Multiple sequence alignment - TraesCS5B01G540900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G540900 chr5B 100.000 7148 0 0 1 7148 695784193 695791340 0.000000e+00 13200.0
1 TraesCS5B01G540900 chr5B 97.692 3510 81 0 2840 6349 695482249 695485758 0.000000e+00 6034.0
2 TraesCS5B01G540900 chr5B 96.708 2035 44 11 817 2832 695480240 695482270 0.000000e+00 3365.0
3 TraesCS5B01G540900 chr5B 86.071 2642 351 13 3116 5743 711134023 711131385 0.000000e+00 2824.0
4 TraesCS5B01G540900 chr5B 87.118 2484 319 1 3269 5752 711183828 711181346 0.000000e+00 2813.0
5 TraesCS5B01G540900 chr5B 86.553 2521 318 18 3116 5621 711241024 711238510 0.000000e+00 2758.0
6 TraesCS5B01G540900 chr5B 83.564 2817 433 26 3232 6030 710962997 710960193 0.000000e+00 2610.0
7 TraesCS5B01G540900 chr5B 85.597 1583 169 37 1507 3066 711136909 711135363 0.000000e+00 1605.0
8 TraesCS5B01G540900 chr5B 87.985 1365 147 11 1386 2746 711941158 711942509 0.000000e+00 1596.0
9 TraesCS5B01G540900 chr5B 84.947 1415 170 18 1534 2941 711915202 711913824 0.000000e+00 1393.0
10 TraesCS5B01G540900 chr5B 82.843 612 101 4 5540 6149 643325345 643324736 4.880000e-151 545.0
11 TraesCS5B01G540900 chr5B 80.523 688 120 13 5504 6183 710960431 710959750 3.820000e-142 516.0
12 TraesCS5B01G540900 chr5B 78.540 685 133 11 5504 6182 711946360 711947036 8.510000e-119 438.0
13 TraesCS5B01G540900 chr5B 81.439 528 96 2 5504 6030 643335052 643334526 1.420000e-116 431.0
14 TraesCS5B01G540900 chr5B 82.077 491 88 0 5540 6030 643334872 643334382 3.080000e-113 420.0
15 TraesCS5B01G540900 chr5B 85.714 392 47 5 925 1316 711940747 711941129 8.630000e-109 405.0
16 TraesCS5B01G540900 chr5B 84.136 353 52 1 982 1330 710965373 710965021 8.880000e-89 339.0
17 TraesCS5B01G540900 chr5B 78.929 280 19 19 69 311 695479152 695479428 3.450000e-33 154.0
18 TraesCS5B01G540900 chr5B 96.629 89 3 0 6934 7022 695485757 695485845 1.610000e-31 148.0
19 TraesCS5B01G540900 chr5B 91.919 99 2 2 684 781 695480150 695480243 4.500000e-27 134.0
20 TraesCS5B01G540900 chr5B 95.062 81 4 0 7068 7148 695486319 695486399 2.090000e-25 128.0
21 TraesCS5B01G540900 chr5B 86.066 122 7 4 361 481 695479608 695479720 9.740000e-24 122.0
22 TraesCS5B01G540900 chr5B 88.421 95 10 1 6576 6670 711937021 711937114 5.860000e-21 113.0
23 TraesCS5B01G540900 chr5B 83.908 87 10 4 6344 6430 711147857 711147775 5.940000e-11 80.5
24 TraesCS5B01G540900 chr5D 96.030 3350 128 5 3424 6770 555429230 555425883 0.000000e+00 5445.0
25 TraesCS5B01G540900 chr5D 93.933 2769 98 36 684 3428 555434414 555431692 0.000000e+00 4119.0
26 TraesCS5B01G540900 chr5D 85.714 2905 368 29 3122 6015 560534879 560532011 0.000000e+00 3022.0
27 TraesCS5B01G540900 chr5D 87.947 1286 145 7 1443 2725 561950483 561951761 0.000000e+00 1507.0
28 TraesCS5B01G540900 chr5D 87.462 1316 145 11 1495 2791 560496850 560498164 0.000000e+00 1498.0
29 TraesCS5B01G540900 chr5D 84.925 670 77 13 925 1594 552854685 552854040 0.000000e+00 656.0
30 TraesCS5B01G540900 chr5D 86.282 503 54 8 925 1426 561949858 561950346 3.800000e-147 532.0
31 TraesCS5B01G540900 chr5D 92.166 217 16 1 6807 7022 555425638 555425422 9.010000e-79 305.0
32 TraesCS5B01G540900 chr5D 91.388 209 15 3 157 363 555435199 555434992 4.220000e-72 283.0
33 TraesCS5B01G540900 chr5D 94.643 112 6 0 7037 7148 555424961 555424850 2.650000e-39 174.0
34 TraesCS5B01G540900 chr5D 98.214 56 1 0 7037 7092 555446376 555446321 1.640000e-16 99.0
35 TraesCS5B01G540900 chr5D 87.179 78 9 1 6945 7022 555446930 555446854 3.550000e-13 87.9
36 TraesCS5B01G540900 chr5D 91.228 57 5 0 847 903 561647102 561647046 2.140000e-10 78.7
37 TraesCS5B01G540900 chr7A 86.466 2660 345 11 3236 5886 688997494 688994841 0.000000e+00 2904.0
38 TraesCS5B01G540900 chr7A 84.928 1599 180 35 1519 3099 689000065 688998510 0.000000e+00 1561.0
39 TraesCS5B01G540900 chr7B 86.602 2560 323 18 3192 5740 1322925 1325475 0.000000e+00 2809.0
