Multiple sequence alignment - TraesCS5B01G544300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G544300 chr5B 100.000 3957 0 0 1 3957 697031660 697027704 0.000000e+00 7308.0
1 TraesCS5B01G544300 chr5B 85.733 1500 178 17 989 2462 697095584 697094095 0.000000e+00 1552.0
2 TraesCS5B01G544300 chr5B 83.054 596 80 17 2502 3087 697093600 697093016 4.530000e-144 521.0
3 TraesCS5B01G544300 chr5B 86.920 474 39 10 3494 3957 697070009 697069549 9.810000e-141 510.0
4 TraesCS5B01G544300 chr5B 86.093 151 9 4 3171 3319 697079731 697079591 6.850000e-33 152.0
5 TraesCS5B01G544300 chr5B 85.135 148 10 7 952 1087 697061679 697061532 1.480000e-29 141.0
6 TraesCS5B01G544300 chr5B 97.674 43 1 0 869 911 697061796 697061754 1.530000e-09 75.0
7 TraesCS5B01G544300 chr5D 86.398 1588 179 19 989 2552 553758553 553760127 0.000000e+00 1701.0
8 TraesCS5B01G544300 chr5D 82.511 669 92 18 2502 3158 553760683 553761338 7.420000e-157 564.0
9 TraesCS5B01G544300 chr5D 87.500 472 35 10 3494 3954 553770376 553770834 1.260000e-144 523.0
10 TraesCS5B01G544300 chr5D 85.775 471 52 8 3494 3954 553866875 553867340 5.950000e-133 484.0
11 TraesCS5B01G544300 chr5D 92.941 170 9 3 3318 3486 553770163 553770330 1.100000e-60 244.0
12 TraesCS5B01G544300 chr5D 92.958 142 8 2 3170 3310 553866476 553866616 5.180000e-49 206.0
13 TraesCS5B01G544300 chr5D 82.609 161 12 7 3161 3319 553766523 553766669 1.150000e-25 128.0
14 TraesCS5B01G544300 chr5D 98.214 56 1 0 2409 2464 553760134 553760189 9.050000e-17 99.0
15 TraesCS5B01G544300 chr4A 88.889 405 28 7 2159 2552 614864023 614863625 2.140000e-132 483.0
16 TraesCS5B01G544300 chr4A 87.097 341 28 11 989 1315 614864804 614864466 4.830000e-99 372.0
17 TraesCS5B01G544300 chr4A 81.390 446 74 4 1344 1783 614864471 614864029 4.860000e-94 355.0
18 TraesCS5B01G544300 chr4A 91.549 71 6 0 2409 2479 614863618 614863548 9.050000e-17 99.0
19 TraesCS5B01G544300 chr3B 78.906 768 98 32 39 761 292025330 292024582 2.790000e-126 462.0
20 TraesCS5B01G544300 chr3B 80.443 271 30 7 512 762 526937717 526937984 6.750000e-43 185.0
21 TraesCS5B01G544300 chr4D 80.349 631 85 27 149 762 69941998 69941390 3.630000e-120 442.0
22 TraesCS5B01G544300 chr6A 73.053 1477 298 67 1026 2460 33404284 33405702 7.860000e-117 431.0
23 TraesCS5B01G544300 chr6A 73.823 1253 240 55 1021 2237 33529935 33531135 2.200000e-112 416.0
24 TraesCS5B01G544300 chr6A 80.822 438 59 8 3500 3913 30890090 30889654 1.770000e-83 320.0
25 TraesCS5B01G544300 chr6A 75.314 636 103 36 981 1597 47471786 47471186 5.070000e-64 255.0
26 TraesCS5B01G544300 chr6A 77.088 419 75 10 1020 1432 29969407 29969004 5.150000e-54 222.0
27 TraesCS5B01G544300 chr6A 76.338 355 62 15 1064 1411 45667540 45667879 1.890000e-38 171.0
28 TraesCS5B01G544300 chr6A 70.737 868 198 41 1616 2454 46295827 46294987 1.150000e-30 145.0
29 TraesCS5B01G544300 chr6A 78.059 237 35 14 1377 1603 29911892 29911663 2.480000e-27 134.0
30 TraesCS5B01G544300 chr6A 79.429 175 29 7 2089 2258 34179309 34179481 2.500000e-22 117.0
31 TraesCS5B01G544300 chr6A 76.842 190 37 7 2089 2274 34030310 34030496 2.520000e-17 100.0
32 TraesCS5B01G544300 chr6A 72.843 313 74 7 1620 1925 45668124 45668432 3.250000e-16 97.1
33 TraesCS5B01G544300 chr6A 78.448 116 18 6 2348 2460 33015644 33015533 7.100000e-08 69.4
34 TraesCS5B01G544300 chr6A 86.667 60 5 2 3494 3552 29967700 29967643 3.300000e-06 63.9
35 TraesCS5B01G544300 chr6A 94.872 39 2 0 3281 3319 30890384 30890346 1.190000e-05 62.1
36 TraesCS5B01G544300 chr2D 81.574 559 69 14 205 762 512839005 512838480 7.860000e-117 431.0
37 TraesCS5B01G544300 chr2B 80.862 580 73 19 207 764 797570550 797569987 4.730000e-114 422.0
38 TraesCS5B01G544300 chr2B 75.806 248 46 13 519 761 671768442 671768680 3.230000e-21 113.0
39 TraesCS5B01G544300 chr7A 80.839 548 87 15 233 772 709747355 709747892 7.910000e-112 414.0
40 TraesCS5B01G544300 chr6D 81.146 541 71 17 242 761 472719329 472719859 4.760000e-109 405.0
41 TraesCS5B01G544300 chr6D 82.143 476 67 12 147 619 83227241 83226781 3.710000e-105 392.0
42 TraesCS5B01G544300 chr6D 78.713 606 86 28 147 725 30278906 30279495 8.080000e-97 364.0
43 TraesCS5B01G544300 chr6D 76.378 508 84 20 1017 1512 27860116 27860599 1.420000e-59 241.0
44 TraesCS5B01G544300 chr6D 89.385 179 19 0 1017 1195 27729379 27729557 3.980000e-55 226.0
45 TraesCS5B01G544300 chr6D 84.513 226 25 7 3613 3828 15154998 15154773 8.610000e-52 215.0
46 TraesCS5B01G544300 chr6D 85.864 191 16 7 1020 1201 27539128 27538940 4.040000e-45 193.0
47 TraesCS5B01G544300 chr6D 78.286 175 30 7 2089 2258 28657209 28657038 5.410000e-19 106.0
48 TraesCS5B01G544300 chr6D 85.075 67 7 1 1453 1516 26601063 26600997 9.180000e-07 65.8
49 TraesCS5B01G544300 chr1D 81.405 484 75 11 283 762 475824999 475824527 8.020000e-102 381.0
50 TraesCS5B01G544300 chr1B 82.578 419 64 8 218 635 4959328 4958918 1.050000e-95 361.0
51 TraesCS5B01G544300 chr3D 79.339 484 73 12 261 725 399498194 399498669 8.250000e-82 315.0
52 TraesCS5B01G544300 chrUn 82.471 348 56 4 3612 3954 137677438 137677785 2.310000e-77 300.0
53 TraesCS5B01G544300 chrUn 72.410 946 189 47 1028 1925 112304467 112303546 6.610000e-58 235.0
54 TraesCS5B01G544300 chrUn 74.016 381 78 18 2083 2451 27448840 27449211 6.900000e-28 135.0
55 TraesCS5B01G544300 chrUn 80.000 175 28 7 2089 2258 101887188 101887360 5.370000e-24 122.0
56 TraesCS5B01G544300 chrUn 71.690 491 111 21 1779 2258 27073888 27074361 1.160000e-20 111.0
57 TraesCS5B01G544300 chr6B 74.933 746 134 32 1021 1737 60615012 60615733 3.870000e-75 292.0
58 TraesCS5B01G544300 chr6B 78.070 456 83 16 2012 2460 59828345 59827900 5.040000e-69 272.0
59 TraesCS5B01G544300 chr6B 70.889 1508 326 82 1011 2454 79847063 79848521 8.490000e-62 248.0
60 TraesCS5B01G544300 chr6B 89.773 176 16 2 1017 1191 81008067 81008241 1.430000e-54 224.0
61 TraesCS5B01G544300 chr6B 70.787 1181 263 60 1026 2173 77391521 77392652 1.120000e-45 195.0
62 TraesCS5B01G544300 chr6B 81.333 225 35 1 3650 3867 59825177 59824953 4.060000e-40 176.0
63 TraesCS5B01G544300 chr6B 78.109 201 34 9 1321 1516 51348396 51348201 6.950000e-23 119.0
64 TraesCS5B01G544300 chr6B 73.463 309 71 7 1620 1921 79437681 79437377 5.410000e-19 106.0
65 TraesCS5B01G544300 chr6B 73.463 309 71 7 1620 1921 79555174 79554870 5.410000e-19 106.0
66 TraesCS5B01G544300 chr6B 73.052 308 71 7 1620 1921 79641499 79641198 9.050000e-17 99.0
67 TraesCS5B01G544300 chr6B 75.635 197 39 7 2269 2460 78447241 78447049 5.450000e-14 89.8
68 TraesCS5B01G544300 chr2A 77.093 227 41 11 539 761 57846242 57846461 1.930000e-23 121.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G544300 chr5B 697027704 697031660 3956 True 7308.000000 7308 100.000000 1 3957 1 chr5B.!!$R1 3956
