Multiple sequence alignment - TraesCS5B01G544600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G544600 chr5B 100.000 3505 0 0 1 3505 697247146 697243642 0.000000e+00 6473.0
1 TraesCS5B01G544600 chr5B 94.693 603 32 0 1 603 441096601 441097203 0.000000e+00 937.0
2 TraesCS5B01G544600 chr5B 83.599 628 82 8 1998 2619 697568475 697567863 1.410000e-158 569.0
3 TraesCS5B01G544600 chr5B 85.221 521 39 12 2117 2631 697186897 697186409 5.220000e-138 501.0
4 TraesCS5B01G544600 chr5B 80.026 756 83 32 1059 1768 697187904 697187171 6.760000e-137 497.0
5 TraesCS5B01G544600 chr5B 82.696 601 64 23 2046 2619 697529729 697529142 6.760000e-137 497.0
6 TraesCS5B01G544600 chr5B 85.430 453 56 8 2693 3143 697186152 697185708 2.460000e-126 462.0
7 TraesCS5B01G544600 chr5B 87.089 395 40 4 1059 1442 697530488 697530094 1.490000e-118 436.0
8 TraesCS5B01G544600 chr5B 81.780 472 55 13 2155 2619 697610427 697609980 1.990000e-97 366.0
9 TraesCS5B01G544600 chr5B 79.630 540 75 21 2058 2573 8000366 8000894 4.300000e-94 355.0
10 TraesCS5B01G544600 chr5B 85.644 202 25 4 2420 2619 697615382 697615183 3.550000e-50 209.0
11 TraesCS5B01G544600 chr5B 77.261 387 53 19 2182 2559 575781574 575781214 9.930000e-46 195.0
12 TraesCS5B01G544600 chr5B 74.217 543 87 32 2861 3369 697614907 697614384 1.000000e-40 178.0
13 TraesCS5B01G544600 chr5B 85.000 100 12 1 2877 2973 697178461 697178362 8.010000e-17 99.0
14 TraesCS5B01G544600 chr5B 93.023 43 3 0 2577 2619 697508087 697508045 2.920000e-06 63.9
15 TraesCS5B01G544600 chr1B 93.888 769 47 0 1 769 394065881 394065113 0.000000e+00 1160.0
16 TraesCS5B01G544600 chr1B 93.081 766 51 2 1 766 680780078 680780841 0.000000e+00 1120.0
17 TraesCS5B01G544600 chr1B 89.857 769 77 1 1 769 683457754 683456987 0.000000e+00 987.0
18 TraesCS5B01G544600 chr1B 79.777 539 76 20 2058 2573 347845210 347844682 9.250000e-96 361.0
19 TraesCS5B01G544600 chr1A 92.348 758 58 0 1 758 564124631 564123874 0.000000e+00 1079.0
20 TraesCS5B01G544600 chr5A 91.287 769 59 3 1 769 591310705 591309945 0.000000e+00 1042.0
21 TraesCS5B01G544600 chr5A 79.518 415 63 12 2154 2559 589221501 589221100 3.450000e-70 276.0
22 TraesCS5B01G544600 chr2D 90.117 769 71 2 1 769 602685483 602684720 0.000000e+00 994.0
23 TraesCS5B01G544600 chr3A 92.496 693 52 0 74 766 57256357 57257049 0.000000e+00 992.0
24 TraesCS5B01G544600 chr7B 92.803 528 38 0 239 766 56492155 56492682 0.000000e+00 765.0
25 TraesCS5B01G544600 chr7B 78.810 538 81 19 2059 2573 613655952 613655425 7.250000e-87 331.0
26 TraesCS5B01G544600 chr4D 79.844 769 147 8 1 765 308368915 308368151 3.950000e-154 555.0
27 TraesCS5B01G544600 chr5D 86.267 517 39 11 2117 2632 553506809 553507294 1.850000e-147 532.0
28 TraesCS5B01G544600 chr5D 86.976 453 56 3 2693 3143 553507434 553507885 1.120000e-139 507.0
29 TraesCS5B01G544600 chr5D 78.879 767 83 34 1059 1768 553505791 553506535 2.480000e-121 446.0
30 TraesCS5B01G544600 chr5D 87.324 284 23 9 1766 2041 553506575 553506853 2.630000e-81 313.0
31 TraesCS5B01G544600 chr5D 78.571 378 58 13 2191 2559 469060398 469060035 9.790000e-56 228.0
32 TraesCS5B01G544600 chr4A 80.182 661 84 30 1998 2619 615180187 615179535 5.340000e-123 451.0
33 TraesCS5B01G544600 chr4A 84.890 364 44 5 1081 1434 615198022 615197660 1.200000e-94 357.0
34 TraesCS5B01G544600 chr4A 78.049 451 84 9 992 1427 615201634 615201184 1.600000e-68 270.0
35 TraesCS5B01G544600 chr4A 88.333 60 5 2 2091 2148 615180214 615180155 1.750000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G544600 chr5B 697243642 697247146 3504 True 6473.000000 6473 100.0000 1 3505 1 chr5B.!!$R3 3504
1 TraesCS5B01G544600 chr5B 441096601 441097203 602 False 937.000000 937 94.6930 1 603 1 chr5B.!!$F2 602
2 TraesCS5B01G544600 chr5B 697567863 697568475 612 True 569.000000 569 83.5990 1998 2619 1 chr5B.!!$R5 621
3 TraesCS5B01G544600 chr5B 697185708 697187904 2196 True 486.666667 501 83.5590 1059 3143 3 chr5B.!!$R6 2084
4 TraesCS5B01G544600 chr5B 697529142 697530488 1346 True 466.500000 497 84.8925 1059 2619 2 chr5B.!!$R7 1560
5 TraesCS5B01G544600 chr5B 8000366 8000894 528 False 355.000000 355 79.6300 2058 2573 1 chr5B.!!$F1 515
6 TraesCS5B01G544600 chr5B 697609980 697615382 5402 True 251.000000 366 80.5470 2155 3369 3 chr5B.!!$R8 1214
7 TraesCS5B01G544600 chr1B 394065113 394065881 768 True 1160.000000 1160 93.8880 1 769 1 chr1B.!!$R2 768
8 TraesCS5B01G544600 chr1B 680780078 680780841 763 False 1120.000000 1120 93.0810 1 766 1 chr1B.!!$F1 765
9 TraesCS5B01G544600 chr1B 683456987 683457754 767 True 987.000000 987 89.8570 1 769 1 chr1B.!!$R3 768
10 TraesCS5B01G544600 chr1B 347844682 347845210 528 True 361.000000 361 79.7770 2058 2573 1 chr1B.!!$R1 515
11 TraesCS5B01G544600 chr1A 564123874 564124631 757 True 1079.000000 1079 92.3480 1 758 1 chr1A.!!$R1 757
12 TraesCS5B01G544600 chr5A 591309945 591310705 760 True 1042.000000 1042 91.2870 1 769 1 chr5A.!!$R2 768
13 TraesCS5B01G544600 chr2D 602684720 602685483 763 True 994.000000 994 90.1170 1 769 1 chr2D.!!$R1 768
14 TraesCS5B01G544600 chr3A 57256357 57257049 692 False 992.000000 992 92.4960 74 766 1 chr3A.!!$F1 692
15 TraesCS5B01G544600 chr7B 56492155 56492682 527 False 765.000000 765 92.8030 239 766 1 chr7B.!!$F1 527
16 TraesCS5B01G544600 chr7B 613655425 613655952 527 True 331.000000 331 78.8100 2059 2573 1 chr7B.!!$R1 514
17 TraesCS5B01G544600 chr4D 308368151 308368915 764 True 555.000000 555 79.8440 1 765 1 chr4D.!!$R1 764
18 TraesCS5B01G544600 chr5D 553505791 553507885 2094 False 449.500000 532 84.8615 1059 3143 4 chr5D.!!$F1 2084
19 TraesCS5B01G544600 chr4A 615197660 615201634 3974 True 313.500000 357 81.4695 992 1434 2 chr4A.!!$R2 442
20 TraesCS5B01G544600 chr4A 615179535 615180214 679 True 261.150000 451 84.2575 1998 2619 2 chr4A.!!$R1 621

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
895 896 0.099082 CTCTGTACCTCGCTCCGTTC 59.901 60.0 0.0 0.0 0.0 3.95 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2781 5883 0.111253 AGAAAAGGTGACCCCTGCAG 59.889 55.0 6.78 6.78 45.47 4.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
56 57 0.988145 CCTCCCTAGGGCAATGGACA 60.988 60.000 24.42 1.74 39.48 4.02
315 316 2.136878 CCCCCTCTGTCATCCCTCG 61.137 68.421 0.00 0.00 0.00 4.63
432 433 0.175073 CTTTACCCCCGTCTCCTTCG 59.825 60.000 0.00 0.00 0.00 3.79
766 767 1.526575 CCACCTGCACACATTGGACC 61.527 60.000 0.00 0.00 32.73 4.46
769 770 1.575922 CTGCACACATTGGACCGTG 59.424 57.895 0.00 0.00 39.10 4.94
770 771 1.855213 CTGCACACATTGGACCGTGG 61.855 60.000 3.46 0.00 37.45 4.94
771 772 2.953821 CACACATTGGACCGTGGC 59.046 61.111 3.46 0.00 37.45 5.01
772 773 1.896183 CACACATTGGACCGTGGCA 60.896 57.895 3.46 0.00 37.45 4.92
773 774 1.896660 ACACATTGGACCGTGGCAC 60.897 57.895 7.79 7.79 37.45 5.01
774 775 1.600636 CACATTGGACCGTGGCACT 60.601 57.895 16.72 0.00 0.00 4.40
775 776 1.150536 ACATTGGACCGTGGCACTT 59.849 52.632 16.72 1.71 0.00 3.16
776 777 0.398696 ACATTGGACCGTGGCACTTA 59.601 50.000 16.72 0.00 0.00 2.24
777 778 1.004277 ACATTGGACCGTGGCACTTAT 59.996 47.619 16.72 0.00 0.00 1.73
778 779 1.401552 CATTGGACCGTGGCACTTATG 59.598 52.381 16.72 4.03 0.00 1.90
781 782 1.624312 TGGACCGTGGCACTTATGTAA 59.376 47.619 16.72 0.00 0.00 2.41
782 783 2.277084 GGACCGTGGCACTTATGTAAG 58.723 52.381 16.72 0.00 39.18 2.34
783 784 2.277084 GACCGTGGCACTTATGTAAGG 58.723 52.381 16.72 9.13 37.62 2.69
784 785 1.065709 ACCGTGGCACTTATGTAAGGG 60.066 52.381 16.72 8.39 39.68 3.95
785 786 1.208535 CCGTGGCACTTATGTAAGGGA 59.791 52.381 16.72 0.00 39.02 4.20
786 787 2.355310 CCGTGGCACTTATGTAAGGGAA 60.355 50.000 16.72 0.00 39.02 3.97
787 788 2.676342 CGTGGCACTTATGTAAGGGAAC 59.324 50.000 16.72 3.00 39.02 3.62
788 789 2.676342 GTGGCACTTATGTAAGGGAACG 59.324 50.000 11.13 0.00 39.02 3.95