40 TraesCS5B01G540900 chr7B 82.440 2164 252 67 982 3099 1313192 1315273 0.000000e+00 1773.0
41 TraesCS5B01G540900 chr4A 88.043 1313 140 9 1495 2791 603675434 603676745 0.000000e+00 1539.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G540900 chr5B 695784193 695791340 7147 False 13200.000000 13200 100.000000 1 7148 1 chr5B.!!$F1 7147
1 TraesCS5B01G540900 chr5B 711181346 711183828 2482 True 2813.000000 2813 87.118000 3269 5752 1 chr5B.!!$R3 2483
2 TraesCS5B01G540900 chr5B 711238510 711241024 2514 True 2758.000000 2758 86.553000 3116 5621 1 chr5B.!!$R4 2505
3 TraesCS5B01G540900 chr5B 711131385 711136909 5524 True 2214.500000 2824 85.834000 1507 5743 2 chr5B.!!$R8 4236
4 TraesCS5B01G540900 chr5B 695479152 695486399 7247 False 1440.714286 6034 91.857857 69 7148 7 chr5B.!!$F2 7079
5 TraesCS5B01G540900 chr5B 711913824 711915202 1378 True 1393.000000 1393 84.947000 1534 2941 1 chr5B.!!$R5 1407
6 TraesCS5B01G540900 chr5B 710959750 710965373 5623 True 1155.000000 2610 82.741000 982 6183 3 chr5B.!!$R7 5201
7 TraesCS5B01G540900 chr5B 711937021 711947036 10015 False 638.000000 1596 85.165000 925 6670 4 chr5B.!!$F3 5745
8 TraesCS5B01G540900 chr5B 643324736 643325345 609 True 545.000000 545 82.843000 5540 6149 1 chr5B.!!$R1 609
9 TraesCS5B01G540900 chr5B 643334382 643335052 670 True 425.500000 431 81.758000 5504 6030 2 chr5B.!!$R6 526
10 TraesCS5B01G540900 chr5D 560532011 560534879 2868 True 3022.000000 3022 85.714000 3122 6015 1 chr5D.!!$R2 2893
11 TraesCS5B01G540900 chr5D 555424850 555435199 10349 True 2065.200000 5445 93.632000 157 7148 5 chr5D.!!$R4 6991
12 TraesCS5B01G540900 chr5D 560496850 560498164 1314 False 1498.000000 1498 87.462000 1495 2791 1 chr5D.!!$F1 1296
13 TraesCS5B01G540900 chr5D 561949858 561951761 1903 False 1019.500000 1507 87.114500 925 2725 2 chr5D.!!$F2 1800
14 TraesCS5B01G540900 chr5D 552854040 552854685 645 True 656.000000 656 84.925000 925 1594 1 chr5D.!!$R1 669
15 TraesCS5B01G540900 chr7A 688994841 689000065 5224 True 2232.500000 2904 85.697000 1519 5886 2 chr7A.!!$R1 4367
16 TraesCS5B01G540900 chr7B 1322925 1325475 2550 False 2809.000000 2809 86.602000 3192 5740 1 chr7B.!!$F2 2548
17 TraesCS5B01G540900 chr7B 1313192 1315273 2081 False 1773.000000 1773 82.440000 982 3099 1 chr7B.!!$F1 2117
18 TraesCS5B01G540900 chr4A 603675434 603676745 1311 False 1539.000000 1539 88.043000 1495 2791 1 chr4A.!!$F1 1296

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
174 180 0.035343 TCAGATCTGGTCGACTCGGT 60.035 55.000 22.42 2.58 0.00 4.69 F
331 402 0.038310 AAGGAGGTTGCTTAGGTGCC 59.962 55.000 0.00 0.00 0.00 5.01 F
1461 4534 0.619832 TGCAGCCTTCCTCTCCATCT 60.620 55.000 0.00 0.00 0.00 2.90 F
2660 5767 1.453155 ATTCAAGGCACGATGGTCAC 58.547 50.000 0.00 0.00 0.00 3.67 F
3661 11288 0.898320 ATCTGCTCCAAGTAGCGTGT 59.102 50.000 0.00 0.00 45.85 4.49 F
4026 11653 1.742268 GCTCTTCAAAGGATGCCTGAC 59.258 52.381 0.00 0.00 32.13 3.51 F
5589 13217 1.619654 CCAACCTGACATCTTTGCCA 58.380 50.000 0.00 0.00 0.00 4.92 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1461 4534 0.391528 CATGTCTCATCCACCGCACA 60.392 55.000 0.00 0.0 0.00 4.57 R
2222 5327 3.315191 ACTCGTGAACTGGGACAATTTTG 59.685 43.478 0.00 0.0 38.70 2.44 R
3453 11080 0.735978 CATGTCGGCAGTAACGAGCA 60.736 55.000 0.00 0.0 41.50 4.26 R
4079 11706 1.071699 TGTCAGGTAGTTTGGTGAGCC 59.928 52.381 0.00 0.0 0.00 4.70 R
5377 13005 3.072622 AGGGTAGGAAAGTGTTGAAGTCC 59.927 47.826 0.00 0.0 0.00 3.85 R
5935 14136 1.782752 CCATCCTGGTAATGTCCCCAT 59.217 52.381 0.00 0.0 31.35 4.00 R
6852 15552 0.104120 TTGTGTGCTGCGTACTGAGT 59.896 50.000 7.45 0.0 0.00 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 9.080097 GGTGAAGTACTCTATATGTAGGTGAAT 57.920 37.037 0.00 0.00 0.00 2.57
53 54 8.589701 AGGTGAATTAATACTTGTTTTAGGGG 57.410 34.615 0.00 0.00 0.00 4.79
