
5835 6047 6.263168 ACTTTCAGTGAGATTTCGGTGAAATT 59.737 34.615 11.13 5.67 41.56 1.82
5836 6048 5.862924 TCAGTGAGATTTCGGTGAAATTC 57.137 39.130 6.26 6.79 41.56 2.17
5837 6049 5.304778 TCAGTGAGATTTCGGTGAAATTCA 58.695 37.500 6.26 8.76 41.56 2.57
5838 6050 5.179368 TCAGTGAGATTTCGGTGAAATTCAC 59.821 40.000 17.16 17.16 46.23 3.18
5839 6051 5.180117 CAGTGAGATTTCGGTGAAATTCACT 59.820 40.000 23.30 24.62 46.05 3.41
5862 6074 5.713025 TGAATTTCAGTAATTTCAGCAGGC 58.287 37.500 0.00 0.00 36.59 4.85
5863 6075 5.243507 TGAATTTCAGTAATTTCAGCAGGCA 59.756 36.000 0.00 0.00 36.59 4.75
5864 6076 4.503741 TTTCAGTAATTTCAGCAGGCAC 57.496 40.909 0.00 0.00 0.00 5.01
5865 6077 3.423539 TCAGTAATTTCAGCAGGCACT 57.576 42.857 0.00 0.00 43.88 4.40
5866 6078 4.551702 TCAGTAATTTCAGCAGGCACTA 57.448 40.909 0.00 0.00 36.02 2.74
5867 6079 4.905429 TCAGTAATTTCAGCAGGCACTAA 58.095 39.130 0.00 0.00 36.02 2.24
5868 6080 5.312895 TCAGTAATTTCAGCAGGCACTAAA 58.687 37.500 0.00 0.00 36.02 1.85
5869 6081 5.767665 TCAGTAATTTCAGCAGGCACTAAAA 59.232 36.000 0.00 0.00 36.02 1.52
5870 6082 6.434028 TCAGTAATTTCAGCAGGCACTAAAAT 59.566 34.615 0.00 0.00 36.02 1.82
5871 6083 7.609918 TCAGTAATTTCAGCAGGCACTAAAATA 59.390 33.333 0.00 0.00 36.02 1.40
5872 6084 8.408601 CAGTAATTTCAGCAGGCACTAAAATAT 58.591 33.333 0.00 0.00 36.02 1.28
5873 6085 8.971073 AGTAATTTCAGCAGGCACTAAAATATT 58.029 29.630 0.00 0.00 36.02 1.28
5876 6088 9.754382 AATTTCAGCAGGCACTAAAATATTATG 57.246 29.630 0.00 0.00 36.02 1.90
5877 6089 7.880160 TTCAGCAGGCACTAAAATATTATGT 57.120 32.000 0.00 0.00 36.02 2.29
5878 6090 7.880160 TCAGCAGGCACTAAAATATTATGTT 57.120 32.000 0.00 0.00 36.02 2.71
5879 6091 8.292444 TCAGCAGGCACTAAAATATTATGTTT 57.708 30.769 0.00 0.00 36.02 2.83
5880 6092 8.405531 TCAGCAGGCACTAAAATATTATGTTTC 58.594 33.333 0.00 0.00 36.02 2.78
5881 6093 7.376866 CAGCAGGCACTAAAATATTATGTTTCG 59.623 37.037 0.00 0.00 36.02 3.46
5882 6094 6.636850 GCAGGCACTAAAATATTATGTTTCGG 59.363 38.462 0.00 0.00 36.02 4.30
5883 6095 6.636850 CAGGCACTAAAATATTATGTTTCGGC 59.363 38.462 0.00 0.00 36.02 5.54
5884 6096 5.918576 GGCACTAAAATATTATGTTTCGGCC 59.081 40.000 0.00 0.00 0.00 6.13
5885 6097 6.460399 GGCACTAAAATATTATGTTTCGGCCA 60.460 38.462 2.24 0.00 34.47 5.36
5886 6098 6.975772 GCACTAAAATATTATGTTTCGGCCAA 59.024 34.615 2.24 0.00 0.00 4.52
5887 6099 7.489757 GCACTAAAATATTATGTTTCGGCCAAA 59.510 33.333 2.24 0.00 0.00 3.28
5888 6100 9.360093 CACTAAAATATTATGTTTCGGCCAAAA 57.640 29.630 2.24 0.00 0.00 2.44
5896 6108 8.647143 ATTATGTTTCGGCCAAAATATTTCAG 57.353 30.769 3.53 0.00 0.00 3.02
5897 6109 4.241681 TGTTTCGGCCAAAATATTTCAGC 58.758 39.130 2.24 11.95 0.00 4.26
5898 6110 2.842208 TCGGCCAAAATATTTCAGCG 57.158 45.000 2.24 10.11 0.00 5.18
5899 6111 2.360844 TCGGCCAAAATATTTCAGCGA 58.639 42.857 2.24 11.61 0.00 4.93
5900 6112 2.948979 TCGGCCAAAATATTTCAGCGAT 59.051 40.909 2.24 0.00 0.00 4.58
5901 6113 3.380004 TCGGCCAAAATATTTCAGCGATT 59.620 39.130 2.24 0.00 0.00 3.34
5902 6114 4.111916 CGGCCAAAATATTTCAGCGATTT 58.888 39.130 2.24 0.00 0.00 2.17
5903 6115 4.207019 CGGCCAAAATATTTCAGCGATTTC 59.793 41.667 2.24 2.69 0.00 2.17
5904 6116 5.108517 GGCCAAAATATTTCAGCGATTTCA 58.891 37.500 0.00 0.00 0.00 2.69
5905 6117 5.232838 GGCCAAAATATTTCAGCGATTTCAG 59.767 40.000 0.00 0.00 0.00 3.02
5906 6118 5.807011 GCCAAAATATTTCAGCGATTTCAGT 59.193 36.000 0.10 0.00 0.00 3.41
5907 6119 6.972328 GCCAAAATATTTCAGCGATTTCAGTA 59.028 34.615 0.10 0.00 0.00 2.74
5908 6120 7.649306 GCCAAAATATTTCAGCGATTTCAGTAT 59.351 33.333 0.10 0.00 0.00 2.12
5911 6123 9.884465 AAAATATTTCAGCGATTTCAGTATAGC 57.116 29.630 0.10 0.00 0.00 2.97
5912 6124 8.607441 AATATTTCAGCGATTTCAGTATAGCA 57.393 30.769 0.00 0.00 0.00 3.49
5913 6125 5.718649 TTTCAGCGATTTCAGTATAGCAC 57.281 39.130 0.00 0.00 0.00 4.40
5914 6126 4.385358 TCAGCGATTTCAGTATAGCACA 57.615 40.909 0.00 0.00 0.00 4.57
5915 6127 4.112634 TCAGCGATTTCAGTATAGCACAC 58.887 43.478 0.00 0.00 0.00 3.82
5916 6128 3.246226 CAGCGATTTCAGTATAGCACACC 59.754 47.826 0.00 0.00 0.00 4.16
5917 6129 3.118775 AGCGATTTCAGTATAGCACACCA 60.119 43.478 0.00 0.00 0.00 4.17
5918 6130 3.621268 GCGATTTCAGTATAGCACACCAA 59.379 43.478 0.00 0.00 0.00 3.67
5919 6131 4.273480 GCGATTTCAGTATAGCACACCAAT 59.727 41.667 0.00 0.00 0.00 3.16
5920 6132 5.220854 GCGATTTCAGTATAGCACACCAATT 60.221 40.000 0.00 0.00 0.00 2.32
5921 6133 6.422223 CGATTTCAGTATAGCACACCAATTC 58.578 40.000 0.00 0.00 0.00 2.17
5922 6134 6.511767 CGATTTCAGTATAGCACACCAATTCC 60.512 42.308 0.00 0.00 0.00 3.01
5923 6135 4.835284 TCAGTATAGCACACCAATTCCA 57.165 40.909 0.00 0.00 0.00 3.53
5924 6136 5.172687 TCAGTATAGCACACCAATTCCAA 57.827 39.130 0.00 0.00 0.00 3.53