1 TraesCS5B01G544300 chr5B 697093016 697095584 2568 True 1036.500000 1552 84.393500 989 3087 2 chr5B.!!$R5 2098
2 TraesCS5B01G544300 chr5D 553758553 553761338 2785 False 788.000000 1701 89.041000 989 3158 3 chr5D.!!$F1 2169
3 TraesCS5B01G544300 chr5D 553866476 553867340 864 False 345.000000 484 89.366500 3170 3954 2 chr5D.!!$F3 784
4 TraesCS5B01G544300 chr5D 553766523 553770834 4311 False 298.333333 523 87.683333 3161 3954 3 chr5D.!!$F2 793
5 TraesCS5B01G544300 chr4A 614863548 614864804 1256 True 327.250000 483 87.231250 989 2552 4 chr4A.!!$R1 1563
6 TraesCS5B01G544300 chr3B 292024582 292025330 748 True 462.000000 462 78.906000 39 761 1 chr3B.!!$R1 722
7 TraesCS5B01G544300 chr4D 69941390 69941998 608 True 442.000000 442 80.349000 149 762 1 chr4D.!!$R1 613
8 TraesCS5B01G544300 chr6A 33404284 33405702 1418 False 431.000000 431 73.053000 1026 2460 1 chr6A.!!$F1 1434
9 TraesCS5B01G544300 chr6A 33529935 33531135 1200 False 416.000000 416 73.823000 1021 2237 1 chr6A.!!$F2 1216
10 TraesCS5B01G544300 chr6A 47471186 47471786 600 True 255.000000 255 75.314000 981 1597 1 chr6A.!!$R4 616
11 TraesCS5B01G544300 chr2D 512838480 512839005 525 True 431.000000 431 81.574000 205 762 1 chr2D.!!$R1 557
12 TraesCS5B01G544300 chr2B 797569987 797570550 563 True 422.000000 422 80.862000 207 764 1 chr2B.!!$R1 557
13 TraesCS5B01G544300 chr7A 709747355 709747892 537 False 414.000000 414 80.839000 233 772 1 chr7A.!!$F1 539
14 TraesCS5B01G544300 chr6D 472719329 472719859 530 False 405.000000 405 81.146000 242 761 1 chr6D.!!$F4 519
15 TraesCS5B01G544300 chr6D 30278906 30279495 589 False 364.000000 364 78.713000 147 725 1 chr6D.!!$F3 578
16 TraesCS5B01G544300 chrUn 112303546 112304467 921 True 235.000000 235 72.410000 1028 1925 1 chrUn.!!$R1 897
17 TraesCS5B01G544300 chr6B 60615012 60615733 721 False 292.000000 292 74.933000 1021 1737 1 chr6B.!!$F1 716
18 TraesCS5B01G544300 chr6B 79847063 79848521 1458 False 248.000000 248 70.889000 1011 2454 1 chr6B.!!$F3 1443
19 TraesCS5B01G544300 chr6B 59824953 59828345 3392 True 224.000000 272 79.701500 2012 3867 2 chr6B.!!$R6 1855

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
881 944 0.034198 TCCATCGTCGTGGCTTTTCA 59.966 50.0 8.46 0.0 39.19 2.69 F
1560 1664 0.036483 TGCTCGGCTGCATTTACTCA 60.036 50.0 0.50 0.0 38.12 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2388 2573 1.066143 ACTGTAGGTCAATTGAGCCGG 60.066 52.381 29.09 22.19 43.11 6.13 R
3490 9077 0.402887 TCATGGGCATATGAGGGCTG 59.597 55.000 6.97 0.00 32.39 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 3.692406 GTCTCCGGACGGCCTGTT 61.692 66.667 5.33 0.00 32.47 3.16
22 23 2.920912 TCTCCGGACGGCCTGTTT 60.921 61.111 5.33 0.00 34.68 2.83
23 24 2.032071 CTCCGGACGGCCTGTTTT 59.968 61.111 5.33 0.00 34.68 2.43
24 25 1.599797 CTCCGGACGGCCTGTTTTT 60.600 57.895 5.33 0.00 34.68 1.94
198 207 9.026074 GTTCGAAATTTTGAATACAAAGGTTCA 57.974 29.630 21.07 0.00 44.97 3.18
199 208 9.587772 TTCGAAATTTTGAATACAAAGGTTCAA 57.412 25.926 15.57 0.00 44.97 2.69
267 296 6.676237 ACAAAAGTTCGCCAATTCAAAAAT 57.324 29.167 0.00 0.00 0.00 1.82
316 346 6.597262 AAAAATCCAAAATTGTTCGTGACC 57.403 33.333 0.00 0.00 0.00 4.02
326 358 9.239002 CAAAATTGTTCGTGACCTACAAAATAA 57.761 29.630 2.03 0.00 35.62 1.40
427 461 8.879342 ATGTTCGTGGATTTCAAAAATTGTTA 57.121 26.923 0.00 0.00 0.00 2.41
452 486 5.118510 CACCAATTTCCTAAAACATGTTCGC 59.881 40.000 12.39 0.00 0.00 4.70
453 487 5.221342 ACCAATTTCCTAAAACATGTTCGCA 60.221 36.000 12.39 0.00 0.00 5.10
459 493 4.092821 TCCTAAAACATGTTCGCAGATTCG 59.907 41.667 12.39 0.00 35.04 3.34
470 504 5.147162 GTTCGCAGATTCGAGAAATGTTTT 58.853 37.500 0.00 0.00 39.82 2.43
482 516 8.029642 TCGAGAAATGTTTTCCTATTCAAGAC 57.970 34.615 0.00 0.00 0.00 3.01
712 767 1.941377 AATGTGGTCATGGCCATTGT 58.059 45.000 24.46 8.83 41.08 2.71
739 802 6.405397 GGTTATGATTTAGTTTCCCGTTGCAT 60.405 38.462 0.00 0.00 0.00 3.96
764 827 1.471119 GGGCCCTTTTGCTAGTAACC 58.529 55.000 17.04 0.00 0.00 2.85
765 828 1.471119 GGCCCTTTTGCTAGTAACCC 58.529 55.000 0.00 0.00 0.00 4.11
766 829 1.005569 GGCCCTTTTGCTAGTAACCCT 59.994 52.381 0.00 0.00 0.00 4.34
767 830 2.366533 GCCCTTTTGCTAGTAACCCTC 58.633 52.381 0.00 0.00 0.00 4.30
768 831 2.026169 GCCCTTTTGCTAGTAACCCTCT 60.026 50.000 0.00 0.00 0.00 3.69
769 832 3.199289 GCCCTTTTGCTAGTAACCCTCTA 59.801 47.826 0.00 0.00 0.00 2.43
770 833 4.324022 GCCCTTTTGCTAGTAACCCTCTAA 60.324 45.833 0.00 0.00 0.00 2.10
771 834 5.631717 GCCCTTTTGCTAGTAACCCTCTAAT 60.632 44.000 0.00 0.00 0.00 1.73
772 835 6.424032 CCCTTTTGCTAGTAACCCTCTAATT 58.576 40.000 0.00 0.00 0.00 1.40
773 836 7.571025 CCCTTTTGCTAGTAACCCTCTAATTA 58.429 38.462 0.00 0.00 0.00 1.40
774 837 8.218488 CCCTTTTGCTAGTAACCCTCTAATTAT 58.782 37.037 0.00 0.00 0.00 1.28
775 838 9.057089 CCTTTTGCTAGTAACCCTCTAATTATG 57.943 37.037 0.00 0.00 0.00 1.90
776 839 8.974060 TTTTGCTAGTAACCCTCTAATTATGG 57.026 34.615 0.00 0.00 0.00 2.74
777 840 7.924358 TTGCTAGTAACCCTCTAATTATGGA 57.076 36.000 6.30 0.00 0.00 3.41
778 841 7.924358 TGCTAGTAACCCTCTAATTATGGAA 57.076 36.000 6.30 0.00 0.00 3.53
779 842 8.506196 TGCTAGTAACCCTCTAATTATGGAAT 57.494 34.615 6.30 0.00 0.00 3.01
780 843 8.375506 TGCTAGTAACCCTCTAATTATGGAATG 58.624 37.037 6.30 0.00 0.00 2.67
781 844 8.594550 GCTAGTAACCCTCTAATTATGGAATGA 58.405 37.037 6.30 0.00 0.00 2.57
784 847 9.628500 AGTAACCCTCTAATTATGGAATGAAAC 57.372 33.333 6.30 0.00 0.00 2.78
785 848 9.628500 GTAACCCTCTAATTATGGAATGAAACT 57.372 33.333 6.30 0.00 0.00 2.66
786 849 8.753497 AACCCTCTAATTATGGAATGAAACTC 57.247 34.615 6.30 0.00 0.00 3.01
787 850 8.107196 ACCCTCTAATTATGGAATGAAACTCT 57.893 34.615 6.30 0.00 0.00 3.24
788 851 8.214364 ACCCTCTAATTATGGAATGAAACTCTC 58.786 37.037 6.30 0.00 0.00 3.20
789 852 8.213679 CCCTCTAATTATGGAATGAAACTCTCA 58.786 37.037 6.30 0.00 38.81 3.27
797 860 6.932356 TGGAATGAAACTCTCATATTCTGC 57.068 37.500 0.00 0.00 44.43 4.26
798 861 5.525012 TGGAATGAAACTCTCATATTCTGCG 59.475 40.000 0.00 0.00 44.43 5.18
799 862 5.415415 AATGAAACTCTCATATTCTGCGC 57.585 39.130 0.00 0.00 44.43 6.09
800 863 3.860641 TGAAACTCTCATATTCTGCGCA 58.139 40.909 10.98 10.98 0.00 6.09
801 864 3.867493 TGAAACTCTCATATTCTGCGCAG 59.133 43.478 31.53 31.53 0.00 5.18
802 865 3.808466 AACTCTCATATTCTGCGCAGA 57.192 42.857 35.30 35.30 35.27 4.26
803 866 7.127647 ATGAAACTCTCATATTCTGCGCAGAA 61.128 38.462 44.57 44.57 43.32 3.02
804 867 8.539422 ATGAAACTCTCATATTCTGCGCAGAAA 61.539 37.037 45.55 34.82 43.32 2.52
825 888 4.577834 AAAATATATGAAAACGGGCCGG 57.422 40.909 31.78 12.53 0.00 6.13
