Multiple sequence alignment - TraesCS5B01G544000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G544000 chr5B 100.000 4660 0 0 1 4660 696710030 696714689 0.000000e+00 8606.0
1 TraesCS5B01G544000 chr5B 86.576 1177 97 19 2588 3710 696521772 696520603 0.000000e+00 1242.0
2 TraesCS5B01G544000 chr5B 80.563 1492 221 54 1947 3405 696585563 696587018 0.000000e+00 1085.0
3 TraesCS5B01G544000 chr5B 82.330 1296 150 36 2449 3710 696730336 696729086 0.000000e+00 1051.0
4 TraesCS5B01G544000 chr5B 82.854 834 76 27 2935 3710 696576724 696575900 0.000000e+00 686.0
5 TraesCS5B01G544000 chr5B 80.816 907 133 26 2522 3398 697025297 697026192 0.000000e+00 673.0
6 TraesCS5B01G544000 chr5B 83.993 581 72 18 1879 2443 696522359 696521784 5.310000e-149 538.0
7 TraesCS5B01G544000 chr5B 93.182 352 16 6 883 1231 696584429 696584775 1.160000e-140 510.0
8 TraesCS5B01G544000 chr5B 90.584 308 24 4 1429 1736 696585076 696585378 2.020000e-108 403.0
9 TraesCS5B01G544000 chr5B 83.288 365 49 10 1855 2213 696577199 696576841 4.500000e-85 326.0
10 TraesCS5B01G544000 chr5B 81.643 414 47 22 1888 2290 696731330 696730935 2.710000e-82 316.0
11 TraesCS5B01G544000 chr5B 87.121 264 25 6 1459 1720 696522763 696522507 1.640000e-74 291.0
12 TraesCS5B01G544000 chr5B 88.750 240 21 2 1497 1736 696577567 696577334 5.900000e-74 289.0
13 TraesCS5B01G544000 chr5B 76.790 405 72 14 2330 2723 697025011 697025404 1.700000e-49 207.0
14 TraesCS5B01G544000 chr5B 83.803 142 21 2 2188 2327 697024832 697024973 2.930000e-27 134.0
15 TraesCS5B01G544000 chr5B 81.481 135 10 8 3721 3851 696729049 696728926 3.840000e-16 97.1
16 TraesCS5B01G544000 chr5B 90.566 53 5 0 656 708 251577506 251577558 2.330000e-08 71.3
17 TraesCS5B01G544000 chr4A 90.566 2332 145 43 1429 3710 614609822 614612128 0.000000e+00 3018.0
18 TraesCS5B01G544000 chr4A 83.789 1610 159 51 1839 3426 614447801 614446272 0.000000e+00 1434.0
19 TraesCS5B01G544000 chr4A 84.832 1490 124 39 2553 3954 614426762 614425287 0.000000e+00 1406.0
20 TraesCS5B01G544000 chr4A 88.408 1156 88 29 2588 3710 614417561 614416419 0.000000e+00 1351.0
21 TraesCS5B01G544000 chr4A 87.328 726 50 5 1 726 614608382 614609065 0.000000e+00 793.0
22 TraesCS5B01G544000 chr4A 84.165 581 72 17 1879 2443 614418149 614417573 3.170000e-151 545.0
23 TraesCS5B01G544000 chr4A 85.654 474 15 8 782 1231 614609085 614609529 2.560000e-122 449.0
24 TraesCS5B01G544000 chr4A 88.451 381 11 8 883 1231 614448876 614448497 3.330000e-116 429.0
25 TraesCS5B01G544000 chr4A 84.545 330 19 5 4053 4376 614424977 614424674 9.800000e-77 298.0
26 TraesCS5B01G544000 chr4A 82.369 363 38 10 1384 1736 614448278 614447932 4.560000e-75 292.0
27 TraesCS5B01G544000 chr4A 85.771 253 26 3 3466 3710 614446195 614445945 4.630000e-65 259.0
28 TraesCS5B01G544000 chr4A 93.333 165 11 0 4364 4528 614424643 614424479 1.300000e-60 244.0
29 TraesCS5B01G544000 chr4A 83.871 155 10 10 3706 3853 614445922 614445776 2.930000e-27 134.0
30 TraesCS5B01G544000 chr4A 81.752 137 17 6 3710 3842 614416394 614416262 1.770000e-19 108.0
31 TraesCS5B01G544000 chr4A 92.453 53 2 1 3990 4042 614425062 614425012 1.800000e-09 75.0
32 TraesCS5B01G544000 chr5D 93.604 1282 67 9 1801 3081 553880845 553879578 0.000000e+00 1899.0
33 TraesCS5B01G544000 chr5D 85.714 1533 147 36 2235 3710 553891679 553893196 0.000000e+00 1552.0
34 TraesCS5B01G544000 chr5D 90.146 548 31 5 1256 1803 553881406 553880882 0.000000e+00 691.0
35 TraesCS5B01G544000 chr5D 78.857 1102 156 42 2619 3662 553773065 553771983 0.000000e+00 673.0
36 TraesCS5B01G544000 chr5D 84.194 639 56 26 3116 3710 553879573 553878936 3.130000e-161 579.0
37 TraesCS5B01G544000 chr5D 88.201 339 14 4 918 1231 553881812 553881475 9.460000e-102 381.0
38 TraesCS5B01G544000 chr5D 89.583 240 19 2 1497 1736 553889848 553890081 2.730000e-77 300.0
39 TraesCS5B01G544000 chr5D 85.866 283 35 5 1847 2125 553890218 553890499 3.530000e-76 296.0
40 TraesCS5B01G544000 chr5D 81.752 137 17 6 3710 3842 553893221 553893353 1.770000e-19 108.0
41 TraesCS5B01G544000 chr6A 91.471 469 29 5 1335 1803 158666950 158667407 6.580000e-178 634.0
42 TraesCS5B01G544000 chr6A 92.800 375 25 2 1801 2174 158667443 158667816 4.100000e-150 542.0
43 TraesCS5B01G544000 chr2A 91.471 469 27 5 1335 1803 507020518 507020063 2.370000e-177 632.0
44 TraesCS5B01G544000 chr2A 90.192 469 35 8 1335 1803 347014201 347014658 6.670000e-168 601.0
45 TraesCS5B01G544000 chr2A 93.333 375 23 2 1801 2174 507020028 507019655 1.890000e-153 553.0
46 TraesCS5B01G544000 chr2A 90.667 375 33 2 1801 2174 347014694 347015067 9.000000e-137 497.0
47 TraesCS5B01G544000 chr2A 89.091 55 5 1 655 709 28818813 28818760 3.010000e-07 67.6
48 TraesCS5B01G544000 chr7A 92.157 51 3 1 658 707 7699707 7699757 2.330000e-08 71.3
49 TraesCS5B01G544000 chr4B 92.000 50 4 0 655 704 85643923 85643874 2.330000e-08 71.3
50 TraesCS5B01G544000 chr7B 91.837 49 4 0 655 703 219565085 219565037 8.370000e-08 69.4
51 TraesCS5B01G544000 chr6D 89.286 56 5 1 655 710 140086893 140086947 8.370000e-08 69.4
52 TraesCS5B01G544000 chr1B 93.023 43 3 0 661 703 606388218 606388176 3.890000e-06 63.9
53 TraesCS5B01G544000 chr1B 93.023 43 3 0 661 703 606393010 606392968 3.890000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G544000 chr5B 696710030 696714689 4659 False 8606.000000 8606 100.000000 1 4660 1 chr5B.!!$F2 4659
1 TraesCS5B01G544000 chr5B 696520603 696522763 2160 True 690.333333 1242 85.896667 1459 3710 3 chr5B.!!$R1 2251
2 TraesCS5B01G544000 chr5B 696584429 696587018 2589 False 666.000000 1085 88.109667 883 3405 3 chr5B.!!$F3 2522
3 TraesCS5B01G544000 chr5B 696728926 696731330 2404 True 488.033333 1051 81.818000 1888 3851 3 chr5B.!!$R3 1963
4 TraesCS5B01G544000 chr5B 696575900 696577567 1667 True 433.666667 686 84.964000 1497 3710 3 chr5B.!!$R2 2213
5 TraesCS5B01G544000 chr5B 697024832 697026192 1360 False 338.000000 673 80.469667 2188 3398 3 chr5B.!!$F4 1210
6 TraesCS5B01G544000 chr4A 614608382 614612128 3746 False 1420.000000 3018 87.849333 1 3710 3 chr4A.!!$F1 3709
7 TraesCS5B01G544000 chr4A 614416262 614418149 1887 True 668.000000 1351 84.775000 1879 3842 3 chr4A.!!$R1 1963
8 TraesCS5B01G544000 chr4A 614445776 614448876 3100 True 509.600000 1434 84.850200 883 3853 5 chr4A.!!$R3 2970
9 TraesCS5B01G544000 chr4A 614424479 614426762 2283 True 505.750000 1406 88.790750 2553 4528 4 chr4A.!!$R2 1975
10 TraesCS5B01G544000 chr5D 553878936 553881812 2876 True 887.500000 1899 89.036250 918 3710 4 chr5D.!!$R2 2792