5925 6137 5.754782 TCAGTATAGCACACCAATTCCAAT 58.245 37.500 0.00 0.00 0.00 3.16
5926 6138 6.894682 TCAGTATAGCACACCAATTCCAATA 58.105 36.000 0.00 0.00 0.00 1.90
5927 6139 7.517320 TCAGTATAGCACACCAATTCCAATAT 58.483 34.615 0.00 0.00 0.00 1.28
5928 6140 7.998383 TCAGTATAGCACACCAATTCCAATATT 59.002 33.333 0.00 0.00 0.00 1.28
5929 6141 8.632679 CAGTATAGCACACCAATTCCAATATTT 58.367 33.333 0.00 0.00 0.00 1.40
5930 6142 9.200817 AGTATAGCACACCAATTCCAATATTTT 57.799 29.630 0.00 0.00 0.00 1.82
5931 6143 9.816354 GTATAGCACACCAATTCCAATATTTTT 57.184 29.630 0.00 0.00 0.00 1.94
5932 6144 8.947055 ATAGCACACCAATTCCAATATTTTTC 57.053 30.769 0.00 0.00 0.00 2.29
5933 6145 6.767456 AGCACACCAATTCCAATATTTTTCA 58.233 32.000 0.00 0.00 0.00 2.69
5934 6146 7.222872 AGCACACCAATTCCAATATTTTTCAA 58.777 30.769 0.00 0.00 0.00 2.69
5935 6147 7.718753 AGCACACCAATTCCAATATTTTTCAAA 59.281 29.630 0.00 0.00 0.00 2.69
5936 6148 8.348507 GCACACCAATTCCAATATTTTTCAAAA 58.651 29.630 0.00 0.00 0.00 2.44
5983 6195 9.927668 AAATTCAAGTGAATATTTCGGTCATTT 57.072 25.926 6.95 0.00 43.41 2.32
5984 6196 8.915871 ATTCAAGTGAATATTTCGGTCATTTG 57.084 30.769 4.71 4.16 42.48 2.32
5985 6197 6.851609 TCAAGTGAATATTTCGGTCATTTGG 58.148 36.000 8.75 0.00 38.68 3.28
5986 6198 5.248870 AGTGAATATTTCGGTCATTTGGC 57.751 39.130 0.00 0.00 0.00 4.52
5987 6199 4.949856 AGTGAATATTTCGGTCATTTGGCT 59.050 37.500 0.00 0.00 0.00 4.75
5988 6200 5.036737 GTGAATATTTCGGTCATTTGGCTG 58.963 41.667 0.00 0.00 0.00 4.85
5989 6201 4.946772 TGAATATTTCGGTCATTTGGCTGA 59.053 37.500 0.00 0.00 32.40 4.26
5990 6202 5.417266 TGAATATTTCGGTCATTTGGCTGAA 59.583 36.000 2.35 2.35 42.66 3.02
5993 6205 3.911868 TTTCGGTCATTTGGCTGAAATG 58.088 40.909 13.66 12.79 46.47 2.32
5994 6206 3.305950 TTTCGGTCATTTGGCTGAAATGG 60.306 43.478 13.66 6.22 46.47 3.16
5995 6207 5.531829 TTTCGGTCATTTGGCTGAAATGGA 61.532 41.667 13.66 7.83 46.47 3.41
5996 6208 6.962304 TTTCGGTCATTTGGCTGAAATGGAA 61.962 40.000 13.66 11.66 46.47 3.53
5997 6209 8.359821 TTTCGGTCATTTGGCTGAAATGGAAA 62.360 38.462 13.66 15.05 46.47 3.13
6001 6213 4.885413 CATTTGGCTGAAATGGAAACTGA 58.115 39.130 11.68 0.00 45.06 3.41
6002 6214 5.299148 CATTTGGCTGAAATGGAAACTGAA 58.701 37.500 11.68 0.00 45.06 3.02
6003 6215 5.350504 TTTGGCTGAAATGGAAACTGAAA 57.649 34.783 0.00 0.00 0.00 2.69
6004 6216 5.549742 TTGGCTGAAATGGAAACTGAAAT 57.450 34.783 0.00 0.00 0.00 2.17
6005 6217 5.549742 TGGCTGAAATGGAAACTGAAATT 57.450 34.783 0.00 0.00 0.00 1.82
6006 6218 6.662865 TGGCTGAAATGGAAACTGAAATTA 57.337 33.333 0.00 0.00 0.00 1.40
6007 6219 6.454795 TGGCTGAAATGGAAACTGAAATTAC 58.545 36.000 0.00 0.00 0.00 1.89
6008 6220 6.267471 TGGCTGAAATGGAAACTGAAATTACT 59.733 34.615 0.00 0.00 0.00 2.24
6009 6221 6.587608 GGCTGAAATGGAAACTGAAATTACTG 59.412 38.462 0.00 0.00 0.00 2.74
6010 6222 7.147976 GCTGAAATGGAAACTGAAATTACTGT 58.852 34.615 0.00 0.00 0.00 3.55
6011 6223 7.115378 GCTGAAATGGAAACTGAAATTACTGTG 59.885 37.037 0.00 0.00 0.00 3.66
6012 6224 8.231692 TGAAATGGAAACTGAAATTACTGTGA 57.768 30.769 0.00 0.00 0.00 3.58
6013 6225 8.690884 TGAAATGGAAACTGAAATTACTGTGAA 58.309 29.630 0.00 0.00 0.00 3.18
6014 6226 9.696917 GAAATGGAAACTGAAATTACTGTGAAT 57.303 29.630 0.00 0.00 0.00 2.57
6027 6239 8.955061 AATTACTGTGAATTTCAGTGATTTCG 57.045 30.769 20.14 0.00 44.06 3.46
6028 6240 5.362556 ACTGTGAATTTCAGTGATTTCGG 57.637 39.130 13.76 0.00 43.32 4.30
6029 6241 4.821805 ACTGTGAATTTCAGTGATTTCGGT 59.178 37.500 13.76 0.00 43.32 4.69
6030 6242 5.299279 ACTGTGAATTTCAGTGATTTCGGTT 59.701 36.000 13.76 0.00 43.32 4.44
6031 6243 5.518812 TGTGAATTTCAGTGATTTCGGTTG 58.481 37.500 0.00 0.00 0.00 3.77
6032 6244 4.917415 GTGAATTTCAGTGATTTCGGTTGG 59.083 41.667 0.00 0.00 0.00 3.77
6033 6245 4.582656 TGAATTTCAGTGATTTCGGTTGGT 59.417 37.500 0.00 0.00 0.00 3.67
6034 6246 3.980646 TTTCAGTGATTTCGGTTGGTG 57.019 42.857 0.00 0.00 0.00 4.17
6035 6247 1.234821 TCAGTGATTTCGGTTGGTGC 58.765 50.000 0.00 0.00 0.00 5.01
6036 6248 1.202758 TCAGTGATTTCGGTTGGTGCT 60.203 47.619 0.00 0.00 0.00 4.40
6037 6249 1.069022 CAGTGATTTCGGTTGGTGCTG 60.069 52.381 0.00 0.00 0.00 4.41
6038 6250 1.202758 AGTGATTTCGGTTGGTGCTGA 60.203 47.619 0.00 0.00 0.00 4.26
6039 6251 1.606668 GTGATTTCGGTTGGTGCTGAA 59.393 47.619 0.00 0.00 32.46 3.02
6040 6252 2.034053 GTGATTTCGGTTGGTGCTGAAA 59.966 45.455 3.06 3.06 44.68 2.69
6043 6255 3.810310 TTTCGGTTGGTGCTGAAATTT 57.190 38.095 0.00 0.00 38.41 1.82
6044 6256 3.810310 TTCGGTTGGTGCTGAAATTTT 57.190 38.095 0.00 0.00 31.49 1.82
6045 6257 3.810310 TCGGTTGGTGCTGAAATTTTT 57.190 38.095 0.00 0.00 0.00 1.94
6069 6281 9.837525 TTTTTGAAACTGAAATTGAAAACCATG 57.162 25.926 0.00 0.00 0.00 3.66