54 55 7.618117 AGGTGAATTAATACTTGTTTTAGGGGG 59.382 37.037 0.00 0.00 0.00 5.40
55 56 7.616542 GGTGAATTAATACTTGTTTTAGGGGGA 59.383 37.037 0.00 0.00 0.00 4.81
56 57 9.027202 GTGAATTAATACTTGTTTTAGGGGGAA 57.973 33.333 0.00 0.00 0.00 3.97
57 58 9.603189 TGAATTAATACTTGTTTTAGGGGGAAA 57.397 29.630 0.00 0.00 0.00 3.13
113 114 4.529109 TTATTCCCCGCAAAAGAAAAGG 57.471 40.909 0.00 0.00 0.00 3.11
114 115 1.044611 TTCCCCGCAAAAGAAAAGGG 58.955 50.000 0.00 0.00 41.68 3.95
136 142 4.636435 AAACGGGTGGCGGACAGG 62.636 66.667 0.00 0.00 0.00 4.00
144 150 2.997897 GGCGGACAGGGACAGACT 60.998 66.667 0.00 0.00 0.00 3.24
145 151 2.584391 GGCGGACAGGGACAGACTT 61.584 63.158 0.00 0.00 0.00 3.01
146 152 1.374758 GCGGACAGGGACAGACTTG 60.375 63.158 0.00 0.00 0.00 3.16
147 153 1.374758 CGGACAGGGACAGACTTGC 60.375 63.158 0.00 0.00 0.00 4.01
149 155 1.374758 GACAGGGACAGACTTGCGG 60.375 63.158 0.00 0.00 0.00 5.69
150 156 2.743928 CAGGGACAGACTTGCGGC 60.744 66.667 0.00 0.00 0.00 6.53
174 180 0.035343 TCAGATCTGGTCGACTCGGT 60.035 55.000 22.42 2.58 0.00 4.69
181 187 1.748122 GGTCGACTCGGTGCTAGGA 60.748 63.158 16.46 0.00 0.00 2.94
184 190 0.743701 TCGACTCGGTGCTAGGAGAC 60.744 60.000 0.00 0.00 34.40 3.36
263 300 4.021925 GTGAACTGGGCGGCCTCT 62.022 66.667 29.87 13.22 0.00 3.69
306 377 2.046023 CAGCGGAATGGGTGCAGA 60.046 61.111 0.00 0.00 0.00 4.26
308 379 1.452651 AGCGGAATGGGTGCAGATG 60.453 57.895 0.00 0.00 0.00 2.90
310 381 2.827051 CGGAATGGGTGCAGATGCG 61.827 63.158 0.00 0.00 45.83 4.73
311 382 2.484062 GGAATGGGTGCAGATGCGG 61.484 63.158 0.00 0.00 45.83 5.69
313 384 1.001020 AATGGGTGCAGATGCGGAA 60.001 52.632 0.00 0.00 45.83 4.30
314 385 1.033746 AATGGGTGCAGATGCGGAAG 61.034 55.000 0.00 0.00 45.83 3.46
315 386 2.825836 GGGTGCAGATGCGGAAGG 60.826 66.667 0.00 0.00 45.83 3.46
316 387 2.268920 GGTGCAGATGCGGAAGGA 59.731 61.111 0.00 0.00 45.83 3.36
317 388 1.817099 GGTGCAGATGCGGAAGGAG 60.817 63.158 0.00 0.00 45.83 3.69
318 389 1.817099 GTGCAGATGCGGAAGGAGG 60.817 63.158 0.00 0.00 45.83 4.30
320 391 1.078143 GCAGATGCGGAAGGAGGTT 60.078 57.895 0.00 0.00 32.19 3.50
322 393 1.078143 AGATGCGGAAGGAGGTTGC 60.078 57.895 0.00 0.00 32.19 4.17
325 396 0.618458 ATGCGGAAGGAGGTTGCTTA 59.382 50.000 0.00 0.00 32.19 3.09
327 398 0.744771 GCGGAAGGAGGTTGCTTAGG 60.745 60.000 0.00 0.00 0.00 2.69
328 399 0.613777 CGGAAGGAGGTTGCTTAGGT 59.386 55.000 0.00 0.00 0.00 3.08
329 400 1.676014 CGGAAGGAGGTTGCTTAGGTG 60.676 57.143 0.00 0.00 0.00 4.00
330 401 1.454201 GAAGGAGGTTGCTTAGGTGC 58.546 55.000 0.00 0.00 0.00 5.01
331 402 0.038310 AAGGAGGTTGCTTAGGTGCC 59.962 55.000 0.00 0.00 0.00 5.01
332 403 1.378646 GGAGGTTGCTTAGGTGCCC 60.379 63.158 0.00 0.00 0.00 5.36
334 405 2.750237 GGTTGCTTAGGTGCCCCG 60.750 66.667 0.00 0.00 35.12 5.73
335 406 2.750237 GTTGCTTAGGTGCCCCGG 60.750 66.667 0.00 0.00 35.12 5.73
336 407 4.733542 TTGCTTAGGTGCCCCGGC 62.734 66.667 0.00 0.00 42.35 6.13
363 434 2.851798 GCCCTCAGCTTTCACTCTG 58.148 57.895 0.00 0.00 38.99 3.35
365 436 1.544314 GCCCTCAGCTTTCACTCTGTT 60.544 52.381 0.00 0.00 38.99 3.16
378 624 7.095355 GCTTTCACTCTGTTAAATCTTCCGTAA 60.095 37.037 0.00 0.00 0.00 3.18
391 637 1.183549 TCCGTAACTCTTGCCTCTCC 58.816 55.000 0.00 0.00 0.00 3.71
409 655 4.708177 TCTCCTGTTTCTTTCAGTTGGAG 58.292 43.478 0.00 0.00 0.00 3.86
410 656 4.164221 TCTCCTGTTTCTTTCAGTTGGAGT 59.836 41.667 0.00 0.00 0.00 3.85
412 658 4.640201 TCCTGTTTCTTTCAGTTGGAGTTG 59.360 41.667 0.00 0.00 0.00 3.16
420 666 1.610038 TCAGTTGGAGTTGCATTGCAG 59.390 47.619 11.76 0.00 40.61 4.41
463 709 5.893255 TGCAGCAGGAGATTATTAATTGGTT 59.107 36.000 0.00 0.00 0.00 3.67
490 764 7.540055 CCTTTTTAAATGATCTGTTCAGTCAGC 59.460 37.037 0.00 0.00 37.89 4.26
508 782 2.421424 CAGCCTTTAAGCAGTGATGTCC 59.579 50.000 0.00 0.00 34.23 4.02
521 795 4.330074 CAGTGATGTCCTTCGGTGTTTATC 59.670 45.833 0.00 0.00 0.00 1.75
524 798 4.935205 TGATGTCCTTCGGTGTTTATCTTG 59.065 41.667 0.00 0.00 0.00 3.02
