Multiple sequence alignment - TraesCS5B01G542600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G542600 chr5B 100.000 4211 0 0 1 4211 696192180 696187970 0.000000e+00 7777.0
1 TraesCS5B01G542600 chr5B 95.914 465 19 0 1547 2011 386559317 386559781 0.000000e+00 754.0
2 TraesCS5B01G542600 chr5B 88.889 117 7 2 1153 1269 696190962 696190852 5.680000e-29 139.0
3 TraesCS5B01G542600 chr5B 88.889 117 7 2 1219 1329 696191028 696190912 5.680000e-29 139.0
4 TraesCS5B01G542600 chr5B 82.143 112 14 5 1 107 679852131 679852241 1.610000e-14 91.6
5 TraesCS5B01G542600 chr5D 91.701 1928 71 45 2068 3950 554475230 554477113 0.000000e+00 2591.0
6 TraesCS5B01G542600 chr5D 85.455 1265 92 44 312 1547 554474001 554475202 0.000000e+00 1232.0
7 TraesCS5B01G542600 chr5D 97.656 384 8 1 3828 4211 554477098 554477480 0.000000e+00 658.0
8 TraesCS5B01G542600 chr5D 84.828 145 10 8 2028 2171 307392436 307392569 7.340000e-28 135.0
9 TraesCS5B01G542600 chr4A 87.063 1229 97 24 125 1329 614109399 614108209 0.000000e+00 1332.0
10 TraesCS5B01G542600 chr4A 90.693 1010 32 21 2518 3505 614107421 614106452 0.000000e+00 1288.0
11 TraesCS5B01G542600 chr4A 94.926 473 22 2 1541 2011 740020461 740020933 0.000000e+00 739.0
12 TraesCS5B01G542600 chr4A 95.238 441 6 2 2070 2495 614107921 614107481 0.000000e+00 684.0
13 TraesCS5B01G542600 chr4A 93.094 362 17 5 1153 1513 614108319 614107965 1.340000e-144 523.0
14 TraesCS5B01G542600 chr4A 81.301 615 82 17 3612 4211 614106445 614105849 6.370000e-128 468.0
15 TraesCS5B01G542600 chr4A 94.545 110 6 0 1 110 614109494 614109385 2.010000e-38 171.0
16 TraesCS5B01G542600 chr4A 90.000 120 6 2 1216 1329 614108388 614108269 2.620000e-32 150.0
17 TraesCS5B01G542600 chr4A 90.000 110 10 1 2 110 291308514 291308405 1.580000e-29 141.0
18 TraesCS5B01G542600 chr4A 84.828 145 10 8 2028 2171 615681981 615681848 7.340000e-28 135.0
19 TraesCS5B01G542600 chr4A 89.091 110 11 1 2 110 671930733 671930624 7.340000e-28 135.0
20 TraesCS5B01G542600 chr4A 81.356 118 14 4 1 110 630747940 630747823 5.800000e-14 89.8
21 TraesCS5B01G542600 chr7B 96.360 467 17 0 1547 2013 705810454 705810920 0.000000e+00 769.0
22 TraesCS5B01G542600 chr7B 96.146 467 18 0 1547 2013 745228753 745229219 0.000000e+00 763.0
23 TraesCS5B01G542600 chr3A 95.914 465 19 0 1547 2011 28571843 28571379 0.000000e+00 754.0
24 TraesCS5B01G542600 chr3A 88.506 87 7 3 3505 3590 63180621 63180537 7.450000e-18 102.0
25 TraesCS5B01G542600 chr3A 87.952 83 9 1 3509 3591 33422538 33422457 3.470000e-16 97.1
26 TraesCS5B01G542600 chr3A 88.732 71 7 1 3520 3590 15696156 15696087 7.500000e-13 86.1
27 TraesCS5B01G542600 chr3A 89.394 66 5 2 3505 3569 723564783 723564847 9.700000e-12 82.4
28 TraesCS5B01G542600 chr2A 95.532 470 20 1 1546 2014 36046025 36046494 0.000000e+00 750.0
29 TraesCS5B01G542600 chr2A 93.056 72 5 0 1367 1438 736866293 736866222 5.760000e-19 106.0
30 TraesCS5B01G542600 chr2A 93.056 72 5 0 1367 1438 770215172 770215243 5.760000e-19 106.0
31 TraesCS5B01G542600 chr4B 95.699 465 20 0 1547 2011 93511757 93512221 0.000000e+00 749.0
32 TraesCS5B01G542600 chr1B 95.522 469 20 1 1546 2013 55204637 55205105 0.000000e+00 749.0
33 TraesCS5B01G542600 chr1B 84.483 174 20 5 1277 1449 39999135 39999302 9.370000e-37 165.0
34 TraesCS5B01G542600 chr1B 90.000 110 10 1 2 110 334690826 334690717 1.580000e-29 141.0
35 TraesCS5B01G542600 chr1B 84.932 146 8 9 2028 2171 27275288 27275421 7.340000e-28 135.0
36 TraesCS5B01G542600 chr1B 87.273 110 13 1 2 110 31906340 31906231 1.590000e-24 124.0
37 TraesCS5B01G542600 chr3B 95.106 470 22 1 1544 2013 756313243 756313711 0.000000e+00 739.0
38 TraesCS5B01G542600 chr6D 84.828 145 10 8 2028 2171 349182761 349182628 7.340000e-28 135.0
39 TraesCS5B01G542600 chr6D 90.789 76 7 0 1367 1442 349183139 349183064 7.450000e-18 102.0
40 TraesCS5B01G542600 chr3D 84.828 145 10 8 2028 2171 604728696 604728829 7.340000e-28 135.0
41 TraesCS5B01G542600 chr2D 84.828 145 10 8 2028 2171 18577843 18577710 7.340000e-28 135.0
42 TraesCS5B01G542600 chr2D 84.828 145 10 8 2028 2171 44955968 44955835 7.340000e-28 135.0
43 TraesCS5B01G542600 chr1A 87.963 108 12 1 2 108 579859418 579859311 4.420000e-25 126.0
44 TraesCS5B01G542600 chr1A 93.056 72 5 0 1367 1438 5951254 5951325 5.760000e-19 106.0
45 TraesCS5B01G542600 chr1A 88.636 88 9 1 24 110 561198986 561199073 5.760000e-19 106.0
46 TraesCS5B01G542600 chr1D 92.105 76 6 0 1367 1442 393217807 393217732 1.600000e-19 108.0
47 TraesCS5B01G542600 chr1D 83.929 112 16 2 1 110 476562241 476562130 5.760000e-19 106.0
48 TraesCS5B01G542600 chrUn 91.781 73 6 0 1367 1439 29486137 29486209 7.450000e-18 102.0
49 TraesCS5B01G542600 chr5A 88.506 87 7 3 3505 3590 553463081 553463165 7.450000e-18 102.0
50 TraesCS5B01G542600 chr2B 85.542 83 9 3 3505 3586 308427348 308427428 2.700000e-12 84.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G542600 chr5B 696187970 696192180 4210 True 2685.000000 7777 92.592667 1 4211 3 chr5B.!!$R1 4210
1 TraesCS5B01G542600 chr5D 554474001 554477480 3479 False 1493.666667 2591 91.604000 312 4211 3 chr5D.!!$F2 3899
2 TraesCS5B01G542600 chr4A 614105849 614109494 3645 True 659.428571 1332 90.276286 1 4211 7 chr4A.!!$R5 4210

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
235 236 0.035439 GATTCTCCACTGCCGGGAAA 60.035 55.0 2.18 0.00 33.11 3.13 F
1097 1135 0.111446 TTGTGGCGGGAAGAATTGGA 59.889 50.0 0.00 0.00 0.00 3.53 F
1810 1921 0.037046 GGGTTGATTTTGGCCTGCTG 60.037 55.0 3.32 0.00 0.00 4.41 F
1811 1922 0.037046 GGTTGATTTTGGCCTGCTGG 60.037 55.0 3.32 5.03 0.00 4.85 F
1812 1923 0.037046 GTTGATTTTGGCCTGCTGGG 60.037 55.0 12.06 1.66 38.36 4.45 F
1999 2110 0.249322 ACGGCGAAATAGCGTGCTAT 60.249 50.0 16.62 8.54 40.63 2.97 F
2666 2830 0.539518 GAGGAGGAGGAAGAGGTTGC 59.460 60.0 0.00 0.00 0.00 4.17 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1791 1902 0.037046 CAGCAGGCCAAAATCAACCC 60.037 55.000 5.01 0.0 0.00 4.11 R
2989 3153 0.036577 GGGAGATGAGATGGGATGCG 60.037 60.000 0.00 0.0 0.00 4.73 R
2990 3154 0.036577 CGGGAGATGAGATGGGATGC 60.037 60.000 0.00 0.0 0.00 3.91 R
2991 3155 0.036577 GCGGGAGATGAGATGGGATG 60.037 60.000 0.00 0.0 0.00 3.51 R
3069 3239 0.461516 TCGAGCTCCGTCGTCAGTAT 60.462 55.000 8.47 0.0 40.93 2.12 R
3095 3265 1.795162 GCGTCCTGCATTTTCATTCCG 60.795 52.381 0.00 0.0 45.45 4.30 R
4117 4423 2.445427 CCATGTGCACCTAAACCATGA 58.555 47.619 15.69 0.0 35.96 3.07 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
82 83 7.269477 AGTAGTGAATAGTATACGTTCCCAC 57.731 40.000 16.42 12.75 0.00 4.61
95 96 3.707611 ACGTTCCCACTAGTATTATGGCA 59.292 43.478 0.00 0.00 31.66 4.92
96 97 4.162698 ACGTTCCCACTAGTATTATGGCAA 59.837 41.667 0.00 0.00 31.66 4.52
97 98 5.163237 ACGTTCCCACTAGTATTATGGCAAT 60.163 40.000 0.00 0.00 31.66 3.56
98 99 5.408604 CGTTCCCACTAGTATTATGGCAATC 59.591 44.000 0.00 0.00 31.66 2.67
99 100 5.499004 TCCCACTAGTATTATGGCAATCC 57.501 43.478 0.00 0.00 31.66 3.01
100 101 5.162637 TCCCACTAGTATTATGGCAATCCT 58.837 41.667 0.00 0.00 31.66 3.24
101 102 6.327781 TCCCACTAGTATTATGGCAATCCTA 58.672 40.000 0.00 0.00 31.66 2.94
102 103 6.790461 TCCCACTAGTATTATGGCAATCCTAA 59.210 38.462 0.00 0.00 31.66 2.69
103 104 6.879458 CCCACTAGTATTATGGCAATCCTAAC 59.121 42.308 0.00 0.00 31.66 2.34
104 105 6.879458 CCACTAGTATTATGGCAATCCTAACC 59.121 42.308 0.00 0.00 0.00 2.85
105 106 7.256691 CCACTAGTATTATGGCAATCCTAACCT 60.257 40.741 0.00 0.00 0.00 3.50
106 107 8.157476 CACTAGTATTATGGCAATCCTAACCTT 58.843 37.037 0.00 0.00 0.00 3.50
107 108 8.376270 ACTAGTATTATGGCAATCCTAACCTTC 58.624 37.037 0.00 0.00 0.00 3.46
108 109 7.394144 AGTATTATGGCAATCCTAACCTTCT 57.606 36.000 0.00 0.00 0.00 2.85
109 110 7.816411 AGTATTATGGCAATCCTAACCTTCTT 58.184 34.615 0.00 0.00 0.00 2.52
110 111 7.939588 AGTATTATGGCAATCCTAACCTTCTTC 59.060 37.037 0.00 0.00 0.00 2.87
111 112 4.870021 ATGGCAATCCTAACCTTCTTCT 57.130 40.909 0.00 0.00 0.00 2.85
112 113 4.657814 TGGCAATCCTAACCTTCTTCTT 57.342 40.909 0.00 0.00 0.00 2.52
113 114 4.998051 TGGCAATCCTAACCTTCTTCTTT 58.002 39.130 0.00 0.00 0.00 2.52
114 115 5.393866 TGGCAATCCTAACCTTCTTCTTTT 58.606 37.500 0.00 0.00 0.00 2.27
115 116 5.838521 TGGCAATCCTAACCTTCTTCTTTTT 59.161 36.000 0.00 0.00 0.00 1.94
165 166 7.867403 TCAACAAAAGAATTGAGAGTTAATGGC 59.133 33.333 0.00 0.00 31.29 4.40
169 170 8.919661 CAAAAGAATTGAGAGTTAATGGCTTTC 58.080 33.333 0.00 0.00 29.93 2.62
170 171 6.765915 AGAATTGAGAGTTAATGGCTTTCC 57.234 37.500 0.00 0.00 0.00 3.13
171 172 6.488715 AGAATTGAGAGTTAATGGCTTTCCT 58.511 36.000 0.00 0.00 0.00 3.36
194 195 5.883503 TTTTCACACCGTTAACTTTGAGT 57.116 34.783 3.71 0.00 0.00 3.41
196 197 4.395959 TCACACCGTTAACTTTGAGTCT 57.604 40.909 3.71 0.00 0.00 3.24
210 211 6.122277 ACTTTGAGTCTGTCCTTGATTTTCA 58.878 36.000 0.00 0.00 0.00 2.69
231 232 0.250234 TCAAGATTCTCCACTGCCGG 59.750 55.000 0.00 0.00 0.00 6.13