826 889 2.943036 ATATATGAAAACGGGCCGGT 57.057 45.000 31.78 24.00 0.00 5.28
827 890 1.956297 TATATGAAAACGGGCCGGTG 58.044 50.000 31.78 2.48 0.00 4.94
828 891 0.750182 ATATGAAAACGGGCCGGTGG 60.750 55.000 31.78 2.04 0.00 4.61
829 892 1.839148 TATGAAAACGGGCCGGTGGA 61.839 55.000 31.78 11.89 0.00 4.02
830 893 2.360726 GAAAACGGGCCGGTGGAT 60.361 61.111 31.78 14.36 0.00 3.41
831 894 2.360726 AAAACGGGCCGGTGGATC 60.361 61.111 31.78 0.00 0.00 3.36
832 895 3.198953 AAAACGGGCCGGTGGATCA 62.199 57.895 31.78 0.00 0.00 2.92
833 896 2.700407 AAAACGGGCCGGTGGATCAA 62.700 55.000 31.78 0.00 0.00 2.57
834 897 3.912745 AACGGGCCGGTGGATCAAC 62.913 63.158 31.78 0.00 0.00 3.18
835 898 4.096003 CGGGCCGGTGGATCAACT 62.096 66.667 20.56 0.00 0.00 3.16
836 899 2.355115 GGGCCGGTGGATCAACTT 59.645 61.111 1.90 0.00 0.00 2.66
837 900 1.605453 GGGCCGGTGGATCAACTTA 59.395 57.895 1.90 0.00 0.00 2.24
838 901 0.182775 GGGCCGGTGGATCAACTTAT 59.817 55.000 1.90 0.00 0.00 1.73
839 902 1.409661 GGGCCGGTGGATCAACTTATT 60.410 52.381 1.90 0.00 0.00 1.40
840 903 2.375146 GGCCGGTGGATCAACTTATTT 58.625 47.619 1.90 0.00 0.00 1.40
841 904 2.758423 GGCCGGTGGATCAACTTATTTT 59.242 45.455 1.90 0.00 0.00 1.82
842 905 3.428862 GGCCGGTGGATCAACTTATTTTG 60.429 47.826 1.90 0.00 0.00 2.44
843 906 3.192633 GCCGGTGGATCAACTTATTTTGT 59.807 43.478 1.90 0.00 0.00 2.83
844 907 4.321675 GCCGGTGGATCAACTTATTTTGTT 60.322 41.667 1.90 0.00 0.00 2.83
845 908 5.106078 GCCGGTGGATCAACTTATTTTGTTA 60.106 40.000 1.90 0.00 0.00 2.41
846 909 6.405397 GCCGGTGGATCAACTTATTTTGTTAT 60.405 38.462 1.90 0.00 0.00 1.89
847 910 7.543756 CCGGTGGATCAACTTATTTTGTTATT 58.456 34.615 0.00 0.00 0.00 1.40
848 911 7.700656 CCGGTGGATCAACTTATTTTGTTATTC 59.299 37.037 0.00 0.00 0.00 1.75
849 912 8.458843 CGGTGGATCAACTTATTTTGTTATTCT 58.541 33.333 0.00 0.00 0.00 2.40
870 933 8.664211 ATTCTTTAGTTAGGAAATCCATCGTC 57.336 34.615 1.67 0.00 38.89 4.20
871 934 6.270815 TCTTTAGTTAGGAAATCCATCGTCG 58.729 40.000 1.67 0.00 38.89 5.12
872 935 5.587388 TTAGTTAGGAAATCCATCGTCGT 57.413 39.130 1.67 0.00 38.89 4.34
873 936 3.782046 AGTTAGGAAATCCATCGTCGTG 58.218 45.455 1.67 0.00 38.89 4.35
874 937 2.864343 GTTAGGAAATCCATCGTCGTGG 59.136 50.000 1.67 7.33 40.76 4.94
875 938 0.462047 AGGAAATCCATCGTCGTGGC 60.462 55.000 1.67 0.00 39.19 5.01
876 939 0.462047 GGAAATCCATCGTCGTGGCT 60.462 55.000 8.46 0.00 39.19 4.75
877 940 1.369625 GAAATCCATCGTCGTGGCTT 58.630 50.000 8.46 3.86 39.19 4.35
878 941 1.737793 GAAATCCATCGTCGTGGCTTT 59.262 47.619 12.38 12.38 39.55 3.51
879 942 1.821216 AATCCATCGTCGTGGCTTTT 58.179 45.000 8.46 1.89 39.19 2.27
880 943 1.369625 ATCCATCGTCGTGGCTTTTC 58.630 50.000 8.46 0.00 39.19 2.29
881 944 0.034198 TCCATCGTCGTGGCTTTTCA 59.966 50.000 8.46 0.00 39.19 2.69
882 945 0.165944 CCATCGTCGTGGCTTTTCAC 59.834 55.000 0.00 0.00 31.43 3.18
890 953 3.294493 GGCTTTTCACGGCCTGCA 61.294 61.111 0.00 0.00 44.48 4.41
891 954 2.050077 GCTTTTCACGGCCTGCAC 60.050 61.111 0.00 0.00 0.00 4.57
892 955 2.555547 GCTTTTCACGGCCTGCACT 61.556 57.895 0.00 0.00 0.00 4.40
893 956 1.283793 CTTTTCACGGCCTGCACTG 59.716 57.895 0.00 0.00 0.00 3.66
894 957 2.737932 CTTTTCACGGCCTGCACTGC 62.738 60.000 0.00 0.00 0.00 4.40
899 962 4.389576 CGGCCTGCACTGCGTTTC 62.390 66.667 0.00 0.00 0.00 2.78
900 963 3.286751 GGCCTGCACTGCGTTTCA 61.287 61.111 0.00 0.00 0.00 2.69
901 964 2.629656 GGCCTGCACTGCGTTTCAT 61.630 57.895 0.00 0.00 0.00 2.57
902 965 1.286880 GCCTGCACTGCGTTTCATT 59.713 52.632 0.00 0.00 0.00 2.57
903 966 0.730494 GCCTGCACTGCGTTTCATTC 60.730 55.000 0.00 0.00 0.00 2.67
904 967 0.592637 CCTGCACTGCGTTTCATTCA 59.407 50.000 0.00 0.00 0.00 2.57
905 968 1.664016 CCTGCACTGCGTTTCATTCAC 60.664 52.381 0.00 0.00 0.00 3.18
906 969 1.265095 CTGCACTGCGTTTCATTCACT 59.735 47.619 0.00 0.00 0.00 3.41
907 970 2.480037 CTGCACTGCGTTTCATTCACTA 59.520 45.455 0.00 0.00 0.00 2.74
908 971 2.223144 TGCACTGCGTTTCATTCACTAC 59.777 45.455 0.00 0.00 0.00 2.73
909 972 2.480419 GCACTGCGTTTCATTCACTACT 59.520 45.455 0.00 0.00 0.00 2.57
910 973 3.423645 GCACTGCGTTTCATTCACTACTC 60.424 47.826 0.00 0.00 0.00 2.59
911 974 3.123621 CACTGCGTTTCATTCACTACTCC 59.876 47.826 0.00 0.00 0.00 3.85
912 975 3.006967 ACTGCGTTTCATTCACTACTCCT 59.993 43.478 0.00 0.00 0.00 3.69
913 976 3.585862 TGCGTTTCATTCACTACTCCTC 58.414 45.455 0.00 0.00 0.00 3.71
914 977 3.006430 TGCGTTTCATTCACTACTCCTCA 59.994 43.478 0.00 0.00 0.00 3.86
915 978 3.614616 GCGTTTCATTCACTACTCCTCAG 59.385 47.826 0.00 0.00 0.00 3.35
916 979 3.614616 CGTTTCATTCACTACTCCTCAGC 59.385 47.826 0.00 0.00 0.00 4.26
917 980 3.895232 TTCATTCACTACTCCTCAGCC 57.105 47.619 0.00 0.00 0.00 4.85
918 981 2.111384 TCATTCACTACTCCTCAGCCC 58.889 52.381 0.00 0.00 0.00 5.19
919 982 1.833630 CATTCACTACTCCTCAGCCCA 59.166 52.381 0.00 0.00 0.00 5.36
920 983 1.267121 TTCACTACTCCTCAGCCCAC 58.733 55.000 0.00 0.00 0.00 4.61
921 984 0.614979 TCACTACTCCTCAGCCCACC 60.615 60.000 0.00 0.00 0.00 4.61
922 985 0.904865 CACTACTCCTCAGCCCACCA 60.905 60.000 0.00 0.00 0.00 4.17
923 986 0.616111 ACTACTCCTCAGCCCACCAG 60.616 60.000 0.00 0.00 0.00 4.00
924 987 0.324738 CTACTCCTCAGCCCACCAGA 60.325 60.000 0.00 0.00 0.00 3.86
925 988 0.324738 TACTCCTCAGCCCACCAGAG 60.325 60.000 0.00 0.00 0.00 3.35
926 989 1.305633 CTCCTCAGCCCACCAGAGA 60.306 63.158 0.00 0.00 0.00 3.10
927 990 1.610673 TCCTCAGCCCACCAGAGAC 60.611 63.158 0.00 0.00 0.00 3.36
928 991 1.915266 CCTCAGCCCACCAGAGACA 60.915 63.158 0.00 0.00 0.00 3.41
929 992 1.294780 CTCAGCCCACCAGAGACAC 59.705 63.158 0.00 0.00 0.00 3.67
930 993 2.177594 CTCAGCCCACCAGAGACACC 62.178 65.000 0.00 0.00 0.00 4.16
931 994 2.930562 AGCCCACCAGAGACACCC 60.931 66.667 0.00 0.00 0.00 4.61
932 995 4.035102 GCCCACCAGAGACACCCC 62.035 72.222 0.00 0.00 0.00 4.95
933 996 3.706373 CCCACCAGAGACACCCCG 61.706 72.222 0.00 0.00 0.00 5.73
934 997 3.706373 CCACCAGAGACACCCCGG 61.706 72.222 0.00 0.00 0.00 5.73
935 998 2.603473 CACCAGAGACACCCCGGA 60.603 66.667 0.73 0.00 0.00 5.14
936 999 2.283966 ACCAGAGACACCCCGGAG 60.284 66.667 0.73 0.00 0.00 4.63
956 1019 3.736100 CGCAGCCGCACCAATCAA 61.736 61.111 0.00 0.00 38.40 2.57
957 1020 2.126346 GCAGCCGCACCAATCAAC 60.126 61.111 0.00 0.00 38.36 3.18
958 1021 2.918345 GCAGCCGCACCAATCAACA 61.918 57.895 0.00 0.00 38.36 3.33
959 1022 1.210931 CAGCCGCACCAATCAACAG 59.789 57.895 0.00 0.00 0.00 3.16
960 1023 1.228245 AGCCGCACCAATCAACAGT 60.228 52.632 0.00 0.00 0.00 3.55
961 1024 0.823356 AGCCGCACCAATCAACAGTT 60.823 50.000 0.00 0.00 0.00 3.16
962 1025 0.387239 GCCGCACCAATCAACAGTTC 60.387 55.000 0.00 0.00 0.00 3.01
963 1026 0.950836 CCGCACCAATCAACAGTTCA 59.049 50.000 0.00 0.00 0.00 3.18