11 TraesCS5B01G544000 chr5D 553771983 553773065 1082 True 673.000000 673 78.857000 2619 3662 1 chr5D.!!$R1 1043
12 TraesCS5B01G544000 chr5D 553889848 553893353 3505 False 564.000000 1552 85.728750 1497 3842 4 chr5D.!!$F1 2345
13 TraesCS5B01G544000 chr6A 158666950 158667816 866 False 588.000000 634 92.135500 1335 2174 2 chr6A.!!$F1 839
14 TraesCS5B01G544000 chr2A 507019655 507020518 863 True 592.500000 632 92.402000 1335 2174 2 chr2A.!!$R2 839
15 TraesCS5B01G544000 chr2A 347014201 347015067 866 False 549.000000 601 90.429500 1335 2174 2 chr2A.!!$F1 839

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
192 193 0.252197 GCCCTTATCGAACCTGGTGT 59.748 55.000 0.00 0.00 0.0 4.16 F
452 453 0.678366 TTTGTGATAATGGCGCCCGT 60.678 50.000 26.77 14.63 0.0 5.28 F
866 867 0.837940 ATTAAACCCTCTCCTCGGCC 59.162 55.000 0.00 0.00 0.0 6.13 F
1705 1872 2.141517 CTGCTCTCTGTTCAACACCAG 58.858 52.381 0.00 0.00 0.0 4.00 F
2497 4348 0.404040 TGTTTCTTTCCGGCATCCCT 59.596 50.000 0.00 0.00 0.0 4.20 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1203 1257 1.226888 GACGTACTTAGGCAGCGGG 60.227 63.158 0.00 0.00 0.00 6.13 R
2444 4232 0.981183 ACGGGCCAAGAACTACATGA 59.019 50.000 4.39 0.00 0.00 3.07 R
2475 4325 0.881118 GATGCCGGAAAGAAACAGCA 59.119 50.000 5.05 0.00 34.28 4.41 R
2899 4871 0.324943 AAAGTCACCCGTCCATCTGG 59.675 55.000 0.00 0.00 0.00 3.86 R
3965 6125 0.035317 TCCTGATGACGGGCATATGC 59.965 55.000 19.79 19.79 42.00 3.14 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
58 59 9.804758 GATACTTCTTCCGTCCCATAATATAAG 57.195 37.037 0.00 0.00 0.00 1.73
59 60 7.005709 ACTTCTTCCGTCCCATAATATAAGG 57.994 40.000 0.00 0.00 0.00 2.69
68 69 7.223387 CCGTCCCATAATATAAGGCGTTATTAC 59.777 40.741 16.20 3.45 31.04 1.89
72 73 9.052759 CCCATAATATAAGGCGTTATTACATCC 57.947 37.037 16.20 0.00 31.04 3.51
128 129 6.126863 TGTGGGATGAAGGATATATTGGAC 57.873 41.667 0.00 0.00 0.00 4.02
133 134 4.617253 TGAAGGATATATTGGACCACCG 57.383 45.455 0.00 0.00 39.42 4.94
144 145 4.771114 TTGGACCACCGATCATATTTCT 57.229 40.909 0.00 0.00 39.42 2.52
145 146 4.771114 TGGACCACCGATCATATTTCTT 57.229 40.909 0.00 0.00 39.42 2.52
146 147 4.703897 TGGACCACCGATCATATTTCTTC 58.296 43.478 0.00 0.00 39.42 2.87
192 193 0.252197 GCCCTTATCGAACCTGGTGT 59.748 55.000 0.00 0.00 0.00 4.16
211 212 3.197983 GTGTTAGAAGCTCCCACACCTAT 59.802 47.826 7.02 0.00 33.10 2.57
223 224 2.103263 CCACACCTATAGAGTCCCTTGC 59.897 54.545 0.00 0.00 0.00 4.01
256 257 1.550976 AGAGAGATCACGTTGAACCCC 59.449 52.381 0.00 0.00 0.00 4.95
273 274 3.562182 ACCCCAAACCTCTTAACACAAG 58.438 45.455 0.00 0.00 0.00 3.16
320 321 5.964958 AGAGGTCATAAACAACCACAATG 57.035 39.130 0.00 0.00 0.00 2.82
330 331 9.554724 CATAAACAACCACAATGTACTCATAAC 57.445 33.333 0.00 0.00 33.49 1.89
343 344 4.884668 ACTCATAACCGTATGTATGGGG 57.115 45.455 3.50 0.00 38.63 4.96
371 372 3.434039 GGGGGTAAAGGGGATGCA 58.566 61.111 0.00 0.00 0.00 3.96
407 408 9.661954 AAGGAAGATTAGATAAGGTATGACTGA 57.338 33.333 0.00 0.00 0.00 3.41
408 409 9.836179 AGGAAGATTAGATAAGGTATGACTGAT 57.164 33.333 0.00 0.00 0.00 2.90
417 418 9.499479 AGATAAGGTATGACTGATTAATGCTTG 57.501 33.333 0.00 0.00 0.00 4.01
418 419 9.277783 GATAAGGTATGACTGATTAATGCTTGT 57.722 33.333 0.00 0.00 0.00 3.16
419 420 7.559590 AAGGTATGACTGATTAATGCTTGTC 57.440 36.000 0.00 0.00 0.00 3.18
420 421 6.058183 AGGTATGACTGATTAATGCTTGTCC 58.942 40.000 0.00 0.00 0.00 4.02
421 422 5.239525 GGTATGACTGATTAATGCTTGTCCC 59.760 44.000 0.00 0.00 0.00 4.46
422 423 4.299586 TGACTGATTAATGCTTGTCCCA 57.700 40.909 0.00 0.00 0.00 4.37
423 424 4.858850 TGACTGATTAATGCTTGTCCCAT 58.141 39.130 0.00 0.00 0.00 4.00
424 425 4.641541 TGACTGATTAATGCTTGTCCCATG 59.358 41.667 0.00 0.00 0.00 3.66
425 426 4.603131 ACTGATTAATGCTTGTCCCATGT 58.397 39.130 0.00 0.00 0.00 3.21
426 427 4.641989 ACTGATTAATGCTTGTCCCATGTC 59.358 41.667 0.00 0.00 0.00 3.06
427 428 4.858850 TGATTAATGCTTGTCCCATGTCT 58.141 39.130 0.00 0.00 0.00 3.41
428 429 5.263599 TGATTAATGCTTGTCCCATGTCTT 58.736 37.500 0.00 0.00 0.00 3.01
452 453 0.678366 TTTGTGATAATGGCGCCCGT 60.678 50.000 26.77 14.63 0.00 5.28
456 457 3.181169 GATAATGGCGCCCGTGCAC 62.181 63.158 26.77 6.82 37.32 4.57
458 459 3.986072 TAATGGCGCCCGTGCACAT 62.986 57.895 26.77 5.51 36.59 3.21
471 472 4.380444 CCCGTGCACATTTTTAGCTATGTT 60.380 41.667 18.64 0.00 32.88 2.71
472 473 4.793216 CCGTGCACATTTTTAGCTATGTTC 59.207 41.667 18.64 0.00 32.88 3.18
475 476 6.030228 GTGCACATTTTTAGCTATGTTCCTC 58.970 40.000 13.17 0.00 32.88 3.71
491 492 4.041567 TGTTCCTCTTTATTGCACTCCTCA 59.958 41.667 0.00 0.00 0.00 3.86
526 527 2.580322 TCCATCTATCCAACTTTGCCCA 59.420 45.455 0.00 0.00 0.00 5.36
527 528 2.689983 CCATCTATCCAACTTTGCCCAC 59.310 50.000 0.00 0.00 0.00 4.61
533 534 1.463553 CCAACTTTGCCCACTGACCC 61.464 60.000 0.00 0.00 0.00 4.46
544 545 2.427506 CCACTGACCCTAGTTTTGCTC 58.572 52.381 0.00 0.00 0.00 4.26
545 546 2.427506 CACTGACCCTAGTTTTGCTCC 58.572 52.381 0.00 0.00 0.00 4.70
554 555 2.438868 AGTTTTGCTCCGATTTTGCC 57.561 45.000 0.00 0.00 0.00 4.52
564 565 1.058979 CCGATTTTGCCGCGATTTTTG 59.941 47.619 8.23 0.00 0.00 2.44
619 620 2.507484 TGGCTCCTTCACATTTCACAG 58.493 47.619 0.00 0.00 0.00 3.66
620 621 2.158623 TGGCTCCTTCACATTTCACAGT 60.159 45.455 0.00 0.00 0.00 3.55
629 630 8.912988 TCCTTCACATTTCACAGTTAGAAAAAT 58.087 29.630 0.00 0.00 38.36 1.82
630 631 8.971321 CCTTCACATTTCACAGTTAGAAAAATG 58.029 33.333 0.00 0.00 41.08 2.32
640 641 5.878669 ACAGTTAGAAAAATGGGTCGATACC 59.121 40.000 2.41 2.41 45.97 2.73
674 675 8.515695 TCTTCCTAATGTAGTGATCTAAACGA 57.484 34.615 0.00 0.00 0.00 3.85
675 676 9.132923 TCTTCCTAATGTAGTGATCTAAACGAT 57.867 33.333 0.00 0.00 34.25 3.73
726 727 8.262227 ACCGTTTTATTCTAATGTAGTGATCCA 58.738 33.333 0.00 0.00 0.00 3.41
727 728 9.104965 CCGTTTTATTCTAATGTAGTGATCCAA 57.895 33.333 0.00 0.00 0.00 3.53
731 732 9.878667 TTTATTCTAATGTAGTGATCCAAACGA 57.121 29.630 0.00 0.00 0.00 3.85
733 734 8.594881 ATTCTAATGTAGTGATCCAAACGATC 57.405 34.615 0.00 0.00 46.70 3.69
734 735 7.348080 TCTAATGTAGTGATCCAAACGATCT 57.652 36.000 0.00 0.00 46.65 2.75
735 736 7.782049 TCTAATGTAGTGATCCAAACGATCTT 58.218 34.615 0.00 0.00 46.65 2.40
758 759 9.529325 TCTTGTATTTCTTTATACAGATGGTCG 57.471 33.333 0.00 0.00 40.86 4.79
759 760 9.314321 CTTGTATTTCTTTATACAGATGGTCGT 57.686 33.333 0.00 0.00 40.86 4.34
760 761 9.661563 TTGTATTTCTTTATACAGATGGTCGTT 57.338 29.630 0.00 0.00 40.86 3.85
761 762 9.661563 TGTATTTCTTTATACAGATGGTCGTTT 57.338 29.630 0.00 0.00 36.38 3.60
767 768 9.661563 TCTTTATACAGATGGTCGTTTTATTGT 57.338 29.630 0.00 0.00 0.00 2.71