549 823 8.301002 TGGTTATTAGTACAAAGATTGGTTTGC 58.699 33.333 0.00 0.00 40.49 3.68
597 871 2.515853 TCAGCTCAGGAGGGAAGAGATA 59.484 50.000 0.00 0.00 0.00 1.98
607 881 6.014669 CAGGAGGGAAGAGATAGAACTATTGG 60.015 46.154 0.00 0.00 0.00 3.16
610 884 6.444704 AGGGAAGAGATAGAACTATTGGTCA 58.555 40.000 0.00 0.00 0.00 4.02
648 922 4.391830 CGGTATTTGCAGACAGCTTTCTAA 59.608 41.667 1.17 0.00 45.94 2.10
658 932 6.697019 GCAGACAGCTTTCTAAAATTTCAACA 59.303 34.615 1.17 0.00 41.15 3.33
660 934 6.920210 AGACAGCTTTCTAAAATTTCAACAGC 59.080 34.615 0.00 0.00 0.00 4.40
677 951 1.443194 GCCTGCTTCATGTTGTGCG 60.443 57.895 0.00 0.00 0.00 5.34
692 966 4.690159 GCGTCGAAAATGATGCCC 57.310 55.556 0.00 0.00 43.54 5.36
753 1229 5.067805 GTGAGTCTTCAACTTTGGTTCCATT 59.932 40.000 0.00 0.00 38.74 3.16
754 1230 6.262273 GTGAGTCTTCAACTTTGGTTCCATTA 59.738 38.462 0.00 0.00 38.74 1.90
755 1231 7.004086 TGAGTCTTCAACTTTGGTTCCATTAT 58.996 34.615 0.00 0.00 38.74 1.28
756 1232 8.160765 TGAGTCTTCAACTTTGGTTCCATTATA 58.839 33.333 0.00 0.00 38.74 0.98
797 1273 4.156739 GGGCAAACTTGAAAGATAGTCAGG 59.843 45.833 0.00 0.00 0.00 3.86
906 1402 3.847042 TCCTTCCCTCTTCAACCTCTA 57.153 47.619 0.00 0.00 0.00 2.43
917 1413 7.453126 CCCTCTTCAACCTCTATATATGTGTCT 59.547 40.741 0.00 0.00 0.00 3.41
1112 3933 2.424733 GGAGGTACAGGGAGGACGC 61.425 68.421 0.00 0.00 0.00 5.19
1150 3971 2.676748 AGATGAAAGATCTCGAGGCCT 58.323 47.619 3.86 3.86 0.00 5.19
1436 4507 8.478066 GCCCATCTTTATCCTTTCTTTTGTAAT 58.522 33.333 0.00 0.00 0.00 1.89
1461 4534 0.619832 TGCAGCCTTCCTCTCCATCT 60.620 55.000 0.00 0.00 0.00 2.90
1723 4804 6.633856 AGAGCAGAAACAATGAAACTTTTGT 58.366 32.000 0.00 0.00 0.00 2.83
2222 5327 2.297033 TGGTTTCCTTGCAAATGAGAGC 59.703 45.455 0.00 6.06 0.00 4.09
2597 5704 1.631405 CCAAGGGCTTTGTCATGGAA 58.369 50.000 8.62 0.00 34.87 3.53
2660 5767 1.453155 ATTCAAGGCACGATGGTCAC 58.547 50.000 0.00 0.00 0.00 3.67
2809 5966 4.682778 ACTTTACAGCTAAGGACACACA 57.317 40.909 0.05 0.00 0.00 3.72
2810 5967 5.031066 ACTTTACAGCTAAGGACACACAA 57.969 39.130 0.05 0.00 0.00 3.33
2811 5968 5.621193 ACTTTACAGCTAAGGACACACAAT 58.379 37.500 0.05 0.00 0.00 2.71
2812 5969 6.062095 ACTTTACAGCTAAGGACACACAATT 58.938 36.000 0.05 0.00 0.00 2.32
2813 5970 7.221450 ACTTTACAGCTAAGGACACACAATTA 58.779 34.615 0.05 0.00 0.00 1.40
2814 5971 7.883311 ACTTTACAGCTAAGGACACACAATTAT 59.117 33.333 0.05 0.00 0.00 1.28
2815 5972 7.609760 TTACAGCTAAGGACACACAATTATG 57.390 36.000 0.00 0.00 0.00 1.90
2816 5973 4.943705 ACAGCTAAGGACACACAATTATGG 59.056 41.667 0.00 0.00 0.00 2.74
2817 5974 5.185454 CAGCTAAGGACACACAATTATGGA 58.815 41.667 0.00 0.00 0.00 3.41
2818 5975 5.824624 CAGCTAAGGACACACAATTATGGAT 59.175 40.000 0.00 0.00 0.00 3.41
2819 5976 6.319658 CAGCTAAGGACACACAATTATGGATT 59.680 38.462 0.00 0.00 0.00 3.01
2820 5977 6.543831 AGCTAAGGACACACAATTATGGATTC 59.456 38.462 0.00 0.00 0.00 2.52
2821 5978 6.543831 GCTAAGGACACACAATTATGGATTCT 59.456 38.462 0.00 0.00 0.00 2.40
2822 5979 7.715249 GCTAAGGACACACAATTATGGATTCTA 59.285 37.037 0.00 0.00 0.00 2.10
2823 5980 7.865706 AAGGACACACAATTATGGATTCTAC 57.134 36.000 0.00 0.00 0.00 2.59
2824 5981 7.200434 AGGACACACAATTATGGATTCTACT 57.800 36.000 0.00 0.00 0.00 2.57
2825 5982 7.275920 AGGACACACAATTATGGATTCTACTC 58.724 38.462 0.00 0.00 0.00 2.59
2826 5983 7.126421 AGGACACACAATTATGGATTCTACTCT 59.874 37.037 0.00 0.00 0.00 3.24
2827 5984 8.421784 GGACACACAATTATGGATTCTACTCTA 58.578 37.037 0.00 0.00 0.00 2.43
2828 5985 9.988815 GACACACAATTATGGATTCTACTCTAT 57.011 33.333 0.00 0.00 0.00 1.98
3133 8277 7.042950 TCAATCCATGGCATAAAGACAATTTG 58.957 34.615 6.96 0.00 39.98 2.32
3220 8372 2.043664 TGGGGGAGATGCAATTTTACCA 59.956 45.455 0.00 0.00 0.00 3.25
3453 11080 3.432046 CCAAAAGCACCACTTGGAACATT 60.432 43.478 1.14 0.00 41.88 2.71
3661 11288 0.898320 ATCTGCTCCAAGTAGCGTGT 59.102 50.000 0.00 0.00 45.85 4.49