964 1027 1.069022 CCGCACCAATCAACAGTTCAG 60.069 52.381 0.00 0.00 0.00 3.02
965 1028 1.872952 CGCACCAATCAACAGTTCAGA 59.127 47.619 0.00 0.00 0.00 3.27
966 1029 2.485426 CGCACCAATCAACAGTTCAGAT 59.515 45.455 0.00 0.00 0.00 2.90
967 1030 3.425359 CGCACCAATCAACAGTTCAGATC 60.425 47.826 0.00 0.00 0.00 2.75
968 1031 3.425359 GCACCAATCAACAGTTCAGATCG 60.425 47.826 0.00 0.00 0.00 3.69
969 1032 3.996363 CACCAATCAACAGTTCAGATCGA 59.004 43.478 0.00 0.00 0.00 3.59
970 1033 4.092529 CACCAATCAACAGTTCAGATCGAG 59.907 45.833 0.00 0.00 0.00 4.04
971 1034 4.021104 ACCAATCAACAGTTCAGATCGAGA 60.021 41.667 0.00 0.00 0.00 4.04
972 1035 5.114780 CCAATCAACAGTTCAGATCGAGAT 58.885 41.667 0.00 0.00 0.00 2.75
973 1036 5.233902 CCAATCAACAGTTCAGATCGAGATC 59.766 44.000 5.00 5.00 38.09 2.75
974 1037 4.377839 TCAACAGTTCAGATCGAGATCC 57.622 45.455 9.27 0.00 38.58 3.36
975 1038 3.131223 TCAACAGTTCAGATCGAGATCCC 59.869 47.826 9.27 0.00 38.58 3.85
976 1039 1.678627 ACAGTTCAGATCGAGATCCCG 59.321 52.381 9.27 0.00 38.58 5.14
977 1040 1.678627 CAGTTCAGATCGAGATCCCGT 59.321 52.381 9.27 0.00 38.58 5.28
978 1041 1.950909 AGTTCAGATCGAGATCCCGTC 59.049 52.381 9.27 0.00 38.58 4.79
979 1042 0.945099 TTCAGATCGAGATCCCGTCG 59.055 55.000 9.27 0.00 38.58 5.12
1008 1071 0.106469 AGTAGGGCGAGATGAGCAGA 60.106 55.000 0.00 0.00 36.08 4.26
1011 1074 2.795110 GGGCGAGATGAGCAGAGCT 61.795 63.158 0.00 0.00 43.88 4.09
1062 1137 3.136750 CTGCCCGAGATCCTCCTG 58.863 66.667 0.00 0.00 0.00 3.86
1195 1270 3.620545 AACCCTCCCCTCCTCGGTC 62.621 68.421 0.00 0.00 0.00 4.79
1211 1286 0.379669 GGTCTCTTCCGCGTCGAATA 59.620 55.000 4.92 0.00 0.00 1.75
1212 1287 1.464821 GTCTCTTCCGCGTCGAATAC 58.535 55.000 4.92 0.00 0.00 1.89
1214 1289 1.469703 TCTCTTCCGCGTCGAATACAA 59.530 47.619 4.92 0.00 0.00 2.41
1215 1290 2.098607 TCTCTTCCGCGTCGAATACAAT 59.901 45.455 4.92 0.00 0.00 2.71
1217 1292 1.521423 CTTCCGCGTCGAATACAATCC 59.479 52.381 4.92 0.00 0.00 3.01
1263 1338 2.267642 CTCGGTGCCCCAAATCGA 59.732 61.111 0.00 0.00 0.00 3.59
1304 1382 2.174319 GGCGAGGAAACGAGGATGC 61.174 63.158 0.00 0.00 35.09 3.91
1315 1393 1.069935 GAGGATGCCGGCTTCTACC 59.930 63.158 33.51 24.34 0.00 3.18
1354 1435 1.227674 GGCCTGGTGCTAATCCTCG 60.228 63.158 0.00 0.00 40.92 4.63
1432 1518 2.689813 CCATTCCCCCAGGGTTCC 59.310 66.667 4.22 0.00 44.74 3.62
1435 1527 0.614697 CATTCCCCCAGGGTTCCAAC 60.615 60.000 4.22 0.00 44.74 3.77
1450 1542 5.936686 GTTCCAACTTGTTAGAACCCTAC 57.063 43.478 11.74 0.00 33.98 3.18
1451 1543 4.628963 TCCAACTTGTTAGAACCCTACC 57.371 45.455 0.00 0.00 0.00 3.18
1517 1615 1.568504 CAGGTGGTCTTGGTAGGCTA 58.431 55.000 0.00 0.00 0.00 3.93
1534 1638 4.019174 AGGCTATGGTGAGGAACAAATTG 58.981 43.478 0.00 0.00 0.00 2.32
1552 1656 4.994471 CACAGGTGCTCGGCTGCA 62.994 66.667 0.50 0.00 41.05 4.41
1560 1664 0.036483 TGCTCGGCTGCATTTACTCA 60.036 50.000 0.50 0.00 38.12 3.41
1597 1701 0.600557 GGGCGATCTCATCTCGACAT 59.399 55.000 0.63 0.00 46.04 3.06
1600 1704 1.727535 GCGATCTCATCTCGACATCGG 60.728 57.143 0.73 0.00 41.34 4.18
1603 1707 3.186613 CGATCTCATCTCGACATCGGTTA 59.813 47.826 0.73 0.00 38.46 2.85
1604 1708 4.667922 CGATCTCATCTCGACATCGGTTAG 60.668 50.000 0.73 0.00 38.46 2.34
1615 1719 4.217767 CGACATCGGTTAGATCCAAGGATA 59.782 45.833 0.68 0.00 37.52 2.59
1616 1738 5.105716 CGACATCGGTTAGATCCAAGGATAT 60.106 44.000 0.68 1.10 37.52 1.63
1632 1769 4.357325 AGGATATCGTGGCTTCTATGGAT 58.643 43.478 0.00 0.00 0.00 3.41
1675 1812 3.444034 GGATTCCCTTTACTGGTTGCTTC 59.556 47.826 0.00 0.00 0.00 3.86
1678 1815 3.686016 TCCCTTTACTGGTTGCTTCATC 58.314 45.455 0.00 0.00 0.00 2.92
1679 1816 2.755103 CCCTTTACTGGTTGCTTCATCC 59.245 50.000 0.00 0.00 0.00 3.51
1680 1817 2.755103 CCTTTACTGGTTGCTTCATCCC 59.245 50.000 0.00 0.00 0.00 3.85
1710 1853 9.171877 GGAATTCTTGAGTTTGATCTTGATAGT 57.828 33.333 5.23 0.00 0.00 2.12
1743 1886 2.107378 TGTGATACCTTTGCCTGTGGAA 59.893 45.455 0.00 0.00 0.00 3.53
1752 1895 3.681593 TTGCCTGTGGAATTGGATTTG 57.318 42.857 0.00 0.00 0.00 2.32
1767 1910 2.819608 GGATTTGGTGAGCAGCAGTTTA 59.180 45.455 2.45 0.00 40.18 2.01
1792 1935 4.891168 TGTTCTCAGTTATACGGGCAGATA 59.109 41.667 0.00 0.00 0.00 1.98
1813 1956 1.606601 GGTGGGCTTGGTTTCCTCC 60.607 63.158 0.00 0.00 0.00 4.30
1856 2005 1.192146 TTGTGGGAGAGGAAGACCGG 61.192 60.000 0.00 0.00 41.83 5.28
1889 2038 1.620822 ACTTCATGGGTGCTGGAAAC 58.379 50.000 0.00 0.00 0.00 2.78
1908 2057 9.294030 CTGGAAACAACTATTGAAATTGATAGC 57.706 33.333 0.00 0.00 42.06 2.97
1926 2075 5.775701 TGATAGCCTACTTCCTCTGGATTAC 59.224 44.000 0.00 0.00 0.00 1.89
1936 2085 1.339610 CTCTGGATTACGCAGAGGAGG 59.660 57.143 8.61 0.00 37.57 4.30
1941 2090 1.403687 ATTACGCAGAGGAGGGAGGC 61.404 60.000 0.00 0.00 0.00 4.70
1971 2120 3.566742 TGATACTAGCGTATGCCGAAGAA 59.433 43.478 2.51 0.00 44.31 2.52
1991 2140 5.003804 AGAAAATAACACGGCTCTCATGTT 58.996 37.500 0.00 0.00 39.75 2.71
1994 2146 5.339008 AATAACACGGCTCTCATGTTAGA 57.661 39.130 0.00 0.00 40.95 2.10
2003 2155 4.507710 GCTCTCATGTTAGATGTTGGTCA 58.492 43.478 0.00 0.00 0.00 4.02
2040 2192 6.765036 TCTTCATGATCCAGCTTAAGTCATTC 59.235 38.462 4.02 0.00 0.00 2.67
2069 2221 4.155099 TGAGAAACTCTTGCGAAACAACAA 59.845 37.500 0.00 0.00 33.68 2.83
2073 2225 5.554822 AACTCTTGCGAAACAACAACTTA 57.445 34.783 0.00 0.00 33.68 2.24
2075 2227 4.873827 ACTCTTGCGAAACAACAACTTAGA 59.126 37.500 0.00 0.00 33.68 2.10
2120 2272 4.113354 GTCTACACTGCAGGTAATAGCAC 58.887 47.826 19.93 9.59 36.62 4.40
2137 2290 1.202177 GCACGCTTTACATCATGGGTG 60.202 52.381 0.00 0.00 43.25 4.61
2144 2300 5.799936 CGCTTTACATCATGGGTGTAAAAAG 59.200 40.000 24.41 19.97 45.85 2.27
2175 2331 7.630026 TGATTTTCGATAATTGATTGACGGAG 58.370 34.615 2.53 0.00 0.00 4.63
2194 2350 3.632145 GGAGTTACCATGCATACCCTTTG 59.368 47.826 0.00 0.00 38.79 2.77
2259 2432 3.254166 TCTTTTGCTGCTTGATGACCTTC 59.746 43.478 0.00 0.00 0.00 3.46
2285 2463 9.650539 CCAAAATATAGTGATGATGTCTCTAGG 57.349 37.037 0.00 0.00 36.63 3.02
2306 2484 2.294233 GGTTCTGTTCTGATGCTTGCAA 59.706 45.455 0.00 0.00 0.00 4.08
2464 2654 8.914011 TCAGAGCTAGCAAACTATATTTCACTA 58.086 33.333 18.83 0.00 0.00 2.74
2465 2655 9.534565 CAGAGCTAGCAAACTATATTTCACTAA 57.465 33.333 18.83 0.00 0.00 2.24
2515 2705 6.763610 AGTATAGGTAGCTCAATCACTTTTGC 59.236 38.462 0.00 0.00 0.00 3.68
2525 2715 5.012239 TCAATCACTTTTGCTGCTAGGATT 58.988 37.500 0.00 5.03 0.00 3.01
2526 2716 5.477984 TCAATCACTTTTGCTGCTAGGATTT 59.522 36.000 0.00 0.00 0.00 2.17
2527 2717 6.658816 TCAATCACTTTTGCTGCTAGGATTTA 59.341 34.615 0.00 0.00 0.00 1.40
2533 2723 9.884465 CACTTTTGCTGCTAGGATTTATATTAC 57.116 33.333 0.00 0.00 0.00 1.89
2552 2742 8.743636 ATATTACCTAGTTCCTTTCAGGCTAT 57.256 34.615 0.00 0.00 34.61 2.97