772 773 9.832445 ATACAGATGGTCGTTTTATTGTAGAAT 57.168 29.630 0.00 0.00 0.00 2.40
774 775 9.314321 ACAGATGGTCGTTTTATTGTAGAATAG 57.686 33.333 0.00 0.00 0.00 1.73
775 776 9.529325 CAGATGGTCGTTTTATTGTAGAATAGA 57.471 33.333 0.00 0.00 0.00 1.98
778 779 9.886132 ATGGTCGTTTTATTGTAGAATAGAACT 57.114 29.630 18.17 3.14 37.15 3.01
805 806 1.255342 CGATTTGTGGCGTGATACTCG 59.745 52.381 0.00 0.00 0.00 4.18
818 819 5.854338 GCGTGATACTCGAAAAATCCAAAAA 59.146 36.000 0.00 0.00 0.00 1.94
819 820 6.032460 GCGTGATACTCGAAAAATCCAAAAAG 59.968 38.462 0.00 0.00 0.00 2.27
832 833 6.665992 AATCCAAAAAGAAAGAAGGGGTAC 57.334 37.500 0.00 0.00 0.00 3.34
866 867 0.837940 ATTAAACCCTCTCCTCGGCC 59.162 55.000 0.00 0.00 0.00 6.13
874 875 4.082523 CTCCTCGGCCGCCTCAAA 62.083 66.667 23.51 0.00 0.00 2.69
875 876 3.605749 CTCCTCGGCCGCCTCAAAA 62.606 63.158 23.51 0.00 0.00 2.44
876 877 2.671619 CCTCGGCCGCCTCAAAAA 60.672 61.111 23.51 0.00 0.00 1.94
1203 1257 4.862823 CCCCCTCCTCCCCTCGAC 62.863 77.778 0.00 0.00 0.00 4.20
1254 1330 4.837896 TCCGTCTAGCTGTTCTGATATG 57.162 45.455 0.00 0.00 0.00 1.78
1279 1380 4.427577 GTTTCTAAACTAGGCCACCAGGC 61.428 52.174 5.01 0.00 46.54 4.85
1305 1406 9.658475 CGTGTCTGTTTTGAAGAACAAATTATA 57.342 29.630 0.00 0.00 45.99 0.98
1373 1475 9.750125 CAATTCCTTAGGGCTGAAATTATAAAC 57.250 33.333 0.00 0.00 0.00 2.01
1376 1478 7.114095 TCCTTAGGGCTGAAATTATAAACGTT 58.886 34.615 0.00 0.00 0.00 3.99
1470 1632 6.019108 AGAATTCTAGGGGTTGCTGAAATTT 58.981 36.000 6.06 0.00 0.00 1.82
1473 1635 4.335416 TCTAGGGGTTGCTGAAATTTGAG 58.665 43.478 0.00 0.00 0.00 3.02
1474 1636 3.243359 AGGGGTTGCTGAAATTTGAGA 57.757 42.857 9.00 0.00 0.00 3.27
1478 1640 5.185828 AGGGGTTGCTGAAATTTGAGAATAC 59.814 40.000 9.00 2.82 0.00 1.89
1525 1691 5.416639 TGCTTCATTTTACTGTGATGCTGAT 59.583 36.000 12.39 0.00 42.59 2.90
1530 1696 9.624697 TTCATTTTACTGTGATGCTGATTAAAC 57.375 29.630 0.00 0.00 0.00 2.01
1531 1697 7.962373 TCATTTTACTGTGATGCTGATTAAACG 59.038 33.333 0.00 0.00 0.00 3.60
1653 1819 7.161715 AGGGGAGATATGCAAGGTAATAAAA 57.838 36.000 0.00 0.00 0.00 1.52
1670 1836 9.668497 GGTAATAAAACTCCTAACATCTTCAGT 57.332 33.333 0.00 0.00 0.00 3.41
1705 1872 2.141517 CTGCTCTCTGTTCAACACCAG 58.858 52.381 0.00 0.00 0.00 4.00
1906 2144 6.551385 AGAATTGTACTGAAAACAGAGCAG 57.449 37.500 0.00 0.00 35.81 4.24
2101 2352 3.079578 CCATCAAGTTGCTGTCTCATGT 58.920 45.455 6.01 0.00 0.00 3.21
2149 2640 6.936968 AGTTGAACACTCCTAACCTCTTAT 57.063 37.500 0.00 0.00 0.00 1.73
2298 4048 9.685828 TGCTTATATTACAAACAGTTTTTCCAC 57.314 29.630 0.00 0.00 0.00 4.02
2443 4231 2.874086 TGCTCTCATTGTGTTGTGTCAG 59.126 45.455 0.00 0.00 0.00 3.51
2444 4232 2.874701 GCTCTCATTGTGTTGTGTCAGT 59.125 45.455 0.00 0.00 0.00 3.41
2445 4233 3.059325 GCTCTCATTGTGTTGTGTCAGTC 60.059 47.826 0.00 0.00 0.00 3.51
2475 4325 3.127533 GCCCGTTTCTGCGATGCT 61.128 61.111 0.00 0.00 0.00 3.79
2497 4348 0.404040 TGTTTCTTTCCGGCATCCCT 59.596 50.000 0.00 0.00 0.00 4.20
2518 4369 5.245531 CCTACCTGACAGCTGTTCAATTTA 58.754 41.667 22.65 7.18 0.00 1.40
2519 4370 5.122396 CCTACCTGACAGCTGTTCAATTTAC 59.878 44.000 22.65 5.86 0.00 2.01
2788 4760 1.040339 GGGCGGGGCATAACAATCAA 61.040 55.000 0.00 0.00 0.00 2.57
2792 4764 2.858260 GCGGGGCATAACAATCAATTCG 60.858 50.000 0.00 0.00 0.00 3.34
2814 4786 5.757808 TCGCAATAATGAATCAGGAATCGAA 59.242 36.000 0.00 0.00 0.00 3.71
2831 4803 2.025416 TCGAAATGGTTGGATGTCCCAT 60.025 45.455 0.00 0.00 46.10 4.00
2858 4830 3.135530 GGAGCACTCCTGAAGGTATCAAT 59.864 47.826 9.54 0.00 46.16 2.57
2951 4929 4.080015 TCCATCGGAATTCCACCTGTAATT 60.080 41.667 24.09 0.00 35.14 1.40
3011 4989 1.462670 GAAAGAAGAGTCGCTGCCAAG 59.537 52.381 0.00 0.00 0.00 3.61
3060 5038 0.736636 GGCCCTGCGTAAATACAACC 59.263 55.000 0.00 0.00 0.00 3.77
3099 5077 3.070302 GGTCTCTCTCTCTCTCTCTCTCC 59.930 56.522 0.00 0.00 0.00 3.71
3100 5078 2.959030 TCTCTCTCTCTCTCTCTCTCCG 59.041 54.545 0.00 0.00 0.00 4.63
3114 5106 0.530744 TCTCCGTGTATGTGTGAGGC 59.469 55.000 0.00 0.00 0.00 4.70
3130 5122 0.773644 AGGCTGTGACAGTTGGGATT 59.226 50.000 14.82 0.00 33.43 3.01
3137 5129 4.211125 TGTGACAGTTGGGATTGCTTTTA 58.789 39.130 0.00 0.00 0.00 1.52
3140 5132 4.280677 TGACAGTTGGGATTGCTTTTAAGG 59.719 41.667 0.00 0.00 0.00 2.69
3159 5155 7.775053 TTAAGGCTGATTGTCCATTTAAACT 57.225 32.000 0.00 0.00 0.00 2.66
3160 5156 6.670695 AAGGCTGATTGTCCATTTAAACTT 57.329 33.333 0.00 0.00 0.00 2.66
3161 5157 6.029346 AGGCTGATTGTCCATTTAAACTTG 57.971 37.500 0.00 0.00 0.00 3.16
3162 5158 5.539955 AGGCTGATTGTCCATTTAAACTTGT 59.460 36.000 0.00 0.00 0.00 3.16
3163 5159 5.863935 GGCTGATTGTCCATTTAAACTTGTC 59.136 40.000 0.00 0.00 0.00 3.18
3164 5160 6.294731 GGCTGATTGTCCATTTAAACTTGTCT 60.295 38.462 0.00 0.00 0.00 3.41
3179 5175 9.581099 TTAAACTTGTCTTGTCTTTCCATTTTC 57.419 29.630 0.00 0.00 0.00 2.29
3420 5428 5.102313 CCTTGTTGGTTTTCTTGACAGTTC 58.898 41.667 0.00 0.00 0.00 3.01
3429 5437 3.827817 TCTTGACAGTTCCTCCTCCTA 57.172 47.619 0.00 0.00 0.00 2.94
3561 5663 0.525761 TTGCTATGGCTGCGAAAACC 59.474 50.000 1.68 0.00 39.59 3.27
3562 5664 1.062525 GCTATGGCTGCGAAAACCG 59.937 57.895 0.00 0.00 37.08 4.44
3588 5690 1.008538 GTTGTTCACCCAAGCAGCG 60.009 57.895 0.00 0.00 0.00 5.18
3664 5769 3.512760 GCGACAGCGACTAGTACTC 57.487 57.895 0.00 0.00 40.82 2.59
3668 5781 2.534544 CGACAGCGACTAGTACTCGAAC 60.535 54.545 0.00 0.00 40.82 3.95
3674 5787 2.679059 CGACTAGTACTCGAACCCTGGA 60.679 54.545 0.00 0.00 32.65 3.86
3737 5885 3.635373 ACAATCATGGCATGGAGTTGATC 59.365 43.478 29.79 0.00 0.00 2.92
3791 5939 4.636249 ACCTGAGTCTCAACTGAATGTTC 58.364 43.478 3.67 0.00 36.63 3.18
3809 5959 8.511321 TGAATGTTCTTGTGTGTTACCAATATC 58.489 33.333 0.00 0.00 0.00 1.63
3853 6003 0.539438 TTTGCGTCTTGGCTTGGGAT 60.539 50.000 0.00 0.00 0.00 3.85
3856 6006 0.109132 GCGTCTTGGCTTGGGATTTG 60.109 55.000 0.00 0.00 0.00 2.32
3860 6010 3.492482 CGTCTTGGCTTGGGATTTGTTTT 60.492 43.478 0.00 0.00 0.00 2.43
3862 6012 5.606505 GTCTTGGCTTGGGATTTGTTTTAA 58.393 37.500 0.00 0.00 0.00 1.52
3863 6013 5.696270 GTCTTGGCTTGGGATTTGTTTTAAG 59.304 40.000 0.00 0.00 0.00 1.85
3864 6014 5.600484 TCTTGGCTTGGGATTTGTTTTAAGA 59.400 36.000 0.00 0.00 0.00 2.10
3865 6015 5.208463 TGGCTTGGGATTTGTTTTAAGAC 57.792 39.130 0.00 0.00 0.00 3.01
3866 6016 4.039852 TGGCTTGGGATTTGTTTTAAGACC 59.960 41.667 0.00 0.00 0.00 3.85
3877 6037 9.124807 GATTTGTTTTAAGACCGTTCCATTAAG 57.875 33.333 0.00 0.00 0.00 1.85
3885 6045 3.602390 CCGTTCCATTAAGCATAACGG 57.398 47.619 15.37 15.37 44.21 4.44
3891 6051 7.581476 CGTTCCATTAAGCATAACGGAAATAT 58.419 34.615 10.50 0.00 38.35 1.28