789 790 1.669265 GGCACTTATGTAAGGGAACGC 59.331 52.381 6.22 0.56 39.02 4.84
790 791 1.326548 GCACTTATGTAAGGGAACGCG 59.673 52.381 3.53 3.53 39.02 6.01
791 792 2.613691 CACTTATGTAAGGGAACGCGT 58.386 47.619 5.58 5.58 39.02 6.01
792 793 2.347452 CACTTATGTAAGGGAACGCGTG 59.653 50.000 14.98 0.00 39.02 5.34
793 794 1.931172 CTTATGTAAGGGAACGCGTGG 59.069 52.381 14.98 0.00 0.00 4.94
794 795 1.184431 TATGTAAGGGAACGCGTGGA 58.816 50.000 14.98 0.00 0.00 4.02
795 796 0.390735 ATGTAAGGGAACGCGTGGAC 60.391 55.000 14.98 7.73 0.00 4.02
796 797 1.291272 GTAAGGGAACGCGTGGACT 59.709 57.895 14.98 8.43 0.00 3.85
798 799 0.393820 TAAGGGAACGCGTGGACTTT 59.606 50.000 14.98 11.45 0.00 2.66
800 801 0.464916 AGGGAACGCGTGGACTTTTT 60.465 50.000 14.98 0.00 0.00 1.94
820 821 1.573108 TGCCACCAAAGGTTTTCCAA 58.427 45.000 0.00 0.00 43.73 3.53
821 822 1.484240 TGCCACCAAAGGTTTTCCAAG 59.516 47.619 0.00 0.00 43.73 3.61
822 823 1.810031 GCCACCAAAGGTTTTCCAAGC 60.810 52.381 0.00 0.00 43.73 4.01
823 824 1.202639 CCACCAAAGGTTTTCCAAGCC 60.203 52.381 0.00 0.00 43.73 4.35
825 826 2.093235 CACCAAAGGTTTTCCAAGCCAA 60.093 45.455 0.00 0.00 43.73 4.52
830 831 1.072173 AGGTTTTCCAAGCCAAATGCC 59.928 47.619 0.00 0.00 43.73 4.40
832 833 1.043816 TTTTCCAAGCCAAATGCCGA 58.956 45.000 0.00 0.00 42.71 5.54
834 835 0.539438 TTCCAAGCCAAATGCCGAGT 60.539 50.000 0.00 0.00 42.71 4.18
836 837 0.734889 CCAAGCCAAATGCCGAGTAG 59.265 55.000 0.00 0.00 42.71 2.57
837 838 1.453155 CAAGCCAAATGCCGAGTAGT 58.547 50.000 0.00 0.00 42.71 2.73
839 840 3.206150 CAAGCCAAATGCCGAGTAGTAT 58.794 45.455 0.00 0.00 42.71 2.12
840 841 3.560636 AGCCAAATGCCGAGTAGTATT 57.439 42.857 0.00 0.00 42.71 1.89
842 843 5.031066 AGCCAAATGCCGAGTAGTATTTA 57.969 39.130 0.00 0.00 42.71 1.40
843 844 5.621193 AGCCAAATGCCGAGTAGTATTTAT 58.379 37.500 0.00 0.00 42.71 1.40
845 846 6.017109 AGCCAAATGCCGAGTAGTATTTATTG 60.017 38.462 0.00 0.00 42.71 1.90
846 847 6.142817 CCAAATGCCGAGTAGTATTTATTGC 58.857 40.000 0.00 0.00 0.00 3.56
847 848 5.941948 AATGCCGAGTAGTATTTATTGCC 57.058 39.130 0.00 0.00 0.00 4.52
848 849 3.735591 TGCCGAGTAGTATTTATTGCCC 58.264 45.455 0.00 0.00 0.00 5.36
849 850 2.735134 GCCGAGTAGTATTTATTGCCCG 59.265 50.000 0.00 0.00 0.00 6.13
850 851 3.323243 CCGAGTAGTATTTATTGCCCGG 58.677 50.000 0.00 0.00 0.00 5.73
851 852 2.735134 CGAGTAGTATTTATTGCCCGGC 59.265 50.000 1.04 1.04 0.00 6.13
852 853 2.735134 GAGTAGTATTTATTGCCCGGCG 59.265 50.000 4.58 0.00 0.00 6.46
853 854 2.366266 AGTAGTATTTATTGCCCGGCGA 59.634 45.455 9.30 0.48 0.00 5.54
854 855 1.878953 AGTATTTATTGCCCGGCGAG 58.121 50.000 9.30 0.00 0.00 5.03
855 856 0.872388 GTATTTATTGCCCGGCGAGG 59.128 55.000 9.30 9.53 40.63 4.63
857 858 1.101049 ATTTATTGCCCGGCGAGGTG 61.101 55.000 9.30 0.00 38.74 4.00
858 859 2.186602 TTTATTGCCCGGCGAGGTGA 62.187 55.000 9.30 1.46 38.74 4.02
859 860 2.862674 TTATTGCCCGGCGAGGTGAC 62.863 60.000 9.30 0.00 38.74 3.67
863 864 3.461773 CCCGGCGAGGTGACTGAT 61.462 66.667 9.30 0.00 44.43 2.90
864 865 2.579201 CCGGCGAGGTGACTGATT 59.421 61.111 9.30 0.00 44.43 2.57
865 866 1.079127 CCGGCGAGGTGACTGATTT 60.079 57.895 9.30 0.00 44.43 2.17
866 867 0.673644 CCGGCGAGGTGACTGATTTT 60.674 55.000 9.30 0.00 44.43 1.82
867 868 0.443869 CGGCGAGGTGACTGATTTTG 59.556 55.000 0.00 0.00 44.43 2.44
868 869 0.169009 GGCGAGGTGACTGATTTTGC 59.831 55.000 0.00 0.00 44.43 3.68
869 870 0.169009 GCGAGGTGACTGATTTTGCC 59.831 55.000 0.00 0.00 44.43 4.52
872 873 1.212751 GGTGACTGATTTTGCCCGC 59.787 57.895 0.00 0.00 0.00 6.13
878 879 2.315038 CTGATTTTGCCCGCGCTCTC 62.315 60.000 5.56 0.00 35.36 3.20
879 880 2.045926 ATTTTGCCCGCGCTCTCT 60.046 55.556 5.56 0.00 35.36 3.10
880 881 2.315038 GATTTTGCCCGCGCTCTCTG 62.315 60.000 5.56 0.00 35.36 3.35
881 882 3.825160 TTTTGCCCGCGCTCTCTGT 62.825 57.895 5.56 0.00 35.36 3.41
882 883 2.443260 TTTTGCCCGCGCTCTCTGTA 62.443 55.000 5.56 0.00 35.36 2.74
883 884 3.642778 TTGCCCGCGCTCTCTGTAC 62.643 63.158 5.56 0.00 35.36 2.90
884 885 4.874977 GCCCGCGCTCTCTGTACC 62.875 72.222 5.56 0.00 0.00 3.34
886 887 2.409651 CCGCGCTCTCTGTACCTC 59.590 66.667 5.56 0.00 0.00 3.85
888 889 2.278271 GCGCTCTCTGTACCTCGC 60.278 66.667 0.00 0.00 35.82 5.03
889 890 2.766400 GCGCTCTCTGTACCTCGCT 61.766 63.158 0.00 0.00 39.51 4.93
890 891 1.353804 CGCTCTCTGTACCTCGCTC 59.646 63.158 0.00 0.00 0.00 5.03
891 892 1.731093 GCTCTCTGTACCTCGCTCC 59.269 63.158 0.00 0.00 0.00 4.70
892 893 2.018544 CTCTCTGTACCTCGCTCCG 58.981 63.158 0.00 0.00 0.00 4.63
893 894 0.745128 CTCTCTGTACCTCGCTCCGT 60.745 60.000 0.00 0.00 0.00 4.69
894 895 0.322277 TCTCTGTACCTCGCTCCGTT 60.322 55.000 0.00 0.00 0.00 4.44
895 896 0.099082 CTCTGTACCTCGCTCCGTTC 59.901 60.000 0.00 0.00 0.00 3.95
896 897 1.139095 CTGTACCTCGCTCCGTTCC 59.861 63.158 0.00 0.00 0.00 3.62
897 898 1.592400 CTGTACCTCGCTCCGTTCCA 61.592 60.000 0.00 0.00 0.00 3.53
899 900 2.345760 TACCTCGCTCCGTTCCACC 61.346 63.158 0.00 0.00 0.00 4.61
900 901 3.691342 CCTCGCTCCGTTCCACCA 61.691 66.667 0.00 0.00 0.00 4.17
901 902 2.342279 CTCGCTCCGTTCCACCAA 59.658 61.111 0.00 0.00 0.00 3.67
902 903 1.738099 CTCGCTCCGTTCCACCAAG 60.738 63.158 0.00 0.00 0.00 3.61
903 904 2.154798 CTCGCTCCGTTCCACCAAGA 62.155 60.000 0.00 0.00 0.00 3.02
904 905 1.738099 CGCTCCGTTCCACCAAGAG 60.738 63.158 0.00 0.00 0.00 2.85
905 906 1.376037 GCTCCGTTCCACCAAGAGG 60.376 63.158 0.00 0.00 42.21 3.69
906 907 1.827399 GCTCCGTTCCACCAAGAGGA 61.827 60.000 0.00 0.00 38.69 3.71
907 908 0.247736 CTCCGTTCCACCAAGAGGAG 59.752 60.000 0.00 0.00 39.18 3.69
908 909 1.376037 CCGTTCCACCAAGAGGAGC 60.376 63.158 0.00 0.00 36.33 4.70
909 910 4.285851 GTTCCACCAAGAGGAGCG 57.714 61.111 0.00 0.00 36.33 5.03
910 911 2.035442 GTTCCACCAAGAGGAGCGC 61.035 63.158 0.00 0.00 36.33 5.92
911 912 3.589654 TTCCACCAAGAGGAGCGCG 62.590 63.158 0.00 0.00 36.33 6.86
912 913 4.379243 CCACCAAGAGGAGCGCGT 62.379 66.667 8.43 0.00 38.69 6.01
913 914 2.811317 CACCAAGAGGAGCGCGTC 60.811 66.667 8.43 1.55 38.69 5.19
927 928 4.680237 CGTCCGTTCCAGCAGGCA 62.680 66.667 0.00 0.00 33.74 4.75
928 929 3.050275 GTCCGTTCCAGCAGGCAC 61.050 66.667 0.00 0.00 33.74 5.01
929 930 4.329545 TCCGTTCCAGCAGGCACC 62.330 66.667 0.00 0.00 33.74 5.01
931 932 4.641645 CGTTCCAGCAGGCACCCA 62.642 66.667 0.00 0.00 33.74 4.51
933 934 3.177884 TTCCAGCAGGCACCCACT 61.178 61.111 0.00 0.00 33.74 4.00
934 935 2.766925 TTCCAGCAGGCACCCACTT 61.767 57.895 0.00 0.00 33.74 3.16
935 936 2.981914 TTCCAGCAGGCACCCACTTG 62.982 60.000 0.00 0.00 33.74 3.16
939 940 4.641645 CAGGCACCCACTTGGCGA 62.642 66.667 0.00 0.00 46.49 5.54
942 943 4.643387 GCACCCACTTGGCGACCT 62.643 66.667 0.00 0.00 37.83 3.85
943 944 2.358737 CACCCACTTGGCGACCTC 60.359 66.667 0.00 0.00 37.83 3.85
946 947 2.671070 CCACTTGGCGACCTCCAT 59.329 61.111 0.00 0.00 35.77 3.41
948 949 1.450312 CACTTGGCGACCTCCATCC 60.450 63.158 0.00 0.00 35.77 3.51
949 950 2.202932 CTTGGCGACCTCCATCCG 60.203 66.667 0.00 0.00 35.77 4.18
950 951 2.682136 TTGGCGACCTCCATCCGA 60.682 61.111 0.00 0.00 35.77 4.55
951 952 2.907897 CTTGGCGACCTCCATCCGAC 62.908 65.000 0.00 0.00 35.77 4.79
953 954 4.222847 GCGACCTCCATCCGACCC 62.223 72.222 0.00 0.00 0.00 4.46
954 955 3.537874 CGACCTCCATCCGACCCC 61.538 72.222 0.00 0.00 0.00 4.95
955 956 2.365105 GACCTCCATCCGACCCCA 60.365 66.667 0.00 0.00 0.00 4.96
956 957 2.687566 ACCTCCATCCGACCCCAC 60.688 66.667 0.00 0.00 0.00 4.61
958 959 3.849951 CTCCATCCGACCCCACCG 61.850 72.222 0.00 0.00 0.00 4.94
959 960 4.707768 TCCATCCGACCCCACCGT 62.708 66.667 0.00 0.00 0.00 4.83
960 961 2.760799 CCATCCGACCCCACCGTA 60.761 66.667 0.00 0.00 0.00 4.02
961 962 2.792947 CCATCCGACCCCACCGTAG 61.793 68.421 0.00 0.00 0.00 3.51
962 963 1.755395 CATCCGACCCCACCGTAGA 60.755 63.158 0.00 0.00 0.00 2.59
963 964 1.455217 ATCCGACCCCACCGTAGAG 60.455 63.158 0.00 0.00 0.00 2.43
978 979 5.470845 CCGTAGAGGTAAAGAAATTGCAG 57.529 43.478 0.00 0.00 34.51 4.41