2556 3413 6.552932 ACCTAGTTCCTTTCAGGCTATTTTT 58.447 36.000 0.00 0.00 34.61 1.94
2600 3457 7.012327 TCTGAATAGTCTTGGTCACTTTTGTTG 59.988 37.037 0.00 0.00 0.00 3.33
2610 3467 5.221224 TGGTCACTTTTGTTGCTAGGATTTG 60.221 40.000 0.00 0.00 0.00 2.32
2618 3475 3.056678 TGTTGCTAGGATTTGTTGGCATG 60.057 43.478 0.00 0.00 0.00 4.06
2698 3560 8.870075 AAGTTATCTCTTTGGACAAGCTAATT 57.130 30.769 0.00 0.00 0.00 1.40
2718 3580 8.186821 GCTAATTGTCTAAGTTTGCATCTTCAT 58.813 33.333 7.73 0.00 0.00 2.57
2793 3671 5.972935 AGGTCTGGTTTTGTTTACCTTTTG 58.027 37.500 0.00 0.00 33.59 2.44
2805 3683 6.607689 TGTTTACCTTTTGCTCATATTGTCG 58.392 36.000 0.00 0.00 0.00 4.35
2806 3684 6.428465 TGTTTACCTTTTGCTCATATTGTCGA 59.572 34.615 0.00 0.00 0.00 4.20
2809 3687 6.515272 ACCTTTTGCTCATATTGTCGAAAT 57.485 33.333 0.00 0.00 0.00 2.17
2812 3701 6.470235 CCTTTTGCTCATATTGTCGAAATGTC 59.530 38.462 0.00 0.00 0.00 3.06
2814 3703 7.841915 TTTGCTCATATTGTCGAAATGTCTA 57.158 32.000 0.00 0.00 0.00 2.59
2827 3716 8.015087 TGTCGAAATGTCTATTTTTAACTGCAG 58.985 33.333 13.48 13.48 36.66 4.41
2869 3773 1.526887 CGCCTCGTATATGTTTGGCTG 59.473 52.381 17.41 11.03 38.33 4.85
2883 3787 4.629200 TGTTTGGCTGTTTGTTGAAATGTC 59.371 37.500 0.00 0.00 0.00 3.06
2888 3792 3.857093 GCTGTTTGTTGAAATGTCGTTGT 59.143 39.130 0.00 0.00 0.00 3.32
2944 3857 1.073284 GGTGGTGGAGCTGGTCTTTTA 59.927 52.381 6.83 0.00 0.00 1.52
2949 3862 2.808543 GTGGAGCTGGTCTTTTACACAG 59.191 50.000 6.83 0.00 32.55 3.66
2976 3889 6.713903 ACATAAGATGATTGCCCTGTTAGATG 59.286 38.462 0.00 0.00 0.00 2.90
2997 3911 4.646572 TGTGCATTGTGATGTACTGGTTA 58.353 39.130 8.63 0.00 45.64 2.85
2999 3913 5.049060 TGTGCATTGTGATGTACTGGTTAAC 60.049 40.000 0.00 0.00 45.64 2.01
3016 3930 6.786122 TGGTTAACCAGGTAAGCTTATCTTT 58.214 36.000 23.69 12.01 42.01 2.52
3019 3933 9.404848 GGTTAACCAGGTAAGCTTATCTTTTAT 57.595 33.333 16.83 6.45 34.58 1.40
3038 3952 8.395605 TCTTTTATATGAAGGTTGGGGTAGTTT 58.604 33.333 0.00 0.00 0.00 2.66
3044 3961 3.690475 AGGTTGGGGTAGTTTAACTCG 57.310 47.619 0.00 0.00 0.00 4.18
3090 4007 8.319146 TCCCTTTTACTACCATTTCTCAAGTAG 58.681 37.037 0.00 0.00 38.50 2.57
3091 4008 8.101419 CCCTTTTACTACCATTTCTCAAGTAGT 58.899 37.037 6.86 6.86 45.48 2.73
3100 4017 7.963532 ACCATTTCTCAAGTAGTACAAGAGAA 58.036 34.615 22.98 22.98 37.99 2.87
3105 4022 7.441890 TCTCAAGTAGTACAAGAGAAGAGTG 57.558 40.000 17.39 0.00 30.82 3.51
3109 4026 8.861086 TCAAGTAGTACAAGAGAAGAGTGAAAT 58.139 33.333 2.52 0.00 0.00 2.17
3136 4053 8.732746 TTTTCTCTACAACTCTTTGCTTAGTT 57.267 30.769 0.00 0.00 36.00 2.24
3147 4064 2.065899 TGCTTAGTTTGTTGCCCACT 57.934 45.000 0.00 0.00 0.00 4.00
3150 4067 2.558359 GCTTAGTTTGTTGCCCACTCAT 59.442 45.455 0.00 0.00 0.00 2.90
3158 4075 2.124403 GCCCACTCATCTGGCCAG 60.124 66.667 27.87 27.87 39.30 4.85
3159 4076 2.976490 GCCCACTCATCTGGCCAGT 61.976 63.158 31.58 16.68 39.30 4.00
3161 4078 0.467384 CCCACTCATCTGGCCAGTAG 59.533 60.000 31.58 26.27 0.00 2.57
3162 4079 0.179062 CCACTCATCTGGCCAGTAGC 60.179 60.000 31.58 0.00 42.60 3.58
3163 4080 0.538584 CACTCATCTGGCCAGTAGCA 59.461 55.000 31.58 13.76 46.50 3.49
3165 4082 1.140452 ACTCATCTGGCCAGTAGCATG 59.860 52.381 31.58 25.58 46.50 4.06
3167 4084 2.366590 CTCATCTGGCCAGTAGCATGTA 59.633 50.000 31.58 10.93 46.50 2.29
3168 4085 2.366590 TCATCTGGCCAGTAGCATGTAG 59.633 50.000 31.58 12.00 46.50 2.74
3217 5293 3.266772 TGTGGGCAGTCTTATTTCTCCAT 59.733 43.478 0.00 0.00 0.00 3.41
3279 5357 5.047306 CAGATGATCAAAATGGCATGGCTAT 60.047 40.000 21.08 9.39 0.00 2.97
3294 5372 6.318900 GGCATGGCTATATTCACCCTAAATAC 59.681 42.308 12.86 0.00 0.00 1.89
3319 5397 4.645956 CTTTCATCATGAACTGCGTCTTC 58.354 43.478 0.00 0.00 35.89 2.87
3465 9052 5.740290 TTTGTTACCAACTAGCTAGCTCT 57.260 39.130 23.26 4.54 0.00 4.09
3525 9150 6.969366 TGCCCATGATAACAAAGAATATTCG 58.031 36.000 9.78 0.00 0.00 3.34
3527 9152 7.078228 GCCCATGATAACAAAGAATATTCGAC 58.922 38.462 9.78 0.00 0.00 4.20
3565 9196 1.683319 GGCTGTTCAGAATTCCCCTCC 60.683 57.143 0.65 0.00 0.00 4.30
3580 9211 5.283876 TCCCCTCCAATGGACTTATTTTT 57.716 39.130 0.00 0.00 0.00 1.94
3581 9212 5.022787 TCCCCTCCAATGGACTTATTTTTG 58.977 41.667 0.00 0.00 0.00 2.44
3602 9233 5.609533 TGACCACTAATACTTTAGCCTCC 57.390 43.478 0.00 0.00 38.74 4.30
3609 9240 7.147707 CCACTAATACTTTAGCCTCCACTAAGT 60.148 40.741 0.00 0.00 38.74 2.24
3645 9286 3.065371 GGTGACATTAGAATTTCCTGGCG 59.935 47.826 0.00 0.00 0.00 5.69
3666 9307 4.260375 GCGTGCCACTATTCTACAAATCAG 60.260 45.833 0.00 0.00 0.00 2.90
3717 9358 2.214376 TTGTGTTAATGCTGAGGGGG 57.786 50.000 0.00 0.00 0.00 5.40
3718 9359 0.323360 TGTGTTAATGCTGAGGGGGC 60.323 55.000 0.00 0.00 0.00 5.80
3720 9361 1.823899 GTTAATGCTGAGGGGGCCG 60.824 63.158 0.00 0.00 0.00 6.13
3726 9367 2.361230 CTGAGGGGGCCGAAAACC 60.361 66.667 0.00 0.00 0.00 3.27
3790 9438 8.149973 ACGTTTACTGTTTGAGTCATACAAAT 57.850 30.769 15.86 10.39 39.01 2.32
3828 9476 6.435428 ACTTTAACAGCTTTTACGTCAATGG 58.565 36.000 0.00 0.00 0.00 3.16
3830 9478 2.504367 ACAGCTTTTACGTCAATGGCT 58.496 42.857 0.00 0.00 0.00 4.75
3863 9522 6.713762 TGGTTTGACTGATGAAACTGATTT 57.286 33.333 0.00 0.00 33.41 2.17
3879 9538 5.281314 ACTGATTTCTCCACAGGTACCTAT 58.719 41.667 15.80 0.00 36.17 2.57
3893 9552 7.387948 CACAGGTACCTATAATTACATTCTGGC 59.612 40.741 15.80 0.00 0.00 4.85
3920 9579 2.151202 TCTGCGGAAGTGGATTTGTTC 58.849 47.619 0.00 0.00 0.00 3.18
3943 9602 2.769095 GCTCTAGGTCCTTCCATTCTGT 59.231 50.000 0.00 0.00 39.02 3.41
3954 9613 2.358957 TCCATTCTGTATGCTGTGCAC 58.641 47.619 10.75 10.75 43.04 4.57
3955 9614 1.063027 CCATTCTGTATGCTGTGCACG 59.937 52.381 13.13 8.32 43.04 5.34
3956 9615 1.733912 CATTCTGTATGCTGTGCACGT 59.266 47.619 13.13 0.62 43.04 4.49
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 2.726822 AAAACAGGCCGTCCGGAGAC 62.727 60.000 3.06 0.00 39.83 3.36
5 6 2.047213 AAAAACAGGCCGTCCGGAGA 62.047 55.000 3.06 0.00 37.50 3.71
6 7 1.599797 AAAAACAGGCCGTCCGGAG 60.600 57.895 3.06 0.00 37.50 4.63
7 8 2.511900 AAAAACAGGCCGTCCGGA 59.488 55.556 10.46 0.00 37.50 5.14
250 278 8.655092 TCATGAATAATTTTTGAATTGGCGAAC 58.345 29.630 0.00 0.00 0.00 3.95
300 329 7.692908 ATTTTGTAGGTCACGAACAATTTTG 57.307 32.000 0.00 0.00 33.44 2.44
427 461 6.212955 CGAACATGTTTTAGGAAATTGGTGT 58.787 36.000 13.36 0.00 0.00 4.16
439 473 4.926832 TCTCGAATCTGCGAACATGTTTTA 59.073 37.500 13.36 1.57 40.13 1.52
444 478 3.997319 TTTCTCGAATCTGCGAACATG 57.003 42.857 0.00 0.00 40.13 3.21
452 486 8.668353 TGAATAGGAAAACATTTCTCGAATCTG 58.332 33.333 3.16 0.00 0.00 2.90
453 487 8.792830 TGAATAGGAAAACATTTCTCGAATCT 57.207 30.769 3.16 0.00 0.00 2.40
482 516 9.965748 ATTGTGAACGTTTTTCTTAAACAATTG 57.034 25.926 0.46 3.24 0.00 2.32