6070 6282 7.551035 TTGAAACTGAAATTGAAAACCATGG 57.449 32.000 11.19 11.19 0.00 3.66
6071 6283 6.648192 TGAAACTGAAATTGAAAACCATGGT 58.352 32.000 13.00 13.00 0.00 3.55
6072 6284 7.786030 TGAAACTGAAATTGAAAACCATGGTA 58.214 30.769 20.12 1.36 0.00 3.25
6073 6285 8.260818 TGAAACTGAAATTGAAAACCATGGTAA 58.739 29.630 20.12 9.26 0.00 2.85
6074 6286 8.661352 AAACTGAAATTGAAAACCATGGTAAG 57.339 30.769 20.12 5.79 0.00 2.34
6075 6287 6.758254 ACTGAAATTGAAAACCATGGTAAGG 58.242 36.000 20.12 0.00 0.00 2.69
6076 6288 6.553100 ACTGAAATTGAAAACCATGGTAAGGA 59.447 34.615 20.12 4.02 0.00 3.36
6077 6289 6.754193 TGAAATTGAAAACCATGGTAAGGAC 58.246 36.000 20.12 8.96 0.00 3.85
6086 6298 3.075186 GGTAAGGACCGGCCAAGT 58.925 61.111 15.92 0.00 40.02 3.16
6087 6299 1.376812 GGTAAGGACCGGCCAAGTG 60.377 63.158 15.92 0.00 40.02 3.16
6088 6300 1.376812 GTAAGGACCGGCCAAGTGG 60.377 63.158 15.92 0.00 40.02 4.00
6089 6301 1.844289 TAAGGACCGGCCAAGTGGT 60.844 57.895 15.92 0.31 42.42 4.16
6090 6302 0.544833 TAAGGACCGGCCAAGTGGTA 60.545 55.000 15.92 0.00 38.99 3.25
6091 6303 2.046604 GGACCGGCCAAGTGGTAC 60.047 66.667 0.00 0.00 38.99 3.34
6092 6304 2.046604 GACCGGCCAAGTGGTACC 60.047 66.667 4.43 4.43 38.99 3.34
6093 6305 3.617143 GACCGGCCAAGTGGTACCC 62.617 68.421 10.07 0.32 38.99 3.69
6094 6306 4.419921 CCGGCCAAGTGGTACCCC 62.420 72.222 10.07 0.00 37.57 4.95
6095 6307 4.770874 CGGCCAAGTGGTACCCCG 62.771 72.222 10.07 10.09 37.57 5.73
6096 6308 4.419921 GGCCAAGTGGTACCCCGG 62.420 72.222 10.07 5.54 37.57 5.73
6098 6310 4.770874 CCAAGTGGTACCCCGGCG 62.771 72.222 10.07 0.00 0.00 6.46
6104 6316 3.149648 GGTACCCCGGCGCTCTTA 61.150 66.667 7.64 0.00 0.00 2.10
6105 6317 2.105729 GTACCCCGGCGCTCTTAC 59.894 66.667 7.64 0.00 0.00 2.34
6106 6318 3.149648 TACCCCGGCGCTCTTACC 61.150 66.667 7.64 0.00 0.00 2.85
6109 6321 4.222847 CCCGGCGCTCTTACCCTC 62.223 72.222 7.64 0.00 0.00 4.30
6110 6322 4.222847 CCGGCGCTCTTACCCTCC 62.223 72.222 7.64 0.00 0.00 4.30
6111 6323 4.570663 CGGCGCTCTTACCCTCCG 62.571 72.222 7.64 0.00 0.00 4.63
6112 6324 3.459063 GGCGCTCTTACCCTCCGT 61.459 66.667 7.64 0.00 0.00 4.69
6113 6325 2.104530 GCGCTCTTACCCTCCGTC 59.895 66.667 0.00 0.00 0.00 4.79
6114 6326 2.408022 CGCTCTTACCCTCCGTCG 59.592 66.667 0.00 0.00 0.00 5.12
6115 6327 2.104530 GCTCTTACCCTCCGTCGC 59.895 66.667 0.00 0.00 0.00 5.19
6116 6328 2.707849 GCTCTTACCCTCCGTCGCA 61.708 63.158 0.00 0.00 0.00 5.10
6117 6329 1.139095 CTCTTACCCTCCGTCGCAC 59.861 63.158 0.00 0.00 0.00 5.34
6118 6330 2.183555 CTTACCCTCCGTCGCACC 59.816 66.667 0.00 0.00 0.00 5.01
6119 6331 2.283388 TTACCCTCCGTCGCACCT 60.283 61.111 0.00 0.00 0.00 4.00
6120 6332 1.885163 CTTACCCTCCGTCGCACCTT 61.885 60.000 0.00 0.00 0.00 3.50
6121 6333 0.611618 TTACCCTCCGTCGCACCTTA 60.612 55.000 0.00 0.00 0.00 2.69
6122 6334 1.033746 TACCCTCCGTCGCACCTTAG 61.034 60.000 0.00 0.00 0.00 2.18
6123 6335 2.202756 CCTCCGTCGCACCTTAGC 60.203 66.667 0.00 0.00 0.00 3.09
6124 6336 2.711922 CCTCCGTCGCACCTTAGCT 61.712 63.158 0.00 0.00 0.00 3.32
6125 6337 1.226717 CTCCGTCGCACCTTAGCTC 60.227 63.158 0.00 0.00 0.00 4.09
6126 6338 2.202756 CCGTCGCACCTTAGCTCC 60.203 66.667 0.00 0.00 0.00 4.70
6127 6339 2.579787 CGTCGCACCTTAGCTCCG 60.580 66.667 0.00 0.00 0.00 4.63
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
127 131 0.826715 GTGGTCTGCTCTGCCATCTA 59.173 55.000 0.00 0.00 34.52 1.98
162 166 1.368641 TCACGTATGCCACATCTTGC 58.631 50.000 0.00 0.00 0.00 4.01
248 252 2.444706 CCTCCGCCTCCATCTCCA 60.445 66.667 0.00 0.00 0.00 3.86
308 312 2.503765 TCCACTATCTTCATTTCGGGCA 59.496 45.455 0.00 0.00 0.00 5.36
319 323 4.279671 GTCATCGGAGATGTCCACTATCTT 59.720 45.833 9.94 0.00 44.18 2.40
406 411 8.257602 ACTTGAACCCTTAAAACCATACAAAT 57.742 30.769 0.00 0.00 0.00 2.32
423 428 7.715249 TGCATCTAAATACCTCATACTTGAACC 59.285 37.037 0.00 0.00 0.00 3.62
497 502 3.989698 CTACAGCCTGACGCACCCG 62.990 68.421 0.00 0.00 41.38 5.28
588 626 7.036220 GCATAGCAGAAATATCCGTAGTACAT 58.964 38.462 0.38 0.00 0.00 2.29
644 682 4.074970 CACTAAGGTGCATGTTTCCTCTT 58.925 43.478 0.00 0.00 36.61 2.85
734 773 1.753930 AGAATCATGCATCACGCCAA 58.246 45.000 0.00 0.00 41.33 4.52
787 826 2.428890 GGAGAGGAGTCACATGGTGTAG 59.571 54.545 0.00 0.00 34.79 2.74
818 857 2.031944 GGCAAGAAAACGAGGACTTGAC 60.032 50.000 16.18 11.89 41.16 3.18
874 913 1.162698 TGGTAGACGGAAGAGTCGTG 58.837 55.000 0.00 0.00 45.26 4.35
1110 1167 4.142609 AGTAGTGACCATACCATTGCTG 57.857 45.455 0.00 0.00 0.00 4.41
1151 1208 5.072040 ACCAAGCATTTTATTCCCGAAAG 57.928 39.130 0.00 0.00 0.00 2.62
1231 1288 5.529060 AGTCTATGCTTATAAAACCTGCAGC 59.471 40.000 8.66 0.00 37.07 5.25
1276 1333 2.667473 GTGGTGTTATCCACGTAGCT 57.333 50.000 0.00 0.00 46.38 3.32