235 236 0.035439 GATTCTCCACTGCCGGGAAA 60.035 55.000 2.18 0.00 33.11 3.13
249 250 2.276201 CGGGAAATCTTCATGCACGTA 58.724 47.619 0.00 0.00 0.00 3.57
257 258 2.568062 TCTTCATGCACGTACCCCTAAA 59.432 45.455 0.00 0.00 0.00 1.85
258 259 3.008157 TCTTCATGCACGTACCCCTAAAA 59.992 43.478 0.00 0.00 0.00 1.52
263 264 1.734163 CACGTACCCCTAAAAGCCAG 58.266 55.000 0.00 0.00 0.00 4.85
281 282 2.625790 CCAGTGCTATGGAGAGGTAGTC 59.374 54.545 1.86 0.00 43.57 2.59
284 285 1.133761 TGCTATGGAGAGGTAGTCGCT 60.134 52.381 0.00 0.00 0.00 4.93
290 291 0.461961 GAGAGGTAGTCGCTGCCATT 59.538 55.000 14.27 4.15 38.73 3.16
291 292 1.681793 GAGAGGTAGTCGCTGCCATTA 59.318 52.381 14.27 0.00 38.73 1.90
292 293 2.100916 GAGAGGTAGTCGCTGCCATTAA 59.899 50.000 14.27 0.00 38.73 1.40
293 294 2.500098 AGAGGTAGTCGCTGCCATTAAA 59.500 45.455 14.27 0.00 38.73 1.52
294 295 3.134804 AGAGGTAGTCGCTGCCATTAAAT 59.865 43.478 14.27 0.00 38.73 1.40
295 296 3.467803 AGGTAGTCGCTGCCATTAAATC 58.532 45.455 14.27 0.00 38.73 2.17
296 297 2.548480 GGTAGTCGCTGCCATTAAATCC 59.452 50.000 8.62 0.00 36.26 3.01
297 298 2.717639 AGTCGCTGCCATTAAATCCT 57.282 45.000 0.00 0.00 0.00 3.24
307 308 7.436118 GCTGCCATTAAATCCTTGAATCATTA 58.564 34.615 0.00 0.00 0.00 1.90
309 310 9.419297 CTGCCATTAAATCCTTGAATCATTATG 57.581 33.333 0.00 0.00 0.00 1.90
316 317 8.757982 AAATCCTTGAATCATTATGTAGTGCT 57.242 30.769 0.00 0.00 0.00 4.40
330 331 5.405935 TGTAGTGCTTAAATCAGCTCTCA 57.594 39.130 0.75 0.00 41.60 3.27
367 368 1.258445 CGAGACACCCTAACCCAGCT 61.258 60.000 0.00 0.00 0.00 4.24
393 416 1.122019 GTGGCGGGTAGATCCAGGAT 61.122 60.000 0.00 0.00 38.11 3.24
431 455 1.075659 GGGGAGCAGAACTTTGCCT 59.924 57.895 0.00 0.00 45.18 4.75
472 496 5.627499 GGAAAGGAAAAATCCCATTTTGC 57.373 39.130 0.00 0.00 41.30 3.68
540 564 8.799367 ACTTTTATAAGACGTTTTTAGGCCATT 58.201 29.630 5.01 0.00 35.30 3.16
660 688 9.167239 GAAAGCATGATTTTCTTTATGATCTCG 57.833 33.333 10.76 0.00 32.98 4.04
715 745 7.812669 GTGGTAAATGAACATTCTTACCTTTGG 59.187 37.037 19.90 0.00 36.13 3.28
762 792 8.283291 CCAGAAAGATCTACTGTTGTTGTAAAC 58.717 37.037 20.76 0.00 40.13 2.01
809 839 2.096417 CGGCCAAGCGTTGCTATATAAC 60.096 50.000 2.24 0.00 38.25 1.89
849 879 2.045242 GGGAAAAGGAGACCGGCC 60.045 66.667 0.00 0.00 0.00 6.13
870 900 0.906066 GTTGGGTTTGGTTGGTTGGT 59.094 50.000 0.00 0.00 0.00 3.67
871 901 1.134640 GTTGGGTTTGGTTGGTTGGTC 60.135 52.381 0.00 0.00 0.00 4.02
872 902 1.038130 TGGGTTTGGTTGGTTGGTCG 61.038 55.000 0.00 0.00 0.00 4.79
873 903 1.066752 GGTTTGGTTGGTTGGTCGC 59.933 57.895 0.00 0.00 0.00 5.19
874 904 1.668101 GGTTTGGTTGGTTGGTCGCA 61.668 55.000 0.00 0.00 0.00 5.10
875 905 0.526739 GTTTGGTTGGTTGGTCGCAC 60.527 55.000 0.00 0.00 0.00 5.34
900 930 1.132881 ACTCCCTCCTCTCCATCCATC 60.133 57.143 0.00 0.00 0.00 3.51
901 931 0.178950 TCCCTCCTCTCCATCCATCG 60.179 60.000 0.00 0.00 0.00 3.84
902 932 1.670590 CCTCCTCTCCATCCATCGC 59.329 63.158 0.00 0.00 0.00 4.58
943 973 1.001746 CCCCATCATCGTCATCCTCAG 59.998 57.143 0.00 0.00 0.00 3.35
944 974 1.690893 CCCATCATCGTCATCCTCAGT 59.309 52.381 0.00 0.00 0.00 3.41
945 975 2.103771 CCCATCATCGTCATCCTCAGTT 59.896 50.000 0.00 0.00 0.00 3.16
948 978 2.739943 TCATCGTCATCCTCAGTTCCT 58.260 47.619 0.00 0.00 0.00 3.36
950 980 2.215942 TCGTCATCCTCAGTTCCTCA 57.784 50.000 0.00 0.00 0.00 3.86
951 981 1.819288 TCGTCATCCTCAGTTCCTCAC 59.181 52.381 0.00 0.00 0.00 3.51
952 982 1.546029 CGTCATCCTCAGTTCCTCACA 59.454 52.381 0.00 0.00 0.00 3.58
953 983 2.029020 CGTCATCCTCAGTTCCTCACAA 60.029 50.000 0.00 0.00 0.00 3.33
954 984 3.330267 GTCATCCTCAGTTCCTCACAAC 58.670 50.000 0.00 0.00 0.00 3.32
955 985 2.972021 TCATCCTCAGTTCCTCACAACA 59.028 45.455 0.00 0.00 0.00 3.33
957 987 1.416401 TCCTCAGTTCCTCACAACACC 59.584 52.381 0.00 0.00 0.00 4.16
958 988 1.543429 CCTCAGTTCCTCACAACACCC 60.543 57.143 0.00 0.00 0.00 4.61
959 989 1.140852 CTCAGTTCCTCACAACACCCA 59.859 52.381 0.00 0.00 0.00 4.51
960 990 1.134220 TCAGTTCCTCACAACACCCAC 60.134 52.381 0.00 0.00 0.00 4.61
961 991 1.134098 CAGTTCCTCACAACACCCACT 60.134 52.381 0.00 0.00 0.00 4.00
988 1026 2.050351 CGTCGTCTTCACTGCCGT 60.050 61.111 0.00 0.00 0.00 5.68
991 1029 3.470567 CGTCTTCACTGCCGTCGC 61.471 66.667 0.00 0.00 0.00 5.19
1028 1066 1.079543 CTCAAGGTCAGGAGCCACG 60.080 63.158 0.00 0.00 0.00 4.94
1029 1067 2.743928 CAAGGTCAGGAGCCACGC 60.744 66.667 0.00 0.00 0.00 5.34
1034 1072 2.357034 TCAGGAGCCACGCGTTTC 60.357 61.111 10.22 7.90 0.00 2.78
1035 1073 3.777925 CAGGAGCCACGCGTTTCG 61.778 66.667 10.22 0.14 45.38 3.46
1046 1084 4.099924 CGTTTCGCTGCTTCGTTG 57.900 55.556 0.00 0.00 0.00 4.10
1057 1095 0.657368 GCTTCGTTGTTCTTGCGTGG 60.657 55.000 0.00 0.00 0.00 4.94
1074 1112 1.000171 GTGGTTACTCGGTCGGTTTCT 60.000 52.381 0.00 0.00 0.00 2.52
1075 1113 1.688197 TGGTTACTCGGTCGGTTTCTT 59.312 47.619 0.00 0.00 0.00 2.52
1076 1114 2.064014 GGTTACTCGGTCGGTTTCTTG 58.936 52.381 0.00 0.00 0.00 3.02
1077 1115 2.546584 GGTTACTCGGTCGGTTTCTTGT 60.547 50.000 0.00 0.00 0.00 3.16
1097 1135 0.111446 TTGTGGCGGGAAGAATTGGA 59.889 50.000 0.00 0.00 0.00 3.53
1098 1136 0.331278 TGTGGCGGGAAGAATTGGAT 59.669 50.000 0.00 0.00 0.00 3.41
1099 1137 1.272425 TGTGGCGGGAAGAATTGGATT 60.272 47.619 0.00 0.00 0.00 3.01
1100 1138 2.025793 TGTGGCGGGAAGAATTGGATTA 60.026 45.455 0.00 0.00 0.00 1.75
1101 1139 2.618709 GTGGCGGGAAGAATTGGATTAG 59.381 50.000 0.00 0.00 0.00 1.73
1102 1140 2.507886 TGGCGGGAAGAATTGGATTAGA 59.492 45.455 0.00 0.00 0.00 2.10
1113 1151 7.018487 AGAATTGGATTAGAGAGATGATGGG 57.982 40.000 0.00 0.00 0.00 4.00
1194 1232 3.787001 GTGGAGGAGGCTTCCCCG 61.787 72.222 11.97 0.00 45.24 5.73
1440 1541 3.433615 ACTTGCTCAACGTAATCAAGCTC 59.566 43.478 15.21 0.00 38.06 4.09
1441 1542 3.319137 TGCTCAACGTAATCAAGCTCT 57.681 42.857 0.00 0.00 34.11 4.09
1474 1581 8.526147 AGCATTTTACAGTTTCTGCAGAATTAT 58.474 29.630 28.89 16.87 34.37 1.28
1479 1586 9.844790 TTTACAGTTTCTGCAGAATTATCAATG 57.155 29.630 28.89 23.12 34.37 2.82
1483 1590 5.762825 TTCTGCAGAATTATCAATGCTCC 57.237 39.130 25.16 0.00 39.42 4.70
1513 1620 5.674068 GCTCTGTTCATTTCAAGCATGAGAG 60.674 44.000 0.00 0.00 36.78 3.20
1514 1621 5.311265 TCTGTTCATTTCAAGCATGAGAGT 58.689 37.500 0.00 0.00 36.78 3.24
1515 1622 5.766670 TCTGTTCATTTCAAGCATGAGAGTT 59.233 36.000 0.00 0.00 36.78 3.01
1516 1623 6.005583 TGTTCATTTCAAGCATGAGAGTTC 57.994 37.500 0.00 0.00 36.78 3.01
1532 1643 8.954350 CATGAGAGTTCTTGGAAGATTTATGTT 58.046 33.333 0.00 0.00 34.49 2.71
1564 1675 9.763979 GTTTGAATCAATATTTTAAATAGCGCG 57.236 29.630 0.00 0.00 0.00 6.86
1565 1676 7.547285 TGAATCAATATTTTAAATAGCGCGC 57.453 32.000 26.66 26.66 0.00 6.86
1566 1677 7.359595 TGAATCAATATTTTAAATAGCGCGCT 58.640 30.769 38.01 38.01 0.00 5.92
1567 1678 8.499967 TGAATCAATATTTTAAATAGCGCGCTA 58.500 29.630 39.72 39.72 0.00 4.26
1568 1679 8.655378 AATCAATATTTTAAATAGCGCGCTAC 57.345 30.769 40.42 8.79 0.00 3.58
1569 1680 7.179927 TCAATATTTTAAATAGCGCGCTACA 57.820 32.000 40.42 24.82 0.00 2.74
1570 1681 7.631822 TCAATATTTTAAATAGCGCGCTACAA 58.368 30.769 40.42 29.39 0.00 2.41
1571 1682 8.123575 TCAATATTTTAAATAGCGCGCTACAAA 58.876 29.630 40.42 32.46 0.00 2.83
1572 1683 8.738554 CAATATTTTAAATAGCGCGCTACAAAA 58.261 29.630 40.42 36.72 0.00 2.44
1573 1684 9.458374 AATATTTTAAATAGCGCGCTACAAAAT 57.542 25.926 38.12 38.12 35.03 1.82
1577 1688 9.588774 TTTTAAATAGCGCGCTACAAAATATAG 57.411 29.630 40.42 0.00 0.00 1.31
1578 1689 4.842139 ATAGCGCGCTACAAAATATAGC 57.158 40.909 40.42 2.19 41.43 2.97
1585 1696 2.742589 GCTACAAAATATAGCGAGGCCC 59.257 50.000 0.00 0.00 36.02 5.80
1586 1697 3.557264 GCTACAAAATATAGCGAGGCCCT 60.557 47.826 0.00 0.00 36.02 5.19
1587 1698 3.577805 ACAAAATATAGCGAGGCCCTT 57.422 42.857 0.00 0.00 0.00 3.95
1588 1699 3.477530 ACAAAATATAGCGAGGCCCTTC 58.522 45.455 0.00 0.00 0.00 3.46
1589 1700 3.136626 ACAAAATATAGCGAGGCCCTTCT 59.863 43.478 0.00 0.00 0.00 2.85
1590 1701 3.686916 AAATATAGCGAGGCCCTTCTC 57.313 47.619 0.00 0.00 0.00 2.87
1591 1702 2.614134 ATATAGCGAGGCCCTTCTCT 57.386 50.000 0.00 0.00 0.00 3.10
1592 1703 3.741245 ATATAGCGAGGCCCTTCTCTA 57.259 47.619 0.00 0.00 0.00 2.43
1593 1704 2.383442 ATAGCGAGGCCCTTCTCTAA 57.617 50.000 0.00 0.00 0.00 2.10
1594 1705 2.154567 TAGCGAGGCCCTTCTCTAAA 57.845 50.000 0.00 0.00 0.00 1.85
1595 1706 0.537653 AGCGAGGCCCTTCTCTAAAC 59.462 55.000 0.00 0.00 0.00 2.01
1596 1707 0.806492 GCGAGGCCCTTCTCTAAACG 60.806 60.000 0.00 0.00 0.00 3.60
1597 1708 0.806492 CGAGGCCCTTCTCTAAACGC 60.806 60.000 0.00 0.00 0.00 4.84
1598 1709 0.537653 GAGGCCCTTCTCTAAACGCT 59.462 55.000 0.00 0.00 0.00 5.07
1599 1710 1.755380 GAGGCCCTTCTCTAAACGCTA 59.245 52.381 0.00 0.00 0.00 4.26
1600 1711 1.481363 AGGCCCTTCTCTAAACGCTAC 59.519 52.381 0.00 0.00 0.00 3.58
1601 1712 1.206371 GGCCCTTCTCTAAACGCTACA 59.794 52.381 0.00 0.00 0.00 2.74
1602 1713 2.269172 GCCCTTCTCTAAACGCTACAC 58.731 52.381 0.00 0.00 0.00 2.90