3715 11342 7.227512 AGCTAATTAGGTATCTTGATGCAACAC 59.772 37.037 15.41 0.00 31.28 3.32
3738 11365 4.437390 CGCTTGACAATAACATCACTTCCC 60.437 45.833 0.00 0.00 0.00 3.97
3800 11427 4.834496 TCTGTCCAATTCCAAGCTTGAAAT 59.166 37.500 28.05 17.16 0.00 2.17
4026 11653 1.742268 GCTCTTCAAAGGATGCCTGAC 59.258 52.381 0.00 0.00 32.13 3.51
4079 11706 5.296780 TCTTAAACTTGTCAGGTTGCTCAAG 59.703 40.000 0.46 3.93 41.74 3.02
4156 11783 4.226427 TCAAGTTGCCATGAGCTAGAAT 57.774 40.909 0.00 0.00 44.23 2.40
4794 12421 7.564128 TGCGTGATAAATCAAATATTCGAGTC 58.436 34.615 0.00 0.00 38.75 3.36
4953 12580 5.825593 ACATCCCTTTTCTCAGTGAACTA 57.174 39.130 0.00 0.00 33.88 2.24
5083 12710 3.513515 GGAATTCTATGGAGAGAGCGGAT 59.486 47.826 5.23 0.00 31.77 4.18
5377 13005 3.692257 ACTCTCAAGACAAGTGGGATG 57.308 47.619 0.00 0.00 0.00 3.51
5560 13188 6.352516 GGCTCTCTAGAAGAAATTGGAATCA 58.647 40.000 0.00 0.00 32.23 2.57
5589 13217 1.619654 CCAACCTGACATCTTTGCCA 58.380 50.000 0.00 0.00 0.00 4.92
5610 13526 3.817084 CAGAAAGCATGAAGAACCTCACA 59.183 43.478 0.00 0.00 0.00 3.58
5753 13669 3.480470 CTGAAAGCCTGAAGAACCTCAA 58.520 45.455 0.00 0.00 0.00 3.02
5874 13931 2.942376 CTGCCGCAACCTGACATATTTA 59.058 45.455 0.00 0.00 0.00 1.40
6367 14857 4.550422 TGCATTTGCGCTTTTATGTTGTA 58.450 34.783 9.73 0.00 45.83 2.41
6456 14946 6.494893 TGTAGCTAACCATGTCAACATTTC 57.505 37.500 0.00 0.00 33.61 2.17
6547 15037 6.998074 ACTTGGAATGACTGAATACAACTTCA 59.002 34.615 0.00 0.00 34.14 3.02
6553 15043 9.760660 GAATGACTGAATACAACTTCACATTAC 57.239 33.333 0.00 0.00 34.54 1.89
6571 15061 8.370940 TCACATTACTTCTCTTCTCTGTTTCAT 58.629 33.333 0.00 0.00 0.00 2.57
6573 15063 8.370940 ACATTACTTCTCTTCTCTGTTTCATCA 58.629 33.333 0.00 0.00 0.00 3.07
6575 15065 8.594881 TTACTTCTCTTCTCTGTTTCATCAAC 57.405 34.615 0.00 0.00 35.71 3.18
6579 15069 9.434420 CTTCTCTTCTCTGTTTCATCAACTTAT 57.566 33.333 0.00 0.00 36.21 1.73
6607 15097 6.811170 TGAAAGTGTTCCTTTGCTAACAAAAG 59.189 34.615 0.00 0.00 44.90 2.27
6628 15118 0.179000 AATCTCTTCGAGCGGGCAAT 59.821 50.000 0.00 0.00 0.00 3.56
6654 15144 2.512692 TTGTGCCATAACATCCAGCT 57.487 45.000 0.00 0.00 0.00 4.24
6656 15146 1.027357 GTGCCATAACATCCAGCTGG 58.973 55.000 27.87 27.87 0.00 4.85
6664 15154 0.038599 ACATCCAGCTGGCATTCACA 59.961 50.000 28.91 9.41 34.44 3.58
6681 15171 6.183360 GCATTCACATGACTTGGTCAATCATA 60.183 38.462 0.00 0.00 45.96 2.15
6682 15172 6.741992 TTCACATGACTTGGTCAATCATAC 57.258 37.500 0.00 0.00 45.96 2.39
6687 15177 3.000041 GACTTGGTCAATCATACGTGCA 59.000 45.455 0.00 0.00 32.09 4.57
6706 15196 2.675348 GCAGGCTTACATCACTGTTCTC 59.325 50.000 0.00 0.00 36.79 2.87
6707 15197 2.926200 CAGGCTTACATCACTGTTCTCG 59.074 50.000 0.00 0.00 36.79 4.04
6720 15210 4.024556 CACTGTTCTCGACTTGCTGAATTT 60.025 41.667 0.00 0.00 0.00 1.82
6730 15220 4.952460 ACTTGCTGAATTTTGCACAAGAT 58.048 34.783 14.23 0.00 39.05 2.40
6731 15221 4.986659 ACTTGCTGAATTTTGCACAAGATC 59.013 37.500 14.23 5.58 39.05 2.75
6767 15258 2.455557 TGAGGAAGAGAGCTCAAGGAG 58.544 52.381 17.77 0.00 0.00 3.69
6793 15310 2.550277 TGGATGGTGGAAGAGCTCTA 57.450 50.000 18.59 0.00 0.00 2.43
6798 15315 3.685139 TGGTGGAAGAGCTCTAAAGTG 57.315 47.619 18.59 0.00 0.00 3.16
6801 15318 1.066858 TGGAAGAGCTCTAAAGTGCCG 60.067 52.381 18.59 0.00 35.33 5.69
6802 15319 1.204941 GGAAGAGCTCTAAAGTGCCGA 59.795 52.381 18.59 0.00 35.33 5.54
6804 15321 1.257743 AGAGCTCTAAAGTGCCGACA 58.742 50.000 16.50 0.00 35.33 4.35
6825 15525 2.743718 CACTCGGACAGGCCAAGT 59.256 61.111 5.01 2.07 35.94 3.16
6830 15530 2.883828 CGGACAGGCCAAGTGAGGT 61.884 63.158 5.01 0.00 35.94 3.85
6832 15532 0.250513 GGACAGGCCAAGTGAGGTAG 59.749 60.000 5.01 0.00 36.34 3.18
6840 15540 1.670087 CCAAGTGAGGTAGTGTGCTCG 60.670 57.143 0.00 0.00 0.00 5.03
6842 15542 0.598562 AGTGAGGTAGTGTGCTCGTG 59.401 55.000 0.00 0.00 0.00 4.35
6852 15552 0.876399 TGTGCTCGTGCTCGTAACTA 59.124 50.000 11.19 0.00 40.48 2.24
6855 15555 1.129998 TGCTCGTGCTCGTAACTACTC 59.870 52.381 11.19 0.00 40.48 2.59