616 654 3.392769 TTTTTCAACTCGTGACCGTTG 57.607 42.857 6.18 6.18 41.30 4.10
644 699 5.757808 TCACTCTCAATTTCGTGAAATCACA 59.242 36.000 13.51 0.00 46.75 3.58
645 700 6.228273 TCACTCTCAATTTCGTGAAATCAC 57.772 37.500 8.19 3.43 39.88 3.06
712 767 6.316890 GCAACGGGAAACTAAATCATAACCTA 59.683 38.462 0.00 0.00 0.00 3.08
739 802 2.985539 TAGCAAAAGGGCCCGTGCAA 62.986 55.000 35.08 13.02 39.50 4.08
764 827 9.790344 ATGAGAGTTTCATTCCATAATTAGAGG 57.210 33.333 0.00 1.24 44.14 3.69
771 834 9.060347 GCAGAATATGAGAGTTTCATTCCATAA 57.940 33.333 0.88 0.00 44.14 1.90
772 835 7.386025 CGCAGAATATGAGAGTTTCATTCCATA 59.614 37.037 0.88 0.00 44.14 2.74
773 836 6.204301 CGCAGAATATGAGAGTTTCATTCCAT 59.796 38.462 0.88 0.00 44.14 3.41
774 837 5.525012 CGCAGAATATGAGAGTTTCATTCCA 59.475 40.000 0.88 0.00 44.14 3.53
775 838 5.559799 GCGCAGAATATGAGAGTTTCATTCC 60.560 44.000 0.30 0.00 44.14 3.01
776 839 5.007039 TGCGCAGAATATGAGAGTTTCATTC 59.993 40.000 5.66 0.00 44.14 2.67
777 840 4.877823 TGCGCAGAATATGAGAGTTTCATT 59.122 37.500 5.66 0.00 44.14 2.57
778 841 5.683249 TCTGCGCAGAATATGAGAGTTTCAT 60.683 40.000 36.62 1.31 40.99 2.57
779 842 3.860641 TGCGCAGAATATGAGAGTTTCA 58.139 40.909 5.66 0.00 40.85 2.69
780 843 4.115516 TCTGCGCAGAATATGAGAGTTTC 58.884 43.478 36.62 0.00 33.91 2.78
781 844 4.128925 TCTGCGCAGAATATGAGAGTTT 57.871 40.909 36.62 0.00 33.91 2.66
782 845 3.808466 TCTGCGCAGAATATGAGAGTT 57.192 42.857 36.62 0.00 33.91 3.01
783 846 3.808466 TTCTGCGCAGAATATGAGAGT 57.192 42.857 41.19 0.00 42.06 3.24
784 847 5.475273 TTTTTCTGCGCAGAATATGAGAG 57.525 39.130 43.57 16.01 45.78 3.20
803 866 4.403113 ACCGGCCCGTTTTCATATATTTTT 59.597 37.500 0.00 0.00 0.00 1.94
804 867 3.955551 ACCGGCCCGTTTTCATATATTTT 59.044 39.130 0.00 0.00 0.00 1.82
805 868 3.316868 CACCGGCCCGTTTTCATATATTT 59.683 43.478 0.00 0.00 0.00 1.40
806 869 2.882137 CACCGGCCCGTTTTCATATATT 59.118 45.455 0.00 0.00 0.00 1.28
807 870 2.500229 CACCGGCCCGTTTTCATATAT 58.500 47.619 0.00 0.00 0.00 0.86
808 871 1.475392 CCACCGGCCCGTTTTCATATA 60.475 52.381 0.00 0.00 0.00 0.86
809 872 0.750182 CCACCGGCCCGTTTTCATAT 60.750 55.000 0.00 0.00 0.00 1.78
810 873 1.377463 CCACCGGCCCGTTTTCATA 60.377 57.895 0.00 0.00 0.00 2.15
811 874 2.493273 ATCCACCGGCCCGTTTTCAT 62.493 55.000 0.00 0.00 0.00 2.57
812 875 3.198953 ATCCACCGGCCCGTTTTCA 62.199 57.895 0.00 0.00 0.00 2.69
813 876 2.360726 ATCCACCGGCCCGTTTTC 60.361 61.111 0.00 0.00 0.00 2.29
814 877 2.360726 GATCCACCGGCCCGTTTT 60.361 61.111 0.00 0.00 0.00 2.43
815 878 3.198953 TTGATCCACCGGCCCGTTT 62.199 57.895 0.00 0.00 0.00 3.60
816 879 3.642503 TTGATCCACCGGCCCGTT 61.643 61.111 0.00 0.00 0.00 4.44
817 880 4.404098 GTTGATCCACCGGCCCGT 62.404 66.667 0.00 0.00 0.00 5.28
818 881 2.246761 TAAGTTGATCCACCGGCCCG 62.247 60.000 0.00 0.00 0.00 6.13
819 882 0.182775 ATAAGTTGATCCACCGGCCC 59.817 55.000 0.00 0.00 0.00 5.80
820 883 2.052782 AATAAGTTGATCCACCGGCC 57.947 50.000 0.00 0.00 0.00 6.13
821 884 3.192633 ACAAAATAAGTTGATCCACCGGC 59.807 43.478 0.00 0.00 32.59 6.13
822 885 5.385509 AACAAAATAAGTTGATCCACCGG 57.614 39.130 0.00 0.00 32.59 5.28
823 886 8.458843 AGAATAACAAAATAAGTTGATCCACCG 58.541 33.333 0.00 0.00 32.59 4.94
844 907 9.760077 GACGATGGATTTCCTAACTAAAGAATA 57.240 33.333 0.00 0.00 36.82 1.75
845 908 7.438459 CGACGATGGATTTCCTAACTAAAGAAT 59.562 37.037 0.00 0.00 36.82 2.40
846 909 6.755141 CGACGATGGATTTCCTAACTAAAGAA 59.245 38.462 0.00 0.00 36.82 2.52
847 910 6.127535 ACGACGATGGATTTCCTAACTAAAGA 60.128 38.462 0.00 0.00 36.82 2.52
848 911 6.019801 CACGACGATGGATTTCCTAACTAAAG 60.020 42.308 0.00 0.00 36.82 1.85
849 912 5.808540 CACGACGATGGATTTCCTAACTAAA 59.191 40.000 0.00 0.00 36.82 1.85
850 913 5.345702 CACGACGATGGATTTCCTAACTAA 58.654 41.667 0.00 0.00 36.82 2.24
851 914 4.202080 CCACGACGATGGATTTCCTAACTA 60.202 45.833 0.00 0.00 43.02 2.24
852 915 3.430374 CCACGACGATGGATTTCCTAACT 60.430 47.826 0.00 0.00 43.02 2.24
853 916 2.864343 CCACGACGATGGATTTCCTAAC 59.136 50.000 0.00 0.00 43.02 2.34
854 917 2.740580 GCCACGACGATGGATTTCCTAA 60.741 50.000 17.18 0.00 43.02 2.69
855 918 1.202486 GCCACGACGATGGATTTCCTA 60.202 52.381 17.18 0.00 43.02 2.94
856 919 0.462047 GCCACGACGATGGATTTCCT 60.462 55.000 17.18 0.00 43.02 3.36
857 920 0.462047 AGCCACGACGATGGATTTCC 60.462 55.000 17.18 0.00 43.02 3.13
858 921 1.369625 AAGCCACGACGATGGATTTC 58.630 50.000 17.18 3.30 46.15 2.17
859 922 3.551259 AAGCCACGACGATGGATTT 57.449 47.368 17.18 9.45 46.15 2.17
861 924 1.338674 TGAAAAGCCACGACGATGGAT 60.339 47.619 17.18 10.17 43.02 3.41
862 925 0.034198 TGAAAAGCCACGACGATGGA 59.966 50.000 17.18 0.00 43.02 3.41
863 926 0.165944 GTGAAAAGCCACGACGATGG 59.834 55.000 0.00 6.98 43.26 3.51
864 927 3.657537 GTGAAAAGCCACGACGATG 57.342 52.632 0.00 0.00 0.00 3.84
874 937 2.050077 GTGCAGGCCGTGAAAAGC 60.050 61.111 0.00 0.00 0.00 3.51
875 938 1.283793 CAGTGCAGGCCGTGAAAAG 59.716 57.895 0.00 0.00 0.00 2.27
876 939 2.844451 GCAGTGCAGGCCGTGAAAA 61.844 57.895 11.09 0.00 0.00 2.29
877 940 3.286751 GCAGTGCAGGCCGTGAAA 61.287 61.111 11.09 0.00 0.00 2.69
882 945 4.389576 GAAACGCAGTGCAGGCCG 62.390 66.667 16.83 0.09 45.00 6.13
883 946 2.146073 AATGAAACGCAGTGCAGGCC 62.146 55.000 16.83 0.00 45.00 5.19
884 947 0.730494 GAATGAAACGCAGTGCAGGC 60.730 55.000 16.83 1.57 45.00 4.85
885 948 0.592637 TGAATGAAACGCAGTGCAGG 59.407 50.000 16.83 1.74 45.00 4.85
886 949 1.265095 AGTGAATGAAACGCAGTGCAG 59.735 47.619 16.83 10.53 45.00 4.41
887 950 1.308047 AGTGAATGAAACGCAGTGCA 58.692 45.000 16.83 0.00 45.00 4.57
888 951 2.480419 AGTAGTGAATGAAACGCAGTGC 59.520 45.455 4.58 4.58 45.00 4.40
889 952 3.123621 GGAGTAGTGAATGAAACGCAGTG 59.876 47.826 0.00 0.00 45.00 3.66
891 954 3.589988 AGGAGTAGTGAATGAAACGCAG 58.410 45.455 0.00 0.00 0.00 5.18
892 955 3.006430 TGAGGAGTAGTGAATGAAACGCA 59.994 43.478 0.00 0.00 0.00 5.24
893 956 3.585862 TGAGGAGTAGTGAATGAAACGC 58.414 45.455 0.00 0.00 0.00 4.84
894 957 3.614616 GCTGAGGAGTAGTGAATGAAACG 59.385 47.826 0.00 0.00 0.00 3.60
895 958 3.935828 GGCTGAGGAGTAGTGAATGAAAC 59.064 47.826 0.00 0.00 0.00 2.78
896 959 3.055094 GGGCTGAGGAGTAGTGAATGAAA 60.055 47.826 0.00 0.00 0.00 2.69
897 960 2.501723 GGGCTGAGGAGTAGTGAATGAA 59.498 50.000 0.00 0.00 0.00 2.57
898 961 2.111384 GGGCTGAGGAGTAGTGAATGA 58.889 52.381 0.00 0.00 0.00 2.57
899 962 1.833630 TGGGCTGAGGAGTAGTGAATG 59.166 52.381 0.00 0.00 0.00 2.67
900 963 1.834263 GTGGGCTGAGGAGTAGTGAAT 59.166 52.381 0.00 0.00 0.00 2.57
901 964 1.267121 GTGGGCTGAGGAGTAGTGAA 58.733 55.000 0.00 0.00 0.00 3.18
902 965 0.614979 GGTGGGCTGAGGAGTAGTGA 60.615 60.000 0.00 0.00 0.00 3.41
903 966 0.904865 TGGTGGGCTGAGGAGTAGTG 60.905 60.000 0.00 0.00 0.00 2.74
904 967 0.616111 CTGGTGGGCTGAGGAGTAGT 60.616 60.000 0.00 0.00 0.00 2.73