979 980 4.332819 CCGTAGAGGTAAAGAAATTGCAGG 59.667 45.833 0.00 0.00 34.51 4.85
981 982 4.039603 AGAGGTAAAGAAATTGCAGGCT 57.960 40.909 0.00 0.00 0.00 4.58
982 983 4.013050 AGAGGTAAAGAAATTGCAGGCTC 58.987 43.478 0.00 0.00 0.00 4.70
984 985 2.166459 GGTAAAGAAATTGCAGGCTCCC 59.834 50.000 0.00 0.00 0.00 4.30
986 987 0.615827 AAGAAATTGCAGGCTCCCCC 60.616 55.000 0.00 0.00 0.00 5.40
988 989 3.224007 AAATTGCAGGCTCCCCCGT 62.224 57.895 0.00 0.00 39.21 5.28
989 990 1.858739 AAATTGCAGGCTCCCCCGTA 61.859 55.000 0.00 0.00 39.21 4.02
990 991 1.645402 AATTGCAGGCTCCCCCGTAT 61.645 55.000 0.00 0.00 39.21 3.06
992 993 2.111251 GCAGGCTCCCCCGTATTC 59.889 66.667 0.00 0.00 39.21 1.75
993 994 2.421739 CAGGCTCCCCCGTATTCG 59.578 66.667 0.00 0.00 39.21 3.34
995 996 1.152312 AGGCTCCCCCGTATTCGAT 60.152 57.895 0.00 0.00 39.71 3.59
996 997 1.186267 AGGCTCCCCCGTATTCGATC 61.186 60.000 0.00 0.00 39.71 3.69
999 1000 0.889306 CTCCCCCGTATTCGATCTCC 59.111 60.000 0.00 0.00 39.71 3.71
1000 1001 0.186630 TCCCCCGTATTCGATCTCCA 59.813 55.000 0.00 0.00 39.71 3.86
1001 1002 1.203137 TCCCCCGTATTCGATCTCCAT 60.203 52.381 0.00 0.00 39.71 3.41
1002 1003 1.066858 CCCCCGTATTCGATCTCCATG 60.067 57.143 0.00 0.00 39.71 3.66
1004 1005 1.066858 CCCGTATTCGATCTCCATGGG 60.067 57.143 13.02 2.57 39.71 4.00
1005 1006 1.066858 CCGTATTCGATCTCCATGGGG 60.067 57.143 13.02 9.18 39.71 4.96
1006 1007 1.893137 CGTATTCGATCTCCATGGGGA 59.107 52.381 18.95 18.95 39.20 4.81
1007 1008 2.352814 CGTATTCGATCTCCATGGGGAC 60.353 54.545 19.06 10.27 37.50 4.46
1008 1009 2.109229 ATTCGATCTCCATGGGGACT 57.891 50.000 19.06 6.34 38.64 3.85
1009 1010 1.123077 TTCGATCTCCATGGGGACTG 58.877 55.000 19.06 12.79 38.64 3.51
1010 1011 0.760567 TCGATCTCCATGGGGACTGG 60.761 60.000 19.06 9.35 38.64 4.00
1011 1012 1.453669 GATCTCCATGGGGACTGGC 59.546 63.158 19.06 2.93 38.64 4.85
1012 1013 1.005289 ATCTCCATGGGGACTGGCT 59.995 57.895 19.06 0.00 38.64 4.75
1026 1027 2.047179 GGCTTGTCCCAGTCCGAC 60.047 66.667 0.00 0.00 0.00 4.79
1093 1094 5.593909 GGTCAATCCACCATAATCAACATGA 59.406 40.000 0.00 0.00 36.32 3.07
1105 1106 1.018752 CAACATGATGCGGTCCGTGA 61.019 55.000 13.94 0.00 0.00 4.35
1142 1143 4.221422 GGCGGTAGCGCATCTGGA 62.221 66.667 36.52 0.00 46.35 3.86
1200 1201 4.643387 GCCCTCACCACCGTGCTT 62.643 66.667 0.00 0.00 40.04 3.91
1232 1233 4.796231 CGGACCTGTCTTCGCCCG 62.796 72.222 0.00 0.00 0.00 6.13
1278 1279 2.289444 CCTTGCCTTTGTCCTCTTCGTA 60.289 50.000 0.00 0.00 0.00 3.43
1281 1282 2.007547 GCCTTTGTCCTCTTCGTAGCC 61.008 57.143 0.00 0.00 0.00 3.93
1376 1387 1.805539 CTGCGCTTACGTGCTGCTA 60.806 57.895 9.73 0.00 46.58 3.49
1406 1417 2.203611 TCCGTGGGTGGGTTCGTA 60.204 61.111 0.00 0.00 0.00 3.43
1453 1595 1.880027 GTACTGCAGGGTTCCTTTGTG 59.120 52.381 19.93 0.00 0.00 3.33
1469 1611 4.207019 CCTTTGTGTTCTGTCAAAATTCGC 59.793 41.667 0.00 0.00 33.99 4.70
1484 1639 3.720193 CGCTGGTGCTGTCAGTGC 61.720 66.667 0.93 0.00 36.21 4.40
1491 1646 2.831526 TGGTGCTGTCAGTGCTTATCTA 59.168 45.455 0.93 0.00 0.00 1.98
1518 1724 6.254281 AGTTATTTCTTGGTACATGTGCAC 57.746 37.500 16.11 10.75 39.30 4.57
1537 1747 5.578727 GTGCACTAGATAGGTTCTGTTTCTG 59.421 44.000 10.32 0.00 35.79 3.02
1550 1859 5.407407 TCTGTTTCTGGATACTCTGGAAC 57.593 43.478 0.00 0.00 37.61 3.62
1551 1860 5.087323 TCTGTTTCTGGATACTCTGGAACT 58.913 41.667 0.00 0.00 37.61 3.01
1552 1861 5.047021 TCTGTTTCTGGATACTCTGGAACTG 60.047 44.000 0.00 0.00 37.61 3.16
1553 1862 4.020218 TGTTTCTGGATACTCTGGAACTGG 60.020 45.833 0.00 0.00 37.61 4.00
1554 1863 2.752030 TCTGGATACTCTGGAACTGGG 58.248 52.381 0.00 0.00 37.61 4.45
1555 1864 2.314852 TCTGGATACTCTGGAACTGGGA 59.685 50.000 0.00 0.00 37.61 4.37
1618 2003 1.204704 TGTCCTCGATCTGCAAACGAT 59.795 47.619 9.31 0.00 35.58 3.73
1625 2010 4.744570 TCGATCTGCAAACGATTAAGTCT 58.255 39.130 5.64 0.00 0.00 3.24
1675 2060 5.279206 CCATATATGCACTCTTCTTCCTCGT 60.279 44.000 7.24 0.00 0.00 4.18
1677 2062 7.363355 CCATATATGCACTCTTCTTCCTCGTAT 60.363 40.741 7.24 0.00 0.00 3.06
1678 2063 3.784701 TGCACTCTTCTTCCTCGTATC 57.215 47.619 0.00 0.00 0.00 2.24
1681 2066 2.097629 CACTCTTCTTCCTCGTATCGCA 59.902 50.000 0.00 0.00 0.00 5.10
1682 2067 2.952978 ACTCTTCTTCCTCGTATCGCAT 59.047 45.455 0.00 0.00 0.00 4.73
1683 2068 3.003897 ACTCTTCTTCCTCGTATCGCATC 59.996 47.826 0.00 0.00 0.00 3.91
1687 2072 3.418047 TCTTCCTCGTATCGCATCCATA 58.582 45.455 0.00 0.00 0.00 2.74
1688 2073 3.190744 TCTTCCTCGTATCGCATCCATAC 59.809 47.826 0.00 0.00 0.00 2.39
1711 2097 0.319211 ACGAGGATGCGTTTGTCGAA 60.319 50.000 11.19 0.00 42.71 3.71
1737 2123 2.574006 TTCATGTCTGGCTCTGCTTT 57.426 45.000 0.00 0.00 0.00 3.51
1739 2125 0.170561 CATGTCTGGCTCTGCTTTGC 59.829 55.000 0.00 0.00 0.00 3.68
1769 2155 6.197096 GTGTAATTTTTGTGTGAACTGAGCAG 59.803 38.462 0.00 0.00 0.00 4.24
1770 2156 3.781079 TTTTTGTGTGAACTGAGCAGG 57.219 42.857 2.20 0.00 0.00 4.85
1790 2219 4.938226 CAGGCCTTAGTCTTAAGAAACAGG 59.062 45.833 0.00 12.78 38.88 4.00
1826 2255 9.573133 GTATGCTTGCTTATTAGTGTTTGAATT 57.427 29.630 0.00 0.00 0.00 2.17
1833 2262 8.081633 TGCTTATTAGTGTTTGAATTGGAAGTG 58.918 33.333 0.00 0.00 0.00 3.16
1838 2268 5.846203 AGTGTTTGAATTGGAAGTGGAATG 58.154 37.500 0.00 0.00 0.00 2.67
1863 2293 2.552743 GGGCACAAGTTAGGTTGACTTC 59.447 50.000 0.00 0.00 35.26 3.01
1899 2329 7.169645 AGCTTCGTTTTGAGTACATACGTTTTA 59.830 33.333 0.00 0.00 36.52 1.52
2004 2462 3.503365 ACAACTACACAGTAGCCTGGTA 58.497 45.455 4.20 0.00 43.36 3.25
2009 2467 2.266279 ACACAGTAGCCTGGTATTGGT 58.734 47.619 0.00 0.00 43.36 3.67
2018 2476 4.019174 AGCCTGGTATTGGTTTCAGATTG 58.981 43.478 0.00 0.00 0.00 2.67
2019 2477 3.763897 GCCTGGTATTGGTTTCAGATTGT 59.236 43.478 0.00 0.00 0.00 2.71
2020 2478 4.220602 GCCTGGTATTGGTTTCAGATTGTT 59.779 41.667 0.00 0.00 0.00 2.83
2021 2479 5.279456 GCCTGGTATTGGTTTCAGATTGTTT 60.279 40.000 0.00 0.00 0.00 2.83
2022 2480 6.741240 GCCTGGTATTGGTTTCAGATTGTTTT 60.741 38.462 0.00 0.00 0.00 2.43
2023 2481 6.646240 CCTGGTATTGGTTTCAGATTGTTTTG 59.354 38.462 0.00 0.00 0.00 2.44
2025 2483 5.931724 GGTATTGGTTTCAGATTGTTTTGGG 59.068 40.000 0.00 0.00 0.00 4.12
2026 2484 5.628797 ATTGGTTTCAGATTGTTTTGGGT 57.371 34.783 0.00 0.00 0.00 4.51
2028 2486 3.130633 GGTTTCAGATTGTTTTGGGTGC 58.869 45.455 0.00 0.00 0.00 5.01
2029 2487 3.431486 GGTTTCAGATTGTTTTGGGTGCA 60.431 43.478 0.00 0.00 0.00 4.57
2032 2490 3.229293 TCAGATTGTTTTGGGTGCATCA 58.771 40.909 0.00 0.00 0.00 3.07
2033 2491 3.640498 TCAGATTGTTTTGGGTGCATCAA 59.360 39.130 0.00 0.00 0.00 2.57
2034 2492 4.283978 TCAGATTGTTTTGGGTGCATCAAT 59.716 37.500 0.00 0.00 0.00 2.57
2035 2493 4.998672 CAGATTGTTTTGGGTGCATCAATT 59.001 37.500 0.00 0.00 0.00 2.32
2036 2494 4.998672 AGATTGTTTTGGGTGCATCAATTG 59.001 37.500 0.00 0.00 0.00 2.32
2037 2495 3.123157 TGTTTTGGGTGCATCAATTGG 57.877 42.857 5.42 0.00 0.00 3.16
2038 2496 1.805943 GTTTTGGGTGCATCAATTGGC 59.194 47.619 5.42 2.50 0.00 4.52
2039 2497 0.324285 TTTGGGTGCATCAATTGGCC 59.676 50.000 5.42 0.00 0.00 5.36
2040 2498 0.544833 TTGGGTGCATCAATTGGCCT 60.545 50.000 3.32 0.00 0.00 5.19
2042 2500 1.259840 GGGTGCATCAATTGGCCTGT 61.260 55.000 3.32 0.00 0.00 4.00
2043 2501 0.609662 GGTGCATCAATTGGCCTGTT 59.390 50.000 3.32 0.00 0.00 3.16
2044 2502 1.824230 GGTGCATCAATTGGCCTGTTA 59.176 47.619 3.32 0.00 0.00 2.41
2045 2503 2.431782 GGTGCATCAATTGGCCTGTTAT 59.568 45.455 3.32 0.00 0.00 1.89
2046 2504 3.118665 GGTGCATCAATTGGCCTGTTATT 60.119 43.478 3.32 0.00 0.00 1.40
2047 2505 3.866910 GTGCATCAATTGGCCTGTTATTG 59.133 43.478 3.32 9.00 0.00 1.90
2049 2507 4.222366 TGCATCAATTGGCCTGTTATTGAA 59.778 37.500 19.55 7.66 40.49 2.69
2050 2508 5.104859 TGCATCAATTGGCCTGTTATTGAAT 60.105 36.000 19.55 10.61 40.49 2.57
2051 2509 5.818857 GCATCAATTGGCCTGTTATTGAATT 59.181 36.000 19.55 7.23 40.49 2.17
2053 2511 6.602410 TCAATTGGCCTGTTATTGAATTCA 57.398 33.333 3.38 3.38 35.86 2.57
2087 2545 5.454062 ACTGCATTAATTGGCCTGGTATTA 58.546 37.500 3.32 0.25 0.00 0.98