6856 15556 1.129998 GCTCGTGCTCGTAACTACTCA 59.870 52.381 8.17 0.00 38.33 3.41
6893 15593 6.873076 ACAATTCGAATGCCATTAATTTGTGT 59.127 30.769 12.25 4.49 0.00 3.72
6905 15605 7.116233 GCCATTAATTTGTGTGAACTTCGAATT 59.884 33.333 0.00 0.00 0.00 2.17
6933 15634 6.016610 TGCCTAGTTTTGTATTGACCTTCAAC 60.017 38.462 0.00 0.00 39.45 3.18
7085 16239 0.108138 AGATGGCGAGTAACTGGTGC 60.108 55.000 0.00 0.00 0.00 5.01
7093 16247 0.109342 AGTAACTGGTGCTGCTGCTT 59.891 50.000 17.00 4.80 40.48 3.91
7105 16259 1.461127 CTGCTGCTTTGGAACTCGTAC 59.539 52.381 0.00 0.00 0.00 3.67
7137 16291 2.119391 GGCCATCCCCAAACCACA 59.881 61.111 0.00 0.00 0.00 4.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 8.861086 CACCTACATATAGAGTACTTCACCAAT 58.139 37.037 0.00 0.00 0.00 3.16
8 9 7.580007 TCACCTACATATAGAGTACTTCACCA 58.420 38.462 0.00 0.00 0.00 4.17
27 28 9.689501 CCCCTAAAACAAGTATTAATTCACCTA 57.310 33.333 0.00 0.00 0.00 3.08
29 30 7.616542 TCCCCCTAAAACAAGTATTAATTCACC 59.383 37.037 0.00 0.00 0.00 4.02
30 31 8.584063 TCCCCCTAAAACAAGTATTAATTCAC 57.416 34.615 0.00 0.00 0.00 3.18
31 32 9.603189 TTTCCCCCTAAAACAAGTATTAATTCA 57.397 29.630 0.00 0.00 0.00 2.57
60 61 9.654663 GTGACTCGCCTTTAGGAATATATTTAT 57.345 33.333 0.00 0.00 37.39 1.40
61 62 8.644216 TGTGACTCGCCTTTAGGAATATATTTA 58.356 33.333 0.00 0.00 37.39 1.40
62 63 7.506114 TGTGACTCGCCTTTAGGAATATATTT 58.494 34.615 0.00 0.00 37.39 1.40
63 64 7.062749 TGTGACTCGCCTTTAGGAATATATT 57.937 36.000 0.00 0.00 37.39 1.28
64 65 6.665992 TGTGACTCGCCTTTAGGAATATAT 57.334 37.500 0.00 0.00 37.39 0.86
65 66 6.665992 ATGTGACTCGCCTTTAGGAATATA 57.334 37.500 0.00 0.00 37.39 0.86
99 100 2.900716 TTTCCCCTTTTCTTTTGCGG 57.099 45.000 0.00 0.00 0.00 5.69
130 136 1.374758 CGCAAGTCTGTCCCTGTCC 60.375 63.158 0.00 0.00 0.00 4.02
144 150 4.838152 GATCTGAGGCCGCCGCAA 62.838 66.667 17.16 8.61 32.01 4.85
147 153 4.598894 CCAGATCTGAGGCCGCCG 62.599 72.222 24.62 0.00 0.00 6.46
149 155 2.107953 GACCAGATCTGAGGCCGC 59.892 66.667 24.62 0.00 0.00 6.53
150 156 2.121538 TCGACCAGATCTGAGGCCG 61.122 63.158 24.62 18.77 0.00 6.13
174 180 2.707849 GCCGGTTCGTCTCCTAGCA 61.708 63.158 1.90 0.00 0.00 3.49
199 205 2.037620 CTGCTTAGCCCATCTCCGCT 62.038 60.000 0.29 0.00 39.17 5.52
205 211 1.127343 ACCTCTCTGCTTAGCCCATC 58.873 55.000 0.29 0.00 0.00 3.51
206 212 0.835941 CACCTCTCTGCTTAGCCCAT 59.164 55.000 0.29 0.00 0.00 4.00
263 300 1.802337 CGAGTCGACAACCCAGTCCA 61.802 60.000 19.50 0.00 35.07 4.02
305 376 0.678048 AAGCAACCTCCTTCCGCATC 60.678 55.000 0.00 0.00 0.00 3.91
306 377 0.618458 TAAGCAACCTCCTTCCGCAT 59.382 50.000 0.00 0.00 0.00 4.73
308 379 0.744771 CCTAAGCAACCTCCTTCCGC 60.745 60.000 0.00 0.00 0.00 5.54
310 381 1.950954 GCACCTAAGCAACCTCCTTCC 60.951 57.143 0.00 0.00 0.00 3.46
311 382 1.454201 GCACCTAAGCAACCTCCTTC 58.546 55.000 0.00 0.00 0.00 3.46
313 384 1.685820 GGCACCTAAGCAACCTCCT 59.314 57.895 0.00 0.00 35.83 3.69
314 385 4.320910 GGCACCTAAGCAACCTCC 57.679 61.111 0.00 0.00 35.83 4.30
345 416 0.036022 ACAGAGTGAAAGCTGAGGGC 59.964 55.000 0.00 0.00 42.19 5.19
346 417 2.557920 AACAGAGTGAAAGCTGAGGG 57.442 50.000 0.00 0.00 36.07 4.30
349 420 6.428159 GGAAGATTTAACAGAGTGAAAGCTGA 59.572 38.462 0.00 0.00 33.52 4.26
358 429 7.229581 AGAGTTACGGAAGATTTAACAGAGT 57.770 36.000 0.00 0.00 0.00 3.24
363 434 5.642491 AGGCAAGAGTTACGGAAGATTTAAC 59.358 40.000 0.00 0.00 0.00 2.01
365 436 5.187186 AGAGGCAAGAGTTACGGAAGATTTA 59.813 40.000 0.00 0.00 0.00 1.40
378 624 2.334023 AGAAACAGGAGAGGCAAGAGT 58.666 47.619 0.00 0.00 0.00 3.24
391 637 4.142403 TGCAACTCCAACTGAAAGAAACAG 60.142 41.667 0.00 0.00 40.68 3.16
409 655 2.437200 TTTGTAGCCTGCAATGCAAC 57.563 45.000 9.92 5.02 38.41 4.17
410 656 3.681593 ATTTTGTAGCCTGCAATGCAA 57.318 38.095 9.92 2.23 38.41 4.08
412 658 3.587923 TGAATTTTGTAGCCTGCAATGC 58.412 40.909 0.00 0.00 0.00 3.56
420 666 3.193267 TGCAGGTGATGAATTTTGTAGCC 59.807 43.478 0.00 0.00 0.00 3.93