1623 1734 4.474113 ACGAGTTATAGCGTGCTAATAGC 58.526 43.478 5.12 5.12 42.82 2.97
1624 1735 3.538782 CGAGTTATAGCGTGCTAATAGCG 59.461 47.826 7.84 3.43 46.26 4.26
1625 1736 4.474113 GAGTTATAGCGTGCTAATAGCGT 58.526 43.478 7.84 0.00 46.26 5.07
1626 1737 4.227538 AGTTATAGCGTGCTAATAGCGTG 58.772 43.478 7.84 3.60 46.26 5.34
1627 1738 1.419374 ATAGCGTGCTAATAGCGTGC 58.581 50.000 17.23 17.23 46.26 5.34
1628 1739 1.141881 AGCGTGCTAATAGCGTGCT 59.858 52.632 20.49 20.49 46.26 4.40
1629 1740 2.881441 GCGTGCTAATAGCGTGCTA 58.119 52.632 17.53 3.73 46.26 3.49
1630 1741 1.419374 GCGTGCTAATAGCGTGCTAT 58.581 50.000 17.53 8.54 46.26 2.97
1631 1742 2.592194 GCGTGCTAATAGCGTGCTATA 58.408 47.619 14.33 0.00 46.26 1.31
1632 1743 3.179830 GCGTGCTAATAGCGTGCTATAT 58.820 45.455 14.33 7.94 46.26 0.86
1633 1744 3.612860 GCGTGCTAATAGCGTGCTATATT 59.387 43.478 14.33 5.11 46.26 1.28
1634 1745 4.091509 GCGTGCTAATAGCGTGCTATATTT 59.908 41.667 14.33 3.48 46.26 1.40
1635 1746 5.721510 GCGTGCTAATAGCGTGCTATATTTC 60.722 44.000 14.33 5.81 46.26 2.17
1636 1747 5.344933 CGTGCTAATAGCGTGCTATATTTCA 59.655 40.000 14.33 7.97 46.26 2.69
1637 1748 6.128929 CGTGCTAATAGCGTGCTATATTTCAA 60.129 38.462 14.33 0.00 46.26 2.69
1638 1749 7.568679 CGTGCTAATAGCGTGCTATATTTCAAA 60.569 37.037 14.33 0.00 46.26 2.69
1639 1750 8.067784 GTGCTAATAGCGTGCTATATTTCAAAA 58.932 33.333 14.33 0.00 46.26 2.44
1640 1751 8.783093 TGCTAATAGCGTGCTATATTTCAAAAT 58.217 29.630 14.33 0.00 46.26 1.82
1650 1761 7.678194 GCTATATTTCAAAATAGCGTTTGCA 57.322 32.000 7.92 0.00 46.23 4.08
1651 1762 8.114359 GCTATATTTCAAAATAGCGTTTGCAA 57.886 30.769 0.00 0.00 46.23 4.08
1652 1763 8.591312 GCTATATTTCAAAATAGCGTTTGCAAA 58.409 29.630 8.05 8.05 46.23 3.68
1709 1820 9.855021 TTAAGCAACTAAATTTTTCATAGGAGC 57.145 29.630 0.00 0.00 0.00 4.70
1710 1821 7.466746 AGCAACTAAATTTTTCATAGGAGCA 57.533 32.000 0.00 0.00 0.00 4.26
1711 1822 7.895759 AGCAACTAAATTTTTCATAGGAGCAA 58.104 30.769 0.00 0.00 0.00 3.91
1712 1823 8.031277 AGCAACTAAATTTTTCATAGGAGCAAG 58.969 33.333 0.00 0.00 0.00 4.01
1713 1824 7.201470 GCAACTAAATTTTTCATAGGAGCAAGC 60.201 37.037 0.00 0.00 0.00 4.01
1714 1825 7.466746 ACTAAATTTTTCATAGGAGCAAGCA 57.533 32.000 0.00 0.00 0.00 3.91
1715 1826 7.895759 ACTAAATTTTTCATAGGAGCAAGCAA 58.104 30.769 0.00 0.00 0.00 3.91
1716 1827 8.534496 ACTAAATTTTTCATAGGAGCAAGCAAT 58.466 29.630 0.00 0.00 0.00 3.56
1745 1856 8.498054 TGCATCTGATAAAAGGAGTAAGAAAG 57.502 34.615 0.00 0.00 0.00 2.62
1746 1857 7.066284 TGCATCTGATAAAAGGAGTAAGAAAGC 59.934 37.037 0.00 0.00 0.00 3.51
1747 1858 7.281999 GCATCTGATAAAAGGAGTAAGAAAGCT 59.718 37.037 0.00 0.00 0.00 3.74
1748 1859 9.823647 CATCTGATAAAAGGAGTAAGAAAGCTA 57.176 33.333 0.00 0.00 0.00 3.32
1750 1861 9.036980 TCTGATAAAAGGAGTAAGAAAGCTAGT 57.963 33.333 0.00 0.00 0.00 2.57
1751 1862 9.092876 CTGATAAAAGGAGTAAGAAAGCTAGTG 57.907 37.037 0.00 0.00 0.00 2.74
1752 1863 8.041323 TGATAAAAGGAGTAAGAAAGCTAGTGG 58.959 37.037 0.00 0.00 0.00 4.00
1753 1864 4.828072 AAGGAGTAAGAAAGCTAGTGGG 57.172 45.455 0.00 0.00 0.00 4.61
1754 1865 4.062490 AGGAGTAAGAAAGCTAGTGGGA 57.938 45.455 0.00 0.00 0.00 4.37
1755 1866 4.027437 AGGAGTAAGAAAGCTAGTGGGAG 58.973 47.826 0.00 0.00 0.00 4.30
1756 1867 4.024670 GGAGTAAGAAAGCTAGTGGGAGA 58.975 47.826 0.00 0.00 0.00 3.71
1757 1868 4.466726 GGAGTAAGAAAGCTAGTGGGAGAA 59.533 45.833 0.00 0.00 0.00 2.87
1758 1869 5.129650 GGAGTAAGAAAGCTAGTGGGAGAAT 59.870 44.000 0.00 0.00 0.00 2.40
1759 1870 6.228616 AGTAAGAAAGCTAGTGGGAGAATC 57.771 41.667 0.00 0.00 0.00 2.52
1760 1871 5.961421 AGTAAGAAAGCTAGTGGGAGAATCT 59.039 40.000 0.00 0.00 33.73 2.40
1761 1872 4.751767 AGAAAGCTAGTGGGAGAATCTG 57.248 45.455 0.00 0.00 33.73 2.90
1762 1873 4.357325 AGAAAGCTAGTGGGAGAATCTGA 58.643 43.478 0.00 0.00 33.73 3.27
1763 1874 4.968080 AGAAAGCTAGTGGGAGAATCTGAT 59.032 41.667 0.00 0.00 33.73 2.90
1764 1875 6.139671 AGAAAGCTAGTGGGAGAATCTGATA 58.860 40.000 0.00 0.00 33.73 2.15
1765 1876 6.613271 AGAAAGCTAGTGGGAGAATCTGATAA 59.387 38.462 0.00 0.00 33.73 1.75
1766 1877 6.814954 AAGCTAGTGGGAGAATCTGATAAA 57.185 37.500 0.00 0.00 33.73 1.40
1767 1878 6.814954 AGCTAGTGGGAGAATCTGATAAAA 57.185 37.500 0.00 0.00 33.73 1.52
1768 1879 6.825610 AGCTAGTGGGAGAATCTGATAAAAG 58.174 40.000 0.00 0.00 33.73 2.27
1769 1880 5.994668 GCTAGTGGGAGAATCTGATAAAAGG 59.005 44.000 0.00 0.00 33.73 3.11
1770 1881 6.183361 GCTAGTGGGAGAATCTGATAAAAGGA 60.183 42.308 0.00 0.00 33.73 3.36
1771 1882 6.245890 AGTGGGAGAATCTGATAAAAGGAG 57.754 41.667 0.00 0.00 33.73 3.69
1772 1883 5.728741 AGTGGGAGAATCTGATAAAAGGAGT 59.271 40.000 0.00 0.00 33.73 3.85
1773 1884 5.819901 GTGGGAGAATCTGATAAAAGGAGTG 59.180 44.000 0.00 0.00 33.73 3.51
1774 1885 5.726308 TGGGAGAATCTGATAAAAGGAGTGA 59.274 40.000 0.00 0.00 33.73 3.41
1775 1886 6.126940 TGGGAGAATCTGATAAAAGGAGTGAG 60.127 42.308 0.00 0.00 33.73 3.51
1776 1887 6.098982 GGGAGAATCTGATAAAAGGAGTGAGA 59.901 42.308 0.00 0.00 33.73 3.27
1777 1888 7.365117 GGGAGAATCTGATAAAAGGAGTGAGAA 60.365 40.741 0.00 0.00 33.73 2.87
1778 1889 8.043710 GGAGAATCTGATAAAAGGAGTGAGAAA 58.956 37.037 0.00 0.00 33.73 2.52
1779 1890 9.097257 GAGAATCTGATAAAAGGAGTGAGAAAG 57.903 37.037 0.00 0.00 0.00 2.62
1780 1891 7.552330 AGAATCTGATAAAAGGAGTGAGAAAGC 59.448 37.037 0.00 0.00 0.00 3.51
1781 1892 6.365970 TCTGATAAAAGGAGTGAGAAAGCT 57.634 37.500 0.00 0.00 0.00 3.74
1782 1893 7.482169 TCTGATAAAAGGAGTGAGAAAGCTA 57.518 36.000 0.00 0.00 0.00 3.32
1783 1894 7.551585 TCTGATAAAAGGAGTGAGAAAGCTAG 58.448 38.462 0.00 0.00 0.00 3.42
1784 1895 7.179338 TCTGATAAAAGGAGTGAGAAAGCTAGT 59.821 37.037 0.00 0.00 0.00 2.57
1785 1896 7.099764 TGATAAAAGGAGTGAGAAAGCTAGTG 58.900 38.462 0.00 0.00 0.00 2.74
1786 1897 5.552870 AAAAGGAGTGAGAAAGCTAGTGA 57.447 39.130 0.00 0.00 0.00 3.41
1787 1898 5.753721 AAAGGAGTGAGAAAGCTAGTGAT 57.246 39.130 0.00 0.00 0.00 3.06
1788 1899 5.337578 AAGGAGTGAGAAAGCTAGTGATC 57.662 43.478 0.00 0.00 0.00 2.92
1789 1900 3.380004 AGGAGTGAGAAAGCTAGTGATCG 59.620 47.826 0.00 0.00 0.00 3.69
1790 1901 3.129638 GGAGTGAGAAAGCTAGTGATCGT 59.870 47.826 0.00 0.00 0.00 3.73
1791 1902 4.101942 GAGTGAGAAAGCTAGTGATCGTG 58.898 47.826 0.00 0.00 0.00 4.35
1792 1903 3.119316 AGTGAGAAAGCTAGTGATCGTGG 60.119 47.826 0.00 0.00 0.00 4.94
1793 1904 2.166459 TGAGAAAGCTAGTGATCGTGGG 59.834 50.000 0.00 0.00 0.00 4.61
1794 1905 2.166664 GAGAAAGCTAGTGATCGTGGGT 59.833 50.000 0.00 0.00 0.00 4.51
1795 1906 2.567615 AGAAAGCTAGTGATCGTGGGTT 59.432 45.455 0.00 0.00 0.00 4.11
1796 1907 2.386661 AAGCTAGTGATCGTGGGTTG 57.613 50.000 0.00 0.00 0.00 3.77
1797 1908 1.557099 AGCTAGTGATCGTGGGTTGA 58.443 50.000 0.00 0.00 0.00 3.18
1798 1909 2.111384 AGCTAGTGATCGTGGGTTGAT 58.889 47.619 0.00 0.00 0.00 2.57
1799 1910 2.501723 AGCTAGTGATCGTGGGTTGATT 59.498 45.455 0.00 0.00 0.00 2.57
1800 1911 3.055094 AGCTAGTGATCGTGGGTTGATTT 60.055 43.478 0.00 0.00 0.00 2.17
1801 1912 3.689649 GCTAGTGATCGTGGGTTGATTTT 59.310 43.478 0.00 0.00 0.00 1.82
1802 1913 4.437390 GCTAGTGATCGTGGGTTGATTTTG 60.437 45.833 0.00 0.00 0.00 2.44
1803 1914 2.819608 AGTGATCGTGGGTTGATTTTGG 59.180 45.455 0.00 0.00 0.00 3.28
1804 1915 1.543802 TGATCGTGGGTTGATTTTGGC 59.456 47.619 0.00 0.00 0.00 4.52
1805 1916 0.894835 ATCGTGGGTTGATTTTGGCC 59.105 50.000 0.00 0.00 0.00 5.36
1806 1917 0.178975 TCGTGGGTTGATTTTGGCCT 60.179 50.000 3.32 0.00 0.00 5.19
1807 1918 0.038343 CGTGGGTTGATTTTGGCCTG 60.038 55.000 3.32 0.00 0.00 4.85
1808 1919 0.320683 GTGGGTTGATTTTGGCCTGC 60.321 55.000 3.32 0.00 0.00 4.85
1809 1920 0.471591 TGGGTTGATTTTGGCCTGCT 60.472 50.000 3.32 0.00 0.00 4.24
1810 1921 0.037046 GGGTTGATTTTGGCCTGCTG 60.037 55.000 3.32 0.00 0.00 4.41
1811 1922 0.037046 GGTTGATTTTGGCCTGCTGG 60.037 55.000 3.32 5.03 0.00 4.85
1812 1923 0.037046 GTTGATTTTGGCCTGCTGGG 60.037 55.000 12.06 1.66 38.36 4.45
1825 1936 4.290622 CTGGGCCAGCTGGGTTGT 62.291 66.667 33.46 0.00 39.65 3.32
1826 1937 4.601794 TGGGCCAGCTGGGTTGTG 62.602 66.667 33.46 8.00 39.65 3.33
1828 1939 4.982701 GGCCAGCTGGGTTGTGCT 62.983 66.667 33.46 0.00 40.54 4.40
1829 1940 2.914097 GCCAGCTGGGTTGTGCTT 60.914 61.111 33.46 0.00 37.44 3.91
1830 1941 1.603455 GCCAGCTGGGTTGTGCTTA 60.603 57.895 33.46 0.00 37.44 3.09
1831 1942 0.967380 GCCAGCTGGGTTGTGCTTAT 60.967 55.000 33.46 0.00 37.44 1.73
1832 1943 1.549203 CCAGCTGGGTTGTGCTTATT 58.451 50.000 26.14 0.00 37.44 1.40
1833 1944 1.895131 CCAGCTGGGTTGTGCTTATTT 59.105 47.619 26.14 0.00 37.44 1.40
1834 1945 2.094545 CCAGCTGGGTTGTGCTTATTTC 60.095 50.000 26.14 0.00 37.44 2.17
1835 1946 2.557924 CAGCTGGGTTGTGCTTATTTCA 59.442 45.455 5.57 0.00 37.44 2.69
1836 1947 2.821969 AGCTGGGTTGTGCTTATTTCAG 59.178 45.455 0.00 0.00 35.86 3.02
1837 1948 2.558359 GCTGGGTTGTGCTTATTTCAGT 59.442 45.455 0.00 0.00 0.00 3.41
1838 1949 3.005791 GCTGGGTTGTGCTTATTTCAGTT 59.994 43.478 0.00 0.00 0.00 3.16