2107 2565 8.616076 GGTATTAGATTCAGATTGTTTGGAGTG 58.384 37.037 0.00 0.00 0.00 3.51
2264 5073 6.623486 TCTTATGCATGTGAATTTTGACCTG 58.377 36.000 10.16 0.00 0.00 4.00
2293 5120 1.640428 TAGTAACGCTGCTCATGTGC 58.360 50.000 12.78 12.78 0.00 4.57
2399 5243 1.237285 ATGGAACTGACGTGCTTGCC 61.237 55.000 0.00 0.00 0.00 4.52
2406 5250 1.008538 GACGTGCTTGCCCTGTTTG 60.009 57.895 0.00 0.00 0.00 2.93
2448 5300 6.360370 TCTTGGAAGTTAGTCTTGTAGCAT 57.640 37.500 0.00 0.00 36.40 3.79
2491 5352 3.486383 CCAGTGGTTATGGTGTCTTTGT 58.514 45.455 0.00 0.00 32.85 2.83
2584 5460 6.272090 TGCCCAGTCTTTATATATGATGTGGA 59.728 38.462 13.45 0.00 0.00 4.02
2589 5465 9.636879 CAGTCTTTATATATGATGTGGACAGAG 57.363 37.037 0.00 0.00 0.00 3.35
2623 5499 9.638176 AATTCTGTGATATCCTTGCTTCTTTAT 57.362 29.630 0.00 0.00 0.00 1.40
2711 5813 4.159693 AGAACCAAAGAAAAACAGTGGTCC 59.840 41.667 0.00 0.00 41.74 4.46
2723 5825 0.117140 AGTGGTCCCTGAGGATGACA 59.883 55.000 0.00 0.00 46.41 3.58
2726 5828 0.471617 GGTCCCTGAGGATGACATGG 59.528 60.000 0.00 0.00 46.41 3.66
2729 5831 2.441001 GTCCCTGAGGATGACATGGAAT 59.559 50.000 0.00 0.00 46.41 3.01
2731 5833 3.074258 CCCTGAGGATGACATGGAATGC 61.074 54.545 0.00 0.00 42.14 3.56
2750 5852 5.643379 ATGCGGAATAATTGTGTTTGTCT 57.357 34.783 0.00 0.00 0.00 3.41
2757 5859 7.425606 GGAATAATTGTGTTTGTCTGACAAGT 58.574 34.615 21.13 3.51 39.53 3.16
2758 5860 7.379529 GGAATAATTGTGTTTGTCTGACAAGTG 59.620 37.037 21.13 0.00 39.53 3.16
2766 5868 5.647658 TGTTTGTCTGACAAGTGACTGAATT 59.352 36.000 21.13 0.00 39.53 2.17
2768 5870 4.129380 TGTCTGACAAGTGACTGAATTGG 58.871 43.478 8.27 0.00 34.57 3.16
2770 5872 4.816385 GTCTGACAAGTGACTGAATTGGAA 59.184 41.667 2.24 0.00 0.00 3.53
2781 5883 3.826729 ACTGAATTGGAACCAAGCCTAAC 59.173 43.478 11.88 1.53 39.47 2.34
2836 5938 7.173218 CCACATGTTACATTCTAAGTGAACTGT 59.827 37.037 12.39 0.00 37.52 3.55
2837 5939 8.011673 CACATGTTACATTCTAAGTGAACTGTG 58.988 37.037 0.00 0.89 37.52 3.66
2839 5941 7.477144 TGTTACATTCTAAGTGAACTGTGTG 57.523 36.000 0.00 0.00 37.52 3.82
2848 5950 3.169099 AGTGAACTGTGTGCCTCTATCT 58.831 45.455 0.00 0.00 0.00 1.98
2851 5953 3.131223 TGAACTGTGTGCCTCTATCTAGC 59.869 47.826 0.00 0.00 0.00 3.42
2855 5957 3.223435 TGTGTGCCTCTATCTAGCTACC 58.777 50.000 0.00 0.00 0.00 3.18
2867 5969 0.752743 TAGCTACCGGGTATGCGTGT 60.753 55.000 6.32 1.65 0.00 4.49
2868 5970 1.590792 GCTACCGGGTATGCGTGTC 60.591 63.158 6.32 0.00 0.00 3.67
2874 5976 1.202604 CCGGGTATGCGTGTCCTTTAT 60.203 52.381 0.00 0.00 0.00 1.40
2884 5986 6.320494 TGCGTGTCCTTTATATTTTGTTGT 57.680 33.333 0.00 0.00 0.00 3.32
2913 6015 6.474751 GCTGATACTTCATCAAGAAAAATGCC 59.525 38.462 0.00 0.00 43.15 4.40
2927 6029 2.885135 AATGCCAATCCACTGAGTGA 57.115 45.000 15.33 0.37 38.86 3.41
2944 6046 5.245531 TGAGTGATAAACTGCGGAAGAAAT 58.754 37.500 0.00 0.00 40.07 2.17
2945 6047 5.351465 TGAGTGATAAACTGCGGAAGAAATC 59.649 40.000 0.00 0.00 40.07 2.17
2946 6048 5.245531 AGTGATAAACTGCGGAAGAAATCA 58.754 37.500 0.00 0.00 37.88 2.57
2949 6051 2.927553 AACTGCGGAAGAAATCATGC 57.072 45.000 0.00 0.00 0.00 4.06
2988 6092 3.242011 AGGATGCCAAGGATTTTGTTGT 58.758 40.909 0.00 0.00 0.00 3.32
2989 6093 3.007182 AGGATGCCAAGGATTTTGTTGTG 59.993 43.478 0.00 0.00 0.00 3.33
3017 6121 7.891183 ATTGTAGACTTGTAGTGACATTGTC 57.109 36.000 9.93 9.93 38.57 3.18
3118 6222 8.417273 AAATAGTAGCACCCTGTTGTTAAATT 57.583 30.769 0.00 0.00 0.00 1.82
3123 6227 6.909550 AGCACCCTGTTGTTAAATTTGATA 57.090 33.333 0.00 0.00 0.00 2.15
3124 6228 7.480760 AGCACCCTGTTGTTAAATTTGATAT 57.519 32.000 0.00 0.00 0.00 1.63
3125 6230 7.322664 AGCACCCTGTTGTTAAATTTGATATG 58.677 34.615 0.00 0.00 0.00 1.78
3126 6231 7.039082 AGCACCCTGTTGTTAAATTTGATATGT 60.039 33.333 0.00 0.00 0.00 2.29
3149 6280 7.189693 GTCATTCTGACTGTCATTACACAAA 57.810 36.000 11.45 0.00 43.73 2.83
3154 6285 5.527214 TCTGACTGTCATTACACAAACCTTG 59.473 40.000 11.45 0.00 0.00 3.61
3165 6296 9.912634 CATTACACAAACCTTGTATTCTGAATT 57.087 29.630 8.38 0.00 43.23 2.17
3167 6298 6.215845 ACACAAACCTTGTATTCTGAATTGC 58.784 36.000 8.38 3.30 43.23 3.56
3168 6299 6.040842 ACACAAACCTTGTATTCTGAATTGCT 59.959 34.615 8.38 0.00 43.23 3.91
3173 6304 6.476378 ACCTTGTATTCTGAATTGCTAGTGT 58.524 36.000 8.38 6.40 0.00 3.55
3175 6306 6.037610 CCTTGTATTCTGAATTGCTAGTGTCC 59.962 42.308 8.38 0.00 0.00 4.02
3178 6309 4.890158 TTCTGAATTGCTAGTGTCCTCA 57.110 40.909 0.00 0.00 0.00 3.86
3186 6317 1.202510 GCTAGTGTCCTCATCTGCAGG 60.203 57.143 15.13 0.00 0.00 4.85
3187 6318 2.106566 CTAGTGTCCTCATCTGCAGGT 58.893 52.381 15.13 2.68 32.20 4.00
3195 6326 1.153489 CATCTGCAGGTGTCTCCCG 60.153 63.158 19.29 0.00 36.75 5.14
3196 6327 2.362369 ATCTGCAGGTGTCTCCCGG 61.362 63.158 15.13 0.00 36.75 5.73
3201 6332 0.179081 GCAGGTGTCTCCCGGAATAC 60.179 60.000 0.73 0.00 36.75 1.89
3268 6399 2.859992 GCACTCTTGCTTACTGGGG 58.140 57.895 0.00 0.00 46.17 4.96
3269 6400 1.308783 GCACTCTTGCTTACTGGGGC 61.309 60.000 0.00 0.00 46.17 5.80
3270 6401 0.678048 CACTCTTGCTTACTGGGGCC 60.678 60.000 0.00 0.00 0.00 5.80
3271 6402 1.133809 ACTCTTGCTTACTGGGGCCA 61.134 55.000 4.39 0.00 0.00 5.36
3272 6403 0.678048 CTCTTGCTTACTGGGGCCAC 60.678 60.000 4.39 0.00 0.00 5.01
3273 6404 1.074775 CTTGCTTACTGGGGCCACA 59.925 57.895 7.89 7.89 0.00 4.17
3274 6405 0.539438 CTTGCTTACTGGGGCCACAA 60.539 55.000 10.16 0.00 0.00 3.33
3275 6406 0.114168 TTGCTTACTGGGGCCACAAT 59.886 50.000 10.16 0.00 0.00 2.71
3276 6407 0.114168 TGCTTACTGGGGCCACAATT 59.886 50.000 10.16 0.43 0.00 2.32
3277 6408 1.266178 GCTTACTGGGGCCACAATTT 58.734 50.000 10.16 0.00 0.00 1.82
3278 6409 1.623311 GCTTACTGGGGCCACAATTTT 59.377 47.619 10.16 0.00 0.00 1.82
3281 6412 2.028561 ACTGGGGCCACAATTTTCAT 57.971 45.000 10.16 0.00 0.00 2.57
3292 6423 4.562082 CACAATTTTCATGTGGTCTGCAT 58.438 39.130 0.00 0.00 43.45 3.96
3294 6425 3.770263 ATTTTCATGTGGTCTGCATCG 57.230 42.857 0.00 0.00 0.00 3.84
3304 6435 0.734253 GTCTGCATCGACGTCTTGCT 60.734 55.000 28.88 6.17 37.28 3.91
3309 6440 1.702886 CATCGACGTCTTGCTGAAGT 58.297 50.000 14.70 0.00 39.98 3.01
3325 6456 3.686916 GAAGTAGCACCCAACTTCTCT 57.313 47.619 7.73 0.00 45.26 3.10
3326 6457 3.330267 GAAGTAGCACCCAACTTCTCTG 58.670 50.000 7.73 0.00 45.26 3.35
3327 6458 2.609747 AGTAGCACCCAACTTCTCTGA 58.390 47.619 0.00 0.00 0.00 3.27
3328 6459 3.177228 AGTAGCACCCAACTTCTCTGAT 58.823 45.455 0.00 0.00 0.00 2.90
3329 6460 2.777832 AGCACCCAACTTCTCTGATC 57.222 50.000 0.00 0.00 0.00 2.92
3330 6461 1.066573 AGCACCCAACTTCTCTGATCG 60.067 52.381 0.00 0.00 0.00 3.69
3331 6462 2.009042 GCACCCAACTTCTCTGATCGG 61.009 57.143 0.00 0.00 0.00 4.18
3332 6463 0.250513 ACCCAACTTCTCTGATCGGC 59.749 55.000 0.00 0.00 0.00 5.54
3333 6464 0.539051 CCCAACTTCTCTGATCGGCT 59.461 55.000 0.00 0.00 0.00 5.52
3334 6465 1.065854 CCCAACTTCTCTGATCGGCTT 60.066 52.381 0.00 0.00 0.00 4.35
3335 6466 2.275318 CCAACTTCTCTGATCGGCTTC 58.725 52.381 0.00 0.00 0.00 3.86
3336 6467 2.275318 CAACTTCTCTGATCGGCTTCC 58.725 52.381 0.00 0.00 0.00 3.46
3337 6468 1.561643 ACTTCTCTGATCGGCTTCCA 58.438 50.000 0.00 0.00 0.00 3.53
3338 6469 1.480137 ACTTCTCTGATCGGCTTCCAG 59.520 52.381 0.00 0.00 0.00 3.86
3339 6470 1.480137 CTTCTCTGATCGGCTTCCAGT 59.520 52.381 0.00 0.00 0.00 4.00
3340 6471 1.561643 TCTCTGATCGGCTTCCAGTT 58.438 50.000 0.00 0.00 0.00 3.16
3342 6473 0.173481 TCTGATCGGCTTCCAGTTCG 59.827 55.000 0.00 0.00 0.00 3.95
3349 6480 1.021920 GGCTTCCAGTTCGGCTTCTC 61.022 60.000 0.00 0.00 33.14 2.87
3355 6486 0.671781 CAGTTCGGCTTCTCCCACAG 60.672 60.000 0.00 0.00 0.00 3.66
3356 6487 2.035442 GTTCGGCTTCTCCCACAGC 61.035 63.158 0.00 0.00 35.07 4.40
3357 6488 2.515979 TTCGGCTTCTCCCACAGCA 61.516 57.895 0.00 0.00 37.81 4.41
3358 6489 2.731691 TTCGGCTTCTCCCACAGCAC 62.732 60.000 0.00 0.00 37.81 4.40
3359 6490 2.431683 GGCTTCTCCCACAGCACA 59.568 61.111 0.00 0.00 37.81 4.57
3360 6491 1.673665 GGCTTCTCCCACAGCACAG 60.674 63.158 0.00 0.00 37.81 3.66