3900 6060 7.492352 AGCATAACGGAAATATAACAGTTCC 57.508 36.000 0.00 0.00 45.97 3.62
3929 6089 2.797177 ACAGGAGATGGGAAAGAAGC 57.203 50.000 0.00 0.00 0.00 3.86
3950 6110 0.877071 AAGCCGAGTTCAATGCACTG 59.123 50.000 0.00 0.00 0.00 3.66
3954 6114 1.150827 CGAGTTCAATGCACTGCTGA 58.849 50.000 1.98 0.00 0.00 4.26
3956 6116 2.420642 GAGTTCAATGCACTGCTGAGA 58.579 47.619 1.98 0.00 0.00 3.27
3957 6117 2.810274 GAGTTCAATGCACTGCTGAGAA 59.190 45.455 1.98 1.06 0.00 2.87
3958 6118 3.216800 AGTTCAATGCACTGCTGAGAAA 58.783 40.909 1.98 0.00 0.00 2.52
3960 6120 1.881973 TCAATGCACTGCTGAGAAACC 59.118 47.619 1.98 0.00 0.00 3.27
3962 6122 1.531423 ATGCACTGCTGAGAAACCTG 58.469 50.000 1.98 0.00 0.00 4.00
3963 6123 1.168407 TGCACTGCTGAGAAACCTGC 61.168 55.000 1.98 0.00 0.00 4.85
3964 6124 0.888285 GCACTGCTGAGAAACCTGCT 60.888 55.000 0.00 0.00 33.03 4.24
3965 6125 0.873054 CACTGCTGAGAAACCTGCTG 59.127 55.000 0.00 0.00 36.52 4.41
3966 6126 0.888285 ACTGCTGAGAAACCTGCTGC 60.888 55.000 0.00 0.00 34.82 5.25
3968 6128 0.251033 TGCTGAGAAACCTGCTGCAT 60.251 50.000 1.31 0.00 32.69 3.96
3970 6130 2.295885 GCTGAGAAACCTGCTGCATAT 58.704 47.619 1.31 0.00 0.00 1.78
3971 6131 2.033049 GCTGAGAAACCTGCTGCATATG 59.967 50.000 1.31 0.00 0.00 1.78
3973 6133 1.336125 GAGAAACCTGCTGCATATGCC 59.664 52.381 24.54 10.91 41.18 4.40
3974 6134 0.386838 GAAACCTGCTGCATATGCCC 59.613 55.000 24.54 15.64 41.18 5.36
3975 6135 1.386525 AAACCTGCTGCATATGCCCG 61.387 55.000 24.54 16.17 41.18 6.13
3976 6136 2.203252 CCTGCTGCATATGCCCGT 60.203 61.111 24.54 0.00 41.18 5.28
3977 6137 2.256591 CCTGCTGCATATGCCCGTC 61.257 63.158 24.54 11.17 41.18 4.79
3979 6139 0.887836 CTGCTGCATATGCCCGTCAT 60.888 55.000 24.54 0.00 41.18 3.06
3981 6141 0.886043 GCTGCATATGCCCGTCATCA 60.886 55.000 24.54 2.59 41.18 3.07
3982 6142 1.154197 CTGCATATGCCCGTCATCAG 58.846 55.000 24.54 8.97 41.18 2.90
3985 6145 1.800805 CATATGCCCGTCATCAGGAC 58.199 55.000 0.00 0.00 43.36 3.85
4076 6447 2.810439 TTTTGAAAACGGGCTCCATG 57.190 45.000 0.00 0.00 0.00 3.66
4111 6488 6.354130 TCTATTGGTCCTAATTACAAGCCAC 58.646 40.000 0.00 0.00 0.00 5.01
4154 6531 1.026718 CAGACTAAAGCAAGCCCCCG 61.027 60.000 0.00 0.00 0.00 5.73
4178 6555 3.068560 CGAGTCCAATAAACCAAACGGA 58.931 45.455 0.00 0.00 0.00 4.69
4179 6556 3.124636 CGAGTCCAATAAACCAAACGGAG 59.875 47.826 0.00 0.00 0.00 4.63
4180 6557 4.320870 GAGTCCAATAAACCAAACGGAGA 58.679 43.478 0.00 0.00 0.00 3.71
4181 6558 4.070009 AGTCCAATAAACCAAACGGAGAC 58.930 43.478 0.00 0.00 0.00 3.36
4182 6559 3.189910 GTCCAATAAACCAAACGGAGACC 59.810 47.826 0.00 0.00 0.00 3.85
4183 6560 2.490509 CCAATAAACCAAACGGAGACCC 59.509 50.000 0.00 0.00 0.00 4.46
4184 6561 3.418047 CAATAAACCAAACGGAGACCCT 58.582 45.455 0.00 0.00 0.00 4.34
4185 6562 3.801307 ATAAACCAAACGGAGACCCTT 57.199 42.857 0.00 0.00 0.00 3.95
4186 6563 4.914177 ATAAACCAAACGGAGACCCTTA 57.086 40.909 0.00 0.00 0.00 2.69
4187 6564 3.581265 AAACCAAACGGAGACCCTTAA 57.419 42.857 0.00 0.00 0.00 1.85
4188 6565 3.581265 AACCAAACGGAGACCCTTAAA 57.419 42.857 0.00 0.00 0.00 1.52
4189 6566 3.581265 ACCAAACGGAGACCCTTAAAA 57.419 42.857 0.00 0.00 0.00 1.52
4190 6567 3.900971 ACCAAACGGAGACCCTTAAAAA 58.099 40.909 0.00 0.00 0.00 1.94
4271 6648 4.452733 CGACCTTCGAGCCACCCC 62.453 72.222 0.00 0.00 43.74 4.95
4272 6649 4.452733 GACCTTCGAGCCACCCCG 62.453 72.222 0.00 0.00 0.00 5.73
4282 6659 4.227134 CCACCCCGCAGATCCTCG 62.227 72.222 0.00 0.00 0.00 4.63
4303 6680 2.616842 GTCAAATTCACCGTGTTGGAGT 59.383 45.455 0.00 0.00 42.00 3.85
4315 6692 2.805099 GTGTTGGAGTGAAGAAGCTCAG 59.195 50.000 0.00 0.00 33.66 3.35
4319 6696 1.405391 GGAGTGAAGAAGCTCAGCTCC 60.405 57.143 0.00 0.00 38.25 4.70
4321 6698 1.696336 AGTGAAGAAGCTCAGCTCCAA 59.304 47.619 0.00 0.00 38.25 3.53
4326 6703 3.717452 AGAAGCTCAGCTCCAATCTTT 57.283 42.857 0.00 0.00 38.25 2.52
4337 6714 3.313803 GCTCCAATCTTTAGCACCTTAGC 59.686 47.826 0.00 0.00 36.26 3.09
4343 6720 2.561419 TCTTTAGCACCTTAGCGTCACT 59.439 45.455 0.00 0.00 40.15 3.41
4346 6723 0.038159 AGCACCTTAGCGTCACTCAC 60.038 55.000 0.00 0.00 40.15 3.51
4350 6727 1.272769 ACCTTAGCGTCACTCACCTTC 59.727 52.381 0.00 0.00 0.00 3.46
4352 6729 2.416162 CCTTAGCGTCACTCACCTTCTC 60.416 54.545 0.00 0.00 0.00 2.87
4360 6737 4.675671 CGTCACTCACCTTCTCAATACCTC 60.676 50.000 0.00 0.00 0.00 3.85
4361 6738 3.444034 TCACTCACCTTCTCAATACCTCG 59.556 47.826 0.00 0.00 0.00 4.63
4368 6788 3.132289 CCTTCTCAATACCTCGCCAGTAA 59.868 47.826 0.00 0.00 0.00 2.24
4371 6791 6.462487 CCTTCTCAATACCTCGCCAGTAAATA 60.462 42.308 0.00 0.00 0.00 1.40
4376 6796 7.332557 TCAATACCTCGCCAGTAAATAAGAAA 58.667 34.615 0.00 0.00 0.00 2.52
4424 6844 5.657470 TCGATTTCGAGCATTCCAAATAG 57.343 39.130 0.00 0.00 44.22 1.73
4431 6851 1.690352 AGCATTCCAAATAGCCCATGC 59.310 47.619 0.00 0.00 37.82 4.06
4464 6884 7.759433 CGCCAGACCAACAATATAAAATCTTTT 59.241 33.333 0.00 0.00 0.00 2.27
4467 6887 9.586435 CAGACCAACAATATAAAATCTTTTCCC 57.414 33.333 0.00 0.00 0.00 3.97
4524 6944 2.221169 GCCATCGATTATCAAGGCACA 58.779 47.619 15.26 0.00 41.63 4.57
4528 6948 5.217393 CCATCGATTATCAAGGCACAAATG 58.783 41.667 0.00 0.00 0.00 2.32
4529 6949 4.898829 TCGATTATCAAGGCACAAATGG 57.101 40.909 0.00 0.00 0.00 3.16
4530 6950 4.269183 TCGATTATCAAGGCACAAATGGT 58.731 39.130 0.00 0.00 0.00 3.55
4541 6961 2.818130 ACAAATGGTGATTGTGTGCC 57.182 45.000 0.00 0.00 39.43 5.01
4542 6962 2.037901 ACAAATGGTGATTGTGTGCCA 58.962 42.857 0.00 0.00 39.43 4.92
4543 6963 2.036217 ACAAATGGTGATTGTGTGCCAG 59.964 45.455 0.00 0.00 39.43 4.85
4544 6964 1.999648 AATGGTGATTGTGTGCCAGT 58.000 45.000 0.00 0.00 34.18 4.00
4545 6965 1.538047 ATGGTGATTGTGTGCCAGTC 58.462 50.000 0.00 0.00 34.18 3.51
4546 6966 0.473755 TGGTGATTGTGTGCCAGTCT 59.526 50.000 0.00 0.00 31.41 3.24
4547 6967 0.877071 GGTGATTGTGTGCCAGTCTG 59.123 55.000 0.00 0.00 31.41 3.51
4548 6968 1.543208 GGTGATTGTGTGCCAGTCTGA 60.543 52.381 0.00 0.00 31.41 3.27
4549 6969 1.802960 GTGATTGTGTGCCAGTCTGAG 59.197 52.381 0.00 0.00 31.41 3.35
4550 6970 1.693606 TGATTGTGTGCCAGTCTGAGA 59.306 47.619 0.00 0.00 31.41 3.27
4551 6971 2.104622 TGATTGTGTGCCAGTCTGAGAA 59.895 45.455 0.00 0.00 31.41 2.87
4552 6972 2.708216 TTGTGTGCCAGTCTGAGAAA 57.292 45.000 0.00 0.00 0.00 2.52
4553 6973 2.936919 TGTGTGCCAGTCTGAGAAAT 57.063 45.000 0.00 0.00 0.00 2.17
4554 6974 3.213206 TGTGTGCCAGTCTGAGAAATT 57.787 42.857 0.00 0.00 0.00 1.82
4555 6975 3.554934 TGTGTGCCAGTCTGAGAAATTT 58.445 40.909 0.00 0.00 0.00 1.82
4556 6976 3.565482 TGTGTGCCAGTCTGAGAAATTTC 59.435 43.478 10.33 10.33 0.00 2.17