1839 1950 4.501400 GCTGGGTTGTGCTTATTTCAGTTT 60.501 41.667 0.00 0.00 0.00 2.66
1840 1951 5.600696 CTGGGTTGTGCTTATTTCAGTTTT 58.399 37.500 0.00 0.00 0.00 2.43
1841 1952 5.355596 TGGGTTGTGCTTATTTCAGTTTTG 58.644 37.500 0.00 0.00 0.00 2.44
1842 1953 4.211164 GGGTTGTGCTTATTTCAGTTTTGC 59.789 41.667 0.00 0.00 0.00 3.68
1843 1954 4.808364 GGTTGTGCTTATTTCAGTTTTGCA 59.192 37.500 0.00 0.00 0.00 4.08
1844 1955 5.466393 GGTTGTGCTTATTTCAGTTTTGCAT 59.534 36.000 0.00 0.00 0.00 3.96
1845 1956 6.357198 GTTGTGCTTATTTCAGTTTTGCATG 58.643 36.000 0.00 0.00 0.00 4.06
1846 1957 4.989797 TGTGCTTATTTCAGTTTTGCATGG 59.010 37.500 0.00 0.00 0.00 3.66
1847 1958 4.990426 GTGCTTATTTCAGTTTTGCATGGT 59.010 37.500 0.00 0.00 0.00 3.55
1848 1959 5.119125 GTGCTTATTTCAGTTTTGCATGGTC 59.881 40.000 0.00 0.00 0.00 4.02
1849 1960 5.010922 TGCTTATTTCAGTTTTGCATGGTCT 59.989 36.000 0.00 0.00 0.00 3.85
1850 1961 5.346822 GCTTATTTCAGTTTTGCATGGTCTG 59.653 40.000 0.00 0.00 0.00 3.51
1858 1969 3.409856 GCATGGTCTGCGCGTTAT 58.590 55.556 8.43 0.00 41.97 1.89
1859 1970 2.600388 GCATGGTCTGCGCGTTATA 58.400 52.632 8.43 0.00 41.97 0.98
1860 1971 0.934496 GCATGGTCTGCGCGTTATAA 59.066 50.000 8.43 0.00 41.97 0.98
1861 1972 1.332904 GCATGGTCTGCGCGTTATAAC 60.333 52.381 8.43 5.47 41.97 1.89
1890 2001 3.891583 CGTTACAACGTTATAGCGTGTG 58.108 45.455 15.60 16.16 46.63 3.82
1891 2002 3.361644 CGTTACAACGTTATAGCGTGTGT 59.638 43.478 22.53 22.53 46.63 3.72
1892 2003 4.553045 CGTTACAACGTTATAGCGTGTGTA 59.447 41.667 15.60 19.25 46.63 2.90
1893 2004 5.274959 CGTTACAACGTTATAGCGTGTGTAG 60.275 44.000 22.52 15.34 46.63 2.74
1894 2005 2.919229 ACAACGTTATAGCGTGTGTAGC 59.081 45.455 15.60 0.00 45.00 3.58
1895 2006 1.818850 ACGTTATAGCGTGTGTAGCG 58.181 50.000 14.14 0.00 43.99 4.26
1902 2013 3.688136 CGTGTGTAGCGCGCTAAT 58.312 55.556 39.73 19.77 44.35 1.73
1903 2014 1.995991 CGTGTGTAGCGCGCTAATT 59.004 52.632 39.73 19.37 44.35 1.40
1904 2015 1.193644 CGTGTGTAGCGCGCTAATTA 58.806 50.000 39.73 26.04 44.35 1.40
1905 2016 1.072348 CGTGTGTAGCGCGCTAATTAC 60.072 52.381 39.73 33.48 44.35 1.89
1906 2017 1.072348 GTGTGTAGCGCGCTAATTACG 60.072 52.381 39.73 0.00 0.00 3.18
1933 2044 3.825812 GCCATAGCGTCCGATTTTG 57.174 52.632 0.00 0.00 0.00 2.44
1934 2045 0.317020 GCCATAGCGTCCGATTTTGC 60.317 55.000 0.00 0.00 0.00 3.68
1935 2046 0.307760 CCATAGCGTCCGATTTTGCC 59.692 55.000 0.00 0.00 0.00 4.52
1936 2047 1.013596 CATAGCGTCCGATTTTGCCA 58.986 50.000 0.00 0.00 0.00 4.92
1937 2048 1.400142 CATAGCGTCCGATTTTGCCAA 59.600 47.619 0.00 0.00 0.00 4.52
1938 2049 1.524848 TAGCGTCCGATTTTGCCAAA 58.475 45.000 0.00 0.00 0.00 3.28
1939 2050 0.671251 AGCGTCCGATTTTGCCAAAA 59.329 45.000 4.87 4.87 34.41 2.44
1940 2051 0.781787 GCGTCCGATTTTGCCAAAAC 59.218 50.000 4.45 0.00 32.37 2.43
1941 2052 1.049251 CGTCCGATTTTGCCAAAACG 58.951 50.000 4.45 10.56 32.37 3.60
1942 2053 1.598430 CGTCCGATTTTGCCAAAACGT 60.598 47.619 4.45 0.00 32.37 3.99
1943 2054 2.349627 CGTCCGATTTTGCCAAAACGTA 60.350 45.455 4.45 0.00 32.37 3.57
1944 2055 3.630101 GTCCGATTTTGCCAAAACGTAA 58.370 40.909 4.45 0.35 32.37 3.18
1945 2056 3.422876 GTCCGATTTTGCCAAAACGTAAC 59.577 43.478 4.45 7.88 32.37 2.50
1946 2057 2.402378 CCGATTTTGCCAAAACGTAACG 59.598 45.455 4.45 6.54 32.37 3.18
1947 2058 3.037324 CGATTTTGCCAAAACGTAACGT 58.963 40.909 4.45 0.00 43.97 3.99
1948 2059 3.116700 CGATTTTGCCAAAACGTAACGTC 59.883 43.478 4.45 0.00 39.99 4.34
1949 2060 3.761311 TTTTGCCAAAACGTAACGTCT 57.239 38.095 0.00 0.00 39.99 4.18
1950 2061 3.322230 TTTGCCAAAACGTAACGTCTC 57.678 42.857 0.00 0.00 39.99 3.36
1951 2062 1.219646 TGCCAAAACGTAACGTCTCC 58.780 50.000 0.00 0.00 39.99 3.71
1952 2063 0.514255 GCCAAAACGTAACGTCTCCC 59.486 55.000 0.00 0.00 39.99 4.30
1953 2064 1.875157 GCCAAAACGTAACGTCTCCCT 60.875 52.381 0.00 0.00 39.99 4.20
1954 2065 2.486918 CCAAAACGTAACGTCTCCCTT 58.513 47.619 0.00 0.00 39.99 3.95
1955 2066 2.477754 CCAAAACGTAACGTCTCCCTTC 59.522 50.000 0.00 0.00 39.99 3.46
1956 2067 2.445565 AAACGTAACGTCTCCCTTCC 57.554 50.000 0.00 0.00 39.99 3.46
1957 2068 1.331214 AACGTAACGTCTCCCTTCCA 58.669 50.000 0.00 0.00 39.99 3.53
1958 2069 1.331214 ACGTAACGTCTCCCTTCCAA 58.669 50.000 0.00 0.00 33.69 3.53
1959 2070 1.688197 ACGTAACGTCTCCCTTCCAAA 59.312 47.619 0.00 0.00 33.69 3.28
1960 2071 2.301009 ACGTAACGTCTCCCTTCCAAAT 59.699 45.455 0.00 0.00 33.69 2.32
1961 2072 3.511146 ACGTAACGTCTCCCTTCCAAATA 59.489 43.478 0.00 0.00 33.69 1.40
1962 2073 4.161001 ACGTAACGTCTCCCTTCCAAATAT 59.839 41.667 0.00 0.00 33.69 1.28
1963 2074 4.506654 CGTAACGTCTCCCTTCCAAATATG 59.493 45.833 0.00 0.00 0.00 1.78
1964 2075 2.919228 ACGTCTCCCTTCCAAATATGC 58.081 47.619 0.00 0.00 0.00 3.14
1965 2076 2.505819 ACGTCTCCCTTCCAAATATGCT 59.494 45.455 0.00 0.00 0.00 3.79
1966 2077 3.709653 ACGTCTCCCTTCCAAATATGCTA 59.290 43.478 0.00 0.00 0.00 3.49
1967 2078 4.348168 ACGTCTCCCTTCCAAATATGCTAT 59.652 41.667 0.00 0.00 0.00 2.97
1968 2079 5.542635 ACGTCTCCCTTCCAAATATGCTATA 59.457 40.000 0.00 0.00 0.00 1.31
1969 2080 6.042781 ACGTCTCCCTTCCAAATATGCTATAA 59.957 38.462 0.00 0.00 0.00 0.98
1970 2081 6.369065 CGTCTCCCTTCCAAATATGCTATAAC 59.631 42.308 0.00 0.00 0.00 1.89
1971 2082 6.655425 GTCTCCCTTCCAAATATGCTATAACC 59.345 42.308 0.00 0.00 0.00 2.85
1972 2083 5.556915 TCCCTTCCAAATATGCTATAACCG 58.443 41.667 0.00 0.00 0.00 4.44
1973 2084 4.156008 CCCTTCCAAATATGCTATAACCGC 59.844 45.833 0.00 0.00 0.00 5.68
1974 2085 4.759693 CCTTCCAAATATGCTATAACCGCA 59.240 41.667 0.00 0.00 42.25 5.69
1976 2087 6.071952 CCTTCCAAATATGCTATAACCGCATT 60.072 38.462 2.64 0.00 45.18 3.56
1977 2088 7.120579 CCTTCCAAATATGCTATAACCGCATTA 59.879 37.037 2.64 0.00 45.18 1.90
1978 2089 8.574251 TTCCAAATATGCTATAACCGCATTAT 57.426 30.769 2.64 0.00 45.18 1.28
1979 2090 9.674068 TTCCAAATATGCTATAACCGCATTATA 57.326 29.630 2.64 0.00 45.18 0.98
1980 2091 9.674068 TCCAAATATGCTATAACCGCATTATAA 57.326 29.630 2.64 0.00 45.18 0.98
1981 2092 9.716507 CCAAATATGCTATAACCGCATTATAAC 57.283 33.333 2.64 0.00 45.18 1.89
1982 2093 9.420966 CAAATATGCTATAACCGCATTATAACG 57.579 33.333 2.64 0.00 45.18 3.18
1993 2104 3.404564 GCATTATAACGGCGAAATAGCG 58.595 45.455 16.62 6.74 38.18 4.26
1994 2105 3.120786 GCATTATAACGGCGAAATAGCGT 60.121 43.478 16.62 0.00 38.18 5.07
1995 2106 4.382831 CATTATAACGGCGAAATAGCGTG 58.617 43.478 16.62 7.28 38.18 5.34
1996 2107 0.580104 ATAACGGCGAAATAGCGTGC 59.420 50.000 16.62 0.00 38.18 5.34
1997 2108 0.458889 TAACGGCGAAATAGCGTGCT 60.459 50.000 16.62 0.00 38.18 4.40
1998 2109 0.458889 AACGGCGAAATAGCGTGCTA 60.459 50.000 16.62 3.73 38.18 3.49
1999 2110 0.249322 ACGGCGAAATAGCGTGCTAT 60.249 50.000 16.62 8.54 40.63 2.97
2025 2136 6.720012 AAAATATTGGTTTGAATCGGTTGC 57.280 33.333 0.00 0.00 0.00 4.17
2045 2156 5.627499 TGCTAATTTGCTTCGATTTCACT 57.373 34.783 12.99 0.00 0.00 3.41
2057 2168 6.088616 GCTTCGATTTCACTGAAGAAATTTGG 59.911 38.462 0.00 7.13 45.51 3.28
2058 2169 6.012658 TCGATTTCACTGAAGAAATTTGGG 57.987 37.500 0.00 0.00 45.51 4.12
2059 2170 5.767665 TCGATTTCACTGAAGAAATTTGGGA 59.232 36.000 0.00 0.00 45.51 4.37
2060 2171 6.434028 TCGATTTCACTGAAGAAATTTGGGAT 59.566 34.615 0.00 0.00 45.51 3.85
2061 2172 6.749118 CGATTTCACTGAAGAAATTTGGGATC 59.251 38.462 0.00 0.00 45.51 3.36
2062 2173 6.975196 TTTCACTGAAGAAATTTGGGATCA 57.025 33.333 0.00 0.00 32.88 2.92
2063 2174 7.543359 TTTCACTGAAGAAATTTGGGATCAT 57.457 32.000 0.00 0.00 32.88 2.45
2064 2175 7.543359 TTCACTGAAGAAATTTGGGATCATT 57.457 32.000 0.00 0.00 0.00 2.57
2065 2176 7.543359 TCACTGAAGAAATTTGGGATCATTT 57.457 32.000 0.00 0.00 0.00 2.32
2066 2177 7.965718 TCACTGAAGAAATTTGGGATCATTTT 58.034 30.769 0.00 0.00 0.00 1.82
2067 2178 9.087871 TCACTGAAGAAATTTGGGATCATTTTA 57.912 29.630 0.00 0.00 0.00 1.52
2068 2179 9.709495 CACTGAAGAAATTTGGGATCATTTTAA 57.291 29.630 0.00 0.00 0.00 1.52
2069 2180 9.710900 ACTGAAGAAATTTGGGATCATTTTAAC 57.289 29.630 0.00 0.00 0.00 2.01
2070 2181 9.709495 CTGAAGAAATTTGGGATCATTTTAACA 57.291 29.630 0.00 0.00 0.00 2.41
2488 2614 0.937304 CCGCCATGATGAAGTAACCG 59.063 55.000 0.00 0.00 0.00 4.44
2495 2621 1.906574 TGATGAAGTAACCGCCTCCTT 59.093 47.619 0.00 0.00 0.00 3.36
2496 2622 2.093658 TGATGAAGTAACCGCCTCCTTC 60.094 50.000 0.00 0.00 35.11 3.46
2500 2626 1.476477 AGTAACCGCCTCCTTCTCTC 58.524 55.000 0.00 0.00 0.00 3.20
2502 2628 1.035932 TAACCGCCTCCTTCTCTCCG 61.036 60.000 0.00 0.00 0.00 4.63
2503 2629 3.532155 CCGCCTCCTTCTCTCCGG 61.532 72.222 0.00 0.00 0.00 5.14
2504 2630 4.214327 CGCCTCCTTCTCTCCGGC 62.214 72.222 0.00 0.00 37.40 6.13
2505 2631 3.077556 GCCTCCTTCTCTCCGGCA 61.078 66.667 0.00 0.00 40.41 5.69
2506 2632 2.439104 GCCTCCTTCTCTCCGGCAT 61.439 63.158 0.00 0.00 40.41 4.40
2507 2633 1.745264 CCTCCTTCTCTCCGGCATC 59.255 63.158 0.00 0.00 0.00 3.91
2508 2634 1.045350 CCTCCTTCTCTCCGGCATCA 61.045 60.000 0.00 0.00 0.00 3.07
2509 2635 0.826715 CTCCTTCTCTCCGGCATCAA 59.173 55.000 0.00 0.00 0.00 2.57