3362 6493 0.321671 GCTTCTCCCACAGCACAGTA 59.678 55.000 0.00 0.00 35.95 2.74
3371 6502 2.417924 CCACAGCACAGTACAGATCCTC 60.418 54.545 0.00 0.00 0.00 3.71
3372 6503 2.495270 CACAGCACAGTACAGATCCTCT 59.505 50.000 0.00 0.00 0.00 3.69
3383 6514 2.607499 CAGATCCTCTGGTAGCTGGAT 58.393 52.381 12.17 12.17 40.71 3.41
3384 6515 2.299582 CAGATCCTCTGGTAGCTGGATG 59.700 54.545 15.57 4.72 40.71 3.51
3385 6516 2.178764 AGATCCTCTGGTAGCTGGATGA 59.821 50.000 15.57 7.36 39.19 2.92
3387 6518 1.570979 TCCTCTGGTAGCTGGATGAGA 59.429 52.381 0.00 0.00 0.00 3.27
3388 6519 1.686052 CCTCTGGTAGCTGGATGAGAC 59.314 57.143 0.00 0.00 0.00 3.36
3390 6521 0.755686 CTGGTAGCTGGATGAGACCC 59.244 60.000 0.00 0.00 0.00 4.46
3391 6522 0.339859 TGGTAGCTGGATGAGACCCT 59.660 55.000 0.00 0.00 0.00 4.34
3393 6524 0.671251 GTAGCTGGATGAGACCCTCG 59.329 60.000 0.00 0.00 32.35 4.63
3394 6525 0.551396 TAGCTGGATGAGACCCTCGA 59.449 55.000 0.00 0.00 32.35 4.04
3395 6526 1.040339 AGCTGGATGAGACCCTCGAC 61.040 60.000 0.00 0.00 32.35 4.20
3396 6527 1.730487 CTGGATGAGACCCTCGACG 59.270 63.158 0.00 0.00 32.35 5.12
3397 6528 1.001269 TGGATGAGACCCTCGACGT 60.001 57.895 0.00 0.00 32.35 4.34
3398 6529 1.313091 TGGATGAGACCCTCGACGTG 61.313 60.000 0.00 0.00 32.35 4.49
3399 6530 1.226717 GATGAGACCCTCGACGTGC 60.227 63.158 0.00 0.00 32.35 5.34
3400 6531 1.658686 GATGAGACCCTCGACGTGCT 61.659 60.000 0.00 0.00 32.35 4.40
3401 6532 1.658686 ATGAGACCCTCGACGTGCTC 61.659 60.000 0.00 0.00 32.35 4.26
3402 6533 3.384014 GAGACCCTCGACGTGCTCG 62.384 68.421 6.63 6.63 44.44 5.03
3406 6537 4.717629 CCTCGACGTGCTCGCCAA 62.718 66.667 8.29 0.00 42.62 4.52
3407 6538 3.470567 CTCGACGTGCTCGCCAAC 61.471 66.667 8.29 0.00 42.62 3.77
3421 6552 4.722700 CAACGAGGGCCCCACCAG 62.723 72.222 21.43 8.17 42.05 4.00
3434 6565 2.208349 ACCAGGGGCTCAAGAGGT 59.792 61.111 0.00 0.00 0.00 3.85
3435 6566 0.909610 CACCAGGGGCTCAAGAGGTA 60.910 60.000 0.00 0.00 0.00 3.08
3452 6583 3.562681 TACTCCAGCCAGCCCACCT 62.563 63.158 0.00 0.00 0.00 4.00
3453 6584 2.176202 TACTCCAGCCAGCCCACCTA 62.176 60.000 0.00 0.00 0.00 3.08
3454 6585 2.204074 TCCAGCCAGCCCACCTAA 60.204 61.111 0.00 0.00 0.00 2.69
3456 6587 2.606587 CCAGCCAGCCCACCTAACT 61.607 63.158 0.00 0.00 0.00 2.24
3462 6593 2.227036 AGCCCACCTAACTGCAGCT 61.227 57.895 15.27 3.62 0.00 4.24
3472 6603 3.868077 CCTAACTGCAGCTCTACATTGAC 59.132 47.826 15.27 0.00 0.00 3.18
3490 6621 2.815647 GGCGAGTTCTTCAGCGGG 60.816 66.667 0.00 0.00 0.00 6.13
3493 6624 2.383527 CGAGTTCTTCAGCGGGTGC 61.384 63.158 1.51 0.00 43.24 5.01
3494 6625 1.301716 GAGTTCTTCAGCGGGTGCA 60.302 57.895 1.51 0.00 46.23 4.57
3496 6627 0.250901 AGTTCTTCAGCGGGTGCAAT 60.251 50.000 1.51 0.00 46.23 3.56
3497 6628 0.109597 GTTCTTCAGCGGGTGCAATG 60.110 55.000 1.51 0.00 46.23 2.82
3499 6630 0.323302 TCTTCAGCGGGTGCAATGTA 59.677 50.000 1.51 0.00 46.23 2.29
3500 6631 0.447801 CTTCAGCGGGTGCAATGTAC 59.552 55.000 1.51 0.00 46.23 2.90
3501 6632 0.250510 TTCAGCGGGTGCAATGTACA 60.251 50.000 3.55 0.00 46.23 2.90
3502 6633 0.250510 TCAGCGGGTGCAATGTACAA 60.251 50.000 0.00 0.00 46.23 2.41
3503 6634 0.109781 CAGCGGGTGCAATGTACAAC 60.110 55.000 0.00 0.00 46.23 3.32
3504 6635 0.536233 AGCGGGTGCAATGTACAACA 60.536 50.000 0.00 0.00 46.23 3.33
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
56 57 7.237209 AGTAGGTTATACTTCGGTGTCTTTT 57.763 36.000 0.00 0.00 0.00 2.27
432 433 3.730715 GCAAATTATACGCATGCAAGGAC 59.269 43.478 19.57 0.00 37.00 3.85
766 767 2.676342 GTTCCCTTACATAAGTGCCACG 59.324 50.000 0.00 0.00 0.00 4.94
769 770 1.669265 GCGTTCCCTTACATAAGTGCC 59.331 52.381 0.00 0.00 0.00 5.01
770 771 1.326548 CGCGTTCCCTTACATAAGTGC 59.673 52.381 0.00 0.00 0.00 4.40
771 772 2.347452 CACGCGTTCCCTTACATAAGTG 59.653 50.000 10.22 0.00 0.00 3.16
772 773 2.613691 CACGCGTTCCCTTACATAAGT 58.386 47.619 10.22 0.00 0.00 2.24
773 774 1.931172 CCACGCGTTCCCTTACATAAG 59.069 52.381 10.22 0.00 0.00 1.73
774 775 1.549620 TCCACGCGTTCCCTTACATAA 59.450 47.619 10.22 0.00 0.00 1.90
775 776 1.135024 GTCCACGCGTTCCCTTACATA 60.135 52.381 10.22 0.00 0.00 2.29
776 777 0.390735 GTCCACGCGTTCCCTTACAT 60.391 55.000 10.22 0.00 0.00 2.29
777 778 1.005867 GTCCACGCGTTCCCTTACA 60.006 57.895 10.22 0.00 0.00 2.41
778 779 0.320160 AAGTCCACGCGTTCCCTTAC 60.320 55.000 10.22 1.37 0.00 2.34
781 782 0.464916 AAAAAGTCCACGCGTTCCCT 60.465 50.000 10.22 1.51 0.00 4.20
782 783 2.027325 AAAAAGTCCACGCGTTCCC 58.973 52.632 10.22 0.00 0.00 3.97
798 799 2.305927 TGGAAAACCTTTGGTGGCAAAA 59.694 40.909 0.00 0.00 35.34 2.44
800 801 1.573108 TGGAAAACCTTTGGTGGCAA 58.427 45.000 0.00 0.00 35.34 4.52
802 803 1.810031 GCTTGGAAAACCTTTGGTGGC 60.810 52.381 0.00 0.00 35.34 5.01
804 805 1.484240 TGGCTTGGAAAACCTTTGGTG 59.516 47.619 0.00 0.00 35.34 4.17
805 806 1.872773 TGGCTTGGAAAACCTTTGGT 58.127 45.000 0.00 0.00 37.65 3.67
807 808 3.003585 GCATTTGGCTTGGAAAACCTTTG 59.996 43.478 0.00 0.00 40.25 2.77
808 809 3.213506 GCATTTGGCTTGGAAAACCTTT 58.786 40.909 0.00 0.00 40.25 3.11
809 810 2.487086 GGCATTTGGCTTGGAAAACCTT 60.487 45.455 0.00 0.00 44.01 3.50
812 813 1.147473 CGGCATTTGGCTTGGAAAAC 58.853 50.000 2.49 0.00 44.01 2.43
814 815 0.602562 CTCGGCATTTGGCTTGGAAA 59.397 50.000 2.49 0.00 44.01 3.13
816 817 0.326595 TACTCGGCATTTGGCTTGGA 59.673 50.000 2.49 0.00 44.01 3.53
817 818 0.734889 CTACTCGGCATTTGGCTTGG 59.265 55.000 2.49 0.00 44.01 3.61
820 821 3.560636 AATACTACTCGGCATTTGGCT 57.439 42.857 2.49 0.00 44.01 4.75
821 822 5.941948 ATAAATACTACTCGGCATTTGGC 57.058 39.130 0.00 0.00 43.74 4.52
822 823 6.142817 GCAATAAATACTACTCGGCATTTGG 58.857 40.000 0.00 0.00 0.00 3.28
823 824 6.142817 GGCAATAAATACTACTCGGCATTTG 58.857 40.000 0.00 0.00 0.00 2.32
825 826 4.760204 GGGCAATAAATACTACTCGGCATT 59.240 41.667 0.00 0.00 0.00 3.56
830 831 2.735134 GCCGGGCAATAAATACTACTCG 59.265 50.000 15.62 0.00 0.00 4.18
832 833 2.366266 TCGCCGGGCAATAAATACTACT 59.634 45.455 20.71 0.00 0.00 2.57
834 835 2.289195 CCTCGCCGGGCAATAAATACTA 60.289 50.000 20.71 0.00 0.00 1.82
836 837 0.872388 CCTCGCCGGGCAATAAATAC 59.128 55.000 20.71 0.00 0.00 1.89
837 838 0.470766 ACCTCGCCGGGCAATAAATA 59.529 50.000 20.71 0.00 36.97 1.40
839 840 1.747367 CACCTCGCCGGGCAATAAA 60.747 57.895 20.71 0.00 36.97 1.40
840 841 2.124901 CACCTCGCCGGGCAATAA 60.125 61.111 20.71 0.00 36.97 1.40
842 843 4.778143 GTCACCTCGCCGGGCAAT 62.778 66.667 20.71 0.00 36.97 3.56
846 847 2.521958 AAATCAGTCACCTCGCCGGG 62.522 60.000 2.18 0.00 36.97 5.73
847 848 0.673644 AAAATCAGTCACCTCGCCGG 60.674 55.000 0.00 0.00 39.35 6.13
848 849 0.443869 CAAAATCAGTCACCTCGCCG 59.556 55.000 0.00 0.00 0.00 6.46
849 850 0.169009 GCAAAATCAGTCACCTCGCC 59.831 55.000 0.00 0.00 0.00 5.54
850 851 0.169009 GGCAAAATCAGTCACCTCGC 59.831 55.000 0.00 0.00 0.00 5.03
851 852 0.804989 GGGCAAAATCAGTCACCTCG 59.195 55.000 0.00 0.00 0.00 4.63
852 853 0.804989 CGGGCAAAATCAGTCACCTC 59.195 55.000 0.00 0.00 0.00 3.85
853 854 1.244019 GCGGGCAAAATCAGTCACCT 61.244 55.000 0.00 0.00 0.00 4.00
854 855 1.212751 GCGGGCAAAATCAGTCACC 59.787 57.895 0.00 0.00 0.00 4.02
855 856 1.154225 CGCGGGCAAAATCAGTCAC 60.154 57.895 0.00 0.00 0.00 3.67
857 858 2.202479 GCGCGGGCAAAATCAGTC 60.202 61.111 20.76 0.00 39.62 3.51
858 859 2.672996 AGCGCGGGCAAAATCAGT 60.673 55.556 27.20 0.00 43.41 3.41
859 860 2.100991 GAGCGCGGGCAAAATCAG 59.899 61.111 27.20 0.00 43.41 2.90
861 862 2.109126 AGAGAGCGCGGGCAAAATC 61.109 57.895 27.20 14.90 43.41 2.17
862 863 2.045926 AGAGAGCGCGGGCAAAAT 60.046 55.556 27.20 5.29 43.41 1.82
863 864 2.443260 TACAGAGAGCGCGGGCAAAA 62.443 55.000 27.20 1.49 43.41 2.44
864 865 2.938086 TACAGAGAGCGCGGGCAAA 61.938 57.895 27.20 0.39 43.41 3.68
865 866 3.378602 TACAGAGAGCGCGGGCAA 61.379 61.111 27.20 0.00 43.41 4.52
866 867 4.129737 GTACAGAGAGCGCGGGCA 62.130 66.667 27.20 0.00 43.41 5.36
867 868 4.874977 GGTACAGAGAGCGCGGGC 62.875 72.222 17.92 17.92 40.37 6.13