457 703 9.710900 GAACAGATCATTTAAAAAGGAACCAAT 57.289 29.630 0.00 0.00 32.03 3.16
458 704 8.700051 TGAACAGATCATTTAAAAAGGAACCAA 58.300 29.630 0.00 0.00 32.03 3.67
463 709 8.690203 TGACTGAACAGATCATTTAAAAAGGA 57.310 30.769 8.87 0.00 37.44 3.36
474 720 3.777106 AAAGGCTGACTGAACAGATCA 57.223 42.857 8.87 7.61 39.94 2.92
490 764 3.372206 CGAAGGACATCACTGCTTAAAGG 59.628 47.826 0.00 0.00 0.00 3.11
508 782 8.488651 ACTAATAACCAAGATAAACACCGAAG 57.511 34.615 0.00 0.00 0.00 3.79
524 798 8.520351 AGCAAACCAATCTTTGTACTAATAACC 58.480 33.333 0.00 0.00 34.19 2.85
555 829 9.289782 AGCTGAAAGACTGAAACTGTAATAATT 57.710 29.630 0.00 0.00 34.07 1.40
572 846 1.905215 CTTCCCTCCTGAGCTGAAAGA 59.095 52.381 0.00 0.00 34.07 2.52
597 871 5.587844 GCAGAATGTGATGACCAATAGTTCT 59.412 40.000 0.00 0.00 39.31 3.01
610 884 0.541392 TACCGGCAGCAGAATGTGAT 59.459 50.000 0.00 0.00 39.31 3.06
638 912 6.145048 CAGGCTGTTGAAATTTTAGAAAGCTG 59.855 38.462 6.28 0.00 0.00 4.24
648 922 4.202284 ACATGAAGCAGGCTGTTGAAATTT 60.202 37.500 17.16 0.00 0.00 1.82
658 932 1.859427 CGCACAACATGAAGCAGGCT 61.859 55.000 0.00 0.00 0.00 4.58
660 934 0.110056 GACGCACAACATGAAGCAGG 60.110 55.000 0.00 0.00 0.00 4.85
677 951 2.872858 GGACTAGGGCATCATTTTCGAC 59.127 50.000 0.00 0.00 0.00 4.20
690 964 4.630644 AGCATAACATCATGGACTAGGG 57.369 45.455 0.00 0.00 0.00 3.53
692 966 7.558161 TCAAAAGCATAACATCATGGACTAG 57.442 36.000 0.00 0.00 0.00 2.57
753 1229 4.449081 CCCCCATGGAGAAAAGCCAATATA 60.449 45.833 15.22 0.00 39.21 0.86
754 1230 3.580039 CCCCATGGAGAAAAGCCAATAT 58.420 45.455 15.22 0.00 39.21 1.28
755 1231 2.359143 CCCCCATGGAGAAAAGCCAATA 60.359 50.000 15.22 0.00 39.21 1.90
756 1232 1.623279 CCCCCATGGAGAAAAGCCAAT 60.623 52.381 15.22 0.00 39.21 3.16
797 1273 1.235281 GGAAAGGAGGTGGCGTGTTC 61.235 60.000 0.00 0.00 0.00 3.18
906 1402 5.365025 AGAGTGCTGACCAAGACACATATAT 59.635 40.000 0.00 0.00 36.18 0.86
1112 3933 3.577649 TCTTCTCCTGCAAGTCTAACG 57.422 47.619 0.00 0.00 0.00 3.18
1369 4190 6.254157 CACACAAAGACATTTTCTCCAAACAG 59.746 38.462 0.00 0.00 31.02 3.16
1436 4507 2.356125 GGAGAGGAAGGCTGCACATTAA 60.356 50.000 0.50 0.00 0.00 1.40
1461 4534 0.391528 CATGTCTCATCCACCGCACA 60.392 55.000 0.00 0.00 0.00 4.57
1505 4581 5.046376 TCAACTTCAGTCTCCAAGCATATCA 60.046 40.000 0.00 0.00 0.00 2.15
2066 5171 5.218959 TCCCAGAGATCATCCAGAACAATA 58.781 41.667 0.00 0.00 0.00 1.90
2222 5327 3.315191 ACTCGTGAACTGGGACAATTTTG 59.685 43.478 0.00 0.00 38.70 2.44
2597 5704 5.508489 CCATTGCTGGATTAAGCGATTGATT 60.508 40.000 0.00 0.00 43.48 2.57
2660 5767 3.379372 CCAGAAGGTAATTGATGCACCTG 59.621 47.826 0.00 0.00 41.90 4.00
2794 5947 5.185454 TCCATAATTGTGTGTCCTTAGCTG 58.815 41.667 0.00 0.00 0.00 4.24
3220 8372 9.315363 TGGAGTTAAGAGAAGAAACTAAGATCT 57.685 33.333 0.00 0.00 33.72 2.75
3453 11080 0.735978 CATGTCGGCAGTAACGAGCA 60.736 55.000 0.00 0.00 41.50 4.26
3661 11288 8.415553 CAATTGATTAATGGAAGATGGTAGCAA 58.584 33.333 0.00 0.00 0.00 3.91
3715 11342 4.437390 GGGAAGTGATGTTATTGTCAAGCG 60.437 45.833 0.00 0.00 0.00 4.68
3738 11365 8.129161 TGTTTTGAAGTGCATGAAAATACTTG 57.871 30.769 0.00 0.00 33.83 3.16
3800 11427 2.229792 GACAAACATGGTCAGGCAAGA 58.770 47.619 0.00 0.00 35.36 3.02
4026 11653 6.434340 AGAGTTTAGGAAGGCTACCAAATTTG 59.566 38.462 11.40 11.40 0.00 2.32
4079 11706 1.071699 TGTCAGGTAGTTTGGTGAGCC 59.928 52.381 0.00 0.00 0.00 4.70
4156 11783 2.760092 GGCTGAAATCAATTGGCAGGTA 59.240 45.455 5.42 0.00 0.00 3.08
4277 11904 3.531538 TCGAGGTTATGGCAATCTGAAC 58.468 45.455 0.00 0.00 0.00 3.18
4760 12387 5.940192 TGATTTATCACGCAGTTTGACTT 57.060 34.783 0.00 0.00 41.61 3.01
4953 12580 3.565307 TGCTTCCAAACCATTCAGAGTT 58.435 40.909 0.00 0.00 0.00 3.01
5028 12655 7.831691 TTTTCTAATGTTGGGAATGTTCAGA 57.168 32.000 0.00 0.00 0.00 3.27
5083 12710 8.123639 AGCAGTACTCTTAGTTTCATACAAGA 57.876 34.615 0.00 0.00 0.00 3.02