2510 2636 1.415659 CTCCTTCTCTCCGGCATCAAT 59.584 52.381 0.00 0.00 0.00 2.57
2511 2637 1.139654 TCCTTCTCTCCGGCATCAATG 59.860 52.381 0.00 0.00 0.00 2.82
2512 2638 1.590932 CTTCTCTCCGGCATCAATGG 58.409 55.000 0.00 0.00 0.00 3.16
2550 2713 7.445121 TCAATCTTGATATCGCTTGGTATTCT 58.555 34.615 0.00 0.00 31.01 2.40
2551 2714 7.386025 TCAATCTTGATATCGCTTGGTATTCTG 59.614 37.037 0.00 0.00 31.01 3.02
2666 2830 0.539518 GAGGAGGAGGAAGAGGTTGC 59.460 60.000 0.00 0.00 0.00 4.17
2757 2921 3.494336 CTGAAGAAGGCGCTGGCG 61.494 66.667 7.64 10.80 41.24 5.69
2760 2924 4.767255 AAGAAGGCGCTGGCGGAG 62.767 66.667 16.61 0.00 41.24 4.63
2977 3141 2.506438 GCGCCTCCGTGTGAGTAC 60.506 66.667 0.00 0.00 39.65 2.73
2978 3142 2.991076 GCGCCTCCGTGTGAGTACT 61.991 63.158 0.00 0.00 39.65 2.73
2979 3143 1.154016 CGCCTCCGTGTGAGTACTG 60.154 63.158 0.00 0.00 39.65 2.74
2980 3144 1.446272 GCCTCCGTGTGAGTACTGC 60.446 63.158 0.00 0.00 39.65 4.40
2981 3145 1.154016 CCTCCGTGTGAGTACTGCG 60.154 63.158 0.00 0.00 39.65 5.18
2982 3146 1.579932 CTCCGTGTGAGTACTGCGT 59.420 57.895 0.00 0.00 36.27 5.24
2983 3147 0.800631 CTCCGTGTGAGTACTGCGTA 59.199 55.000 0.00 0.00 36.27 4.42
2984 3148 0.800631 TCCGTGTGAGTACTGCGTAG 59.199 55.000 0.00 0.00 0.00 3.51
2985 3149 4.927481 CTCCGTGTGAGTACTGCGTAGC 62.927 59.091 0.00 0.00 45.64 3.58
3069 3239 7.520131 GCTCGCTGACATAGTAATCTAAGTACA 60.520 40.741 0.00 0.00 29.81 2.90
3095 3265 1.663074 GACGGAGCTCGATCATGGC 60.663 63.158 7.83 0.00 42.43 4.40
3098 3268 2.730733 GAGCTCGATCATGGCGGA 59.269 61.111 0.00 0.00 0.00 5.54
3099 3269 1.068083 GAGCTCGATCATGGCGGAA 59.932 57.895 0.00 0.00 0.00 4.30
3100 3270 0.320247 GAGCTCGATCATGGCGGAAT 60.320 55.000 0.00 0.00 0.00 3.01
3101 3271 0.602106 AGCTCGATCATGGCGGAATG 60.602 55.000 8.61 0.00 0.00 2.67
3102 3272 0.601046 GCTCGATCATGGCGGAATGA 60.601 55.000 8.61 0.00 40.73 2.57
3245 3433 1.793258 CCATGCCATCAGTCGATCTC 58.207 55.000 0.00 0.00 0.00 2.75
3259 3451 3.122948 GTCGATCTCGCAGTTTGCTTAAA 59.877 43.478 0.00 0.00 42.25 1.52
3380 3572 8.622948 TCGATCTGTATGTATCTATTGAGTGT 57.377 34.615 0.00 0.00 0.00 3.55
3381 3573 8.507249 TCGATCTGTATGTATCTATTGAGTGTG 58.493 37.037 0.00 0.00 0.00 3.82
3382 3574 8.293157 CGATCTGTATGTATCTATTGAGTGTGT 58.707 37.037 0.00 0.00 0.00 3.72
3383 3575 9.619316 GATCTGTATGTATCTATTGAGTGTGTC 57.381 37.037 0.00 0.00 0.00 3.67
3607 3799 6.311935 CCATCTTCGTGGTTTATTTCGTAAGA 59.688 38.462 0.00 0.00 38.52 2.10
3638 3831 4.824537 TGTGCTTGCATCTTACCTTTTGTA 59.175 37.500 0.00 0.00 0.00 2.41
3644 3837 7.495934 GCTTGCATCTTACCTTTTGTATCTCTA 59.504 37.037 0.00 0.00 0.00 2.43
3752 3947 2.739292 GAAGTCTATACGATTGCGGCA 58.261 47.619 0.00 0.00 43.17 5.69
3771 3966 2.164422 GCAAGCCTTGTATCTTTGGACC 59.836 50.000 6.28 0.00 0.00 4.46
3821 4016 6.900568 AAGCGAGATGAAAGTCTATTTCAG 57.099 37.500 8.77 0.00 41.13 3.02
3899 4198 9.875675 CTAAACTATGGTAGTATTCGAGTACAC 57.124 37.037 18.85 13.93 38.26 2.90
3936 4237 2.418368 AAACCGGCTATGAGATGCAA 57.582 45.000 0.00 0.00 0.00 4.08
4117 4423 4.154942 AGCAAAACCATCTTCTCCAACAT 58.845 39.130 0.00 0.00 0.00 2.71
4165 4471 2.028130 CCATCCTTCGCCTTGATGC 58.972 57.895 0.00 0.00 35.62 3.91
4173 4483 3.830192 GCCTTGATGCGGCCCAAG 61.830 66.667 19.11 19.11 41.73 3.61
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 2.801111 GCTCAAGCCTATTAACGCCTAC 59.199 50.000 0.00 0.00 34.31 3.18
9 10 1.954927 GCTCAAGCCTATTAACGCCT 58.045 50.000 0.00 0.00 34.31 5.52
82 83 8.598041 AGAAGGTTAGGATTGCCATAATACTAG 58.402 37.037 0.00 0.00 36.29 2.57
112 113 6.265876 AGAAGGTTAGAATTTACCGGCAAAAA 59.734 34.615 3.44 1.66 39.46 1.94
113 114 5.771165 AGAAGGTTAGAATTTACCGGCAAAA 59.229 36.000 3.44 4.39 39.46 2.44
114 115 5.318630 AGAAGGTTAGAATTTACCGGCAAA 58.681 37.500 0.00 0.02 39.46 3.68
115 116 4.913784 AGAAGGTTAGAATTTACCGGCAA 58.086 39.130 0.00 0.00 39.46 4.52
116 117 4.563140 AGAAGGTTAGAATTTACCGGCA 57.437 40.909 0.00 0.00 39.46 5.69
117 118 5.413523 TGAAAGAAGGTTAGAATTTACCGGC 59.586 40.000 0.00 0.00 39.46 6.13
118 119 7.040961 TGTTGAAAGAAGGTTAGAATTTACCGG 60.041 37.037 0.00 0.00 39.46 5.28
119 120 7.867752 TGTTGAAAGAAGGTTAGAATTTACCG 58.132 34.615 0.00 0.00 39.46 4.02
160 161 3.492482 CGGTGTGAAAAAGGAAAGCCATT 60.492 43.478 0.00 0.00 36.29 3.16
161 162 2.035832 CGGTGTGAAAAAGGAAAGCCAT 59.964 45.455 0.00 0.00 36.29 4.40
165 166 5.886992 AGTTAACGGTGTGAAAAAGGAAAG 58.113 37.500 0.00 0.00 0.00 2.62
169 170 5.642686 TCAAAGTTAACGGTGTGAAAAAGG 58.357 37.500 0.00 0.00 0.00 3.11
170 171 6.319399 ACTCAAAGTTAACGGTGTGAAAAAG 58.681 36.000 15.84 7.13 0.00 2.27
171 172 6.149807 AGACTCAAAGTTAACGGTGTGAAAAA 59.850 34.615 15.84 0.00 0.00 1.94
210 211 2.636830 CGGCAGTGGAGAATCTTGAAT 58.363 47.619 0.00 0.00 33.73 2.57
221 222 0.035439 GAAGATTTCCCGGCAGTGGA 60.035 55.000 0.00 0.00 0.00 4.02
231 232 2.354821 GGGTACGTGCATGAAGATTTCC 59.645 50.000 14.17 0.00 0.00 3.13
235 236 1.204146 AGGGGTACGTGCATGAAGAT 58.796 50.000 14.17 0.00 0.00 2.40
249 250 4.843624 GCACTGGCTTTTAGGGGT 57.156 55.556 0.00 0.00 36.96 4.95
263 264 1.001158 GCGACTACCTCTCCATAGCAC 60.001 57.143 0.00 0.00 0.00 4.40
268 269 1.395826 GGCAGCGACTACCTCTCCAT 61.396 60.000 0.00 0.00 0.00 3.41
270 271 1.395826 ATGGCAGCGACTACCTCTCC 61.396 60.000 0.00 0.00 0.00 3.71
281 282 3.781079 TTCAAGGATTTAATGGCAGCG 57.219 42.857 0.00 0.00 0.00 5.18
284 285 8.926374 ACATAATGATTCAAGGATTTAATGGCA 58.074 29.630 0.00 0.00 0.00 4.92
290 291 9.851686 AGCACTACATAATGATTCAAGGATTTA 57.148 29.630 0.00 0.00 0.00 1.40
291 292 8.757982 AGCACTACATAATGATTCAAGGATTT 57.242 30.769 0.00 0.00 0.00 2.17
292 293 8.757982 AAGCACTACATAATGATTCAAGGATT 57.242 30.769 0.00 0.00 0.00 3.01
293 294 9.851686 TTAAGCACTACATAATGATTCAAGGAT 57.148 29.630 0.00 0.00 0.00 3.24
294 295 9.679661 TTTAAGCACTACATAATGATTCAAGGA 57.320 29.630 0.00 0.00 0.00 3.36
307 308 5.814705 GTGAGAGCTGATTTAAGCACTACAT 59.185 40.000 0.00 0.00 43.07 2.29
309 310 4.568760 GGTGAGAGCTGATTTAAGCACTAC 59.431 45.833 0.00 0.00 43.07 2.73
316 317 1.739035 CGGCGGTGAGAGCTGATTTAA 60.739 52.381 0.00 0.00 43.29 1.52
343 344 0.462047 GGTTAGGGTGTCTCGCCATG 60.462 60.000 1.84 0.00 35.42 3.66
379 380 0.398318 GCCACATCCTGGATCTACCC 59.602 60.000 6.13 0.00 43.95 3.69
382 383 0.105709 TCGGCCACATCCTGGATCTA 60.106 55.000 6.13 0.00 43.95 1.98
393 416 1.048160 TCATAGCTCCATCGGCCACA 61.048 55.000 2.24 0.00 0.00 4.17
431 455 3.760693 CTTGAGCTAAGGCGGCTAA 57.239 52.632 13.71 0.00 44.37 3.09
461 485 2.627699 ACAAGACAACGCAAAATGGGAT 59.372 40.909 1.15 0.00 34.12 3.85
465 489 2.468777 GCAGACAAGACAACGCAAAATG 59.531 45.455 0.00 0.00 0.00 2.32
466 490 2.543653 GGCAGACAAGACAACGCAAAAT 60.544 45.455 0.00 0.00 0.00 1.82
472 496 4.685169 AATTATGGCAGACAAGACAACG 57.315 40.909 0.00 0.00 0.00 4.10
550 574 4.955925 TGTTTCTCAAGCGACTCAAAAA 57.044 36.364 0.00 0.00 0.00 1.94
551 575 4.908736 CTTGTTTCTCAAGCGACTCAAAA 58.091 39.130 0.00 0.00 45.37 2.44
552 576 4.536364 CTTGTTTCTCAAGCGACTCAAA 57.464 40.909 0.00 0.00 45.37 2.69
581 605 6.174720 TCATATTGCCTAGGAGAAAACGAT 57.825 37.500 14.75 1.24 0.00 3.73
687 717 8.650143 AAGGTAAGAATGTTCATTTACCACAT 57.350 30.769 19.68 9.37 44.72 3.21
762 792 4.589216 ATGTTTGGACACATCACTTTGG 57.411 40.909 0.00 0.00 38.91 3.28
829 859 2.436115 CGGTCTCCTTTTCCCGGC 60.436 66.667 0.00 0.00 36.84 6.13
849 879 0.179097 CAACCAACCAAACCCAACCG 60.179 55.000 0.00 0.00 0.00 4.44
856 886 0.526739 GTGCGACCAACCAACCAAAC 60.527 55.000 0.00 0.00 0.00 2.93
872 902 3.363844 GAGGAGGGAGTGCGAGTGC 62.364 68.421 0.00 0.00 43.20 4.40
873 903 1.662438 GAGAGGAGGGAGTGCGAGTG 61.662 65.000 0.00 0.00 0.00 3.51
874 904 1.379309 GAGAGGAGGGAGTGCGAGT 60.379 63.158 0.00 0.00 0.00 4.18
875 905 2.124693 GGAGAGGAGGGAGTGCGAG 61.125 68.421 0.00 0.00 0.00 5.03
900 930 0.107214 ATGATAAGGTGGTGGTGGCG 60.107 55.000 0.00 0.00 0.00 5.69
901 931 1.212935 AGATGATAAGGTGGTGGTGGC 59.787 52.381 0.00 0.00 0.00 5.01
902 932 3.545703 GAAGATGATAAGGTGGTGGTGG 58.454 50.000 0.00 0.00 0.00 4.61
943 973 1.134220 TGAGTGGGTGTTGTGAGGAAC 60.134 52.381 0.00 0.00 0.00 3.62
944 974 1.208706 TGAGTGGGTGTTGTGAGGAA 58.791 50.000 0.00 0.00 0.00 3.36
945 975 1.134220 GTTGAGTGGGTGTTGTGAGGA 60.134 52.381 0.00 0.00 0.00 3.71
948 978 1.092921 GCGTTGAGTGGGTGTTGTGA 61.093 55.000 0.00 0.00 0.00 3.58
950 980 1.822186 GGCGTTGAGTGGGTGTTGT 60.822 57.895 0.00 0.00 0.00 3.32
951 981 2.892334 CGGCGTTGAGTGGGTGTTG 61.892 63.158 0.00 0.00 0.00 3.33
952 982 2.590575 CGGCGTTGAGTGGGTGTT 60.591 61.111 0.00 0.00 0.00 3.32
953 983 4.619227 CCGGCGTTGAGTGGGTGT 62.619 66.667 6.01 0.00 0.00 4.16
1029 1067 0.315869 AACAACGAAGCAGCGAAACG 60.316 50.000 5.21 0.00 34.83 3.60
1034 1072 0.993746 GCAAGAACAACGAAGCAGCG 60.994 55.000 0.00 0.00 37.29 5.18
1035 1073 0.993746 CGCAAGAACAACGAAGCAGC 60.994 55.000 0.00 0.00 43.02 5.25
1043 1081 2.348218 CGAGTAACCACGCAAGAACAAC 60.348 50.000 0.00 0.00 43.62 3.32
1044 1082 1.862201 CGAGTAACCACGCAAGAACAA 59.138 47.619 0.00 0.00 43.62 2.83