905 968 0.324738 TCTGGTGGGCTGAGGAGTAG 60.325 60.000 0.00 0.00 0.00 2.57
906 969 0.324738 CTCTGGTGGGCTGAGGAGTA 60.325 60.000 0.00 0.00 0.00 2.59
907 970 1.611851 CTCTGGTGGGCTGAGGAGT 60.612 63.158 0.00 0.00 0.00 3.85
908 971 1.305633 TCTCTGGTGGGCTGAGGAG 60.306 63.158 0.00 0.00 0.00 3.69
909 972 1.610673 GTCTCTGGTGGGCTGAGGA 60.611 63.158 0.00 0.00 0.00 3.71
910 973 1.915266 TGTCTCTGGTGGGCTGAGG 60.915 63.158 0.00 0.00 0.00 3.86
911 974 1.294780 GTGTCTCTGGTGGGCTGAG 59.705 63.158 0.00 0.00 0.00 3.35
912 975 2.217038 GGTGTCTCTGGTGGGCTGA 61.217 63.158 0.00 0.00 0.00 4.26
913 976 2.348998 GGTGTCTCTGGTGGGCTG 59.651 66.667 0.00 0.00 0.00 4.85
914 977 2.930562 GGGTGTCTCTGGTGGGCT 60.931 66.667 0.00 0.00 0.00 5.19
915 978 4.035102 GGGGTGTCTCTGGTGGGC 62.035 72.222 0.00 0.00 0.00 5.36
916 979 3.706373 CGGGGTGTCTCTGGTGGG 61.706 72.222 0.00 0.00 0.00 4.61
917 980 3.706373 CCGGGGTGTCTCTGGTGG 61.706 72.222 0.00 0.00 0.00 4.61
918 981 2.603473 TCCGGGGTGTCTCTGGTG 60.603 66.667 0.00 0.00 32.62 4.17
919 982 2.283966 CTCCGGGGTGTCTCTGGT 60.284 66.667 0.00 0.00 32.62 4.00
920 983 3.077556 CCTCCGGGGTGTCTCTGG 61.078 72.222 0.00 0.00 0.00 3.86
921 984 3.775654 GCCTCCGGGGTGTCTCTG 61.776 72.222 0.00 0.00 37.43 3.35
940 1003 2.126346 GTTGATTGGTGCGGCTGC 60.126 61.111 11.65 11.65 43.20 5.25
941 1004 1.210931 CTGTTGATTGGTGCGGCTG 59.789 57.895 0.00 0.00 0.00 4.85
942 1005 0.823356 AACTGTTGATTGGTGCGGCT 60.823 50.000 0.00 0.00 0.00 5.52
943 1006 0.387239 GAACTGTTGATTGGTGCGGC 60.387 55.000 0.00 0.00 0.00 6.53
944 1007 0.950836 TGAACTGTTGATTGGTGCGG 59.049 50.000 0.00 0.00 0.00 5.69
945 1008 1.872952 TCTGAACTGTTGATTGGTGCG 59.127 47.619 0.00 0.00 0.00 5.34
946 1009 3.425359 CGATCTGAACTGTTGATTGGTGC 60.425 47.826 0.00 0.00 0.00 5.01
947 1010 3.996363 TCGATCTGAACTGTTGATTGGTG 59.004 43.478 0.00 0.00 0.00 4.17
948 1011 4.021104 TCTCGATCTGAACTGTTGATTGGT 60.021 41.667 0.00 0.00 0.00 3.67
949 1012 4.498241 TCTCGATCTGAACTGTTGATTGG 58.502 43.478 0.00 0.00 0.00 3.16
950 1013 5.233902 GGATCTCGATCTGAACTGTTGATTG 59.766 44.000 0.00 0.00 37.92 2.67
951 1014 5.355596 GGATCTCGATCTGAACTGTTGATT 58.644 41.667 0.00 0.00 37.92 2.57
952 1015 4.202202 GGGATCTCGATCTGAACTGTTGAT 60.202 45.833 0.00 0.00 37.92 2.57
953 1016 3.131223 GGGATCTCGATCTGAACTGTTGA 59.869 47.826 0.00 0.00 37.92 3.18
954 1017 3.452474 GGGATCTCGATCTGAACTGTTG 58.548 50.000 0.00 0.00 37.92 3.33
955 1018 2.099921 CGGGATCTCGATCTGAACTGTT 59.900 50.000 10.16 0.00 37.92 3.16
956 1019 1.678627 CGGGATCTCGATCTGAACTGT 59.321 52.381 10.16 0.00 37.92 3.55
957 1020 1.678627 ACGGGATCTCGATCTGAACTG 59.321 52.381 24.50 0.00 37.92 3.16
958 1021 1.950909 GACGGGATCTCGATCTGAACT 59.049 52.381 24.50 0.00 37.92 3.01
959 1022 1.334239 CGACGGGATCTCGATCTGAAC 60.334 57.143 24.50 2.96 37.92 3.18
960 1023 0.945099 CGACGGGATCTCGATCTGAA 59.055 55.000 24.50 0.00 37.92 3.02
961 1024 1.507974 GCGACGGGATCTCGATCTGA 61.508 60.000 24.50 0.00 37.92 3.27
962 1025 1.081774 GCGACGGGATCTCGATCTG 60.082 63.158 24.50 8.99 37.92 2.90
963 1026 1.511318 CTGCGACGGGATCTCGATCT 61.511 60.000 24.50 0.00 37.92 2.75
964 1027 1.081774 CTGCGACGGGATCTCGATC 60.082 63.158 24.50 14.21 37.11 3.69
965 1028 1.824329 ACTGCGACGGGATCTCGAT 60.824 57.895 24.50 5.81 32.65 3.59
966 1029 2.437895 ACTGCGACGGGATCTCGA 60.438 61.111 24.50 0.00 32.65 4.04
967 1030 2.278206 CACTGCGACGGGATCTCG 60.278 66.667 14.88 14.88 0.00 4.04
968 1031 1.064946 CTCACTGCGACGGGATCTC 59.935 63.158 0.00 0.00 0.00 2.75
969 1032 1.679305 ACTCACTGCGACGGGATCT 60.679 57.895 0.00 0.00 0.00 2.75
970 1033 1.517257 CACTCACTGCGACGGGATC 60.517 63.158 0.00 0.00 0.00 3.36
971 1034 1.938657 CTCACTCACTGCGACGGGAT 61.939 60.000 0.00 0.00 0.00 3.85
972 1035 2.596338 TCACTCACTGCGACGGGA 60.596 61.111 0.00 0.00 0.00 5.14
973 1036 1.583495 TACTCACTCACTGCGACGGG 61.583 60.000 0.00 0.00 0.00 5.28
974 1037 0.179187 CTACTCACTCACTGCGACGG 60.179 60.000 0.00 0.00 0.00 4.79
975 1038 0.179187 CCTACTCACTCACTGCGACG 60.179 60.000 0.00 0.00 0.00 5.12
976 1039 0.171455 CCCTACTCACTCACTGCGAC 59.829 60.000 0.00 0.00 0.00 5.19
977 1040 1.595993 GCCCTACTCACTCACTGCGA 61.596 60.000 0.00 0.00 0.00 5.10
978 1041 1.153745 GCCCTACTCACTCACTGCG 60.154 63.158 0.00 0.00 0.00 5.18
979 1042 1.153745 CGCCCTACTCACTCACTGC 60.154 63.158 0.00 0.00 0.00 4.40
1195 1270 1.904144 TTGTATTCGACGCGGAAGAG 58.096 50.000 12.47 0.00 0.00 2.85
1211 1286 2.227089 GAGCTCGACGTGGGGATTGT 62.227 60.000 0.00 0.00 0.00 2.71
1212 1287 1.519455 GAGCTCGACGTGGGGATTG 60.519 63.158 0.00 0.00 0.00 2.67
1214 1289 3.148279 GGAGCTCGACGTGGGGAT 61.148 66.667 7.83 0.00 0.00 3.85
1250 1325 0.657840 CGAGATTCGATTTGGGGCAC 59.342 55.000 0.00 0.00 43.74 5.01
1251 1326 1.095228 GCGAGATTCGATTTGGGGCA 61.095 55.000 2.20 0.00 43.74 5.36
1291 1366 3.202706 GCCGGCATCCTCGTTTCC 61.203 66.667 24.80 0.00 0.00 3.13
1293 1368 1.745489 GAAGCCGGCATCCTCGTTT 60.745 57.895 31.54 11.63 0.00 3.60
1304 1382 1.759459 GAGGGGATGGTAGAAGCCGG 61.759 65.000 0.00 0.00 0.00 6.13
1354 1435 1.160329 ACCTGCTTCTGCGTTGTGTC 61.160 55.000 0.00 0.00 43.34 3.67
1432 1518 4.324267 CTGGGTAGGGTTCTAACAAGTTG 58.676 47.826 0.00 0.00 34.92 3.16
1435 1527 2.677037 CGCTGGGTAGGGTTCTAACAAG 60.677 54.545 0.00 0.00 37.30 3.16
1517 1615 2.964464 TGTGCAATTTGTTCCTCACCAT 59.036 40.909 0.00 0.00 0.00 3.55
1547 1651 3.375299 AGTTTCCGATGAGTAAATGCAGC 59.625 43.478 0.00 0.00 0.00 5.25
1552 1656 3.689649 GCACCAGTTTCCGATGAGTAAAT 59.310 43.478 0.00 0.00 0.00 1.40
1560 1664 1.671054 CCACGCACCAGTTTCCGAT 60.671 57.895 0.00 0.00 0.00 4.18
1597 1701 4.217767 CACGATATCCTTGGATCTAACCGA 59.782 45.833 5.30 0.00 0.00 4.69
1600 1704 4.021016 AGCCACGATATCCTTGGATCTAAC 60.021 45.833 18.37 3.61 31.39 2.34
1603 1707 2.614259 AGCCACGATATCCTTGGATCT 58.386 47.619 18.37 7.09 31.39 2.75
1604 1708 3.007398 AGAAGCCACGATATCCTTGGATC 59.993 47.826 18.37 14.88 31.39 3.36
1615 1719 3.931578 GCTTATCCATAGAAGCCACGAT 58.068 45.455 0.00 0.00 42.83 3.73
1616 1738 3.386768 GCTTATCCATAGAAGCCACGA 57.613 47.619 0.00 0.00 42.83 4.35
1632 1769 0.890542 CAACCAGCACAGCAGGCTTA 60.891 55.000 0.00 0.00 38.85 3.09
1675 1812 3.813443 ACTCAAGAATTCCATCGGGATG 58.187 45.455 0.65 1.62 44.48 3.51
1678 1815 4.009675 TCAAACTCAAGAATTCCATCGGG 58.990 43.478 0.65 0.00 0.00 5.14
1679 1816 5.587844 AGATCAAACTCAAGAATTCCATCGG 59.412 40.000 0.65 0.00 0.00 4.18
1680 1817 6.674694 AGATCAAACTCAAGAATTCCATCG 57.325 37.500 0.65 0.00 0.00 3.84
1710 1853 7.201920 GGCAAAGGTATCACAGATAGTCTCTTA 60.202 40.741 0.00 0.00 29.16 2.10
1732 1875 2.302445 CCAAATCCAATTCCACAGGCAA 59.698 45.455 0.00 0.00 0.00 4.52
1743 1886 1.822990 CTGCTGCTCACCAAATCCAAT 59.177 47.619 0.00 0.00 0.00 3.16