1298 1355 1.400737 GTCCGTGGTGTAGGATAGCT 58.599 55.000 0.00 0.00 38.97 3.32
1425 1486 2.349886 GAGATTGTAGCAGTTTCGCCTG 59.650 50.000 0.00 0.00 35.49 4.85
1426 1487 2.028112 TGAGATTGTAGCAGTTTCGCCT 60.028 45.455 0.00 0.00 0.00 5.52
1427 1488 2.346803 TGAGATTGTAGCAGTTTCGCC 58.653 47.619 0.00 0.00 0.00 5.54
1431 1492 3.999663 GTGAGCTGAGATTGTAGCAGTTT 59.000 43.478 0.00 0.00 42.29 2.66
1442 1503 1.067283 CGGACACAAGTGAGCTGAGAT 60.067 52.381 7.28 0.00 0.00 2.75
1446 1507 0.249868 TTCCGGACACAAGTGAGCTG 60.250 55.000 1.83 3.82 0.00 4.24
1447 1508 0.034059 CTTCCGGACACAAGTGAGCT 59.966 55.000 1.83 0.00 0.00 4.09
1455 1516 0.034337 GGTACTTGCTTCCGGACACA 59.966 55.000 1.83 1.57 0.00 3.72
1476 1537 0.036765 ACAAGAACTTGCCGCGGATA 60.037 50.000 33.48 14.85 44.03 2.59
1477 1538 0.036765 TACAAGAACTTGCCGCGGAT 60.037 50.000 33.48 7.72 44.03 4.18
1482 1543 1.225376 TGGCGTACAAGAACTTGCCG 61.225 55.000 13.50 15.48 45.34 5.69
1520 1581 2.514824 GGTCGAAGATGGGCAGCC 60.515 66.667 1.26 1.26 40.67 4.85
1524 1585 1.112113 TGTAGAGGTCGAAGATGGGC 58.888 55.000 0.00 0.00 40.67 5.36
1530 1591 1.135083 ACGCCAATGTAGAGGTCGAAG 60.135 52.381 0.00 0.00 0.00 3.79
1545 1606 1.671845 GTTGTCCACAAGTTAACGCCA 59.328 47.619 0.00 0.00 36.39 5.69
1548 1609 1.935199 ACCGTTGTCCACAAGTTAACG 59.065 47.619 0.00 0.00 42.48 3.18
1557 1618 2.288825 TGAGATCTTCACCGTTGTCCAC 60.289 50.000 0.00 0.00 0.00 4.02
1584 1645 0.570734 CTGTAAATACCGCTGCGTCG 59.429 55.000 21.59 9.06 0.00 5.12
1598 1659 1.202568 CGAGCATGATGGCCTCTGTAA 60.203 52.381 3.32 0.00 0.00 2.41
1602 1663 1.145598 CACGAGCATGATGGCCTCT 59.854 57.895 3.32 0.00 0.00 3.69
1633 1694 4.892934 AGTGTTTATCAAGCAAACCTCCAA 59.107 37.500 0.00 0.00 35.46 3.53
1696 1757 2.509870 GTACAGCATTTTCTTCAGCGC 58.490 47.619 0.00 0.00 0.00 5.92
1707 1768 0.040942 TGGCCAATGGGTACAGCATT 59.959 50.000 0.61 0.00 36.17 3.56
1709 1770 0.897863 GTTGGCCAATGGGTACAGCA 60.898 55.000 23.66 0.00 36.17 4.41
1713 1774 0.035820 TCTCGTTGGCCAATGGGTAC 60.036 55.000 32.03 14.59 36.17 3.34
1879 1940 3.348151 TTTTTATGCTCACCGGGCA 57.652 47.368 6.32 6.32 44.05 5.36
1917 1978 8.030692 TCAAGAATAAGTTGCATTTTCTCATGG 58.969 33.333 0.00 0.00 0.00 3.66
1928 1989 6.016610 GGTACCTGTTTCAAGAATAAGTTGCA 60.017 38.462 4.06 0.00 0.00 4.08
1929 1990 6.379386 GGTACCTGTTTCAAGAATAAGTTGC 58.621 40.000 4.06 0.00 0.00 4.17
1982 2043 2.312722 TTTCCACGTCGACAAAAGGA 57.687 45.000 17.16 13.11 0.00 3.36
2012 2079 2.188817 ACCTCCTTCTCCGCTGTTATT 58.811 47.619 0.00 0.00 0.00 1.40
2028 2095 5.869888 AGAACTCGTCATCAATGTTTACCTC 59.130 40.000 0.00 0.00 0.00 3.85
2049 2116 3.605749 CTTGGGGCGGCTCGAAGAA 62.606 63.158 18.50 0.00 34.09 2.52
2055 2122 2.543067 ATCACTTCTTGGGGCGGCTC 62.543 60.000 9.56 4.97 0.00 4.70
2264 2331 1.557832 AGGTATGGCGGCTTGTAGAAA 59.442 47.619 11.43 0.00 0.00 2.52
2265 2332 1.200519 AGGTATGGCGGCTTGTAGAA 58.799 50.000 11.43 0.00 0.00 2.10
2289 2356 2.038387 ACTGAGTTCACAAAACCGCT 57.962 45.000 0.00 0.00 0.00 5.52
2610 2683 4.711949 CGCCCAGCTCAGTGCCTT 62.712 66.667 0.00 0.00 44.23 4.35
2626 2699 2.599645 ATAGCTGCAGGTCAAGCCCG 62.600 60.000 23.94 0.00 38.26 6.13
2627 2700 0.469917 TATAGCTGCAGGTCAAGCCC 59.530 55.000 23.94 0.00 38.26 5.19
2714 2787 1.135689 GCTCAGTTTTATGGCACCACG 60.136 52.381 0.00 0.00 0.00 4.94
2767 2850 6.841229 GGAGATATACCACCATGGAGATCATA 59.159 42.308 21.47 8.99 40.96 2.15
2800 2883 3.845781 TTGAAGGTTCTTGAGAGCTGT 57.154 42.857 0.00 0.00 0.00 4.40
2842 2925 6.415573 AGAATGGTAAAACTGATGTAGACCC 58.584 40.000 0.00 0.00 0.00 4.46
2869 2952 8.659569 TGTCAAAAAGAATACGTACGTACTAG 57.340 34.615 28.99 13.36 33.01 2.57
3094 3178 6.652481 AGGAAAATACTGTTGACATGAGTGAG 59.348 38.462 0.00 0.00 0.00 3.51
3117 3201 7.737972 TGTTCGAGAGATCTCTATAGAAAGG 57.262 40.000 25.18 7.51 40.61 3.11
3137 3221 4.647424 TGGTCCATTCAGTTTGTTGTTC 57.353 40.909 0.00 0.00 0.00 3.18
3166 3250 6.051717 TCTTGAACTTTCTTGAGAAGTCCTG 58.948 40.000 0.00 0.00 35.21 3.86
3167 3251 6.240549 TCTTGAACTTTCTTGAGAAGTCCT 57.759 37.500 0.00 0.00 35.21 3.85
3179 3263 3.192212 CCAAGGAGCCATCTTGAACTTTC 59.808 47.826 11.39 0.00 42.94 2.62
3231 3317 9.263446 ACCAGTTACTTAGTAGGATGTAATTGA 57.737 33.333 3.59 0.00 35.83 2.57
3245 3331 9.245962 CGAATTTATCCAGTACCAGTTACTTAG 57.754 37.037 0.00 0.00 39.18 2.18
3246 3332 8.970020 TCGAATTTATCCAGTACCAGTTACTTA 58.030 33.333 0.00 0.00 39.18 2.24
3247 3333 7.844009 TCGAATTTATCCAGTACCAGTTACTT 58.156 34.615 0.00 0.00 39.18 2.24
3248 3334 7.414222 TCGAATTTATCCAGTACCAGTTACT 57.586 36.000 0.00 0.00 42.23 2.24
3249 3335 8.658499 AATCGAATTTATCCAGTACCAGTTAC 57.342 34.615 0.00 0.00 0.00 2.50
3251 3337 9.847224 ATTAATCGAATTTATCCAGTACCAGTT 57.153 29.630 0.00 0.00 0.00 3.16