4557 6977 3.817647 GTGTGCCAGTCTGAGAAATTTCT 59.182 43.478 20.60 20.60 41.00 2.52
4558 6978 4.276926 GTGTGCCAGTCTGAGAAATTTCTT 59.723 41.667 21.33 6.05 37.73 2.52
4559 6979 4.889409 TGTGCCAGTCTGAGAAATTTCTTT 59.111 37.500 21.33 0.55 37.73 2.52
4560 6980 5.360714 TGTGCCAGTCTGAGAAATTTCTTTT 59.639 36.000 21.33 0.00 37.73 2.27
4561 6981 6.545666 TGTGCCAGTCTGAGAAATTTCTTTTA 59.454 34.615 21.33 10.52 37.73 1.52
4562 6982 7.080724 GTGCCAGTCTGAGAAATTTCTTTTAG 58.919 38.462 21.33 18.15 37.73 1.85
4563 6983 6.207417 TGCCAGTCTGAGAAATTTCTTTTAGG 59.793 38.462 21.33 17.65 37.73 2.69
4564 6984 6.616017 CCAGTCTGAGAAATTTCTTTTAGGC 58.384 40.000 21.33 19.15 37.73 3.93
4565 6985 6.207417 CCAGTCTGAGAAATTTCTTTTAGGCA 59.793 38.462 21.33 12.40 37.73 4.75
4566 6986 7.094032 CCAGTCTGAGAAATTTCTTTTAGGCAT 60.094 37.037 21.33 9.35 37.73 4.40
4567 6987 8.950210 CAGTCTGAGAAATTTCTTTTAGGCATA 58.050 33.333 21.33 4.56 37.73 3.14
4568 6988 8.951243 AGTCTGAGAAATTTCTTTTAGGCATAC 58.049 33.333 21.33 14.75 37.73 2.39
4569 6989 8.730680 GTCTGAGAAATTTCTTTTAGGCATACA 58.269 33.333 21.33 9.80 37.73 2.29
4570 6990 9.295825 TCTGAGAAATTTCTTTTAGGCATACAA 57.704 29.630 21.33 1.99 37.73 2.41
4571 6991 9.346725 CTGAGAAATTTCTTTTAGGCATACAAC 57.653 33.333 21.33 4.74 37.73 3.32
4572 6992 8.303876 TGAGAAATTTCTTTTAGGCATACAACC 58.696 33.333 21.33 4.14 37.73 3.77
4573 6993 8.422577 AGAAATTTCTTTTAGGCATACAACCT 57.577 30.769 15.11 0.00 36.27 3.50
4574 6994 9.528489 AGAAATTTCTTTTAGGCATACAACCTA 57.472 29.630 15.11 0.00 34.67 3.08
4582 7002 9.965824 CTTTTAGGCATACAACCTATATTTTGG 57.034 33.333 0.00 0.00 39.51 3.28
4583 7003 9.482175 TTTTAGGCATACAACCTATATTTTGGT 57.518 29.630 0.00 0.00 39.51 3.67
4584 7004 9.482175 TTTAGGCATACAACCTATATTTTGGTT 57.518 29.630 0.00 0.00 46.33 3.67
4585 7005 7.971368 AGGCATACAACCTATATTTTGGTTT 57.029 32.000 0.00 0.00 43.27 3.27
4586 7006 8.374184 AGGCATACAACCTATATTTTGGTTTT 57.626 30.769 0.00 0.00 43.27 2.43
4587 7007 8.474831 AGGCATACAACCTATATTTTGGTTTTC 58.525 33.333 0.00 0.00 43.27 2.29
4588 7008 8.254508 GGCATACAACCTATATTTTGGTTTTCA 58.745 33.333 0.00 0.00 43.27 2.69
4589 7009 9.816354 GCATACAACCTATATTTTGGTTTTCAT 57.184 29.630 0.00 0.00 43.27 2.57
4596 7016 8.889717 ACCTATATTTTGGTTTTCATACTGTCG 58.110 33.333 0.00 0.00 31.62 4.35
4597 7017 8.889717 CCTATATTTTGGTTTTCATACTGTCGT 58.110 33.333 0.00 0.00 0.00 4.34
4602 7022 7.556733 TTTGGTTTTCATACTGTCGTAAAGT 57.443 32.000 0.00 0.00 0.00 2.66
4603 7023 7.556733 TTGGTTTTCATACTGTCGTAAAGTT 57.443 32.000 0.00 0.00 0.00 2.66
4604 7024 6.950545 TGGTTTTCATACTGTCGTAAAGTTG 58.049 36.000 0.00 0.00 0.00 3.16
4605 7025 6.762187 TGGTTTTCATACTGTCGTAAAGTTGA 59.238 34.615 0.00 0.00 0.00 3.18
4606 7026 7.042321 TGGTTTTCATACTGTCGTAAAGTTGAG 60.042 37.037 0.00 0.00 0.00 3.02
4607 7027 7.042254 GGTTTTCATACTGTCGTAAAGTTGAGT 60.042 37.037 0.00 0.00 0.00 3.41
4608 7028 8.971321 GTTTTCATACTGTCGTAAAGTTGAGTA 58.029 33.333 0.00 0.00 0.00 2.59
4609 7029 9.531942 TTTTCATACTGTCGTAAAGTTGAGTAA 57.468 29.630 0.00 0.00 0.00 2.24
4610 7030 8.738199 TTCATACTGTCGTAAAGTTGAGTAAG 57.262 34.615 0.00 0.00 0.00 2.34
4611 7031 7.310664 TCATACTGTCGTAAAGTTGAGTAAGG 58.689 38.462 0.00 0.00 0.00 2.69
4612 7032 4.304939 ACTGTCGTAAAGTTGAGTAAGGC 58.695 43.478 0.00 0.00 0.00 4.35
4613 7033 4.202182 ACTGTCGTAAAGTTGAGTAAGGCA 60.202 41.667 0.00 0.00 0.00 4.75
4614 7034 4.695396 TGTCGTAAAGTTGAGTAAGGCAA 58.305 39.130 0.00 0.00 0.00 4.52
4615 7035 5.117584 TGTCGTAAAGTTGAGTAAGGCAAA 58.882 37.500 0.00 0.00 0.00 3.68
4616 7036 5.585445 TGTCGTAAAGTTGAGTAAGGCAAAA 59.415 36.000 0.00 0.00 0.00 2.44
4617 7037 6.261381 TGTCGTAAAGTTGAGTAAGGCAAAAT 59.739 34.615 0.00 0.00 0.00 1.82
4618 7038 6.795593 GTCGTAAAGTTGAGTAAGGCAAAATC 59.204 38.462 0.00 0.00 0.00 2.17
4619 7039 6.483974 TCGTAAAGTTGAGTAAGGCAAAATCA 59.516 34.615 0.00 0.00 0.00 2.57
4620 7040 7.012515 TCGTAAAGTTGAGTAAGGCAAAATCAA 59.987 33.333 0.00 0.00 0.00 2.57
4621 7041 7.323656 CGTAAAGTTGAGTAAGGCAAAATCAAG 59.676 37.037 2.80 0.00 30.99 3.02
4622 7042 6.959639 AAGTTGAGTAAGGCAAAATCAAGA 57.040 33.333 2.80 0.00 30.99 3.02
4623 7043 7.530426 AAGTTGAGTAAGGCAAAATCAAGAT 57.470 32.000 2.80 0.00 30.99 2.40
4624 7044 8.635765 AAGTTGAGTAAGGCAAAATCAAGATA 57.364 30.769 2.80 0.00 30.99 1.98
4625 7045 8.814038 AGTTGAGTAAGGCAAAATCAAGATAT 57.186 30.769 2.80 0.00 30.99 1.63
4626 7046 9.247861 AGTTGAGTAAGGCAAAATCAAGATATT 57.752 29.630 2.80 0.00 30.99 1.28
4632 7052 9.736023 GTAAGGCAAAATCAAGATATTAAGTGG 57.264 33.333 0.00 0.00 0.00 4.00
4633 7053 8.593945 AAGGCAAAATCAAGATATTAAGTGGA 57.406 30.769 0.00 0.00 0.00 4.02
4634 7054 8.593945 AGGCAAAATCAAGATATTAAGTGGAA 57.406 30.769 0.00 0.00 0.00 3.53
4635 7055 8.689972 AGGCAAAATCAAGATATTAAGTGGAAG 58.310 33.333 0.00 0.00 0.00 3.46
4636 7056 8.470002 GGCAAAATCAAGATATTAAGTGGAAGT 58.530 33.333 0.00 0.00 0.00 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 5.773680 TGGGACGGAAGAAGTATCTTATAGG 59.226 44.000 0.00 0.00 45.91 2.57
26 27 6.896021 TGGGACGGAAGAAGTATCTTATAG 57.104 41.667 0.00 0.00 45.91 1.31
58 59 3.211045 ACATGGTGGATGTAATAACGCC 58.789 45.455 0.00 0.00 43.96 5.68
93 94 6.055588 CCTTCATCCCACAATATAAGACGTT 58.944 40.000 0.00 0.00 0.00 3.99
103 104 7.177878 GTCCAATATATCCTTCATCCCACAAT 58.822 38.462 0.00 0.00 0.00 2.71
128 129 3.499918 GCCAGAAGAAATATGATCGGTGG 59.500 47.826 0.00 0.00 0.00 4.61
144 145 7.171337 GCAGTGATTCAAATTTAAAAGCCAGAA 59.829 33.333 0.00 0.00 0.00 3.02
145 146 6.646240 GCAGTGATTCAAATTTAAAAGCCAGA 59.354 34.615 0.00 0.00 0.00 3.86
146 147 6.400303 CGCAGTGATTCAAATTTAAAAGCCAG 60.400 38.462 0.00 0.00 0.00 4.85
192 193 5.138758 TCTATAGGTGTGGGAGCTTCTAA 57.861 43.478 0.00 0.00 33.31 2.10
223 224 4.211584 GTGATCTCTCTGCATTGCACTATG 59.788 45.833 7.38 0.00 33.79 2.23
240 241 2.227194 GTTTGGGGTTCAACGTGATCT 58.773 47.619 0.00 0.00 34.67 2.75
256 257 7.925993 TGTAATCACTTGTGTTAAGAGGTTTG 58.074 34.615 0.46 0.00 0.00 2.93
320 321 5.337009 CCCCCATACATACGGTTATGAGTAC 60.337 48.000 0.43 0.00 37.86 2.73
354 355 1.230212 CTGCATCCCCTTTACCCCC 59.770 63.158 0.00 0.00 0.00 5.40
355 356 0.183731 CTCTGCATCCCCTTTACCCC 59.816 60.000 0.00 0.00 0.00 4.95
356 357 0.183731 CCTCTGCATCCCCTTTACCC 59.816 60.000 0.00 0.00 0.00 3.69
357 358 1.141858 CTCCTCTGCATCCCCTTTACC 59.858 57.143 0.00 0.00 0.00 2.85
358 359 1.141858 CCTCCTCTGCATCCCCTTTAC 59.858 57.143 0.00 0.00 0.00 2.01
371 372 8.862091 TTATCTAATCTTCCTTTTCCTCCTCT 57.138 34.615 0.00 0.00 0.00 3.69
417 418 3.077359 CACAAAGGAGAAGACATGGGAC 58.923 50.000 0.00 0.00 0.00 4.46