868 869 3.127352 GAGGTACAGAGAGCGCGGG 62.127 68.421 8.83 0.00 0.00 6.13
869 870 2.409651 GAGGTACAGAGAGCGCGG 59.590 66.667 8.83 0.00 0.00 6.46
872 873 1.353804 GAGCGAGGTACAGAGAGCG 59.646 63.158 0.00 0.00 0.00 5.03
878 879 1.139095 GGAACGGAGCGAGGTACAG 59.861 63.158 0.00 0.00 0.00 2.74
879 880 1.604308 TGGAACGGAGCGAGGTACA 60.604 57.895 0.00 0.00 0.00 2.90
880 881 1.153881 GTGGAACGGAGCGAGGTAC 60.154 63.158 0.00 0.00 0.00 3.34
881 882 2.345760 GGTGGAACGGAGCGAGGTA 61.346 63.158 0.00 0.00 38.12 3.08
882 883 3.692406 GGTGGAACGGAGCGAGGT 61.692 66.667 0.00 0.00 38.12 3.85
883 884 3.234630 TTGGTGGAACGGAGCGAGG 62.235 63.158 0.00 0.00 38.12 4.63
884 885 1.738099 CTTGGTGGAACGGAGCGAG 60.738 63.158 0.00 0.00 38.12 5.03
886 887 1.738099 CTCTTGGTGGAACGGAGCG 60.738 63.158 0.00 0.00 38.12 5.03
888 889 0.247736 CTCCTCTTGGTGGAACGGAG 59.752 60.000 0.00 0.00 38.12 4.63
889 890 1.827399 GCTCCTCTTGGTGGAACGGA 61.827 60.000 0.00 0.00 38.12 4.69
890 891 1.376037 GCTCCTCTTGGTGGAACGG 60.376 63.158 0.00 0.00 38.12 4.44
891 892 1.738099 CGCTCCTCTTGGTGGAACG 60.738 63.158 0.00 0.00 38.12 3.95
892 893 2.035442 GCGCTCCTCTTGGTGGAAC 61.035 63.158 0.00 0.00 32.61 3.62
893 894 2.347490 GCGCTCCTCTTGGTGGAA 59.653 61.111 0.00 0.00 32.61 3.53
894 895 4.069232 CGCGCTCCTCTTGGTGGA 62.069 66.667 5.56 0.00 34.23 4.02
895 896 4.379243 ACGCGCTCCTCTTGGTGG 62.379 66.667 5.73 0.00 34.23 4.61
896 897 2.811317 GACGCGCTCCTCTTGGTG 60.811 66.667 5.73 0.00 34.23 4.17
897 898 4.070552 GGACGCGCTCCTCTTGGT 62.071 66.667 5.73 0.00 35.89 3.67
899 900 3.916392 AACGGACGCGCTCCTCTTG 62.916 63.158 20.38 10.73 36.80 3.02
900 901 3.628280 GAACGGACGCGCTCCTCTT 62.628 63.158 20.38 13.43 36.80 2.85
901 902 4.117661 GAACGGACGCGCTCCTCT 62.118 66.667 20.38 10.57 36.80 3.69
910 911 4.680237 TGCCTGCTGGAACGGACG 62.680 66.667 14.77 0.00 36.31 4.79
911 912 3.050275 GTGCCTGCTGGAACGGAC 61.050 66.667 14.77 0.00 36.31 4.79
912 913 4.329545 GGTGCCTGCTGGAACGGA 62.330 66.667 14.77 0.00 43.08 4.69
914 915 4.641645 TGGGTGCCTGCTGGAACG 62.642 66.667 14.77 0.00 43.08 3.95
915 916 2.983725 AAGTGGGTGCCTGCTGGAAC 62.984 60.000 14.77 13.52 41.35 3.62
916 917 2.766925 AAGTGGGTGCCTGCTGGAA 61.767 57.895 14.77 0.00 34.57 3.53
917 918 3.177884 AAGTGGGTGCCTGCTGGA 61.178 61.111 14.77 0.00 34.57 3.86
919 920 2.987547 CCAAGTGGGTGCCTGCTG 60.988 66.667 0.00 0.00 0.00 4.41
920 921 4.982701 GCCAAGTGGGTGCCTGCT 62.983 66.667 0.00 0.00 39.65 4.24
927 928 3.637273 GGAGGTCGCCAAGTGGGT 61.637 66.667 0.00 0.00 39.65 4.51
928 929 2.876368 GATGGAGGTCGCCAAGTGGG 62.876 65.000 0.00 0.00 42.16 4.61
929 930 1.450312 GATGGAGGTCGCCAAGTGG 60.450 63.158 0.00 0.00 42.16 4.00
930 931 1.450312 GGATGGAGGTCGCCAAGTG 60.450 63.158 0.00 0.00 42.16 3.16
931 932 2.990479 GGATGGAGGTCGCCAAGT 59.010 61.111 0.00 0.00 42.16 3.16
933 934 2.682136 TCGGATGGAGGTCGCCAA 60.682 61.111 0.00 0.00 42.16 4.52
934 935 3.458163 GTCGGATGGAGGTCGCCA 61.458 66.667 0.00 0.00 43.23 5.69
935 936 4.222847 GGTCGGATGGAGGTCGCC 62.223 72.222 0.00 0.00 0.00 5.54
938 939 2.365105 TGGGGTCGGATGGAGGTC 60.365 66.667 0.00 0.00 0.00 3.85
939 940 2.687566 GTGGGGTCGGATGGAGGT 60.688 66.667 0.00 0.00 0.00 3.85
941 942 3.849951 CGGTGGGGTCGGATGGAG 61.850 72.222 0.00 0.00 0.00 3.86
942 943 3.299760 TACGGTGGGGTCGGATGGA 62.300 63.158 0.00 0.00 0.00 3.41
943 944 2.760799 TACGGTGGGGTCGGATGG 60.761 66.667 0.00 0.00 0.00 3.51
946 947 2.044650 CTCTACGGTGGGGTCGGA 60.045 66.667 0.00 0.00 0.00 4.55
948 949 2.362120 ACCTCTACGGTGGGGTCG 60.362 66.667 0.00 0.00 46.80 4.79
956 957 4.332819 CCTGCAATTTCTTTACCTCTACGG 59.667 45.833 0.00 0.00 39.35 4.02
958 959 4.944317 AGCCTGCAATTTCTTTACCTCTAC 59.056 41.667 0.00 0.00 0.00 2.59
959 960 5.179452 AGCCTGCAATTTCTTTACCTCTA 57.821 39.130 0.00 0.00 0.00 2.43
960 961 4.013050 GAGCCTGCAATTTCTTTACCTCT 58.987 43.478 0.00 0.00 0.00 3.69
961 962 3.129462 GGAGCCTGCAATTTCTTTACCTC 59.871 47.826 0.00 0.00 0.00 3.85
962 963 3.092301 GGAGCCTGCAATTTCTTTACCT 58.908 45.455 0.00 0.00 0.00 3.08
963 964 2.166459 GGGAGCCTGCAATTTCTTTACC 59.834 50.000 0.00 0.00 0.00 2.85
964 965 2.166459 GGGGAGCCTGCAATTTCTTTAC 59.834 50.000 0.00 0.00 0.00 2.01
965 966 2.456577 GGGGAGCCTGCAATTTCTTTA 58.543 47.619 0.00 0.00 0.00 1.85
966 967 1.269958 GGGGAGCCTGCAATTTCTTT 58.730 50.000 0.00 0.00 0.00 2.52
967 968 0.615827 GGGGGAGCCTGCAATTTCTT 60.616 55.000 0.00 0.00 0.00 2.52
970 971 1.858739 TACGGGGGAGCCTGCAATTT 61.859 55.000 0.00 0.00 0.00 1.82
971 972 1.645402 ATACGGGGGAGCCTGCAATT 61.645 55.000 0.00 0.00 0.00 2.32
972 973 1.645402 AATACGGGGGAGCCTGCAAT 61.645 55.000 0.00 0.00 0.00 3.56
973 974 2.265467 GAATACGGGGGAGCCTGCAA 62.265 60.000 0.00 0.00 0.00 4.08
974 975 2.690881 AATACGGGGGAGCCTGCA 60.691 61.111 0.00 0.00 0.00 4.41
975 976 2.111251 GAATACGGGGGAGCCTGC 59.889 66.667 0.00 0.00 0.00 4.85
976 977 1.472662 ATCGAATACGGGGGAGCCTG 61.473 60.000 0.00 0.00 40.21 4.85
977 978 1.152312 ATCGAATACGGGGGAGCCT 60.152 57.895 0.00 0.00 40.21 4.58
978 979 1.186267 AGATCGAATACGGGGGAGCC 61.186 60.000 0.00 0.00 40.21 4.70
979 980 0.244178 GAGATCGAATACGGGGGAGC 59.756 60.000 0.00 0.00 40.21 4.70
981 982 0.186630 TGGAGATCGAATACGGGGGA 59.813 55.000 0.00 0.00 40.21 4.81
982 983 1.066858 CATGGAGATCGAATACGGGGG 60.067 57.143 0.00 0.00 40.21 5.40
984 985 1.066858 CCCATGGAGATCGAATACGGG 60.067 57.143 15.22 0.00 40.21 5.28
986 987 1.893137 TCCCCATGGAGATCGAATACG 59.107 52.381 15.22 0.00 35.03 3.06
988 989 2.899900 CAGTCCCCATGGAGATCGAATA 59.100 50.000 15.22 0.00 42.85 1.75
989 990 1.696336 CAGTCCCCATGGAGATCGAAT 59.304 52.381 15.22 0.00 42.85 3.34
990 991 1.123077 CAGTCCCCATGGAGATCGAA 58.877 55.000 15.22 0.00 42.85 3.71
992 993 1.750930 CCAGTCCCCATGGAGATCG 59.249 63.158 15.22 0.09 42.85 3.69
993 994 1.059006 AGCCAGTCCCCATGGAGATC 61.059 60.000 15.22 0.18 42.85 2.75
995 996 1.229951 AAGCCAGTCCCCATGGAGA 60.230 57.895 15.22 1.04 42.85 3.71
996 997 1.077212 CAAGCCAGTCCCCATGGAG 60.077 63.158 15.22 0.00 42.85 3.86
999 1000 4.326255 GACAAGCCAGTCCCCATG 57.674 61.111 0.00 0.00 32.36 3.66
1007 1008 2.046892 CGGACTGGGACAAGCCAG 60.047 66.667 0.00 0.00 38.70 4.85
1008 1009 2.525629 TCGGACTGGGACAAGCCA 60.526 61.111 0.00 0.00 38.70 4.75
1009 1010 2.047179 GTCGGACTGGGACAAGCC 60.047 66.667 0.00 0.00 38.70 4.35
1010 1011 2.432628 CGTCGGACTGGGACAAGC 60.433 66.667 6.57 0.00 38.70 4.01
1011 1012 2.261671 CCGTCGGACTGGGACAAG 59.738 66.667 4.91 0.00 38.70 3.16
1012 1013 3.998672 GCCGTCGGACTGGGACAA 61.999 66.667 17.49 0.00 38.70 3.18
1055 1056 2.413765 GACCGATCTCCAGGTCGC 59.586 66.667 3.57 0.00 46.08 5.19
1254 1255 3.369471 CGAAGAGGACAAAGGCAAGGATA 60.369 47.826 0.00 0.00 0.00 2.59
1376 1387 1.645704 CCACGGAGATGACGACGAGT 61.646 60.000 0.00 0.00 34.93 4.18
1406 1417 5.033522 AGGTAAGATCAGAGCTTAAAGGGT 58.966 41.667 9.76 0.00 30.34 4.34
1447 1589 5.036737 AGCGAATTTTGACAGAACACAAAG 58.963 37.500 0.00 0.00 37.32 2.77
1453 1595 3.300009 CACCAGCGAATTTTGACAGAAC 58.700 45.455 0.00 0.00 0.00 3.01
1469 1611 2.005451 GATAAGCACTGACAGCACCAG 58.995 52.381 1.25 0.00 37.64 4.00
1491 1646 7.663905 TGCACATGTACCAAGAAATAACTAAGT 59.336 33.333 0.00 0.00 0.00 2.24
1505 1660 4.286707 ACCTATCTAGTGCACATGTACCA 58.713 43.478 21.04 0.00 0.00 3.25
1518 1724 8.472007 AGTATCCAGAAACAGAACCTATCTAG 57.528 38.462 0.00 0.00 36.32 2.43
1537 1747 3.033659 TCTCCCAGTTCCAGAGTATCC 57.966 52.381 0.00 0.00 33.66 2.59
1550 1859 3.804325 CGCTAACACAACATATCTCCCAG 59.196 47.826 0.00 0.00 0.00 4.45
1551 1860 3.449377 TCGCTAACACAACATATCTCCCA 59.551 43.478 0.00 0.00 0.00 4.37
1552 1861 4.054780 TCGCTAACACAACATATCTCCC 57.945 45.455 0.00 0.00 0.00 4.30
1553 1862 5.523916 ACATTCGCTAACACAACATATCTCC 59.476 40.000 0.00 0.00 0.00 3.71
1554 1863 6.255670 TCACATTCGCTAACACAACATATCTC 59.744 38.462 0.00 0.00 0.00 2.75
1555 1864 6.106003 TCACATTCGCTAACACAACATATCT 58.894 36.000 0.00 0.00 0.00 1.98