1752 1895 3.503748 AGAACAATAAACTGCTGCTCACC 59.496 43.478 0.00 0.00 0.00 4.02
1767 1910 4.161565 TCTGCCCGTATAACTGAGAACAAT 59.838 41.667 0.00 0.00 0.00 2.71
1813 1956 3.318839 TGGGCATTGAAGTCTGACAAAAG 59.681 43.478 10.88 0.38 0.00 2.27
1843 1992 1.546961 TCAGAACCGGTCTTCCTCTC 58.453 55.000 8.04 0.00 32.70 3.20
1856 2005 4.396166 CCCATGAAGTAACACCATCAGAAC 59.604 45.833 0.00 0.00 0.00 3.01
1908 2057 2.693591 TGCGTAATCCAGAGGAAGTAGG 59.306 50.000 0.00 0.00 34.34 3.18
1946 2095 2.225727 TCGGCATACGCTAGTATCACTG 59.774 50.000 0.00 0.00 41.33 3.66
1991 2140 1.344065 ACCACGGTGACCAACATCTA 58.656 50.000 10.28 0.00 0.00 1.98
2120 2272 4.955925 TTTACACCCATGATGTAAAGCG 57.044 40.909 21.73 1.53 43.95 4.68
2144 2300 9.075519 TCAATCAATTATCGAAAATCAACTTGC 57.924 29.630 0.00 0.00 0.00 4.01
2259 2432 9.650539 CCTAGAGACATCATCACTATATTTTGG 57.349 37.037 0.00 0.00 31.05 3.28
2285 2463 1.881973 TGCAAGCATCAGAACAGAACC 59.118 47.619 0.00 0.00 0.00 3.62
2306 2484 7.517320 TCATAATCATTACATAAGTGGTGCCT 58.483 34.615 0.00 0.00 0.00 4.75
2388 2573 1.066143 ACTGTAGGTCAATTGAGCCGG 60.066 52.381 29.09 22.19 43.11 6.13
2588 3445 5.831997 ACAAATCCTAGCAACAAAAGTGAC 58.168 37.500 0.00 0.00 0.00 3.67
2600 3457 4.660789 ATTCATGCCAACAAATCCTAGC 57.339 40.909 0.00 0.00 0.00 3.42
2645 3504 8.896744 TCAAGAATTTATTAAGCTCACTCCATG 58.103 33.333 0.00 0.00 0.00 3.66
2646 3505 9.638176 ATCAAGAATTTATTAAGCTCACTCCAT 57.362 29.630 0.00 0.00 0.00 3.41
2698 3560 9.677567 GTAAAAATGAAGATGCAAACTTAGACA 57.322 29.630 9.02 4.96 0.00 3.41
2793 3671 9.722056 AAAAATAGACATTTCGACAATATGAGC 57.278 29.630 0.00 0.00 33.09 4.26
2805 3683 8.239998 AGAGCTGCAGTTAAAAATAGACATTTC 58.760 33.333 16.64 0.00 33.09 2.17
2806 3684 8.025445 CAGAGCTGCAGTTAAAAATAGACATTT 58.975 33.333 16.64 0.00 35.84 2.32
2809 3687 6.230472 TCAGAGCTGCAGTTAAAAATAGACA 58.770 36.000 16.64 0.00 0.00 3.41
2812 3701 6.734104 ACTCAGAGCTGCAGTTAAAAATAG 57.266 37.500 16.64 5.83 0.00 1.73
2814 3703 7.693969 ATAACTCAGAGCTGCAGTTAAAAAT 57.306 32.000 16.64 0.00 37.08 1.82
2824 3713 5.120519 GCATCAAGATATAACTCAGAGCTGC 59.879 44.000 0.00 0.00 0.00 5.25
2827 3716 4.624882 CGGCATCAAGATATAACTCAGAGC 59.375 45.833 0.00 0.00 0.00 4.09
2869 3773 6.147038 ACAAACAACGACATTTCAACAAAC 57.853 33.333 0.00 0.00 0.00 2.93
2883 3787 5.059955 AGCGTAAAAAGTCAAACAAACAACG 59.940 36.000 0.00 0.00 0.00 4.10
2888 3792 4.923871 TGCAAGCGTAAAAAGTCAAACAAA 59.076 33.333 0.00 0.00 0.00 2.83
2944 3857 3.379372 GGCAATCATCTTATGTGCTGTGT 59.621 43.478 0.00 0.00 0.00 3.72
2949 3862 2.954318 ACAGGGCAATCATCTTATGTGC 59.046 45.455 0.00 0.00 0.00 4.57
2976 3889 5.390613 GTTAACCAGTACATCACAATGCAC 58.609 41.667 0.00 0.00 36.26 4.57
3016 3930 8.838741 AGTTAAACTACCCCAACCTTCATATAA 58.161 33.333 0.00 0.00 0.00 0.98
3019 3933 6.574859 CGAGTTAAACTACCCCAACCTTCATA 60.575 42.308 0.00 0.00 0.00 2.15
3023 3937 3.392285 ACGAGTTAAACTACCCCAACCTT 59.608 43.478 0.00 0.00 0.00 3.50
3044 3961 9.923143 AAAGGGAAACTAATACATTTTGCTTAC 57.077 29.630 0.00 0.00 0.00 2.34
3075 3992 7.540474 TCTCTTGTACTACTTGAGAAATGGT 57.460 36.000 0.00 0.00 31.80 3.55
3109 4026 9.998106 ACTAAGCAAAGAGTTGTAGAGAAAATA 57.002 29.630 0.00 0.00 37.06 1.40
3111 4028 8.732746 AACTAAGCAAAGAGTTGTAGAGAAAA 57.267 30.769 0.00 0.00 37.06 2.29
3136 4053 0.895100 GCCAGATGAGTGGGCAACAA 60.895 55.000 0.00 0.00 46.92 2.83
3147 4064 1.206878 ACATGCTACTGGCCAGATGA 58.793 50.000 39.19 21.27 40.92 2.92
3150 4067 0.465705 GCTACATGCTACTGGCCAGA 59.534 55.000 39.19 20.75 40.92 3.86
3161 4078 3.111853 TGCCTACACATAGCTACATGC 57.888 47.619 0.00 0.00 43.29 4.06
3162 4079 4.635223 ACATGCCTACACATAGCTACATG 58.365 43.478 12.60 12.60 37.99 3.21
3163 4080 4.963318 ACATGCCTACACATAGCTACAT 57.037 40.909 0.00 0.00 0.00 2.29
3165 4082 4.021894 AGCTACATGCCTACACATAGCTAC 60.022 45.833 8.09 0.00 44.93 3.58
3167 4084 2.968574 AGCTACATGCCTACACATAGCT 59.031 45.455 4.80 4.80 43.31 3.32
3168 4085 3.393089 AGCTACATGCCTACACATAGC 57.607 47.619 0.00 0.00 44.23 2.97
3217 5293 8.511321 GTGTTGAACATCTAACATGACCAAATA 58.489 33.333 0.00 0.00 38.84 1.40
3279 5357 8.271458 TGATGAAAGCAGTATTTAGGGTGAATA 58.729 33.333 0.00 0.00 0.00 1.75
3294 5372 2.161012 ACGCAGTTCATGATGAAAGCAG 59.839 45.455 24.19 19.86 37.78 4.24
3319 5397 5.673337 TTTTACTCTGTACAGCAGCAAAG 57.327 39.130 18.45 11.31 44.66 2.77
3372 8952 8.355913 CGTGCATCATCCTATCAGTACATATAT 58.644 37.037 0.00 0.00 0.00 0.86
3373 8953 7.556275 TCGTGCATCATCCTATCAGTACATATA 59.444 37.037 0.00 0.00 0.00 0.86
3374 8954 6.378280 TCGTGCATCATCCTATCAGTACATAT 59.622 38.462 0.00 0.00 0.00 1.78
3405 8985 3.960571 ACATGCAGTAGAAGCCTCAAAT 58.039 40.909 0.00 0.00 0.00 2.32
3406 8986 3.423539 ACATGCAGTAGAAGCCTCAAA 57.576 42.857 0.00 0.00 0.00 2.69
3450 9037 7.175816 TCAGATATGTAAGAGCTAGCTAGTTGG 59.824 40.741 19.38 0.00 0.00 3.77
3490 9077 0.402887 TCATGGGCATATGAGGGCTG 59.597 55.000 6.97 0.00 32.39 4.85
3525 9150 6.261826 ACAGCCTAGCTTATCAAATCATTGTC 59.738 38.462 0.00 0.00 36.40 3.18
3527 9152 6.630444 ACAGCCTAGCTTATCAAATCATTG 57.370 37.500 0.00 0.00 36.40 2.82
3580 9211 5.027460 TGGAGGCTAAAGTATTAGTGGTCA 58.973 41.667 0.00 0.00 40.59 4.02
3581 9212 5.128991 AGTGGAGGCTAAAGTATTAGTGGTC 59.871 44.000 0.00 0.00 40.59 4.02
3592 9223 6.877611 TTTTGAACTTAGTGGAGGCTAAAG 57.122 37.500 0.00 0.00 31.43 1.85
3602 9233 7.432252 GTCACCATCAAGTTTTTGAACTTAGTG 59.568 37.037 4.41 9.47 45.82 2.74
3609 9240 8.231692 TCTAATGTCACCATCAAGTTTTTGAA 57.768 30.769 0.00 0.00 45.82 2.69
3627 9268 2.423538 GCACGCCAGGAAATTCTAATGT 59.576 45.455 0.00 0.00 0.00 2.71
3645 9286 4.878397 AGCTGATTTGTAGAATAGTGGCAC 59.122 41.667 10.29 10.29 0.00 5.01
3666 9307 9.573133 ACAATACAAACATAAAGAAGCAATAGC 57.427 29.630 0.00 0.00 42.56 2.97
3720 9361 2.619646 TGTACCAAAAGCTCCGGTTTTC 59.380 45.455 0.00 0.00 40.52 2.29
3726 9367 1.804748 GGACTTGTACCAAAAGCTCCG 59.195 52.381 0.00 0.00 0.00 4.63
3820 9468 3.416277 CAATTTGTACGAGCCATTGACG 58.584 45.455 0.00 0.00 0.00 4.35
3821 9469 3.190535 ACCAATTTGTACGAGCCATTGAC 59.809 43.478 7.35 0.00 0.00 3.18
3823 9471 3.848272 ACCAATTTGTACGAGCCATTG 57.152 42.857 0.00 0.62 0.00 2.82
3828 9476 4.024387 TCAGTCAAACCAATTTGTACGAGC 60.024 41.667 0.00 0.00 44.76 5.03
3830 9478 5.760743 TCATCAGTCAAACCAATTTGTACGA 59.239 36.000 0.00 0.00 44.76 3.43
3863 9522 8.792830 AATGTAATTATAGGTACCTGTGGAGA 57.207 34.615 25.33 3.08 32.46 3.71
3879 9538 3.552132 TCAGCCGCCAGAATGTAATTA 57.448 42.857 0.00 0.00 36.07 1.40
3893 9552 2.169789 CACTTCCGCAGATCAGCCG 61.170 63.158 4.32 0.00 0.00 5.52
3920 9579 3.037549 AGAATGGAAGGACCTAGAGCAG 58.962 50.000 0.00 0.00 39.86 4.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.