418 419 2.978978 TCACAAAGGAGAAGACATGGGA 59.021 45.455 0.00 0.00 0.00 4.37
419 420 3.423539 TCACAAAGGAGAAGACATGGG 57.576 47.619 0.00 0.00 0.00 4.00
420 421 6.039047 CCATTATCACAAAGGAGAAGACATGG 59.961 42.308 0.00 0.00 0.00 3.66
421 422 6.459298 GCCATTATCACAAAGGAGAAGACATG 60.459 42.308 0.00 0.00 0.00 3.21
422 423 5.591877 GCCATTATCACAAAGGAGAAGACAT 59.408 40.000 0.00 0.00 0.00 3.06
423 424 4.943705 GCCATTATCACAAAGGAGAAGACA 59.056 41.667 0.00 0.00 0.00 3.41
424 425 4.034510 CGCCATTATCACAAAGGAGAAGAC 59.965 45.833 0.00 0.00 0.00 3.01
425 426 4.191544 CGCCATTATCACAAAGGAGAAGA 58.808 43.478 0.00 0.00 0.00 2.87
426 427 3.242870 GCGCCATTATCACAAAGGAGAAG 60.243 47.826 0.00 0.00 0.00 2.85
427 428 2.682856 GCGCCATTATCACAAAGGAGAA 59.317 45.455 0.00 0.00 0.00 2.87
428 429 2.288666 GCGCCATTATCACAAAGGAGA 58.711 47.619 0.00 0.00 0.00 3.71
452 453 5.945784 AGAGGAACATAGCTAAAAATGTGCA 59.054 36.000 7.48 0.00 36.47 4.57
458 459 9.019656 TGCAATAAAGAGGAACATAGCTAAAAA 57.980 29.630 0.00 0.00 0.00 1.94
459 460 8.458843 GTGCAATAAAGAGGAACATAGCTAAAA 58.541 33.333 0.00 0.00 0.00 1.52
471 472 3.369892 GCTGAGGAGTGCAATAAAGAGGA 60.370 47.826 0.00 0.00 0.00 3.71
472 473 2.941720 GCTGAGGAGTGCAATAAAGAGG 59.058 50.000 0.00 0.00 0.00 3.69
475 476 5.181748 AGTTAGCTGAGGAGTGCAATAAAG 58.818 41.667 0.00 0.00 0.00 1.85
491 492 5.480073 GGATAGATGGAGTGATGAGTTAGCT 59.520 44.000 0.00 0.00 0.00 3.32
526 527 1.002087 CGGAGCAAAACTAGGGTCAGT 59.998 52.381 0.00 0.00 33.35 3.41
527 528 1.275291 TCGGAGCAAAACTAGGGTCAG 59.725 52.381 0.00 0.00 33.35 3.51
533 534 3.501950 GGCAAAATCGGAGCAAAACTAG 58.498 45.455 0.00 0.00 0.00 2.57
544 545 1.058979 CAAAAATCGCGGCAAAATCGG 59.941 47.619 6.13 0.00 0.00 4.18
545 546 1.524788 GCAAAAATCGCGGCAAAATCG 60.525 47.619 6.13 0.00 0.00 3.34
554 555 1.133363 CGTGATGGGCAAAAATCGCG 61.133 55.000 0.00 0.00 46.45 5.87
564 565 2.045926 AGAAGTGGCGTGATGGGC 60.046 61.111 0.00 0.00 0.00 5.36
732 733 9.529325 CGACCATCTGTATAAAGAAATACAAGA 57.471 33.333 0.00 0.00 40.79 3.02
733 734 9.314321 ACGACCATCTGTATAAAGAAATACAAG 57.686 33.333 0.00 0.00 40.79 3.16
734 735 9.661563 AACGACCATCTGTATAAAGAAATACAA 57.338 29.630 0.00 0.00 40.79 2.41
735 736 9.661563 AAACGACCATCTGTATAAAGAAATACA 57.338 29.630 0.00 0.00 39.45 2.29
749 750 9.529325 TCTATTCTACAATAAAACGACCATCTG 57.471 33.333 0.00 0.00 0.00 2.90
752 753 9.886132 AGTTCTATTCTACAATAAAACGACCAT 57.114 29.630 0.00 0.00 32.62 3.55
769 770 9.813080 GCCACAAATCGATTTATAGTTCTATTC 57.187 33.333 22.33 0.57 0.00 1.75
770 771 8.495949 CGCCACAAATCGATTTATAGTTCTATT 58.504 33.333 22.33 0.00 0.00 1.73
771 772 7.656137 ACGCCACAAATCGATTTATAGTTCTAT 59.344 33.333 22.33 1.69 0.00 1.98
772 773 6.982141 ACGCCACAAATCGATTTATAGTTCTA 59.018 34.615 22.33 0.00 0.00 2.10
773 774 5.815740 ACGCCACAAATCGATTTATAGTTCT 59.184 36.000 22.33 0.00 0.00 3.01
774 775 5.901884 CACGCCACAAATCGATTTATAGTTC 59.098 40.000 22.33 9.86 0.00 3.01
775 776 5.583061 TCACGCCACAAATCGATTTATAGTT 59.417 36.000 22.33 4.00 0.00 2.24
776 777 5.113383 TCACGCCACAAATCGATTTATAGT 58.887 37.500 22.33 13.82 0.00 2.12
777 778 5.651172 TCACGCCACAAATCGATTTATAG 57.349 39.130 22.33 13.19 0.00 1.31
778 779 6.926826 AGTATCACGCCACAAATCGATTTATA 59.073 34.615 22.33 11.39 0.00 0.98
779 780 5.758296 AGTATCACGCCACAAATCGATTTAT 59.242 36.000 22.33 9.67 0.00 1.40
780 781 5.113383 AGTATCACGCCACAAATCGATTTA 58.887 37.500 22.33 5.67 0.00 1.40
787 788 2.665649 TCGAGTATCACGCCACAAAT 57.334 45.000 0.00 0.00 33.17 2.32
805 806 7.054124 ACCCCTTCTTTCTTTTTGGATTTTTC 58.946 34.615 0.00 0.00 0.00 2.29
818 819 4.903045 TCGATTTGTACCCCTTCTTTCT 57.097 40.909 0.00 0.00 0.00 2.52
819 820 5.066117 GGAATCGATTTGTACCCCTTCTTTC 59.934 44.000 12.81 0.00 0.00 2.62
832 833 6.639563 AGGGTTTAATTTGGGAATCGATTTG 58.360 36.000 12.81 0.00 0.00 2.32
887 888 1.446272 GTCCGTGCACTACTGCTCC 60.446 63.158 16.19 0.00 44.57 4.70
922 927 5.800296 CGAGGGTTTAATTTGGGGAATTTT 58.200 37.500 0.00 0.00 38.80 1.82
1203 1257 1.226888 GACGTACTTAGGCAGCGGG 60.227 63.158 0.00 0.00 0.00 6.13
1254 1330 2.998670 GGTGGCCTAGTTTAGAAACGAC 59.001 50.000 3.32 0.00 43.51 4.34
1279 1380 6.869421 AATTTGTTCTTCAAAACAGACACG 57.131 33.333 0.00 0.00 46.97 4.49
1305 1406 7.325694 CAATTTCAGCACATTTTAGAAGGGAT 58.674 34.615 0.00 0.00 0.00 3.85
1313 1414 8.899427 TTCATTTCCAATTTCAGCACATTTTA 57.101 26.923 0.00 0.00 0.00 1.52
1373 1475 4.039032 ACAAGAATTTGTTGCCGTAAACG 58.961 39.130 6.21 0.00 45.01 3.60
1376 1478 3.381908 ACCACAAGAATTTGTTGCCGTAA 59.618 39.130 6.21 0.00 45.01 3.18
1408 1510 4.873817 TCAGACACATTTGCAATTTCAGG 58.126 39.130 0.00 0.00 0.00 3.86
1470 1632 8.182227 CGTCAACACAGTCTATTAGTATTCTCA 58.818 37.037 0.00 0.00 0.00 3.27
1473 1635 8.182881 AGTCGTCAACACAGTCTATTAGTATTC 58.817 37.037 0.00 0.00 0.00 1.75
1474 1636 8.053026 AGTCGTCAACACAGTCTATTAGTATT 57.947 34.615 0.00 0.00 0.00 1.89
1478 1640 6.024664 CAGAGTCGTCAACACAGTCTATTAG 58.975 44.000 0.00 0.00 0.00 1.73
1525 1691 8.795842 ACCTTGAACCATAACATATCGTTTAA 57.204 30.769 0.00 0.00 39.14 1.52
1530 1696 7.042051 CCTTGTACCTTGAACCATAACATATCG 60.042 40.741 0.00 0.00 0.00 2.92
1531 1697 7.228706 CCCTTGTACCTTGAACCATAACATATC 59.771 40.741 0.00 0.00 0.00 1.63
1685 1851 2.141517 CTGGTGTTGAACAGAGAGCAG 58.858 52.381 0.00 0.00 36.86 4.24
1705 1872 2.151881 TGCAAAATGACCATGCACAC 57.848 45.000 0.00 0.00 44.52 3.82
1845 2067 4.917887 CACTCTGCAGTGTAGAATGTTC 57.082 45.455 20.25 0.00 44.63 3.18
1906 2144 3.907894 TGTTTTTGGAACGGATAGCAC 57.092 42.857 0.00 0.00 0.00 4.40
2101 2352 1.603455 CCTCCCTTTTGAAGCGGCA 60.603 57.895 1.45 0.00 0.00 5.69
2288 4038 6.532302 GTGTTAACCAATTTCGTGGAAAAACT 59.468 34.615 2.48 0.00 41.65 2.66
2298 4048 3.319689 AGGGGTTGTGTTAACCAATTTCG 59.680 43.478 10.63 0.00 42.03 3.46
2443 4231 1.338769 ACGGGCCAAGAACTACATGAC 60.339 52.381 4.39 0.00 0.00 3.06
2444 4232 0.981183 ACGGGCCAAGAACTACATGA 59.019 50.000 4.39 0.00 0.00 3.07
2445 4233 1.821216 AACGGGCCAAGAACTACATG 58.179 50.000 4.39 0.00 0.00 3.21
2475 4325 0.881118 GATGCCGGAAAGAAACAGCA 59.119 50.000 5.05 0.00 34.28 4.41
2497 4348 5.001232 GGTAAATTGAACAGCTGTCAGGTA 58.999 41.667 21.95 5.39 0.00 3.08
2573 4426 1.241165 TGAAGGTGCATGCAGAGTTG 58.759 50.000 23.41 0.00 0.00 3.16
2646 4607 8.226543 TCAAAACATGATTAAAAACTCATCGC 57.773 30.769 0.00 0.00 31.50 4.58
2769 4738 1.040339 TTGATTGTTATGCCCCGCCC 61.040 55.000 0.00 0.00 0.00 6.13
2771 4740 2.742774 GAATTGATTGTTATGCCCCGC 58.257 47.619 0.00 0.00 0.00 6.13
2772 4741 2.858260 GCGAATTGATTGTTATGCCCCG 60.858 50.000 0.00 0.00 0.00 5.73
2788 4760 6.427853 TCGATTCCTGATTCATTATTGCGAAT 59.572 34.615 0.00 0.00 34.58 3.34