1618 2003 7.094162 TGGACAAACAACATGACAAAGACTTAA 60.094 33.333 0.00 0.00 0.00 1.85
1625 2010 5.107824 CACATGGACAAACAACATGACAAA 58.892 37.500 10.47 0.00 43.46 2.83
1681 2066 2.097629 CGCATCCTCGTATCGTATGGAT 59.902 50.000 0.00 0.00 39.25 3.41
1682 2067 1.467342 CGCATCCTCGTATCGTATGGA 59.533 52.381 0.00 0.00 0.00 3.41
1683 2068 1.199327 ACGCATCCTCGTATCGTATGG 59.801 52.381 0.00 0.00 41.36 2.74
1687 2072 1.135199 ACAAACGCATCCTCGTATCGT 60.135 47.619 0.00 0.00 42.46 3.73
1688 2073 1.517276 GACAAACGCATCCTCGTATCG 59.483 52.381 0.00 0.00 42.46 2.92
1711 2097 4.142227 GCAGAGCCAGACATGAAATTCATT 60.142 41.667 5.63 0.00 34.28 2.57
1737 2123 4.642437 TCACACAAAAATTACACTCAGGCA 59.358 37.500 0.00 0.00 0.00 4.75
1739 2125 6.692681 CAGTTCACACAAAAATTACACTCAGG 59.307 38.462 0.00 0.00 0.00 3.86
1740 2126 7.471721 TCAGTTCACACAAAAATTACACTCAG 58.528 34.615 0.00 0.00 0.00 3.35
1769 2155 4.262617 CCCTGTTTCTTAAGACTAAGGCC 58.737 47.826 16.22 0.00 36.03 5.19
1770 2156 3.690139 GCCCTGTTTCTTAAGACTAAGGC 59.310 47.826 16.22 15.03 36.03 4.35
1790 2219 1.815003 AGCAAGCATACAGAAGTTGCC 59.185 47.619 1.89 0.00 43.68 4.52
1826 2255 1.076841 TGCCCAATCATTCCACTTCCA 59.923 47.619 0.00 0.00 0.00 3.53
1833 2262 3.131046 CCTAACTTGTGCCCAATCATTCC 59.869 47.826 0.00 0.00 0.00 3.01
1838 2268 3.057526 GTCAACCTAACTTGTGCCCAATC 60.058 47.826 0.00 0.00 0.00 2.67
1863 2293 5.809562 ACTCAAAACGAAGCTATCTGATGAG 59.190 40.000 12.31 12.31 37.26 2.90
1899 2329 3.119137 GCAGAACTGAAACACCAAAAGGT 60.119 43.478 5.97 0.00 0.00 3.50
2004 2462 5.367302 CACCCAAAACAATCTGAAACCAAT 58.633 37.500 0.00 0.00 0.00 3.16
2009 2467 4.100653 TGATGCACCCAAAACAATCTGAAA 59.899 37.500 0.00 0.00 0.00 2.69
2018 2476 1.805943 GCCAATTGATGCACCCAAAAC 59.194 47.619 7.12 0.00 0.00 2.43
2019 2477 1.271271 GGCCAATTGATGCACCCAAAA 60.271 47.619 7.12 0.00 0.00 2.44
2020 2478 0.324285 GGCCAATTGATGCACCCAAA 59.676 50.000 7.12 0.00 0.00 3.28
2021 2479 0.544833 AGGCCAATTGATGCACCCAA 60.545 50.000 5.01 5.91 0.00 4.12
2022 2480 1.078891 AGGCCAATTGATGCACCCA 59.921 52.632 5.01 0.00 0.00 4.51
2023 2481 1.259840 ACAGGCCAATTGATGCACCC 61.260 55.000 5.01 0.00 0.00 4.61
2025 2483 3.806625 ATAACAGGCCAATTGATGCAC 57.193 42.857 5.01 0.00 0.00 4.57
2026 2484 3.768215 TCAATAACAGGCCAATTGATGCA 59.232 39.130 5.01 0.00 35.32 3.96
2028 2486 7.042950 TGAATTCAATAACAGGCCAATTGATG 58.957 34.615 17.96 5.42 38.89 3.07
2029 2487 7.124599 TCTGAATTCAATAACAGGCCAATTGAT 59.875 33.333 17.96 8.79 38.89 2.57
2032 2490 6.855763 TCTGAATTCAATAACAGGCCAATT 57.144 33.333 9.88 0.05 0.00 2.32
2033 2491 7.093201 ACAATCTGAATTCAATAACAGGCCAAT 60.093 33.333 9.88 0.00 0.00 3.16
2034 2492 6.211184 ACAATCTGAATTCAATAACAGGCCAA 59.789 34.615 9.88 0.00 0.00 4.52
2035 2493 5.716228 ACAATCTGAATTCAATAACAGGCCA 59.284 36.000 9.88 0.00 0.00 5.36
2036 2494 6.212888 ACAATCTGAATTCAATAACAGGCC 57.787 37.500 9.88 0.00 0.00 5.19
2037 2495 8.437742 CAAAACAATCTGAATTCAATAACAGGC 58.562 33.333 9.88 0.00 0.00 4.85
2038 2496 9.695526 TCAAAACAATCTGAATTCAATAACAGG 57.304 29.630 9.88 0.00 0.00 4.00
2042 2500 9.195411 GCAGTCAAAACAATCTGAATTCAATAA 57.805 29.630 9.88 0.00 0.00 1.40
2043 2501 8.358895 TGCAGTCAAAACAATCTGAATTCAATA 58.641 29.630 9.88 0.99 0.00 1.90
2044 2502 7.211573 TGCAGTCAAAACAATCTGAATTCAAT 58.788 30.769 9.88 3.72 0.00 2.57
2045 2503 6.571605 TGCAGTCAAAACAATCTGAATTCAA 58.428 32.000 9.88 1.39 0.00 2.69
2046 2504 6.146601 TGCAGTCAAAACAATCTGAATTCA 57.853 33.333 8.12 8.12 0.00 2.57
2047 2505 7.647907 AATGCAGTCAAAACAATCTGAATTC 57.352 32.000 0.00 0.00 32.62 2.17
2049 2507 9.715121 AATTAATGCAGTCAAAACAATCTGAAT 57.285 25.926 0.00 0.00 0.00 2.57
2050 2508 8.980610 CAATTAATGCAGTCAAAACAATCTGAA 58.019 29.630 0.00 0.00 0.00 3.02
2051 2509 7.599621 CCAATTAATGCAGTCAAAACAATCTGA 59.400 33.333 0.00 0.00 0.00 3.27
2053 2511 6.369615 GCCAATTAATGCAGTCAAAACAATCT 59.630 34.615 0.00 0.00 0.00 2.40
2065 2523 4.942761 AATACCAGGCCAATTAATGCAG 57.057 40.909 5.01 0.00 0.00 4.41
2067 2525 6.840780 ATCTAATACCAGGCCAATTAATGC 57.159 37.500 5.01 0.00 0.00 3.56
2087 2545 4.401022 TGCACTCCAAACAATCTGAATCT 58.599 39.130 0.00 0.00 0.00 2.40
2107 2565 1.956477 CCAATACCAGGCCAACTATGC 59.044 52.381 5.01 0.00 0.00 3.14
2406 5250 1.064654 GAACAGCATTCCTGAATCGGC 59.935 52.381 0.00 0.00 44.64 5.54
2491 5352 3.365164 GGTAACAAATTAAGGTTGCGCGA 60.365 43.478 12.10 0.00 31.48 5.87
2687 5678 5.337250 GGACCACTGTTTTTCTTTGGTTCTT 60.337 40.000 0.00 0.00 40.75 2.52
2691 5682 2.764010 GGGACCACTGTTTTTCTTTGGT 59.236 45.455 0.00 0.00 43.43 3.67
2696 5798 2.158608 CCTCAGGGACCACTGTTTTTCT 60.159 50.000 9.10 0.00 39.48 2.52
2703 5805 0.539051 GTCATCCTCAGGGACCACTG 59.461 60.000 0.00 0.00 45.43 3.66
2711 5813 2.228059 GCATTCCATGTCATCCTCAGG 58.772 52.381 0.00 0.00 0.00 3.86
2723 5825 5.596836 AACACAATTATTCCGCATTCCAT 57.403 34.783 0.00 0.00 0.00 3.41
2726 5828 6.033831 CAGACAAACACAATTATTCCGCATTC 59.966 38.462 0.00 0.00 0.00 2.67
2729 5831 4.517075 TCAGACAAACACAATTATTCCGCA 59.483 37.500 0.00 0.00 0.00 5.69
2731 5833 5.996219 TGTCAGACAAACACAATTATTCCG 58.004 37.500 0.00 0.00 0.00 4.30
2739 5841 4.154015 CAGTCACTTGTCAGACAAACACAA 59.846 41.667 16.85 0.00 37.69 3.33
2741 5843 3.932710 TCAGTCACTTGTCAGACAAACAC 59.067 43.478 16.85 12.62 37.69 3.32
2750 5852 3.882888 GGTTCCAATTCAGTCACTTGTCA 59.117 43.478 0.00 0.00 0.00 3.58
2757 5859 2.158475 AGGCTTGGTTCCAATTCAGTCA 60.158 45.455 4.67 0.00 0.00 3.41
2758 5860 2.519013 AGGCTTGGTTCCAATTCAGTC 58.481 47.619 4.67 0.00 0.00 3.51
2766 5868 0.476338 TGCAGTTAGGCTTGGTTCCA 59.524 50.000 0.00 0.00 34.04 3.53
2768 5870 1.168714 CCTGCAGTTAGGCTTGGTTC 58.831 55.000 13.81 0.00 34.04 3.62
2770 5872 1.380302 CCCTGCAGTTAGGCTTGGT 59.620 57.895 13.81 0.00 36.47 3.67
2781 5883 0.111253 AGAAAAGGTGACCCCTGCAG 59.889 55.000 6.78 6.78 45.47 4.41
2799 5901 5.878332 TGTAACATGTGGTGCTTATTGAG 57.122 39.130 0.00 0.00 0.00 3.02
2803 5905 7.829211 ACTTAGAATGTAACATGTGGTGCTTAT 59.171 33.333 0.00 0.00 0.00 1.73
2836 5938 2.505405 CGGTAGCTAGATAGAGGCACA 58.495 52.381 0.00 0.00 0.00 4.57
2837 5939 1.813786 CCGGTAGCTAGATAGAGGCAC 59.186 57.143 0.00 0.00 0.00 5.01
2839 5941 1.272037 ACCCGGTAGCTAGATAGAGGC 60.272 57.143 0.00 0.00 0.00 4.70
2848 5950 0.752743 ACACGCATACCCGGTAGCTA 60.753 55.000 0.00 0.00 0.00 3.32
2851 5953 1.066918 GGACACGCATACCCGGTAG 59.933 63.158 0.00 0.00 0.00 3.18
2855 5957 2.234300 ATAAAGGACACGCATACCCG 57.766 50.000 0.00 0.00 0.00 5.28
2867 5969 8.856153 TCAGCAGTACAACAAAATATAAAGGA 57.144 30.769 0.00 0.00 0.00 3.36
2874 5976 8.840833 TGAAGTATCAGCAGTACAACAAAATA 57.159 30.769 0.00 0.00 0.00 1.40
2913 6015 4.201753 CGCAGTTTATCACTCAGTGGATTG 60.202 45.833 4.57 0.00 30.92 2.67
2927 6029 4.641989 AGCATGATTTCTTCCGCAGTTTAT 59.358 37.500 0.00 0.00 0.00 1.40
2944 6046 1.514553 CCGCAGACTGAGAGCATGA 59.485 57.895 6.65 0.00 0.00 3.07
2945 6047 2.172372 GCCGCAGACTGAGAGCATG 61.172 63.158 6.65 0.00 0.00 4.06
2946 6048 1.969200 ATGCCGCAGACTGAGAGCAT 61.969 55.000 20.95 20.95 32.65 3.79
2949 6051 1.537776 CCTTATGCCGCAGACTGAGAG 60.538 57.143 6.65 0.00 0.00 3.20
2973 6075 6.287525 ACAATTACCACAACAAAATCCTTGG 58.712 36.000 0.00 0.00 0.00 3.61
2984 6086 7.654520 TCACTACAAGTCTACAATTACCACAAC 59.345 37.037 0.00 0.00 0.00 3.32
2988 6092 7.292713 TGTCACTACAAGTCTACAATTACCA 57.707 36.000 0.00 0.00 30.91 3.25
2989 6093 8.656849 CAATGTCACTACAAGTCTACAATTACC 58.343 37.037 0.00 0.00 39.58 2.85
3055 6159 2.485677 CAGCAGGTGCCCAACATAG 58.514 57.895 0.00 0.00 43.38 2.23
3076 6180 9.750882 GCTACTATTTTAACTTTAGGAACAACG 57.249 33.333 0.00 0.00 0.00 4.10
3100 6204 5.806654 ATCAAATTTAACAACAGGGTGCT 57.193 34.783 0.00 0.00 0.00 4.40
3126 6231 6.204688 GGTTTGTGTAATGACAGTCAGAATGA 59.795 38.462 9.64 0.00 38.73 2.57
3135 6240 8.017373 CAGAATACAAGGTTTGTGTAATGACAG 58.983 37.037 4.78 0.00 45.03 3.51
3137 6242 8.094798 TCAGAATACAAGGTTTGTGTAATGAC 57.905 34.615 4.78 0.00 45.03 3.06