1045 1083 1.493772 CGAGTAACCACGCAAGAACA 58.506 50.000 0.00 0.00 43.62 3.18
1046 1084 0.788391 CCGAGTAACCACGCAAGAAC 59.212 55.000 0.00 0.00 43.62 3.01
1057 1095 2.747436 ACAAGAAACCGACCGAGTAAC 58.253 47.619 0.00 0.00 0.00 2.50
1074 1112 1.698506 ATTCTTCCCGCCACAAACAA 58.301 45.000 0.00 0.00 0.00 2.83
1075 1113 1.339610 CAATTCTTCCCGCCACAAACA 59.660 47.619 0.00 0.00 0.00 2.83
1076 1114 1.336795 CCAATTCTTCCCGCCACAAAC 60.337 52.381 0.00 0.00 0.00 2.93
1077 1115 0.965439 CCAATTCTTCCCGCCACAAA 59.035 50.000 0.00 0.00 0.00 2.83
1097 1135 7.887495 GCTTAATTTCCCCATCATCTCTCTAAT 59.113 37.037 0.00 0.00 0.00 1.73
1098 1136 7.072961 AGCTTAATTTCCCCATCATCTCTCTAA 59.927 37.037 0.00 0.00 0.00 2.10
1099 1137 6.560304 AGCTTAATTTCCCCATCATCTCTCTA 59.440 38.462 0.00 0.00 0.00 2.43
1100 1138 5.372066 AGCTTAATTTCCCCATCATCTCTCT 59.628 40.000 0.00 0.00 0.00 3.10
1101 1139 5.629125 AGCTTAATTTCCCCATCATCTCTC 58.371 41.667 0.00 0.00 0.00 3.20
1102 1140 5.659849 AGCTTAATTTCCCCATCATCTCT 57.340 39.130 0.00 0.00 0.00 3.10
1275 1376 3.254892 CTTAACGCTTGTCTTCTCCTCC 58.745 50.000 0.00 0.00 0.00 4.30
1284 1385 1.359459 CCTCGGCCTTAACGCTTGTC 61.359 60.000 0.00 0.00 0.00 3.18
1395 1496 3.452264 TCATCATGGTGGAGAAGTCGAAT 59.548 43.478 6.03 0.00 0.00 3.34
1440 1541 6.854892 CAGAAACTGTAAAATGCTTCAGTGAG 59.145 38.462 0.00 0.00 40.36 3.51
1441 1542 6.728200 CAGAAACTGTAAAATGCTTCAGTGA 58.272 36.000 0.00 0.00 40.36 3.41
1474 1581 1.536766 CAGAGCAAAACGGAGCATTGA 59.463 47.619 0.00 0.00 0.00 2.57
1479 1586 0.944386 TGAACAGAGCAAAACGGAGC 59.056 50.000 0.00 0.00 0.00 4.70
1483 1590 4.085415 GCTTGAAATGAACAGAGCAAAACG 60.085 41.667 0.00 0.00 0.00 3.60
1538 1649 9.763979 CGCGCTATTTAAAATATTGATTCAAAC 57.236 29.630 5.56 0.00 0.00 2.93
1539 1650 8.476142 GCGCGCTATTTAAAATATTGATTCAAA 58.524 29.630 26.67 0.00 0.00 2.69
1540 1651 7.860373 AGCGCGCTATTTAAAATATTGATTCAA 59.140 29.630 35.79 0.75 0.00 2.69
1541 1652 7.359595 AGCGCGCTATTTAAAATATTGATTCA 58.640 30.769 35.79 0.00 0.00 2.57
1542 1653 7.781763 AGCGCGCTATTTAAAATATTGATTC 57.218 32.000 35.79 0.00 0.00 2.52
1543 1654 8.286800 TGTAGCGCGCTATTTAAAATATTGATT 58.713 29.630 39.99 12.91 0.00 2.57
1544 1655 7.802738 TGTAGCGCGCTATTTAAAATATTGAT 58.197 30.769 39.99 13.28 0.00 2.57
1545 1656 7.179927 TGTAGCGCGCTATTTAAAATATTGA 57.820 32.000 39.99 15.24 0.00 2.57
1546 1657 7.830217 TTGTAGCGCGCTATTTAAAATATTG 57.170 32.000 39.99 0.00 0.00 1.90
1547 1658 8.844441 TTTTGTAGCGCGCTATTTAAAATATT 57.156 26.923 39.99 14.84 0.00 1.28
1551 1662 9.588774 CTATATTTTGTAGCGCGCTATTTAAAA 57.411 29.630 35.30 35.30 0.00 1.52
1552 1663 7.742963 GCTATATTTTGTAGCGCGCTATTTAAA 59.257 33.333 39.99 33.75 35.68 1.52
1553 1664 7.231607 GCTATATTTTGTAGCGCGCTATTTAA 58.768 34.615 39.99 30.67 35.68 1.52
1554 1665 6.758149 GCTATATTTTGTAGCGCGCTATTTA 58.242 36.000 39.99 26.76 35.68 1.40
1555 1666 5.618561 GCTATATTTTGTAGCGCGCTATTT 58.381 37.500 39.99 23.11 35.68 1.40
1556 1667 5.204673 GCTATATTTTGTAGCGCGCTATT 57.795 39.130 39.99 24.33 35.68 1.73
1557 1668 4.842139 GCTATATTTTGTAGCGCGCTAT 57.158 40.909 39.99 28.03 35.68 2.97
1564 1675 2.742589 GGGCCTCGCTATATTTTGTAGC 59.257 50.000 0.84 0.00 40.83 3.58
1565 1676 4.273148 AGGGCCTCGCTATATTTTGTAG 57.727 45.455 0.00 0.00 0.00 2.74
1566 1677 4.347000 AGAAGGGCCTCGCTATATTTTGTA 59.653 41.667 6.46 0.00 0.00 2.41
1567 1678 3.136626 AGAAGGGCCTCGCTATATTTTGT 59.863 43.478 6.46 0.00 0.00 2.83
1568 1679 3.744660 AGAAGGGCCTCGCTATATTTTG 58.255 45.455 6.46 0.00 0.00 2.44
1569 1680 3.648545 AGAGAAGGGCCTCGCTATATTTT 59.351 43.478 6.46 0.00 38.19 1.82
1570 1681 3.243724 AGAGAAGGGCCTCGCTATATTT 58.756 45.455 6.46 0.00 38.19 1.40
1571 1682 2.896039 AGAGAAGGGCCTCGCTATATT 58.104 47.619 6.46 0.00 38.19 1.28
1572 1683 2.614134 AGAGAAGGGCCTCGCTATAT 57.386 50.000 6.46 0.00 38.19 0.86
1573 1684 3.520691 TTAGAGAAGGGCCTCGCTATA 57.479 47.619 6.46 6.57 38.19 1.31
1574 1685 2.365941 GTTTAGAGAAGGGCCTCGCTAT 59.634 50.000 6.46 7.67 38.19 2.97
1575 1686 1.755380 GTTTAGAGAAGGGCCTCGCTA 59.245 52.381 6.46 9.32 38.19 4.26
1576 1687 0.537653 GTTTAGAGAAGGGCCTCGCT 59.462 55.000 6.46 7.69 38.19 4.93
1577 1688 0.806492 CGTTTAGAGAAGGGCCTCGC 60.806 60.000 6.46 1.59 38.19 5.03
1578 1689 0.806492 GCGTTTAGAGAAGGGCCTCG 60.806 60.000 6.46 4.29 38.19 4.63
1579 1690 0.537653 AGCGTTTAGAGAAGGGCCTC 59.462 55.000 6.46 0.00 0.00 4.70
1580 1691 1.481363 GTAGCGTTTAGAGAAGGGCCT 59.519 52.381 0.00 0.00 0.00 5.19
1581 1692 1.206371 TGTAGCGTTTAGAGAAGGGCC 59.794 52.381 0.00 0.00 0.00 5.80
1582 1693 2.269172 GTGTAGCGTTTAGAGAAGGGC 58.731 52.381 0.00 0.00 0.00 5.19
1583 1694 2.163010 TCGTGTAGCGTTTAGAGAAGGG 59.837 50.000 0.00 0.00 42.13 3.95
1584 1695 3.119919 ACTCGTGTAGCGTTTAGAGAAGG 60.120 47.826 8.17 0.00 42.13 3.46
1585 1696 4.080969 ACTCGTGTAGCGTTTAGAGAAG 57.919 45.455 8.17 0.00 42.13 2.85
1586 1697 4.494350 AACTCGTGTAGCGTTTAGAGAA 57.506 40.909 8.17 0.00 42.13 2.87
1587 1698 5.808042 ATAACTCGTGTAGCGTTTAGAGA 57.192 39.130 8.17 0.00 42.13 3.10
1588 1699 5.620417 GCTATAACTCGTGTAGCGTTTAGAG 59.380 44.000 0.00 1.14 42.13 2.43
1589 1700 5.505286 GCTATAACTCGTGTAGCGTTTAGA 58.495 41.667 0.00 0.00 42.13 2.10
1590 1701 5.786533 GCTATAACTCGTGTAGCGTTTAG 57.213 43.478 0.00 0.00 42.13 1.85
1601 1712 4.474113 GCTATTAGCACGCTATAACTCGT 58.526 43.478 10.83 0.00 41.89 4.18
1602 1713 3.538782 CGCTATTAGCACGCTATAACTCG 59.461 47.826 15.64 0.00 42.58 4.18
1603 1714 4.321217 CACGCTATTAGCACGCTATAACTC 59.679 45.833 15.64 0.00 42.58 3.01
1604 1715 4.227538 CACGCTATTAGCACGCTATAACT 58.772 43.478 15.64 0.00 42.58 2.24
1605 1716 3.181543 GCACGCTATTAGCACGCTATAAC 60.182 47.826 15.64 0.00 42.58 1.89
1606 1717 2.984471 GCACGCTATTAGCACGCTATAA 59.016 45.455 15.64 0.00 42.58 0.98
1607 1718 2.228103 AGCACGCTATTAGCACGCTATA 59.772 45.455 21.18 0.00 43.75 1.31
1608 1719 1.000163 AGCACGCTATTAGCACGCTAT 60.000 47.619 21.18 5.12 43.75 2.97
1609 1720 0.384309 AGCACGCTATTAGCACGCTA 59.616 50.000 21.18 0.00 43.75 4.26
1610 1721 0.384309 TAGCACGCTATTAGCACGCT 59.616 50.000 24.16 24.16 46.18 5.07
1611 1722 1.419374 ATAGCACGCTATTAGCACGC 58.581 50.000 15.64 15.38 42.58 5.34
1612 1723 5.344933 TGAAATATAGCACGCTATTAGCACG 59.655 40.000 16.26 6.71 42.58 5.34
1613 1724 6.706055 TGAAATATAGCACGCTATTAGCAC 57.294 37.500 16.26 4.63 42.58 4.40
1614 1725 7.722795 TTTGAAATATAGCACGCTATTAGCA 57.277 32.000 16.26 7.84 42.58 3.49
1618 1729 7.957484 CGCTATTTTGAAATATAGCACGCTATT 59.043 33.333 16.26 0.13 46.05 1.73
1619 1730 7.117812 ACGCTATTTTGAAATATAGCACGCTAT 59.882 33.333 20.90 15.45 46.05 2.97
1620 1731 6.422701 ACGCTATTTTGAAATATAGCACGCTA 59.577 34.615 20.90 0.39 46.05 4.26
1621 1732 5.236478 ACGCTATTTTGAAATATAGCACGCT 59.764 36.000 20.90 0.00 46.05 5.07
1622 1733 5.440685 ACGCTATTTTGAAATATAGCACGC 58.559 37.500 20.90 7.13 46.05 5.34
1623 1734 7.563296 GCAAACGCTATTTTGAAATATAGCACG 60.563 37.037 20.90 13.46 46.05 5.34
1624 1735 7.219917 TGCAAACGCTATTTTGAAATATAGCAC 59.780 33.333 20.90 11.53 46.05 4.40
1625 1736 7.254137 TGCAAACGCTATTTTGAAATATAGCA 58.746 30.769 20.90 9.33 46.05 3.49
1626 1737 7.678194 TGCAAACGCTATTTTGAAATATAGC 57.322 32.000 15.68 15.68 43.60 2.97
1683 1794 9.855021 GCTCCTATGAAAAATTTAGTTGCTTAA 57.145 29.630 0.00 0.00 0.00 1.85
1684 1795 9.019656 TGCTCCTATGAAAAATTTAGTTGCTTA 57.980 29.630 0.00 0.00 0.00 3.09
1685 1796 7.895759 TGCTCCTATGAAAAATTTAGTTGCTT 58.104 30.769 0.00 0.00 0.00 3.91
1686 1797 7.466746 TGCTCCTATGAAAAATTTAGTTGCT 57.533 32.000 0.00 0.00 0.00 3.91
1687 1798 7.201470 GCTTGCTCCTATGAAAAATTTAGTTGC 60.201 37.037 0.00 0.00 0.00 4.17
1688 1799 7.814107 TGCTTGCTCCTATGAAAAATTTAGTTG 59.186 33.333 0.00 0.00 0.00 3.16
1689 1800 7.895759 TGCTTGCTCCTATGAAAAATTTAGTT 58.104 30.769 0.00 0.00 0.00 2.24
1690 1801 7.466746 TGCTTGCTCCTATGAAAAATTTAGT 57.533 32.000 0.00 0.00 0.00 2.24
1691 1802 8.937634 ATTGCTTGCTCCTATGAAAAATTTAG 57.062 30.769 0.00 0.00 0.00 1.85
1719 1830 9.118300 CTTTCTTACTCCTTTTATCAGATGCAT 57.882 33.333 0.00 0.00 0.00 3.96
1720 1831 7.066284 GCTTTCTTACTCCTTTTATCAGATGCA 59.934 37.037 0.00 0.00 0.00 3.96
1721 1832 7.281999 AGCTTTCTTACTCCTTTTATCAGATGC 59.718 37.037 0.00 0.00 0.00 3.91
1722 1833 8.729805 AGCTTTCTTACTCCTTTTATCAGATG 57.270 34.615 0.00 0.00 0.00 2.90
1724 1835 9.036980 ACTAGCTTTCTTACTCCTTTTATCAGA 57.963 33.333 0.00 0.00 0.00 3.27
1725 1836 9.092876 CACTAGCTTTCTTACTCCTTTTATCAG 57.907 37.037 0.00 0.00 0.00 2.90
1726 1837 8.041323 CCACTAGCTTTCTTACTCCTTTTATCA 58.959 37.037 0.00 0.00 0.00 2.15
1727 1838 7.496263 CCCACTAGCTTTCTTACTCCTTTTATC 59.504 40.741 0.00 0.00 0.00 1.75
1728 1839 7.182206 TCCCACTAGCTTTCTTACTCCTTTTAT 59.818 37.037 0.00 0.00 0.00 1.40
1729 1840 6.499350 TCCCACTAGCTTTCTTACTCCTTTTA 59.501 38.462 0.00 0.00 0.00 1.52
1730 1841 5.309806 TCCCACTAGCTTTCTTACTCCTTTT 59.690 40.000 0.00 0.00 0.00 2.27