2792 4764 7.327761 CCATTTCGATTCCTGATTCATTATTGC 59.672 37.037 0.00 0.00 0.00 3.56
2858 4830 3.266772 ACCTCAAAGCATGTTCCTCCATA 59.733 43.478 0.00 0.00 0.00 2.74
2899 4871 0.324943 AAAGTCACCCGTCCATCTGG 59.675 55.000 0.00 0.00 0.00 3.86
2900 4872 1.001974 TCAAAGTCACCCGTCCATCTG 59.998 52.381 0.00 0.00 0.00 2.90
2901 4873 1.002087 GTCAAAGTCACCCGTCCATCT 59.998 52.381 0.00 0.00 0.00 2.90
2902 4874 1.439679 GTCAAAGTCACCCGTCCATC 58.560 55.000 0.00 0.00 0.00 3.51
3005 4983 1.289694 CGCATCCTTTTGCTTGGCA 59.710 52.632 0.00 0.00 40.54 4.92
3011 4989 1.583709 GTAGCGCGCATCCTTTTGC 60.584 57.895 35.10 10.49 39.29 3.68
3035 5013 1.562672 ATTTACGCAGGGCCACCTCT 61.563 55.000 6.18 0.00 46.95 3.69
3060 5038 1.157870 ACCTTGGTGTTGTTCGCTCG 61.158 55.000 0.00 0.00 0.00 5.03
3099 5077 1.070821 CACAGCCTCACACATACACG 58.929 55.000 0.00 0.00 0.00 4.49
3100 5078 2.069273 GTCACAGCCTCACACATACAC 58.931 52.381 0.00 0.00 0.00 2.90
3114 5106 1.901591 AGCAATCCCAACTGTCACAG 58.098 50.000 2.22 2.22 37.52 3.66
3130 5122 3.495331 TGGACAATCAGCCTTAAAAGCA 58.505 40.909 0.45 0.00 0.00 3.91
3137 5129 6.041979 ACAAGTTTAAATGGACAATCAGCCTT 59.958 34.615 0.00 0.00 0.00 4.35
3140 5132 6.681777 AGACAAGTTTAAATGGACAATCAGC 58.318 36.000 0.00 0.00 0.00 4.26
3159 5155 9.447157 AAAAATGAAAATGGAAAGACAAGACAA 57.553 25.926 0.00 0.00 0.00 3.18
3160 5156 9.097257 GAAAAATGAAAATGGAAAGACAAGACA 57.903 29.630 0.00 0.00 0.00 3.41
3161 5157 9.097257 TGAAAAATGAAAATGGAAAGACAAGAC 57.903 29.630 0.00 0.00 0.00 3.01
3162 5158 9.316730 CTGAAAAATGAAAATGGAAAGACAAGA 57.683 29.630 0.00 0.00 0.00 3.02
3163 5159 9.101655 ACTGAAAAATGAAAATGGAAAGACAAG 57.898 29.630 0.00 0.00 0.00 3.16
3164 5160 9.447157 AACTGAAAAATGAAAATGGAAAGACAA 57.553 25.926 0.00 0.00 0.00 3.18
3179 5175 4.053295 CCACCAGCTCAAACTGAAAAATG 58.947 43.478 0.00 0.00 40.25 2.32
3368 5376 7.067372 CCTGCATCATTTTCTCCAACTATACAA 59.933 37.037 0.00 0.00 0.00 2.41
3420 5428 2.131023 AGGCCAAGAATTAGGAGGAGG 58.869 52.381 5.01 0.00 0.00 4.30
3429 5437 5.357742 AACAAGAAAACAGGCCAAGAATT 57.642 34.783 5.01 0.00 0.00 2.17
3561 5663 2.639286 GTGAACAACAGGCTGGCG 59.361 61.111 20.34 11.60 0.00 5.69
3562 5664 2.564721 GGGTGAACAACAGGCTGGC 61.565 63.158 20.34 3.21 0.00 4.85
3588 5690 1.202651 ACTACCACCGCCATATGCTTC 60.203 52.381 0.00 0.00 38.05 3.86
3614 5716 4.341235 TCCGAACCAGGATAGTCAATACAG 59.659 45.833 0.00 0.00 34.92 2.74
3662 5767 0.684805 ACTAGCCTCCAGGGTTCGAG 60.685 60.000 1.88 0.00 44.81 4.04
3664 5769 1.517832 CACTAGCCTCCAGGGTTCG 59.482 63.158 1.88 0.00 44.81 3.95
3668 5781 2.739996 CCAGCACTAGCCTCCAGGG 61.740 68.421 0.00 0.00 43.56 4.45
3674 5787 1.002868 CACAAGCCAGCACTAGCCT 60.003 57.895 0.00 0.00 43.56 4.58
3716 5859 3.634910 TGATCAACTCCATGCCATGATTG 59.365 43.478 6.18 7.94 31.24 2.67
3718 5862 3.588210 TGATCAACTCCATGCCATGAT 57.412 42.857 6.18 0.00 33.64 2.45
3719 5863 3.018856 GTTGATCAACTCCATGCCATGA 58.981 45.455 27.66 0.00 38.25 3.07
3737 5885 5.217393 CCACATGACACATTTCTCAAGTTG 58.783 41.667 0.00 0.00 0.00 3.16
3809 5959 6.144854 CCACAATAGCAAATGTCATTATCGG 58.855 40.000 0.00 0.00 0.00 4.18
3853 6003 6.919115 GCTTAATGGAACGGTCTTAAAACAAA 59.081 34.615 0.00 0.00 0.00 2.83
3856 6006 6.004408 TGCTTAATGGAACGGTCTTAAAAC 57.996 37.500 0.00 0.00 0.00 2.43
3860 6010 5.521010 CGTTATGCTTAATGGAACGGTCTTA 59.479 40.000 0.00 0.00 39.27 2.10
3862 6012 3.869246 CGTTATGCTTAATGGAACGGTCT 59.131 43.478 0.00 0.00 39.27 3.85
3863 6013 4.191662 CGTTATGCTTAATGGAACGGTC 57.808 45.455 0.00 0.00 39.27 4.79
3877 6037 7.254227 TGGAACTGTTATATTTCCGTTATGC 57.746 36.000 0.00 0.00 40.13 3.14
3904 6064 6.153510 GCTTCTTTCCCATCTCCTGTTATTTT 59.846 38.462 0.00 0.00 0.00 1.82
3929 6089 0.179215 GTGCATTGAACTCGGCTTCG 60.179 55.000 0.00 0.00 0.00 3.79
3950 6110 1.742761 TATGCAGCAGGTTTCTCAGC 58.257 50.000 0.00 0.00 0.00 4.26
3954 6114 1.396653 GGCATATGCAGCAGGTTTCT 58.603 50.000 28.07 0.00 44.36 2.52
3956 6116 1.386525 CGGGCATATGCAGCAGGTTT 61.387 55.000 28.07 0.00 44.36 3.27
3957 6117 1.825191 CGGGCATATGCAGCAGGTT 60.825 57.895 28.07 0.00 44.36 3.50
3958 6118 2.203252 CGGGCATATGCAGCAGGT 60.203 61.111 28.07 0.00 44.36 4.00
3960 6120 0.887836 ATGACGGGCATATGCAGCAG 60.888 55.000 28.07 17.30 44.36 4.24
3962 6122 0.886043 TGATGACGGGCATATGCAGC 60.886 55.000 28.07 12.35 44.36 5.25
3963 6123 1.154197 CTGATGACGGGCATATGCAG 58.846 55.000 28.07 22.25 44.36 4.41
3964 6124 0.250424 CCTGATGACGGGCATATGCA 60.250 55.000 28.07 8.59 44.36 3.96
3965 6125 0.035317 TCCTGATGACGGGCATATGC 59.965 55.000 19.79 19.79 42.00 3.14
3966 6126 1.800805 GTCCTGATGACGGGCATATG 58.199 55.000 0.00 0.00 42.00 1.78
4042 6389 9.352784 CCGTTTTCAAAATATCATACAACATGT 57.647 29.630 0.00 0.00 0.00 3.21
4044 6391 7.491048 GCCCGTTTTCAAAATATCATACAACAT 59.509 33.333 0.00 0.00 0.00 2.71
4076 6447 1.340568 GACCAATAGAGTACGGGCTCC 59.659 57.143 5.11 0.00 36.20 4.70
4080 6451 5.803237 AATTAGGACCAATAGAGTACGGG 57.197 43.478 0.00 0.00 0.00 5.28
4082 6453 7.381678 GCTTGTAATTAGGACCAATAGAGTACG 59.618 40.741 0.00 0.00 0.00 3.67
4111 6488 8.260270 TGAGAACATTGTTGAGAACTATCATG 57.740 34.615 6.80 0.00 0.00 3.07
4154 6531 3.424433 CGTTTGGTTTATTGGACTCGCTC 60.424 47.826 0.00 0.00 0.00 5.03
4187 6564 6.773976 TGTCTGTTTTGTCCTCTGATTTTT 57.226 33.333 0.00 0.00 0.00 1.94
4188 6565 6.773976 TTGTCTGTTTTGTCCTCTGATTTT 57.226 33.333 0.00 0.00 0.00 1.82
4189 6566 6.966534 ATTGTCTGTTTTGTCCTCTGATTT 57.033 33.333 0.00 0.00 0.00 2.17
4190 6567 7.453393 TCTATTGTCTGTTTTGTCCTCTGATT 58.547 34.615 0.00 0.00 0.00 2.57
4191 6568 7.009179 TCTATTGTCTGTTTTGTCCTCTGAT 57.991 36.000 0.00 0.00 0.00 2.90
4192 6569 6.419484 TCTATTGTCTGTTTTGTCCTCTGA 57.581 37.500 0.00 0.00 0.00 3.27
4193 6570 7.064371 CAGATCTATTGTCTGTTTTGTCCTCTG 59.936 40.741 0.00 0.00 38.58 3.35
4194 6571 7.102346 CAGATCTATTGTCTGTTTTGTCCTCT 58.898 38.462 0.00 0.00 38.58 3.69
4195 6572 6.183360 GCAGATCTATTGTCTGTTTTGTCCTC 60.183 42.308 0.00 0.00 43.86 3.71
4261 6638 4.899239 GATCTGCGGGGTGGCTCG 62.899 72.222 0.00 0.00 0.00 5.03
4267 6644 3.148279 GACGAGGATCTGCGGGGT 61.148 66.667 11.33 0.00 0.00 4.95
4268 6645 2.238847 TTTGACGAGGATCTGCGGGG 62.239 60.000 11.33 0.00 0.00 5.73
4269 6646 0.179073 ATTTGACGAGGATCTGCGGG 60.179 55.000 11.33 0.00 0.00 6.13
4270 6647 1.594862 GAATTTGACGAGGATCTGCGG 59.405 52.381 11.33 0.00 0.00 5.69
4271 6648 2.029728 GTGAATTTGACGAGGATCTGCG 59.970 50.000 6.28 6.28 0.00 5.18
4272 6649 2.352960 GGTGAATTTGACGAGGATCTGC 59.647 50.000 0.00 0.00 0.00 4.26
4273 6650 2.604914 CGGTGAATTTGACGAGGATCTG 59.395 50.000 0.00 0.00 0.00 2.90