5377 13005 3.072622 AGGGTAGGAAAGTGTTGAAGTCC 59.927 47.826 0.00 0.00 0.00 3.85
5589 13217 4.070716 CTGTGAGGTTCTTCATGCTTTCT 58.929 43.478 0.00 0.00 0.00 2.52
5610 13526 9.660180 CCTATCAACTTTAGTTTTCTAAGAGCT 57.340 33.333 0.00 0.00 42.40 4.09
5753 13669 4.748102 TCAACGTCAATTTTCTAAGAGCGT 59.252 37.500 0.00 0.00 0.00 5.07
5850 13766 2.031163 GTCAGGTTGCGGCAGTCT 59.969 61.111 1.67 1.90 0.00 3.24
5874 13931 3.181440 TGAGGTTCTTCATGCTTTCAGGT 60.181 43.478 0.00 0.00 0.00 4.00
5935 14136 1.782752 CCATCCTGGTAATGTCCCCAT 59.217 52.381 0.00 0.00 31.35 4.00
6162 14651 1.085091 GCTCTGCATGAGACCAACAG 58.915 55.000 14.86 0.00 45.39 3.16
6222 14711 0.107017 ACCACCAGGAGCACATATGC 60.107 55.000 1.58 0.00 45.27 3.14
6226 14715 1.064003 TGTAACCACCAGGAGCACAT 58.936 50.000 0.00 0.00 38.69 3.21
6367 14857 9.474313 TCTGCCCTTGAAAAACTGTATATAAAT 57.526 29.630 0.00 0.00 0.00 1.40
6432 14922 6.348132 CGAAATGTTGACATGGTTAGCTACAA 60.348 38.462 0.00 0.00 36.56 2.41
6444 14934 7.306749 GCAAGTTCAATTTCGAAATGTTGACAT 60.307 33.333 23.38 12.60 38.41 3.06
6456 14946 6.752335 TTCTTCAATGCAAGTTCAATTTCG 57.248 33.333 0.00 0.00 0.00 3.46
6527 15017 9.760660 GTAATGTGAAGTTGTATTCAGTCATTC 57.239 33.333 7.94 0.00 39.78 2.67
6547 15037 8.370940 TGATGAAACAGAGAAGAGAAGTAATGT 58.629 33.333 0.00 0.00 0.00 2.71
6553 15043 7.727331 AAGTTGATGAAACAGAGAAGAGAAG 57.273 36.000 0.00 0.00 41.61 2.85
6571 15061 8.405531 CAAAGGAACACTTTCAAGATAAGTTGA 58.594 33.333 0.00 0.00 46.20 3.18
6573 15063 7.068716 AGCAAAGGAACACTTTCAAGATAAGTT 59.931 33.333 0.00 0.00 46.20 2.66
6575 15065 6.974965 AGCAAAGGAACACTTTCAAGATAAG 58.025 36.000 0.00 0.00 46.20 1.73
6579 15069 5.650266 TGTTAGCAAAGGAACACTTTCAAGA 59.350 36.000 0.00 0.00 46.20 3.02
6654 15144 2.161855 GACCAAGTCATGTGAATGCCA 58.838 47.619 0.00 0.00 32.09 4.92
6656 15146 3.921119 TTGACCAAGTCATGTGAATGC 57.079 42.857 0.00 0.00 42.40 3.56
6664 15154 3.623060 GCACGTATGATTGACCAAGTCAT 59.377 43.478 0.00 10.30 42.40 3.06
6681 15171 0.321671 AGTGATGTAAGCCTGCACGT 59.678 50.000 0.00 0.00 34.82 4.49
6682 15172 0.723414 CAGTGATGTAAGCCTGCACG 59.277 55.000 0.00 0.00 34.82 5.34
6687 15177 2.826128 TCGAGAACAGTGATGTAAGCCT 59.174 45.455 0.00 0.00 0.00 4.58
6706 15196 2.730069 TGTGCAAAATTCAGCAAGTCG 58.270 42.857 6.36 0.00 43.20 4.18
6707 15197 4.362279 TCTTGTGCAAAATTCAGCAAGTC 58.638 39.130 6.36 0.00 43.20 3.01
6720 15210 8.883954 TTTATTGTGAAATTGATCTTGTGCAA 57.116 26.923 0.00 0.00 0.00 4.08
6767 15258 3.005155 GCTCTTCCACCATCCAAATATGC 59.995 47.826 0.00 0.00 0.00 3.14
6768 15259 4.467769 AGCTCTTCCACCATCCAAATATG 58.532 43.478 0.00 0.00 0.00 1.78
6775 15292 3.198853 ACTTTAGAGCTCTTCCACCATCC 59.801 47.826 23.84 0.00 0.00 3.51
6776 15293 4.187694 CACTTTAGAGCTCTTCCACCATC 58.812 47.826 23.84 0.00 0.00 3.51
6825 15525 1.179174 AGCACGAGCACACTACCTCA 61.179 55.000 7.77 0.00 45.49 3.86
6830 15530 0.876399 TTACGAGCACGAGCACACTA 59.124 50.000 11.40 0.00 45.49 2.74
6832 15532 0.663568 AGTTACGAGCACGAGCACAC 60.664 55.000 11.40 0.00 45.49 3.82
6840 15540 3.668100 CGTACTGAGTAGTTACGAGCAC 58.332 50.000 0.00 0.00 38.36 4.40
6842 15542 2.094894 TGCGTACTGAGTAGTTACGAGC 59.905 50.000 9.56 0.92 38.36 5.03
6852 15552 0.104120 TTGTGTGCTGCGTACTGAGT 59.896 50.000 7.45 0.00 0.00 3.41
6855 15555 1.462378 CGAATTGTGTGCTGCGTACTG 60.462 52.381 7.45 0.00 0.00 2.74
6856 15556 0.790207 CGAATTGTGTGCTGCGTACT 59.210 50.000 7.45 0.00 0.00 2.73
6893 15593 4.894784 ACTAGGCAGAAATTCGAAGTTCA 58.105 39.130 32.37 15.67 35.60 3.18
6905 15605 5.876357 AGGTCAATACAAAACTAGGCAGAA 58.124 37.500 0.00 0.00 0.00 3.02
6933 15634 9.504710 TGAATTTGACAAGCATTTGAATTTTTG 57.495 25.926 0.00 0.00 37.73 2.44
7085 16239 1.461127 GTACGAGTTCCAAAGCAGCAG 59.539 52.381 0.00 0.00 0.00 4.24
7093 16247 4.617959 CAGTTCAGAAGTACGAGTTCCAA 58.382 43.478 0.00 0.00 0.00 3.53
7105 16259 2.383527 GGCCGTCGCAGTTCAGAAG 61.384 63.158 0.00 0.00 36.38 2.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.