3307 3394 8.836413 CATTAGTACAAATATCCGGATTGTTGT 58.164 33.333 31.69 31.69 38.22 3.32
3317 3404 6.296026 TGAGGTGCCATTAGTACAAATATCC 58.704 40.000 0.00 0.00 31.67 2.59
3321 3408 5.509498 ACATGAGGTGCCATTAGTACAAAT 58.491 37.500 0.00 0.00 31.67 2.32
3323 3410 4.019771 TGACATGAGGTGCCATTAGTACAA 60.020 41.667 0.00 0.00 31.67 2.41
3337 3424 0.107312 CCCTTCAGGCTGACATGAGG 60.107 60.000 18.55 20.16 0.00 3.86
3362 3452 8.202137 GGAACAACTATGTAGATGGCTACTTTA 58.798 37.037 0.00 0.00 45.79 1.85
3366 3456 5.986135 CAGGAACAACTATGTAGATGGCTAC 59.014 44.000 0.00 0.00 45.80 3.58
3411 3501 8.979574 GCAAAAGTATAGCATTACCACTAGTAG 58.020 37.037 0.00 0.00 30.92 2.57
3421 3511 7.035004 CCTTTGCAAGCAAAAGTATAGCATTA 58.965 34.615 19.39 0.00 44.07 1.90
3425 3515 5.059404 TCCTTTGCAAGCAAAAGTATAGC 57.941 39.130 19.39 0.00 44.07 2.97
3430 3520 4.831107 TCTTTTCCTTTGCAAGCAAAAGT 58.169 34.783 24.36 0.00 44.07 2.66
3446 3536 5.506686 AAGACTCACCTTGCTTTCTTTTC 57.493 39.130 0.00 0.00 0.00 2.29
3487 3577 0.601057 GATAGGAAGCGGAGGAGAGC 59.399 60.000 0.00 0.00 0.00 4.09
3491 3581 1.063942 TCACAGATAGGAAGCGGAGGA 60.064 52.381 0.00 0.00 0.00 3.71
3493 3583 3.526931 TTTCACAGATAGGAAGCGGAG 57.473 47.619 0.00 0.00 0.00 4.63
3497 3587 3.686016 TGGGTTTTCACAGATAGGAAGC 58.314 45.455 0.00 0.00 0.00 3.86
3537 3629 4.790765 TGATCCTGTGTAGTCAACAGAG 57.209 45.455 5.17 0.00 46.54 3.35
3581 3684 4.939255 AGAAGTCCCATCACCATCATTTT 58.061 39.130 0.00 0.00 0.00 1.82
3591 3694 4.982241 ACTTTCTTGAGAAGTCCCATCA 57.018 40.909 0.00 0.00 35.21 3.07
3599 3702 5.819901 AGTCCAAGTGAACTTTCTTGAGAAG 59.180 40.000 6.50 0.00 42.22 2.85
3601 3704 5.359194 AGTCCAAGTGAACTTTCTTGAGA 57.641 39.130 6.50 0.90 42.22 3.27
3602 3705 5.586243 TCAAGTCCAAGTGAACTTTCTTGAG 59.414 40.000 19.71 2.05 42.22 3.02
3603 3706 5.496556 TCAAGTCCAAGTGAACTTTCTTGA 58.503 37.500 19.71 19.71 42.22 3.02
3604 3707 5.586243 TCTCAAGTCCAAGTGAACTTTCTTG 59.414 40.000 17.32 17.32 40.19 3.02
3605 3708 5.745227 TCTCAAGTCCAAGTGAACTTTCTT 58.255 37.500 0.00 0.00 33.11 2.52
3606 3709 5.359194 TCTCAAGTCCAAGTGAACTTTCT 57.641 39.130 0.00 0.00 33.11 2.52
3607 3710 4.024472 GCTCTCAAGTCCAAGTGAACTTTC 60.024 45.833 0.00 0.00 33.11 2.62
3608 3711 3.879892 GCTCTCAAGTCCAAGTGAACTTT 59.120 43.478 0.00 0.00 33.11 2.66
3609 3712 3.471680 GCTCTCAAGTCCAAGTGAACTT 58.528 45.455 0.00 0.00 36.45 2.66
3629 3732 1.082117 CCTGTACGTGAACCGATGGC 61.082 60.000 0.00 0.00 40.70 4.40
3632 3735 1.067354 GTTCCCTGTACGTGAACCGAT 60.067 52.381 0.00 0.00 40.70 4.18
3647 3750 1.747355 TCGTTATCGTCTCCAGTTCCC 59.253 52.381 0.00 0.00 38.33 3.97
3690 3793 1.987855 ACGCCCAAATCCTCCTCGA 60.988 57.895 0.00 0.00 0.00 4.04
3699 3802 2.641197 GTGGAAGACACGCCCAAAT 58.359 52.632 0.00 0.00 40.85 2.32
3707 3810 2.047179 GGGAGCCGTGGAAGACAC 60.047 66.667 0.00 0.00 46.78 3.67
4340 4543 9.749125 TAGGTACTCTAGCCCTACACATCAGTG 62.749 48.148 0.00 0.00 46.10 3.66
4480 4683 0.959867 CATGGGTGTCATCGTGGCAA 60.960 55.000 0.00 0.00 31.67 4.52
4598 4802 7.152645 ACAGACACGTATGTTTACTCAGAAAT 58.847 34.615 0.00 0.00 39.95 2.17
4639 4845 0.179234 TTCTTGGTTGACGCCTGACA 59.821 50.000 0.00 0.00 0.00 3.58
4641 4847 1.071542 TCATTCTTGGTTGACGCCTGA 59.928 47.619 0.00 0.00 0.00 3.86
4658 4864 5.359576 ACAACACCAAAACTGTACACATCAT 59.640 36.000 0.00 0.00 0.00 2.45
5083 5292 1.750399 CCATTTGTGGCCCTCTCCG 60.750 63.158 0.00 0.00 0.00 4.63
5113 5322 0.246360 TGTCTTCATCGTGTCGCCAT 59.754 50.000 0.00 0.00 0.00 4.40
5156 5365 7.226441 TCTTGAAAGAAGAGAAATCATGGTGA 58.774 34.615 0.00 0.00 30.73 4.02
5216 5425 3.396560 ACTCACCTAGGTACGCAAAAAC 58.603 45.455 15.80 0.00 0.00 2.43
5321 5533 7.388776 GGAGACATTGCTGCTATGTAATCATTA 59.611 37.037 25.35 0.00 36.41 1.90
5328 5540 4.760530 AAGGAGACATTGCTGCTATGTA 57.239 40.909 25.35 0.00 35.36 2.29
5347 5559 1.339610 CACTCGCTGGATCTCCCTAAG 59.660 57.143 0.00 0.00 35.38 2.18
5393 5605 7.179269 GGTGTTGGCTTTATAATATATGGGGA 58.821 38.462 0.00 0.00 0.00 4.81
5400 5612 8.911918 TGTAATCGGTGTTGGCTTTATAATAT 57.088 30.769 0.00 0.00 0.00 1.28
5428 5640 3.056821 TCTGTGTTTGTATCAGTCCCTCG 60.057 47.826 0.00 0.00 0.00 4.63
5432 5644 4.327357 CGTGATCTGTGTTTGTATCAGTCC 59.673 45.833 0.00 0.00 0.00 3.85
5481 5693 3.282021 TCCCAGCATCTTTGTATCTTGC 58.718 45.455 0.00 0.00 0.00 4.01
5482 5694 4.096984 GGTTCCCAGCATCTTTGTATCTTG 59.903 45.833 0.00 0.00 0.00 3.02
5491 5703 2.103263 GTCTATCGGTTCCCAGCATCTT 59.897 50.000 0.00 0.00 0.00 2.40
5493 5705 1.270358 GGTCTATCGGTTCCCAGCATC 60.270 57.143 0.00 0.00 0.00 3.91
5494 5706 0.759346 GGTCTATCGGTTCCCAGCAT 59.241 55.000 0.00 0.00 0.00 3.79
5498 5710 0.979187 GGGTGGTCTATCGGTTCCCA 60.979 60.000 0.00 0.00 34.20 4.37