1731 1842 4.844655 TCCCACTAGCTTTCTTACTCCTTT 59.155 41.667 0.00 0.00 0.00 3.11
1732 1843 4.426704 TCCCACTAGCTTTCTTACTCCTT 58.573 43.478 0.00 0.00 0.00 3.36
1733 1844 4.027437 CTCCCACTAGCTTTCTTACTCCT 58.973 47.826 0.00 0.00 0.00 3.69
1734 1845 4.024670 TCTCCCACTAGCTTTCTTACTCC 58.975 47.826 0.00 0.00 0.00 3.85
1735 1846 5.662674 TTCTCCCACTAGCTTTCTTACTC 57.337 43.478 0.00 0.00 0.00 2.59
1736 1847 5.961421 AGATTCTCCCACTAGCTTTCTTACT 59.039 40.000 0.00 0.00 0.00 2.24
1737 1848 6.045955 CAGATTCTCCCACTAGCTTTCTTAC 58.954 44.000 0.00 0.00 0.00 2.34
1738 1849 5.958380 TCAGATTCTCCCACTAGCTTTCTTA 59.042 40.000 0.00 0.00 0.00 2.10
1739 1850 4.780021 TCAGATTCTCCCACTAGCTTTCTT 59.220 41.667 0.00 0.00 0.00 2.52
1740 1851 4.357325 TCAGATTCTCCCACTAGCTTTCT 58.643 43.478 0.00 0.00 0.00 2.52
1741 1852 4.744795 TCAGATTCTCCCACTAGCTTTC 57.255 45.455 0.00 0.00 0.00 2.62
1742 1853 6.814954 TTATCAGATTCTCCCACTAGCTTT 57.185 37.500 0.00 0.00 0.00 3.51
1743 1854 6.814954 TTTATCAGATTCTCCCACTAGCTT 57.185 37.500 0.00 0.00 0.00 3.74
1744 1855 6.183361 CCTTTTATCAGATTCTCCCACTAGCT 60.183 42.308 0.00 0.00 0.00 3.32
1745 1856 5.994668 CCTTTTATCAGATTCTCCCACTAGC 59.005 44.000 0.00 0.00 0.00 3.42
1746 1857 7.070571 ACTCCTTTTATCAGATTCTCCCACTAG 59.929 40.741 0.00 0.00 0.00 2.57
1747 1858 6.903534 ACTCCTTTTATCAGATTCTCCCACTA 59.096 38.462 0.00 0.00 0.00 2.74
1748 1859 5.728741 ACTCCTTTTATCAGATTCTCCCACT 59.271 40.000 0.00 0.00 0.00 4.00
1749 1860 5.819901 CACTCCTTTTATCAGATTCTCCCAC 59.180 44.000 0.00 0.00 0.00 4.61
1750 1861 5.726308 TCACTCCTTTTATCAGATTCTCCCA 59.274 40.000 0.00 0.00 0.00 4.37
1751 1862 6.098982 TCTCACTCCTTTTATCAGATTCTCCC 59.901 42.308 0.00 0.00 0.00 4.30
1752 1863 7.118496 TCTCACTCCTTTTATCAGATTCTCC 57.882 40.000 0.00 0.00 0.00 3.71
1753 1864 9.097257 CTTTCTCACTCCTTTTATCAGATTCTC 57.903 37.037 0.00 0.00 0.00 2.87
1754 1865 7.552330 GCTTTCTCACTCCTTTTATCAGATTCT 59.448 37.037 0.00 0.00 0.00 2.40
1755 1866 7.552330 AGCTTTCTCACTCCTTTTATCAGATTC 59.448 37.037 0.00 0.00 0.00 2.52
1756 1867 7.401246 AGCTTTCTCACTCCTTTTATCAGATT 58.599 34.615 0.00 0.00 0.00 2.40
1757 1868 6.956497 AGCTTTCTCACTCCTTTTATCAGAT 58.044 36.000 0.00 0.00 0.00 2.90
1758 1869 6.365970 AGCTTTCTCACTCCTTTTATCAGA 57.634 37.500 0.00 0.00 0.00 3.27
1759 1870 7.277539 CACTAGCTTTCTCACTCCTTTTATCAG 59.722 40.741 0.00 0.00 0.00 2.90
1760 1871 7.039011 TCACTAGCTTTCTCACTCCTTTTATCA 60.039 37.037 0.00 0.00 0.00 2.15
1761 1872 7.324178 TCACTAGCTTTCTCACTCCTTTTATC 58.676 38.462 0.00 0.00 0.00 1.75
1762 1873 7.246171 TCACTAGCTTTCTCACTCCTTTTAT 57.754 36.000 0.00 0.00 0.00 1.40
1763 1874 6.665992 TCACTAGCTTTCTCACTCCTTTTA 57.334 37.500 0.00 0.00 0.00 1.52
1764 1875 5.552870 TCACTAGCTTTCTCACTCCTTTT 57.447 39.130 0.00 0.00 0.00 2.27
1765 1876 5.623368 CGATCACTAGCTTTCTCACTCCTTT 60.623 44.000 0.00 0.00 0.00 3.11
1766 1877 4.142271 CGATCACTAGCTTTCTCACTCCTT 60.142 45.833 0.00 0.00 0.00 3.36
1767 1878 3.380004 CGATCACTAGCTTTCTCACTCCT 59.620 47.826 0.00 0.00 0.00 3.69
1768 1879 3.129638 ACGATCACTAGCTTTCTCACTCC 59.870 47.826 0.00 0.00 0.00 3.85
1769 1880 4.101942 CACGATCACTAGCTTTCTCACTC 58.898 47.826 0.00 0.00 0.00 3.51
1770 1881 3.119316 CCACGATCACTAGCTTTCTCACT 60.119 47.826 0.00 0.00 0.00 3.41
1771 1882 3.182967 CCACGATCACTAGCTTTCTCAC 58.817 50.000 0.00 0.00 0.00 3.51
1772 1883 2.166459 CCCACGATCACTAGCTTTCTCA 59.834 50.000 0.00 0.00 0.00 3.27
1773 1884 2.166664 ACCCACGATCACTAGCTTTCTC 59.833 50.000 0.00 0.00 0.00 2.87
1774 1885 2.180276 ACCCACGATCACTAGCTTTCT 58.820 47.619 0.00 0.00 0.00 2.52
1775 1886 2.673368 CAACCCACGATCACTAGCTTTC 59.327 50.000 0.00 0.00 0.00 2.62
1776 1887 2.301870 TCAACCCACGATCACTAGCTTT 59.698 45.455 0.00 0.00 0.00 3.51
1777 1888 1.899814 TCAACCCACGATCACTAGCTT 59.100 47.619 0.00 0.00 0.00 3.74
1778 1889 1.557099 TCAACCCACGATCACTAGCT 58.443 50.000 0.00 0.00 0.00 3.32
1779 1890 2.604046 ATCAACCCACGATCACTAGC 57.396 50.000 0.00 0.00 0.00 3.42
1780 1891 4.094887 CCAAAATCAACCCACGATCACTAG 59.905 45.833 0.00 0.00 0.00 2.57
1781 1892 4.006989 CCAAAATCAACCCACGATCACTA 58.993 43.478 0.00 0.00 0.00 2.74
1782 1893 2.819608 CCAAAATCAACCCACGATCACT 59.180 45.455 0.00 0.00 0.00 3.41
1783 1894 2.671070 GCCAAAATCAACCCACGATCAC 60.671 50.000 0.00 0.00 0.00 3.06
1784 1895 1.543802 GCCAAAATCAACCCACGATCA 59.456 47.619 0.00 0.00 0.00 2.92
1785 1896 1.135112 GGCCAAAATCAACCCACGATC 60.135 52.381 0.00 0.00 0.00 3.69
1786 1897 0.894835 GGCCAAAATCAACCCACGAT 59.105 50.000 0.00 0.00 0.00 3.73
1787 1898 0.178975 AGGCCAAAATCAACCCACGA 60.179 50.000 5.01 0.00 0.00 4.35
1788 1899 0.038343 CAGGCCAAAATCAACCCACG 60.038 55.000 5.01 0.00 0.00 4.94
1789 1900 0.320683 GCAGGCCAAAATCAACCCAC 60.321 55.000 5.01 0.00 0.00 4.61
1790 1901 0.471591 AGCAGGCCAAAATCAACCCA 60.472 50.000 5.01 0.00 0.00 4.51
1791 1902 0.037046 CAGCAGGCCAAAATCAACCC 60.037 55.000 5.01 0.00 0.00 4.11
1792 1903 0.037046 CCAGCAGGCCAAAATCAACC 60.037 55.000 5.01 0.00 0.00 3.77
1793 1904 0.037046 CCCAGCAGGCCAAAATCAAC 60.037 55.000 5.01 0.00 0.00 3.18
1794 1905 2.364353 CCCAGCAGGCCAAAATCAA 58.636 52.632 5.01 0.00 0.00 2.57
1795 1906 4.116926 CCCAGCAGGCCAAAATCA 57.883 55.556 5.01 0.00 0.00 2.57
1808 1919 4.290622 ACAACCCAGCTGGCCCAG 62.291 66.667 28.39 16.10 37.83 4.45
1809 1920 4.601794 CACAACCCAGCTGGCCCA 62.602 66.667 28.39 0.00 37.83 5.36
1811 1922 4.982701 AGCACAACCCAGCTGGCC 62.983 66.667 28.39 10.06 40.13 5.36
1812 1923 0.967380 ATAAGCACAACCCAGCTGGC 60.967 55.000 28.39 14.71 41.70 4.85
1813 1924 1.549203 AATAAGCACAACCCAGCTGG 58.451 50.000 26.87 26.87 41.70 4.85
1814 1925 2.557924 TGAAATAAGCACAACCCAGCTG 59.442 45.455 6.78 6.78 41.70 4.24
1815 1926 2.821969 CTGAAATAAGCACAACCCAGCT 59.178 45.455 0.00 0.00 44.31 4.24
1816 1927 2.558359 ACTGAAATAAGCACAACCCAGC 59.442 45.455 0.00 0.00 0.00 4.85
1817 1928 4.853924 AACTGAAATAAGCACAACCCAG 57.146 40.909 0.00 0.00 0.00 4.45
1818 1929 5.355596 CAAAACTGAAATAAGCACAACCCA 58.644 37.500 0.00 0.00 0.00 4.51
1819 1930 4.211164 GCAAAACTGAAATAAGCACAACCC 59.789 41.667 0.00 0.00 0.00 4.11
1820 1931 4.808364 TGCAAAACTGAAATAAGCACAACC 59.192 37.500 0.00 0.00 0.00 3.77
1821 1932 5.964887 TGCAAAACTGAAATAAGCACAAC 57.035 34.783 0.00 0.00 0.00 3.32
1822 1933 5.466058 CCATGCAAAACTGAAATAAGCACAA 59.534 36.000 0.00 0.00 32.92 3.33
1823 1934 4.989797 CCATGCAAAACTGAAATAAGCACA 59.010 37.500 0.00 0.00 32.92 4.57
1824 1935 4.990426 ACCATGCAAAACTGAAATAAGCAC 59.010 37.500 0.00 0.00 32.92 4.40
1825 1936 5.010922 AGACCATGCAAAACTGAAATAAGCA 59.989 36.000 0.00 0.00 34.78 3.91
1826 1937 5.346822 CAGACCATGCAAAACTGAAATAAGC 59.653 40.000 0.00 0.00 0.00 3.09
1827 1938 6.939551 CAGACCATGCAAAACTGAAATAAG 57.060 37.500 0.00 0.00 0.00 1.73
1841 1952 4.768508 CGTTATAACGCGCAGACCATGC 62.769 54.545 23.72 0.00 46.49 4.06
1842 1953 1.071502 CGTTATAACGCGCAGACCATG 60.072 52.381 23.72 0.00 46.06 3.66
1843 1954 1.205657 CGTTATAACGCGCAGACCAT 58.794 50.000 23.72 0.00 46.06 3.55
1844 1955 2.656137 CGTTATAACGCGCAGACCA 58.344 52.632 23.72 0.00 46.06 4.02
1870 1981 4.891277 ACACACGCTATAACGTTGTAAC 57.109 40.909 11.99 3.02 45.75 2.50
1871 1982 4.558470 GCTACACACGCTATAACGTTGTAA 59.442 41.667 11.99 0.00 45.75 2.41
1872 1983 4.097714 GCTACACACGCTATAACGTTGTA 58.902 43.478 11.99 7.93 45.75 2.41
1873 1984 2.919229 GCTACACACGCTATAACGTTGT 59.081 45.455 11.99 6.97 45.75 3.32
1874 1985 2.036004 CGCTACACACGCTATAACGTTG 60.036 50.000 11.99 4.29 45.75 4.10
1875 1986 2.179589 CGCTACACACGCTATAACGTT 58.820 47.619 5.88 5.88 45.75 3.99
1885 1996 1.072348 GTAATTAGCGCGCTACACACG 60.072 52.381 38.48 0.00 0.00 4.49
1886 1997 1.072348 CGTAATTAGCGCGCTACACAC 60.072 52.381 38.48 30.12 0.00 3.82
1887 1998 1.193644 CGTAATTAGCGCGCTACACA 58.806 50.000 38.48 25.57 0.00 3.72
1888 1999 0.111835 GCGTAATTAGCGCGCTACAC 60.112 55.000 38.48 30.75 46.55 2.90
1889 2000 2.209872 GCGTAATTAGCGCGCTACA 58.790 52.632 38.48 27.91 46.55 2.74
1915 2026 0.317020 GCAAAATCGGACGCTATGGC 60.317 55.000 0.00 0.00 0.00 4.40
1916 2027 0.307760 GGCAAAATCGGACGCTATGG 59.692 55.000 0.00 0.00 0.00 2.74
1917 2028 1.013596 TGGCAAAATCGGACGCTATG 58.986 50.000 0.00 0.00 0.00 2.23
1918 2029 1.745232 TTGGCAAAATCGGACGCTAT 58.255 45.000 0.00 0.00 0.00 2.97
1919 2030 1.524848 TTTGGCAAAATCGGACGCTA 58.475 45.000 10.83 0.00 0.00 4.26
1920 2031 0.671251 TTTTGGCAAAATCGGACGCT 59.329 45.000 20.81 0.00 0.00 5.07
1921 2032 0.781787 GTTTTGGCAAAATCGGACGC 59.218 50.000 26.41 9.68 32.22 5.19
1922 2033 1.049251 CGTTTTGGCAAAATCGGACG 58.951 50.000 26.41 21.13 35.70 4.79
1923 2034 2.128367 ACGTTTTGGCAAAATCGGAC 57.872 45.000 31.17 20.08 40.93 4.79
1924 2035 3.630101 GTTACGTTTTGGCAAAATCGGA 58.370 40.909 31.17 26.46 40.93 4.55
1925 2036 2.402378 CGTTACGTTTTGGCAAAATCGG 59.598 45.455 31.17 24.07 40.93 4.18
1926 2037 3.037324 ACGTTACGTTTTGGCAAAATCG 58.963 40.909 28.83 28.83 41.87 3.34