3138 6243 8.684386 TTCAGAATACAAGGTTTGTGTAATGA 57.316 30.769 4.78 3.95 45.03 2.57
3139 6244 9.912634 AATTCAGAATACAAGGTTTGTGTAATG 57.087 29.630 4.78 1.95 45.03 1.90
3140 6245 9.912634 CAATTCAGAATACAAGGTTTGTGTAAT 57.087 29.630 4.78 0.00 45.03 1.89
3141 6246 7.865385 GCAATTCAGAATACAAGGTTTGTGTAA 59.135 33.333 4.78 0.00 45.03 2.41
3143 6248 6.040842 AGCAATTCAGAATACAAGGTTTGTGT 59.959 34.615 4.78 0.00 45.03 3.72
3144 6249 6.449698 AGCAATTCAGAATACAAGGTTTGTG 58.550 36.000 4.78 0.00 45.03 3.33
3149 6280 6.476378 ACACTAGCAATTCAGAATACAAGGT 58.524 36.000 0.00 0.00 0.00 3.50
3154 6285 6.341316 TGAGGACACTAGCAATTCAGAATAC 58.659 40.000 0.00 0.00 0.00 1.89
3165 6296 1.479730 CTGCAGATGAGGACACTAGCA 59.520 52.381 8.42 0.00 0.00 3.49
3167 6298 2.106566 ACCTGCAGATGAGGACACTAG 58.893 52.381 17.39 0.00 34.37 2.57
3168 6299 1.827344 CACCTGCAGATGAGGACACTA 59.173 52.381 17.39 0.00 34.37 2.74
3173 6304 1.189752 GAGACACCTGCAGATGAGGA 58.810 55.000 17.16 0.00 34.37 3.71
3175 6306 0.177604 GGGAGACACCTGCAGATGAG 59.822 60.000 17.16 0.00 38.98 2.90
3178 6309 2.362369 CCGGGAGACACCTGCAGAT 61.362 63.158 17.39 0.00 43.37 2.90
3186 6317 1.747355 TCTTCGTATTCCGGGAGACAC 59.253 52.381 8.54 0.00 37.11 3.67
3187 6318 2.022195 CTCTTCGTATTCCGGGAGACA 58.978 52.381 8.54 0.00 38.29 3.41
3195 6326 2.599082 CACGTCTTGCTCTTCGTATTCC 59.401 50.000 0.00 0.00 35.13 3.01
3196 6327 3.890705 CACGTCTTGCTCTTCGTATTC 57.109 47.619 0.00 0.00 35.13 1.75
3253 6384 0.678048 GTGGCCCCAGTAAGCAAGAG 60.678 60.000 0.00 0.00 0.00 2.85
3255 6386 0.539438 TTGTGGCCCCAGTAAGCAAG 60.539 55.000 0.00 0.00 0.00 4.01
3261 6392 2.685106 TGAAAATTGTGGCCCCAGTA 57.315 45.000 0.00 0.00 0.00 2.74
3262 6393 1.624813 CATGAAAATTGTGGCCCCAGT 59.375 47.619 0.00 0.00 0.00 4.00
3263 6394 1.624813 ACATGAAAATTGTGGCCCCAG 59.375 47.619 0.00 0.00 0.00 4.45
3264 6395 1.347050 CACATGAAAATTGTGGCCCCA 59.653 47.619 0.00 0.00 40.60 4.96
3265 6396 2.097680 CACATGAAAATTGTGGCCCC 57.902 50.000 0.00 0.00 40.60 5.80
3270 6401 3.979948 TGCAGACCACATGAAAATTGTG 58.020 40.909 0.00 0.00 43.25 3.33
3271 6402 4.616604 CGATGCAGACCACATGAAAATTGT 60.617 41.667 0.00 0.00 0.00 2.71
3272 6403 3.855379 CGATGCAGACCACATGAAAATTG 59.145 43.478 0.00 0.00 0.00 2.32
3273 6404 3.758023 TCGATGCAGACCACATGAAAATT 59.242 39.130 0.00 0.00 0.00 1.82
3274 6405 3.127548 GTCGATGCAGACCACATGAAAAT 59.872 43.478 0.00 0.00 35.22 1.82
3275 6406 2.483877 GTCGATGCAGACCACATGAAAA 59.516 45.455 0.00 0.00 35.22 2.29
3276 6407 2.076100 GTCGATGCAGACCACATGAAA 58.924 47.619 0.00 0.00 35.22 2.69
3277 6408 1.725641 GTCGATGCAGACCACATGAA 58.274 50.000 0.00 0.00 35.22 2.57
3278 6409 0.458370 CGTCGATGCAGACCACATGA 60.458 55.000 0.00 0.00 37.85 3.07
3281 6412 1.080772 GACGTCGATGCAGACCACA 60.081 57.895 4.06 0.00 37.85 4.17
3288 6419 0.319469 TTCAGCAAGACGTCGATGCA 60.319 50.000 34.75 21.46 42.45 3.96
3292 6423 2.613730 CTACTTCAGCAAGACGTCGA 57.386 50.000 10.46 0.00 33.34 4.20
3309 6440 2.166459 CGATCAGAGAAGTTGGGTGCTA 59.834 50.000 0.00 0.00 0.00 3.49
3314 6445 0.539051 AGCCGATCAGAGAAGTTGGG 59.461 55.000 0.00 0.00 0.00 4.12
3315 6446 2.275318 GAAGCCGATCAGAGAAGTTGG 58.725 52.381 0.00 0.00 0.00 3.77
3317 6448 1.902508 TGGAAGCCGATCAGAGAAGTT 59.097 47.619 0.00 0.00 0.00 2.66
3318 6449 1.480137 CTGGAAGCCGATCAGAGAAGT 59.520 52.381 0.00 0.00 0.00 3.01
3319 6450 1.480137 ACTGGAAGCCGATCAGAGAAG 59.520 52.381 0.00 0.00 37.60 2.85
3320 6451 1.561643 ACTGGAAGCCGATCAGAGAA 58.438 50.000 0.00 0.00 37.60 2.87
3321 6452 1.478510 GAACTGGAAGCCGATCAGAGA 59.521 52.381 0.00 0.00 37.60 3.10
3323 6454 0.173481 CGAACTGGAAGCCGATCAGA 59.827 55.000 0.00 0.00 37.60 3.27
3324 6455 0.807667 CCGAACTGGAAGCCGATCAG 60.808 60.000 0.00 0.00 42.00 2.90
3325 6456 1.218047 CCGAACTGGAAGCCGATCA 59.782 57.895 0.00 0.00 42.00 2.92
3326 6457 2.174319 GCCGAACTGGAAGCCGATC 61.174 63.158 0.00 0.00 42.00 3.69
3327 6458 2.125106 GCCGAACTGGAAGCCGAT 60.125 61.111 0.00 0.00 42.00 4.18
3328 6459 2.781595 GAAGCCGAACTGGAAGCCGA 62.782 60.000 0.00 0.00 42.00 5.54
3329 6460 2.358737 AAGCCGAACTGGAAGCCG 60.359 61.111 0.00 0.00 42.00 5.52
3330 6461 1.003233 AGAAGCCGAACTGGAAGCC 60.003 57.895 0.00 0.00 42.00 4.35
3331 6462 1.021920 GGAGAAGCCGAACTGGAAGC 61.022 60.000 0.00 0.00 42.00 3.86
3332 6463 0.391793 GGGAGAAGCCGAACTGGAAG 60.392 60.000 0.00 0.00 42.00 3.46
3333 6464 1.125093 TGGGAGAAGCCGAACTGGAA 61.125 55.000 0.00 0.00 42.00 3.53
3334 6465 1.535444 TGGGAGAAGCCGAACTGGA 60.535 57.895 0.00 0.00 42.00 3.86
3335 6466 1.376037 GTGGGAGAAGCCGAACTGG 60.376 63.158 0.00 0.00 42.50 4.00
3336 6467 0.671781 CTGTGGGAGAAGCCGAACTG 60.672 60.000 0.00 0.00 37.63 3.16
3337 6468 1.674057 CTGTGGGAGAAGCCGAACT 59.326 57.895 0.00 0.00 37.63 3.01
3338 6469 2.035442 GCTGTGGGAGAAGCCGAAC 61.035 63.158 0.00 0.00 37.63 3.95
3339 6470 2.347490 GCTGTGGGAGAAGCCGAA 59.653 61.111 0.00 0.00 37.63 4.30
3340 6471 2.922503 TGCTGTGGGAGAAGCCGA 60.923 61.111 0.00 0.00 38.71 5.54
3342 6473 1.673665 CTGTGCTGTGGGAGAAGCC 60.674 63.158 0.00 0.00 38.71 4.35
3349 6480 1.406069 GGATCTGTACTGTGCTGTGGG 60.406 57.143 0.00 0.00 0.00 4.61
3371 6502 0.755686 GGGTCTCATCCAGCTACCAG 59.244 60.000 2.17 0.00 31.58 4.00
3372 6503 0.339859 AGGGTCTCATCCAGCTACCA 59.660 55.000 2.17 0.00 31.58 3.25
3374 6505 0.671251 CGAGGGTCTCATCCAGCTAC 59.329 60.000 0.00 0.00 0.00 3.58
3376 6507 1.040339 GTCGAGGGTCTCATCCAGCT 61.040 60.000 0.00 0.00 0.00 4.24
3377 6508 1.439644 GTCGAGGGTCTCATCCAGC 59.560 63.158 0.00 0.00 0.00 4.85
3380 6511 1.433879 CACGTCGAGGGTCTCATCC 59.566 63.158 10.27 0.00 0.00 3.51
3381 6512 1.226717 GCACGTCGAGGGTCTCATC 60.227 63.158 10.27 0.00 0.00 2.92
3383 6514 2.282251 AGCACGTCGAGGGTCTCA 60.282 61.111 10.27 0.00 0.00 3.27
3384 6515 2.486042 GAGCACGTCGAGGGTCTC 59.514 66.667 10.27 10.87 0.00 3.36
3404 6535 4.722700 CTGGTGGGGCCCTCGTTG 62.723 72.222 25.93 9.74 36.04 4.10
3415 6546 2.673523 CTCTTGAGCCCCTGGTGG 59.326 66.667 0.00 0.00 0.00 4.61
3416 6547 0.909610 TACCTCTTGAGCCCCTGGTG 60.910 60.000 0.00 0.00 0.00 4.17
3417 6548 0.910088 GTACCTCTTGAGCCCCTGGT 60.910 60.000 0.00 0.00 0.00 4.00
3418 6549 0.618968 AGTACCTCTTGAGCCCCTGG 60.619 60.000 0.00 0.00 0.00 4.45
3419 6550 0.827368 GAGTACCTCTTGAGCCCCTG 59.173 60.000 0.00 0.00 0.00 4.45
3420 6551 0.325765 GGAGTACCTCTTGAGCCCCT 60.326 60.000 0.00 0.00 0.00 4.79
3421 6552 0.617820 TGGAGTACCTCTTGAGCCCC 60.618 60.000 0.00 0.00 37.04 5.80
3422 6553 0.827368 CTGGAGTACCTCTTGAGCCC 59.173 60.000 0.00 0.00 37.04 5.19
3423 6554 0.176910 GCTGGAGTACCTCTTGAGCC 59.823 60.000 0.00 0.00 37.04 4.70
3424 6555 0.176910 GGCTGGAGTACCTCTTGAGC 59.823 60.000 0.00 0.00 37.04 4.26
3425 6556 1.480137 CTGGCTGGAGTACCTCTTGAG 59.520 57.143 0.00 0.00 37.04 3.02
3426 6557 1.561643 CTGGCTGGAGTACCTCTTGA 58.438 55.000 0.00 0.00 37.04 3.02
3427 6558 0.107945 GCTGGCTGGAGTACCTCTTG 60.108 60.000 0.00 0.00 37.04 3.02
3428 6559 1.268283 GGCTGGCTGGAGTACCTCTT 61.268 60.000 0.00 0.00 37.04 2.85
3429 6560 1.687493 GGCTGGCTGGAGTACCTCT 60.687 63.158 0.00 0.00 37.04 3.69
3434 6565 2.176202 TAGGTGGGCTGGCTGGAGTA 62.176 60.000 0.00 0.00 0.00 2.59
3435 6566 3.562681 TAGGTGGGCTGGCTGGAGT 62.563 63.158 0.00 0.00 0.00 3.85
3440 6571 3.081554 CAGTTAGGTGGGCTGGCT 58.918 61.111 0.00 0.00 0.00 4.75
3444 6575 2.190488 GAGCTGCAGTTAGGTGGGCT 62.190 60.000 16.64 2.90 0.00 5.19
3452 6583 3.511699 CGTCAATGTAGAGCTGCAGTTA 58.488 45.455 16.64 3.14 0.00 2.24
3453 6584 2.341257 CGTCAATGTAGAGCTGCAGTT 58.659 47.619 16.64 9.79 0.00 3.16
3454 6585 1.404717 CCGTCAATGTAGAGCTGCAGT 60.405 52.381 16.64 1.59 0.00 4.40
3456 6587 0.740868 GCCGTCAATGTAGAGCTGCA 60.741 55.000 1.02 0.00 0.00 4.41
3462 6593 1.816835 AGAACTCGCCGTCAATGTAGA 59.183 47.619 0.00 0.00 0.00 2.59
3472 6603 3.181967 CCGCTGAAGAACTCGCCG 61.182 66.667 0.00 0.00 0.00 6.46


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.