5508 5720 0.545787 ATTGTCGGTGGGGTGGTCTA 60.546 55.000 0.00 0.00 0.00 2.59
5520 5732 3.745975 TCTGTAGTTTGCTTGATTGTCGG 59.254 43.478 0.00 0.00 0.00 4.79
5558 5770 2.035442 GTCTCCGTTGGCTCCAAGC 61.035 63.158 0.83 0.00 41.46 4.01
5563 5775 2.579738 GGAGGTCTCCGTTGGCTC 59.420 66.667 0.77 0.00 40.36 4.70
5588 5800 1.208052 TCACCTCTCTATTGTGGCTGC 59.792 52.381 0.00 0.00 0.00 5.25
5672 5884 2.075355 TTTTGGGATCAGGCGGTGGT 62.075 55.000 0.00 0.00 0.00 4.16
5677 5889 5.520376 AATCTAATTTTTGGGATCAGGCG 57.480 39.130 0.00 0.00 0.00 5.52
5688 5900 6.911250 ACTCCGGGTGAAAATCTAATTTTT 57.089 33.333 0.00 0.00 42.15 1.94
5691 5903 6.954232 TCTTACTCCGGGTGAAAATCTAATT 58.046 36.000 0.00 0.00 0.00 1.40
5694 5906 5.659525 TCATCTTACTCCGGGTGAAAATCTA 59.340 40.000 0.00 0.00 0.00 1.98
5716 5928 2.741092 GCGTTCCCACTCCTGTCA 59.259 61.111 0.00 0.00 0.00 3.58
5721 5933 3.998672 TCACGGCGTTCCCACTCC 61.999 66.667 11.19 0.00 0.00 3.85
5740 5952 3.070302 GCCGTATCTTTCCTGAAGGATCT 59.930 47.826 7.66 0.00 44.98 2.75
5756 5968 1.817941 GCGGTTGGTGATGCCGTAT 60.818 57.895 4.16 0.00 46.41 3.06
5781 5993 1.445582 GTCCTTACACTGGCCGTCG 60.446 63.158 0.00 0.00 0.00 5.12
5783 5995 1.198759 ATGGTCCTTACACTGGCCGT 61.199 55.000 0.00 0.00 0.00 5.68
5790 6002 4.142038 AGTGAAAACCATGGTCCTTACAC 58.858 43.478 20.07 21.18 0.00 2.90
5810 6022 5.765182 ATTTCACCGAAATCTCACTGAAAGT 59.235 36.000 0.00 0.00 42.81 2.66
5811 6023 5.673337 TTTCACCGAAATCTCACTGAAAG 57.327 39.130 0.00 0.00 42.29 2.62
5812 6024 6.262049 TGAATTTCACCGAAATCTCACTGAAA 59.738 34.615 2.62 0.00 40.77 2.69
5813 6025 5.762711 TGAATTTCACCGAAATCTCACTGAA 59.237 36.000 2.62 0.00 40.77 3.02
5814 6026 5.179368 GTGAATTTCACCGAAATCTCACTGA 59.821 40.000 17.07 0.00 40.77 3.41
5815 6027 5.385617 GTGAATTTCACCGAAATCTCACTG 58.614 41.667 17.07 0.00 40.77 3.66
5816 6028 5.613358 GTGAATTTCACCGAAATCTCACT 57.387 39.130 17.07 4.84 40.77 3.41
5839 6051 5.243507 TGCCTGCTGAAATTACTGAAATTCA 59.756 36.000 0.00 0.00 36.76 2.57
5840 6052 5.574443 GTGCCTGCTGAAATTACTGAAATTC 59.426 40.000 0.00 0.00 36.76 2.17
5841 6053 5.244626 AGTGCCTGCTGAAATTACTGAAATT 59.755 36.000 0.00 0.00 39.56 1.82
5842 6054 4.768968 AGTGCCTGCTGAAATTACTGAAAT 59.231 37.500 0.00 0.00 0.00 2.17
5843 6055 4.144297 AGTGCCTGCTGAAATTACTGAAA 58.856 39.130 0.00 0.00 0.00 2.69
5844 6056 3.754965 AGTGCCTGCTGAAATTACTGAA 58.245 40.909 0.00 0.00 0.00 3.02
5845 6057 3.423539 AGTGCCTGCTGAAATTACTGA 57.576 42.857 0.00 0.00 0.00 3.41
5846 6058 5.627499 TTTAGTGCCTGCTGAAATTACTG 57.373 39.130 0.00 0.00 0.00 2.74
5847 6059 6.840780 ATTTTAGTGCCTGCTGAAATTACT 57.159 33.333 0.00 0.00 32.92 2.24
5850 6062 9.754382 CATAATATTTTAGTGCCTGCTGAAATT 57.246 29.630 0.00 0.00 36.51 1.82
5851 6063 8.917088 ACATAATATTTTAGTGCCTGCTGAAAT 58.083 29.630 0.00 7.52 38.00 2.17
5852 6064 8.292444 ACATAATATTTTAGTGCCTGCTGAAA 57.708 30.769 0.00 0.00 0.00 2.69
5853 6065 7.880160 ACATAATATTTTAGTGCCTGCTGAA 57.120 32.000 0.00 0.00 0.00 3.02
5854 6066 7.880160 AACATAATATTTTAGTGCCTGCTGA 57.120 32.000 0.00 0.00 0.00 4.26
5855 6067 7.376866 CGAAACATAATATTTTAGTGCCTGCTG 59.623 37.037 0.00 0.00 0.00 4.41
5856 6068 7.417612 CGAAACATAATATTTTAGTGCCTGCT 58.582 34.615 0.00 0.00 0.00 4.24
5857 6069 6.636850 CCGAAACATAATATTTTAGTGCCTGC 59.363 38.462 0.00 0.00 0.00 4.85
5858 6070 6.636850 GCCGAAACATAATATTTTAGTGCCTG 59.363 38.462 0.00 0.00 0.00 4.85
5859 6071 6.238925 GGCCGAAACATAATATTTTAGTGCCT 60.239 38.462 0.00 0.00 0.00 4.75
5860 6072 5.918576 GGCCGAAACATAATATTTTAGTGCC 59.081 40.000 0.00 0.00 0.00 5.01
5861 6073 6.500041 TGGCCGAAACATAATATTTTAGTGC 58.500 36.000 0.00 0.00 0.00 4.40
5862 6074 8.918961 TTTGGCCGAAACATAATATTTTAGTG 57.081 30.769 1.75 0.00 0.00 2.74
5870 6082 9.743057 CTGAAATATTTTGGCCGAAACATAATA 57.257 29.630 20.75 9.08 0.00 0.98
5871 6083 7.224557 GCTGAAATATTTTGGCCGAAACATAAT 59.775 33.333 20.75 7.42 0.00 1.28
5872 6084 6.533367 GCTGAAATATTTTGGCCGAAACATAA 59.467 34.615 20.75 7.15 0.00 1.90
5873 6085 6.039616 GCTGAAATATTTTGGCCGAAACATA 58.960 36.000 20.75 10.53 0.00 2.29
5874 6086 4.869861 GCTGAAATATTTTGGCCGAAACAT 59.130 37.500 20.75 12.14 0.00 2.71
5875 6087 4.241681 GCTGAAATATTTTGGCCGAAACA 58.758 39.130 20.75 9.96 0.00 2.83
5876 6088 3.303229 CGCTGAAATATTTTGGCCGAAAC 59.697 43.478 20.75 8.10 0.00 2.78
5877 6089 3.191581 TCGCTGAAATATTTTGGCCGAAA 59.808 39.130 20.60 20.60 0.00 3.46
5878 6090 2.750166 TCGCTGAAATATTTTGGCCGAA 59.250 40.909 0.00 0.00 0.00 4.30
5879 6091 2.360844 TCGCTGAAATATTTTGGCCGA 58.639 42.857 15.68 12.33 0.00 5.54
5880 6092 2.842208 TCGCTGAAATATTTTGGCCG 57.158 45.000 15.68 10.78 0.00 6.13
5881 6093 5.108517 TGAAATCGCTGAAATATTTTGGCC 58.891 37.500 15.68 0.00 0.00 5.36