4274 6651 2.233922 ACGGTGAATTTGACGAGGATCT 59.766 45.455 0.00 0.00 0.00 2.75
4282 6659 2.616842 ACTCCAACACGGTGAATTTGAC 59.383 45.455 16.29 0.00 35.57 3.18
4303 6680 2.570752 AGATTGGAGCTGAGCTTCTTCA 59.429 45.455 14.82 5.55 39.88 3.02
4315 6692 3.313803 GCTAAGGTGCTAAAGATTGGAGC 59.686 47.826 0.00 0.00 36.72 4.70
4319 6696 3.932710 TGACGCTAAGGTGCTAAAGATTG 59.067 43.478 0.00 0.00 0.00 2.67
4321 6698 3.195825 AGTGACGCTAAGGTGCTAAAGAT 59.804 43.478 0.00 0.00 0.00 2.40
4326 6703 1.201647 GTGAGTGACGCTAAGGTGCTA 59.798 52.381 0.00 0.00 0.00 3.49
4337 6714 3.193691 AGGTATTGAGAAGGTGAGTGACG 59.806 47.826 0.00 0.00 0.00 4.35
4343 6720 1.480954 GGCGAGGTATTGAGAAGGTGA 59.519 52.381 0.00 0.00 0.00 4.02
4346 6723 1.482593 ACTGGCGAGGTATTGAGAAGG 59.517 52.381 0.00 0.00 0.00 3.46
4350 6727 6.513180 TCTTATTTACTGGCGAGGTATTGAG 58.487 40.000 0.00 0.00 0.00 3.02
4352 6729 7.548196 TTTCTTATTTACTGGCGAGGTATTG 57.452 36.000 0.00 0.00 0.00 1.90
4360 6737 8.742554 AATTGTTCTTTTCTTATTTACTGGCG 57.257 30.769 0.00 0.00 0.00 5.69
4412 6832 1.603678 CGCATGGGCTATTTGGAATGC 60.604 52.381 0.00 0.00 38.10 3.56
4431 6851 4.776322 TTGGTCTGGCGGCCATCG 62.776 66.667 24.10 12.33 42.76 3.84
4464 6884 5.163034 TGTTAATCTTTTCTTCCTGGTGGGA 60.163 40.000 0.00 0.00 43.41 4.37
4467 6887 5.534654 TGGTGTTAATCTTTTCTTCCTGGTG 59.465 40.000 0.00 0.00 0.00 4.17
4524 6944 2.297033 GACTGGCACACAATCACCATTT 59.703 45.455 0.00 0.00 0.00 2.32
4528 6948 0.877071 CAGACTGGCACACAATCACC 59.123 55.000 0.00 0.00 0.00 4.02
4529 6949 1.802960 CTCAGACTGGCACACAATCAC 59.197 52.381 1.81 0.00 0.00 3.06
4530 6950 1.693606 TCTCAGACTGGCACACAATCA 59.306 47.619 1.81 0.00 0.00 2.57
4531 6951 2.462456 TCTCAGACTGGCACACAATC 57.538 50.000 1.81 0.00 0.00 2.67
4532 6952 2.936919 TTCTCAGACTGGCACACAAT 57.063 45.000 1.81 0.00 0.00 2.71
4533 6953 2.708216 TTTCTCAGACTGGCACACAA 57.292 45.000 1.81 0.00 0.00 3.33
4534 6954 2.936919 ATTTCTCAGACTGGCACACA 57.063 45.000 1.81 0.00 0.00 3.72
4535 6955 3.817647 AGAAATTTCTCAGACTGGCACAC 59.182 43.478 15.11 0.00 29.94 3.82
4536 6956 4.090761 AGAAATTTCTCAGACTGGCACA 57.909 40.909 15.11 0.00 29.94 4.57
4537 6957 5.444663 AAAGAAATTTCTCAGACTGGCAC 57.555 39.130 20.71 0.00 36.28 5.01
4538 6958 6.207417 CCTAAAAGAAATTTCTCAGACTGGCA 59.793 38.462 20.71 0.00 36.28 4.92
4539 6959 6.616017 CCTAAAAGAAATTTCTCAGACTGGC 58.384 40.000 20.71 0.00 36.28 4.85
4540 6960 6.207417 TGCCTAAAAGAAATTTCTCAGACTGG 59.793 38.462 20.71 17.10 36.28 4.00
4541 6961 7.206981 TGCCTAAAAGAAATTTCTCAGACTG 57.793 36.000 20.71 9.52 36.28 3.51
4542 6962 8.951243 GTATGCCTAAAAGAAATTTCTCAGACT 58.049 33.333 20.71 2.30 36.28 3.24
4543 6963 8.730680 TGTATGCCTAAAAGAAATTTCTCAGAC 58.269 33.333 20.71 18.40 36.28 3.51
4544 6964 8.862325 TGTATGCCTAAAAGAAATTTCTCAGA 57.138 30.769 20.71 8.15 36.28 3.27
4545 6965 9.346725 GTTGTATGCCTAAAAGAAATTTCTCAG 57.653 33.333 20.71 16.44 36.28 3.35
4546 6966 8.303876 GGTTGTATGCCTAAAAGAAATTTCTCA 58.696 33.333 20.71 13.28 36.28 3.27
4547 6967 8.523658 AGGTTGTATGCCTAAAAGAAATTTCTC 58.476 33.333 20.71 8.10 33.45 2.87
4548 6968 8.422577 AGGTTGTATGCCTAAAAGAAATTTCT 57.577 30.769 15.11 15.11 35.07 2.52
4556 6976 9.965824 CCAAAATATAGGTTGTATGCCTAAAAG 57.034 33.333 0.00 0.00 41.41 2.27
4557 6977 9.482175 ACCAAAATATAGGTTGTATGCCTAAAA 57.518 29.630 0.00 0.00 41.41 1.52
4558 6978 9.482175 AACCAAAATATAGGTTGTATGCCTAAA 57.518 29.630 6.41 0.00 45.91 1.85
4559 6979 9.482175 AAACCAAAATATAGGTTGTATGCCTAA 57.518 29.630 7.64 0.00 46.92 2.69
4560 6980 9.482175 AAAACCAAAATATAGGTTGTATGCCTA 57.518 29.630 7.64 0.00 46.92 3.93
4561 6981 7.971368 AAACCAAAATATAGGTTGTATGCCT 57.029 32.000 7.64 0.00 46.92 4.75
4562 6982 8.254508 TGAAAACCAAAATATAGGTTGTATGCC 58.745 33.333 7.64 0.00 46.92 4.40
4563 6983 9.816354 ATGAAAACCAAAATATAGGTTGTATGC 57.184 29.630 7.64 0.00 46.92 3.14
4570 6990 8.889717 CGACAGTATGAAAACCAAAATATAGGT 58.110 33.333 0.00 0.00 39.69 3.08
4571 6991 8.889717 ACGACAGTATGAAAACCAAAATATAGG 58.110 33.333 0.00 0.00 39.69 2.57
4576 6996 8.626526 ACTTTACGACAGTATGAAAACCAAAAT 58.373 29.630 0.00 0.00 39.69 1.82
4577 6997 7.987649 ACTTTACGACAGTATGAAAACCAAAA 58.012 30.769 0.00 0.00 39.69 2.44
4578 6998 7.556733 ACTTTACGACAGTATGAAAACCAAA 57.443 32.000 0.00 0.00 39.69 3.28
4579 6999 7.280428 TCAACTTTACGACAGTATGAAAACCAA 59.720 33.333 0.00 0.00 39.69 3.67
4580 7000 6.762187 TCAACTTTACGACAGTATGAAAACCA 59.238 34.615 0.00 0.00 39.69 3.67
4581 7001 7.042254 ACTCAACTTTACGACAGTATGAAAACC 60.042 37.037 0.00 0.00 39.69 3.27
4582 7002 7.848491 ACTCAACTTTACGACAGTATGAAAAC 58.152 34.615 0.00 0.00 39.69 2.43
4583 7003 9.531942 TTACTCAACTTTACGACAGTATGAAAA 57.468 29.630 0.00 0.00 39.69 2.29
4584 7004 9.188588 CTTACTCAACTTTACGACAGTATGAAA 57.811 33.333 0.00 0.00 39.69 2.69
4585 7005 7.811236 CCTTACTCAACTTTACGACAGTATGAA 59.189 37.037 0.00 0.00 39.69 2.57
4586 7006 7.310664 CCTTACTCAACTTTACGACAGTATGA 58.689 38.462 0.00 0.00 39.69 2.15
4587 7007 6.034683 GCCTTACTCAACTTTACGACAGTATG 59.965 42.308 0.00 0.00 46.00 2.39
4588 7008 6.098017 GCCTTACTCAACTTTACGACAGTAT 58.902 40.000 0.00 0.00 32.12 2.12
4589 7009 5.009911 TGCCTTACTCAACTTTACGACAGTA 59.990 40.000 0.00 0.00 0.00 2.74
4590 7010 4.202182 TGCCTTACTCAACTTTACGACAGT 60.202 41.667 0.00 0.00 0.00 3.55
4591 7011 4.304110 TGCCTTACTCAACTTTACGACAG 58.696 43.478 0.00 0.00 0.00 3.51
4592 7012 4.325028 TGCCTTACTCAACTTTACGACA 57.675 40.909 0.00 0.00 0.00 4.35
4593 7013 5.662211 TTTGCCTTACTCAACTTTACGAC 57.338 39.130 0.00 0.00 0.00 4.34
4594 7014 6.483974 TGATTTTGCCTTACTCAACTTTACGA 59.516 34.615 0.00 0.00 0.00 3.43
4595 7015 6.664515 TGATTTTGCCTTACTCAACTTTACG 58.335 36.000 0.00 0.00 0.00 3.18
4596 7016 8.349983 TCTTGATTTTGCCTTACTCAACTTTAC 58.650 33.333 0.00 0.00 0.00 2.01
4597 7017 8.458573 TCTTGATTTTGCCTTACTCAACTTTA 57.541 30.769 0.00 0.00 0.00 1.85
4598 7018 7.346751 TCTTGATTTTGCCTTACTCAACTTT 57.653 32.000 0.00 0.00 0.00 2.66
4599 7019 6.959639 TCTTGATTTTGCCTTACTCAACTT 57.040 33.333 0.00 0.00 0.00 2.66
4600 7020 8.814038 ATATCTTGATTTTGCCTTACTCAACT 57.186 30.769 0.00 0.00 0.00 3.16
4606 7026 9.736023 CCACTTAATATCTTGATTTTGCCTTAC 57.264 33.333 0.00 0.00 0.00 2.34
4607 7027 9.693739 TCCACTTAATATCTTGATTTTGCCTTA 57.306 29.630 0.00 0.00 0.00 2.69
4608 7028 8.593945 TCCACTTAATATCTTGATTTTGCCTT 57.406 30.769 0.00 0.00 0.00 4.35
4609 7029 8.593945 TTCCACTTAATATCTTGATTTTGCCT 57.406 30.769 0.00 0.00 0.00 4.75
4610 7030 8.470002 ACTTCCACTTAATATCTTGATTTTGCC 58.530 33.333 0.00 0.00 0.00 4.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.