1927 2038 4.284485 AGACGTTACGTTTTGGCAAAATC 58.716 39.130 26.41 17.74 41.37 2.17
1928 2039 4.284485 GAGACGTTACGTTTTGGCAAAAT 58.716 39.130 26.41 15.14 41.37 1.82
1929 2040 3.487209 GGAGACGTTACGTTTTGGCAAAA 60.487 43.478 20.81 20.81 41.37 2.44
1930 2041 2.031930 GGAGACGTTACGTTTTGGCAAA 59.968 45.455 12.82 8.93 41.37 3.68
1931 2042 1.598601 GGAGACGTTACGTTTTGGCAA 59.401 47.619 12.82 0.00 41.37 4.52
1932 2043 1.219646 GGAGACGTTACGTTTTGGCA 58.780 50.000 12.82 0.00 41.37 4.92
1933 2044 0.514255 GGGAGACGTTACGTTTTGGC 59.486 55.000 12.82 0.00 41.37 4.52
1934 2045 2.159327 AGGGAGACGTTACGTTTTGG 57.841 50.000 12.82 0.00 41.37 3.28
1935 2046 2.477754 GGAAGGGAGACGTTACGTTTTG 59.522 50.000 12.82 0.00 41.37 2.44
1936 2047 2.102925 TGGAAGGGAGACGTTACGTTTT 59.897 45.455 12.82 3.52 42.05 2.43
1937 2048 1.688197 TGGAAGGGAGACGTTACGTTT 59.312 47.619 12.82 6.17 42.05 3.60
1938 2049 1.331214 TGGAAGGGAGACGTTACGTT 58.669 50.000 12.82 1.89 42.05 3.99
1939 2050 1.331214 TTGGAAGGGAGACGTTACGT 58.669 50.000 11.12 11.12 42.05 3.57
1940 2051 2.443887 TTTGGAAGGGAGACGTTACG 57.556 50.000 2.19 2.19 42.05 3.18
1941 2052 4.272748 GCATATTTGGAAGGGAGACGTTAC 59.727 45.833 0.00 0.00 38.82 2.50
1942 2053 4.163458 AGCATATTTGGAAGGGAGACGTTA 59.837 41.667 0.00 0.00 38.82 3.18
1943 2054 3.054361 AGCATATTTGGAAGGGAGACGTT 60.054 43.478 0.00 0.00 42.01 3.99
1944 2055 2.505819 AGCATATTTGGAAGGGAGACGT 59.494 45.455 0.00 0.00 0.00 4.34
1945 2056 3.199880 AGCATATTTGGAAGGGAGACG 57.800 47.619 0.00 0.00 0.00 4.18
1946 2057 6.655425 GGTTATAGCATATTTGGAAGGGAGAC 59.345 42.308 0.00 0.00 0.00 3.36
1947 2058 6.520061 CGGTTATAGCATATTTGGAAGGGAGA 60.520 42.308 0.00 0.00 0.00 3.71
1948 2059 5.643777 CGGTTATAGCATATTTGGAAGGGAG 59.356 44.000 0.00 0.00 0.00 4.30
1949 2060 5.556915 CGGTTATAGCATATTTGGAAGGGA 58.443 41.667 0.00 0.00 0.00 4.20
1950 2061 4.156008 GCGGTTATAGCATATTTGGAAGGG 59.844 45.833 0.00 0.00 34.19 3.95
1951 2062 4.759693 TGCGGTTATAGCATATTTGGAAGG 59.240 41.667 0.00 0.00 40.01 3.46
1952 2063 5.940192 TGCGGTTATAGCATATTTGGAAG 57.060 39.130 0.00 0.00 40.01 3.46
1972 2083 3.120786 ACGCTATTTCGCCGTTATAATGC 60.121 43.478 0.00 0.00 0.00 3.56
1973 2084 4.382831 CACGCTATTTCGCCGTTATAATG 58.617 43.478 0.00 0.00 32.18 1.90
1974 2085 3.120786 GCACGCTATTTCGCCGTTATAAT 60.121 43.478 0.00 0.00 32.18 1.28
1975 2086 2.219216 GCACGCTATTTCGCCGTTATAA 59.781 45.455 0.00 0.00 32.18 0.98
1976 2087 1.788308 GCACGCTATTTCGCCGTTATA 59.212 47.619 0.00 0.00 32.18 0.98
1977 2088 0.580104 GCACGCTATTTCGCCGTTAT 59.420 50.000 0.00 0.00 32.18 1.89
1978 2089 0.458889 AGCACGCTATTTCGCCGTTA 60.459 50.000 0.00 0.00 32.18 3.18
1979 2090 0.458889 TAGCACGCTATTTCGCCGTT 60.459 50.000 0.00 0.00 32.18 4.44
1980 2091 0.249322 ATAGCACGCTATTTCGCCGT 60.249 50.000 5.72 0.00 35.92 5.68
1981 2092 0.859232 AATAGCACGCTATTTCGCCG 59.141 50.000 16.70 0.00 44.18 6.46
1989 2100 9.509855 CAAACCAATATTTTAAATAGCACGCTA 57.490 29.630 0.39 0.39 0.00 4.26
1990 2101 8.247562 TCAAACCAATATTTTAAATAGCACGCT 58.752 29.630 3.73 0.00 0.00 5.07
1991 2102 8.401046 TCAAACCAATATTTTAAATAGCACGC 57.599 30.769 3.73 0.00 0.00 5.34
1999 2110 8.713271 GCAACCGATTCAAACCAATATTTTAAA 58.287 29.630 0.00 0.00 0.00 1.52
2000 2111 8.091449 AGCAACCGATTCAAACCAATATTTTAA 58.909 29.630 0.00 0.00 0.00 1.52
2001 2112 7.607250 AGCAACCGATTCAAACCAATATTTTA 58.393 30.769 0.00 0.00 0.00 1.52
2002 2113 6.463360 AGCAACCGATTCAAACCAATATTTT 58.537 32.000 0.00 0.00 0.00 1.82
2003 2114 6.036577 AGCAACCGATTCAAACCAATATTT 57.963 33.333 0.00 0.00 0.00 1.40
2004 2115 5.659440 AGCAACCGATTCAAACCAATATT 57.341 34.783 0.00 0.00 0.00 1.28
2005 2116 6.767524 TTAGCAACCGATTCAAACCAATAT 57.232 33.333 0.00 0.00 0.00 1.28
2006 2117 6.767524 ATTAGCAACCGATTCAAACCAATA 57.232 33.333 0.00 0.00 0.00 1.90
2007 2118 5.659440 ATTAGCAACCGATTCAAACCAAT 57.341 34.783 0.00 0.00 0.00 3.16
2008 2119 5.461032 AATTAGCAACCGATTCAAACCAA 57.539 34.783 0.00 0.00 0.00 3.67
2009 2120 5.226396 CAAATTAGCAACCGATTCAAACCA 58.774 37.500 0.00 0.00 0.00 3.67
2010 2121 4.091365 GCAAATTAGCAACCGATTCAAACC 59.909 41.667 0.00 0.00 0.00 3.27
2011 2122 4.923281 AGCAAATTAGCAACCGATTCAAAC 59.077 37.500 0.00 0.00 36.85 2.93
2025 2136 7.521529 TCTTCAGTGAAATCGAAGCAAATTAG 58.478 34.615 7.06 0.00 36.83 1.73
2067 2178 8.623030 CCACAAAATTCAGGATTCAAATTTGTT 58.377 29.630 17.47 7.04 33.95 2.83
2068 2179 7.255208 GCCACAAAATTCAGGATTCAAATTTGT 60.255 33.333 17.47 0.00 33.95 2.83
2069 2180 7.079475 GCCACAAAATTCAGGATTCAAATTTG 58.921 34.615 12.15 12.15 33.95 2.32
2070 2181 6.073112 CGCCACAAAATTCAGGATTCAAATTT 60.073 34.615 0.00 0.00 34.86 1.82
2071 2182 5.409214 CGCCACAAAATTCAGGATTCAAATT 59.591 36.000 0.00 0.00 0.00 1.82
2072 2183 4.931002 CGCCACAAAATTCAGGATTCAAAT 59.069 37.500 0.00 0.00 0.00 2.32
2073 2184 4.202202 ACGCCACAAAATTCAGGATTCAAA 60.202 37.500 0.00 0.00 0.00 2.69
2074 2185 3.320541 ACGCCACAAAATTCAGGATTCAA 59.679 39.130 0.00 0.00 0.00 2.69
2075 2186 2.890311 ACGCCACAAAATTCAGGATTCA 59.110 40.909 0.00 0.00 0.00 2.57
2076 2187 3.244976 CACGCCACAAAATTCAGGATTC 58.755 45.455 0.00 0.00 0.00 2.52
2158 2269 1.591059 CTCCGCCATCTCGCTGAAG 60.591 63.158 0.00 0.00 0.00 3.02
2495 2621 1.146930 GCCATTGATGCCGGAGAGA 59.853 57.895 5.05 0.00 0.00 3.10
2496 2622 2.249535 CGCCATTGATGCCGGAGAG 61.250 63.158 5.05 0.00 0.00 3.20
2500 2626 2.640989 CATCGCCATTGATGCCGG 59.359 61.111 0.00 0.00 39.33 6.13
2504 2630 1.280746 GACCGCATCGCCATTGATG 59.719 57.895 0.00 0.00 46.78 3.07
2505 2631 2.246739 CGACCGCATCGCCATTGAT 61.247 57.895 0.00 0.00 45.52 2.57
2506 2632 2.889988 CGACCGCATCGCCATTGA 60.890 61.111 0.00 0.00 45.52 2.57
2515 2641 2.602257 TCAAGATTGATCGACCGCAT 57.398 45.000 0.00 0.00 31.01 4.73
2516 2642 2.602257 ATCAAGATTGATCGACCGCA 57.398 45.000 2.17 0.00 44.17 5.69
2537 2700 1.899814 ACCTGACAGAATACCAAGCGA 59.100 47.619 3.32 0.00 0.00 4.93
2540 2703 4.466370 TCCAGTACCTGACAGAATACCAAG 59.534 45.833 3.32 0.59 32.44 3.61
2546 2709 3.056749 GTCGTTCCAGTACCTGACAGAAT 60.057 47.826 3.32 0.00 32.44 2.40
2550 2713 0.963962 GGTCGTTCCAGTACCTGACA 59.036 55.000 0.00 0.00 32.44 3.58
2551 2714 0.245813 GGGTCGTTCCAGTACCTGAC 59.754 60.000 0.00 0.00 38.11 3.51
2757 2921 3.319198 TCCTTGTCCACGCCCTCC 61.319 66.667 0.00 0.00 0.00 4.30
2760 2924 3.934391 CTCGTCCTTGTCCACGCCC 62.934 68.421 0.00 0.00 35.93 6.13
2980 3144 1.004560 ATGGGATGCGATGGCTACG 60.005 57.895 0.15 0.00 40.82 3.51
2981 3145 0.322975 AGATGGGATGCGATGGCTAC 59.677 55.000 0.15 0.00 40.82 3.58
2982 3146 0.610174 GAGATGGGATGCGATGGCTA 59.390 55.000 0.15 0.00 40.82 3.93
2983 3147 1.374190 GAGATGGGATGCGATGGCT 59.626 57.895 0.15 0.00 40.82 4.75
2984 3148 0.322277 ATGAGATGGGATGCGATGGC 60.322 55.000 0.00 0.00 40.52 4.40
2985 3149 1.278413 AGATGAGATGGGATGCGATGG 59.722 52.381 0.00 0.00 0.00 3.51
2986 3150 2.619147 GAGATGAGATGGGATGCGATG 58.381 52.381 0.00 0.00 0.00 3.84
2987 3151 1.554160 GGAGATGAGATGGGATGCGAT 59.446 52.381 0.00 0.00 0.00 4.58
2988 3152 0.972134 GGAGATGAGATGGGATGCGA 59.028 55.000 0.00 0.00 0.00 5.10
2989 3153 0.036577 GGGAGATGAGATGGGATGCG 60.037 60.000 0.00 0.00 0.00 4.73
2990 3154 0.036577 CGGGAGATGAGATGGGATGC 60.037 60.000 0.00 0.00 0.00 3.91
2991 3155 0.036577 GCGGGAGATGAGATGGGATG 60.037 60.000 0.00 0.00 0.00 3.51
2992 3156 1.539560 CGCGGGAGATGAGATGGGAT 61.540 60.000 0.00 0.00 0.00 3.85
2993 3157 2.203082 CGCGGGAGATGAGATGGGA 61.203 63.158 0.00 0.00 0.00 4.37
2994 3158 2.341543 CGCGGGAGATGAGATGGG 59.658 66.667 0.00 0.00 0.00 4.00
2995 3159 2.356793 GCGCGGGAGATGAGATGG 60.357 66.667 8.83 0.00 0.00 3.51
3069 3239 0.461516 TCGAGCTCCGTCGTCAGTAT 60.462 55.000 8.47 0.00 40.93 2.12
3079 3249 2.732468 CGCCATGATCGAGCTCCG 60.732 66.667 8.47 3.57 40.25 4.63
3095 3265 1.795162 GCGTCCTGCATTTTCATTCCG 60.795 52.381 0.00 0.00 45.45 4.30
3328 3520 7.768582 TGAAATATGAATTACAGCCGAAGAGAA 59.231 33.333 0.00 0.00 0.00 2.87
3366 3558 5.599999 ACCCAGACACACTCAATAGATAC 57.400 43.478 0.00 0.00 0.00 2.24
3367 3559 6.669631 TCTACCCAGACACACTCAATAGATA 58.330 40.000 0.00 0.00 0.00 1.98
3368 3560 5.519808 TCTACCCAGACACACTCAATAGAT 58.480 41.667 0.00 0.00 0.00 1.98
3369 3561 4.930696 TCTACCCAGACACACTCAATAGA 58.069 43.478 0.00 0.00 0.00 1.98
3380 3572 6.636454 AACCAGATAAATTCTACCCAGACA 57.364 37.500 0.00 0.00 31.77 3.41
3381 3573 7.281100 CAGAAACCAGATAAATTCTACCCAGAC 59.719 40.741 0.00 0.00 31.77 3.51
3382 3574 7.338710 CAGAAACCAGATAAATTCTACCCAGA 58.661 38.462 0.00 0.00 31.77 3.86
3383 3575 6.543831 CCAGAAACCAGATAAATTCTACCCAG 59.456 42.308 0.00 0.00 31.77 4.45
3607 3799 5.355350 GGTAAGATGCAAGCACAGAAATACT 59.645 40.000 0.00 0.00 0.00 2.12
3752 3947 2.711542 CGGTCCAAAGATACAAGGCTT 58.288 47.619 0.00 0.00 0.00 4.35
4117 4423 2.445427 CCATGTGCACCTAAACCATGA 58.555 47.619 15.69 0.00 35.96 3.07
4165 4471 2.711542 ACACTCTATTTTCTTGGGCCG 58.288 47.619 0.00 0.00 0.00 6.13


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.