5882 6094 5.807011 ACTGAAATCGCTGAAATATTTTGGC 59.193 36.000 1.43 8.81 0.00 4.52
5885 6097 9.884465 GCTATACTGAAATCGCTGAAATATTTT 57.116 29.630 1.43 0.00 0.00 1.82
5886 6098 9.056005 TGCTATACTGAAATCGCTGAAATATTT 57.944 29.630 0.00 0.00 0.00 1.40
5887 6099 8.499162 GTGCTATACTGAAATCGCTGAAATATT 58.501 33.333 0.00 0.00 0.00 1.28
5888 6100 7.657354 TGTGCTATACTGAAATCGCTGAAATAT 59.343 33.333 0.00 0.00 0.00 1.28
5889 6101 6.983890 TGTGCTATACTGAAATCGCTGAAATA 59.016 34.615 0.00 0.00 0.00 1.40
5890 6102 5.817296 TGTGCTATACTGAAATCGCTGAAAT 59.183 36.000 0.00 0.00 0.00 2.17
5891 6103 5.063438 GTGTGCTATACTGAAATCGCTGAAA 59.937 40.000 0.00 0.00 0.00 2.69
5892 6104 4.566759 GTGTGCTATACTGAAATCGCTGAA 59.433 41.667 0.00 0.00 0.00 3.02
5893 6105 4.112634 GTGTGCTATACTGAAATCGCTGA 58.887 43.478 0.00 0.00 0.00 4.26
5894 6106 3.246226 GGTGTGCTATACTGAAATCGCTG 59.754 47.826 0.00 0.00 0.00 5.18
5895 6107 3.118775 TGGTGTGCTATACTGAAATCGCT 60.119 43.478 0.00 0.00 0.00 4.93
5896 6108 3.194861 TGGTGTGCTATACTGAAATCGC 58.805 45.455 0.00 0.00 0.00 4.58
5897 6109 5.991328 ATTGGTGTGCTATACTGAAATCG 57.009 39.130 0.00 0.00 0.00 3.34
5898 6110 6.318648 TGGAATTGGTGTGCTATACTGAAATC 59.681 38.462 0.00 0.00 0.00 2.17
5899 6111 6.186957 TGGAATTGGTGTGCTATACTGAAAT 58.813 36.000 0.00 0.00 0.00 2.17
5900 6112 5.565509 TGGAATTGGTGTGCTATACTGAAA 58.434 37.500 0.00 0.00 0.00 2.69
5901 6113 5.172687 TGGAATTGGTGTGCTATACTGAA 57.827 39.130 0.00 0.00 0.00 3.02
5902 6114 4.835284 TGGAATTGGTGTGCTATACTGA 57.165 40.909 0.00 0.00 0.00 3.41
5903 6115 7.750229 ATATTGGAATTGGTGTGCTATACTG 57.250 36.000 0.00 0.00 0.00 2.74
5904 6116 8.766994 AAATATTGGAATTGGTGTGCTATACT 57.233 30.769 0.00 0.00 0.00 2.12
5905 6117 9.816354 AAAAATATTGGAATTGGTGTGCTATAC 57.184 29.630 0.00 0.00 0.00 1.47
5907 6119 8.538701 TGAAAAATATTGGAATTGGTGTGCTAT 58.461 29.630 0.00 0.00 0.00 2.97
5908 6120 7.901029 TGAAAAATATTGGAATTGGTGTGCTA 58.099 30.769 0.00 0.00 0.00 3.49
5909 6121 6.767456 TGAAAAATATTGGAATTGGTGTGCT 58.233 32.000 0.00 0.00 0.00 4.40
5910 6122 7.432350 TTGAAAAATATTGGAATTGGTGTGC 57.568 32.000 0.00 0.00 0.00 4.57
5957 6169 9.927668 AAATGACCGAAATATTCACTTGAATTT 57.072 25.926 9.68 0.53 41.64 1.82
5958 6170 9.357652 CAAATGACCGAAATATTCACTTGAATT 57.642 29.630 9.68 0.00 41.64 2.17
5959 6171 7.975616 CCAAATGACCGAAATATTCACTTGAAT 59.024 33.333 9.37 9.37 45.77 2.57
5960 6172 7.312154 CCAAATGACCGAAATATTCACTTGAA 58.688 34.615 0.00 0.00 38.56 2.69
5961 6173 6.624861 GCCAAATGACCGAAATATTCACTTGA 60.625 38.462 0.00 0.00 29.95 3.02
5962 6174 5.516339 GCCAAATGACCGAAATATTCACTTG 59.484 40.000 0.00 0.00 0.00 3.16
5963 6175 5.418840 AGCCAAATGACCGAAATATTCACTT 59.581 36.000 0.00 0.00 0.00 3.16
5964 6176 4.949856 AGCCAAATGACCGAAATATTCACT 59.050 37.500 0.00 0.00 0.00 3.41
5965 6177 5.036737 CAGCCAAATGACCGAAATATTCAC 58.963 41.667 0.00 0.00 0.00 3.18
5966 6178 4.946772 TCAGCCAAATGACCGAAATATTCA 59.053 37.500 0.00 0.00 0.00 2.57
5967 6179 5.499139 TCAGCCAAATGACCGAAATATTC 57.501 39.130 0.00 0.00 0.00 1.75
5968 6180 5.913137 TTCAGCCAAATGACCGAAATATT 57.087 34.783 0.00 0.00 0.00 1.28
5969 6181 5.913137 TTTCAGCCAAATGACCGAAATAT 57.087 34.783 0.00 0.00 0.00 1.28
5970 6182 5.913137 ATTTCAGCCAAATGACCGAAATA 57.087 34.783 0.00 0.00 33.07 1.40
5971 6183 4.806640 ATTTCAGCCAAATGACCGAAAT 57.193 36.364 0.00 0.00 33.07 2.17
5980 6192 5.549742 TTCAGTTTCCATTTCAGCCAAAT 57.450 34.783 0.00 0.00 34.79 2.32
5981 6193 5.350504 TTTCAGTTTCCATTTCAGCCAAA 57.649 34.783 0.00 0.00 0.00 3.28
5982 6194 5.549742 ATTTCAGTTTCCATTTCAGCCAA 57.450 34.783 0.00 0.00 0.00 4.52
5983 6195 5.549742 AATTTCAGTTTCCATTTCAGCCA 57.450 34.783 0.00 0.00 0.00 4.75
5984 6196 6.587608 CAGTAATTTCAGTTTCCATTTCAGCC 59.412 38.462 0.00 0.00 0.00 4.85
5985 6197 7.115378 CACAGTAATTTCAGTTTCCATTTCAGC 59.885 37.037 0.00 0.00 0.00 4.26
5986 6198 8.352201 TCACAGTAATTTCAGTTTCCATTTCAG 58.648 33.333 0.00 0.00 0.00 3.02
5987 6199 8.231692 TCACAGTAATTTCAGTTTCCATTTCA 57.768 30.769 0.00 0.00 0.00 2.69
5988 6200 9.696917 ATTCACAGTAATTTCAGTTTCCATTTC 57.303 29.630 0.00 0.00 0.00 2.17
6001 6213 9.398170 CGAAATCACTGAAATTCACAGTAATTT 57.602 29.630 18.51 18.51 44.09 1.82
6002 6214 8.023128 CCGAAATCACTGAAATTCACAGTAATT 58.977 33.333 14.81 11.17 45.15 1.40
6003 6215 7.174946 ACCGAAATCACTGAAATTCACAGTAAT 59.825 33.333 14.81 6.71 45.15 1.89
6004 6216 6.485313 ACCGAAATCACTGAAATTCACAGTAA 59.515 34.615 14.81 4.94 45.15 2.24
6005 6217 5.995282 ACCGAAATCACTGAAATTCACAGTA 59.005 36.000 14.81 7.28 45.15 2.74
6007 6219 5.362556 ACCGAAATCACTGAAATTCACAG 57.637 39.130 9.93 9.93 40.68 3.66
6008 6220 5.507149 CCAACCGAAATCACTGAAATTCACA 60.507 40.000 0.00 0.00 0.00 3.58
6009 6221 4.917415 CCAACCGAAATCACTGAAATTCAC 59.083 41.667 0.00 0.00 0.00 3.18
6010 6222 4.582656 ACCAACCGAAATCACTGAAATTCA 59.417 37.500 0.00 0.00 0.00 2.57
6011 6223 4.917415 CACCAACCGAAATCACTGAAATTC 59.083 41.667 0.00 0.00 0.00 2.17
6012 6224 4.795962 GCACCAACCGAAATCACTGAAATT 60.796 41.667 0.00 0.00 0.00 1.82
6013 6225 3.305335 GCACCAACCGAAATCACTGAAAT 60.305 43.478 0.00 0.00 0.00 2.17
6014 6226 2.034053 GCACCAACCGAAATCACTGAAA 59.966 45.455 0.00 0.00 0.00 2.69
6015 6227 1.606668 GCACCAACCGAAATCACTGAA 59.393 47.619 0.00 0.00 0.00 3.02
6016 6228 1.202758 AGCACCAACCGAAATCACTGA 60.203 47.619 0.00 0.00 0.00 3.41
6017 6229 1.069022 CAGCACCAACCGAAATCACTG 60.069 52.381 0.00 0.00 0.00 3.66
6018 6230 1.202758 TCAGCACCAACCGAAATCACT 60.203 47.619 0.00 0.00 0.00 3.41
6019 6231 1.234821 TCAGCACCAACCGAAATCAC 58.765 50.000 0.00 0.00 0.00 3.06
6020 6232 1.974265 TTCAGCACCAACCGAAATCA 58.026 45.000 0.00 0.00 0.00 2.57
6021 6233 3.575965 ATTTCAGCACCAACCGAAATC 57.424 42.857 0.00 0.00 33.87 2.17
6022 6234 4.335400 AAATTTCAGCACCAACCGAAAT 57.665 36.364 0.00 0.00 39.20 2.17
6023 6235 3.810310 AAATTTCAGCACCAACCGAAA 57.190 38.095 0.00 0.00 0.00 3.46
6024 6236 3.810310 AAAATTTCAGCACCAACCGAA 57.190 38.095 0.00 0.00 0.00 4.30
6025 6237 3.810310 AAAAATTTCAGCACCAACCGA 57.190 38.095 0.00 0.00 0.00 4.69
6043 6255 9.837525 CATGGTTTTCAATTTCAGTTTCAAAAA 57.162 25.926 0.00 0.00 0.00 1.94
6044 6256 8.457261 CCATGGTTTTCAATTTCAGTTTCAAAA 58.543 29.630 2.57 0.00 0.00 2.44
6045 6257 7.609532 ACCATGGTTTTCAATTTCAGTTTCAAA 59.390 29.630 13.00 0.00 0.00 2.69
6046 6258 7.108847 ACCATGGTTTTCAATTTCAGTTTCAA 58.891 30.769 13.00 0.00 0.00 2.69
6047 6259 6.648192 ACCATGGTTTTCAATTTCAGTTTCA 58.352 32.000 13.00 0.00 0.00 2.69
6048 6260 8.655651 TTACCATGGTTTTCAATTTCAGTTTC 57.344 30.769 25.38 0.00 0.00 2.78
6049 6261 7.714813 CCTTACCATGGTTTTCAATTTCAGTTT 59.285 33.333 25.38 0.00 0.00 2.66
6050 6262 7.070571 TCCTTACCATGGTTTTCAATTTCAGTT 59.929 33.333 25.38 0.00 0.00 3.16
6051 6263 6.553100 TCCTTACCATGGTTTTCAATTTCAGT 59.447 34.615 25.38 0.00 0.00 3.41
6052 6264 6.868339 GTCCTTACCATGGTTTTCAATTTCAG 59.132 38.462 25.38 0.00 0.00 3.02
6053 6265 6.239458 GGTCCTTACCATGGTTTTCAATTTCA 60.239 38.462 25.38 0.00 45.98 2.69
6054 6266 6.163476 GGTCCTTACCATGGTTTTCAATTTC 58.837 40.000 25.38 5.26 45.98 2.17
6055 6267 6.109156 GGTCCTTACCATGGTTTTCAATTT 57.891 37.500 25.38 0.00 45.98 1.82
6056 6268 5.738619 GGTCCTTACCATGGTTTTCAATT 57.261 39.130 25.38 0.00 45.98 2.32
6069 6281 1.376812 CACTTGGCCGGTCCTTACC 60.377 63.158 2.12 0.00 42.95 2.85
6070 6282 1.376812 CCACTTGGCCGGTCCTTAC 60.377 63.158 2.12 0.00 35.26 2.34
6071 6283 0.544833 TACCACTTGGCCGGTCCTTA 60.545 55.000 2.12 0.00 39.32 2.69
6072 6284 1.844289 TACCACTTGGCCGGTCCTT 60.844 57.895 2.12 0.00 39.32 3.36
6073 6285 2.203877 TACCACTTGGCCGGTCCT 60.204 61.111 2.12 0.00 39.32 3.85
6074 6286 2.046604 GTACCACTTGGCCGGTCC 60.047 66.667 2.12 5.67 39.32 4.46
6075 6287 2.046604 GGTACCACTTGGCCGGTC 60.047 66.667 7.15 0.00 39.32 4.79
6088 6300 2.105729 GTAAGAGCGCCGGGGTAC 59.894 66.667 20.83 13.86 0.00 3.34
6089 6301 3.149648 GGTAAGAGCGCCGGGGTA 61.150 66.667 20.83 1.06 0.00 3.69
6092 6304 4.222847 GAGGGTAAGAGCGCCGGG 62.223 72.222 2.29 0.00 0.00 5.73
6093 6305 4.222847 GGAGGGTAAGAGCGCCGG 62.223 72.222 2.29 0.00 0.00 6.13
6094 6306 4.570663 CGGAGGGTAAGAGCGCCG 62.571 72.222 2.29 0.00 0.00 6.46
6095 6307 3.427598 GACGGAGGGTAAGAGCGCC 62.428 68.421 2.29 0.00 0.00 6.53
6096 6308 2.104530 GACGGAGGGTAAGAGCGC 59.895 66.667 0.00 0.00 0.00 5.92
6097 6309 2.408022 CGACGGAGGGTAAGAGCG 59.592 66.667 0.00 0.00 0.00 5.03
6098 6310 2.104530 GCGACGGAGGGTAAGAGC 59.895 66.667 0.00 0.00 0.00 4.09
6099 6311 1.139095 GTGCGACGGAGGGTAAGAG 59.861 63.158 0.00 0.00 0.00 2.85
6100 6312 2.345760 GGTGCGACGGAGGGTAAGA 61.346 63.158 0.00 0.00 0.00 2.10
6101 6313 1.885163 AAGGTGCGACGGAGGGTAAG 61.885 60.000 0.00 0.00 0.00 2.34
6102 6314 0.611618 TAAGGTGCGACGGAGGGTAA 60.612 55.000 0.00 0.00 0.00 2.85
6103 6315 1.001020 TAAGGTGCGACGGAGGGTA 60.001 57.895 0.00 0.00 0.00 3.69
6104 6316 2.283388 TAAGGTGCGACGGAGGGT 60.283 61.111 0.00 0.00 0.00 4.34
6105 6317 2.494918 CTAAGGTGCGACGGAGGG 59.505 66.667 0.00 0.00 0.00 4.30
6106 6318 2.202756 GCTAAGGTGCGACGGAGG 60.203 66.667 0.00 0.00 0.00 4.30
6107 6319 1.226717 GAGCTAAGGTGCGACGGAG 60.227 63.158 0.00 0.00 38.13 4.63
6108 6320 2.707849 GGAGCTAAGGTGCGACGGA 61.708 63.158 0.00 0.00 38.13 4.69
6109 6321 2.202756 GGAGCTAAGGTGCGACGG 60.203 66.667 0.00 0.00 38.13 4.79
6110 6322 2.579787 CGGAGCTAAGGTGCGACG 60.580 66.667 0.00 0.00 46.84 5.12


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.