Multiple sequence alignment - TraesCS5B01G540100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G540100 chr5B 100.000 3397 0 0 1 3397 695585895 695582499 0.000000e+00 6274.0
1 TraesCS5B01G540100 chr5B 97.516 1127 26 1 1707 2833 23838832 23839956 0.000000e+00 1925.0
2 TraesCS5B01G540100 chr5B 97.345 1130 28 2 1704 2833 462702088 462703215 0.000000e+00 1919.0
3 TraesCS5B01G540100 chr5B 97.433 1052 26 1 662 1712 23838043 23839094 0.000000e+00 1792.0
4 TraesCS5B01G540100 chr5B 95.947 1061 31 6 662 1712 432685044 432686102 0.000000e+00 1711.0
5 TraesCS5B01G540100 chr5B 95.285 509 17 5 4 506 239886680 239886173 0.000000e+00 800.0
6 TraesCS5B01G540100 chr5B 95.188 478 15 6 159 630 23837509 23837984 0.000000e+00 749.0
7 TraesCS5B01G540100 chr5B 96.135 207 8 0 424 630 279429055 279429261 4.200000e-89 339.0
8 TraesCS5B01G540100 chr5B 100.000 52 0 0 627 678 279429365 279429416 2.790000e-16 97.1
9 TraesCS5B01G540100 chr2B 95.142 1688 48 15 1710 3397 514848949 514847296 0.000000e+00 2632.0
10 TraesCS5B01G540100 chr2B 94.406 1716 74 10 4 1712 762182471 762180771 0.000000e+00 2617.0
11 TraesCS5B01G540100 chr2B 97.870 1127 23 1 1707 2833 178724305 178725430 0.000000e+00 1947.0
12 TraesCS5B01G540100 chr2B 97.516 1127 27 1 1707 2833 573902201 573903326 0.000000e+00 1925.0
13 TraesCS5B01G540100 chr2B 96.391 1053 36 1 662 1712 178723516 178724568 0.000000e+00 1733.0
14 TraesCS5B01G540100 chr2B 97.534 730 18 0 662 1391 87173459 87172730 0.000000e+00 1249.0
15 TraesCS5B01G540100 chr2B 95.103 633 20 4 4 630 64308888 64308261 0.000000e+00 987.0
16 TraesCS5B01G540100 chr2B 94.476 525 22 4 112 630 573900608 573901131 0.000000e+00 802.0
17 TraesCS5B01G540100 chr2B 98.756 402 5 0 4 405 700114992 700114591 0.000000e+00 715.0
18 TraesCS5B01G540100 chr2B 98.160 326 4 1 1389 1712 573902139 573902464 4.920000e-158 568.0
19 TraesCS5B01G540100 chr2B 100.000 52 0 0 627 678 762181766 762181715 2.790000e-16 97.1
20 TraesCS5B01G540100 chr2B 100.000 51 0 0 628 678 639769776 639769726 1.000000e-15 95.3
21 TraesCS5B01G540100 chr2B 100.000 51 0 0 628 678 769631809 769631859 1.000000e-15 95.3
22 TraesCS5B01G540100 chr6B 94.550 1688 58 16 1710 3397 600465537 600463884 0.000000e+00 2577.0
23 TraesCS5B01G540100 chr6B 94.263 1534 55 15 1707 3240 116566314 116567814 0.000000e+00 2314.0
24 TraesCS5B01G540100 chr6B 97.959 1127 21 1 1707 2833 704576436 704577560 0.000000e+00 1953.0
25 TraesCS5B01G540100 chr6B 97.699 1130 24 2 1704 2833 683851163 683852290 0.000000e+00 1941.0
26 TraesCS5B01G540100 chr6B 97.531 1053 24 1 662 1712 10842134 10843186 0.000000e+00 1799.0
27 TraesCS5B01G540100 chr6B 97.397 730 19 0 662 1391 30588770 30589499 0.000000e+00 1243.0
28 TraesCS5B01G540100 chr6B 94.787 633 26 3 4 630 158274434 158273803 0.000000e+00 979.0
29 TraesCS5B01G540100 chr6B 98.444 514 7 1 1200 1712 704576185 704576698 0.000000e+00 904.0
30 TraesCS5B01G540100 chr6B 97.512 402 10 0 4 405 546267322 546266921 0.000000e+00 688.0
31 TraesCS5B01G540100 chr6B 98.182 55 1 0 624 678 254731444 254731498 2.790000e-16 97.1
32 TraesCS5B01G540100 chr7B 94.441 1691 62 15 1707 3397 14328555 14330213 0.000000e+00 2573.0
33 TraesCS5B01G540100 chr7B 94.441 1691 61 15 1707 3397 14312606 14314263 0.000000e+00 2571.0
34 TraesCS5B01G540100 chr7B 95.103 633 24 3 4 630 179707455 179706824 0.000000e+00 990.0
35 TraesCS5B01G540100 chr7B 96.135 207 8 0 424 630 415646128 415645922 4.200000e-89 339.0
36 TraesCS5B01G540100 chr1B 93.850 1691 49 17 1707 3397 653202063 653203698 0.000000e+00 2495.0
37 TraesCS5B01G540100 chr1B 97.598 1124 24 2 1710 2833 593168887 593167767 0.000000e+00 1923.0
38 TraesCS5B01G540100 chr1B 98.594 711 10 0 2687 3397 392639779 392640489 0.000000e+00 1258.0
39 TraesCS5B01G540100 chr1B 94.688 640 23 4 1 630 577541787 577542425 0.000000e+00 983.0
40 TraesCS5B01G540100 chr1B 94.654 636 23 4 1 630 526003619 526004249 0.000000e+00 976.0
41 TraesCS5B01G540100 chr1B 100.000 51 0 0 628 678 634847801 634847751 1.000000e-15 95.3
42 TraesCS5B01G540100 chr4A 93.199 1691 60 17 1707 3397 660002061 660003696 0.000000e+00 2435.0
43 TraesCS5B01G540100 chr4A 97.853 326 5 1 1389 1712 660057427 660057752 2.290000e-156 562.0
44 TraesCS5B01G540100 chr4A 100.000 51 0 0 628 678 723904960 723905010 1.000000e-15 95.3
45 TraesCS5B01G540100 chr3B 97.689 1125 23 1 1707 2831 18315779 18316900 0.000000e+00 1930.0
46 TraesCS5B01G540100 chr3B 97.241 1051 29 0 662 1712 18314990 18316040 0.000000e+00 1781.0
47 TraesCS5B01G540100 chr3B 97.671 730 17 0 662 1391 306836394 306835665 0.000000e+00 1254.0
48 TraesCS5B01G540100 chr3B 93.519 648 23 6 1 630 18314285 18314931 0.000000e+00 946.0
49 TraesCS5B01G540100 chr4B 97.598 1124 24 2 1710 2833 554164324 554163204 0.000000e+00 1923.0
50 TraesCS5B01G540100 chr4B 96.858 541 17 0 2857 3397 6422066 6422606 0.000000e+00 905.0
51 TraesCS5B01G540100 chr4B 97.846 325 5 2 1389 1712 661862937 661863260 8.230000e-156 560.0
52 TraesCS5B01G540100 chrUn 96.135 207 8 0 424 630 77147193 77147399 4.200000e-89 339.0
53 TraesCS5B01G540100 chrUn 98.077 52 1 0 627 678 35194957 35194906 1.300000e-14 91.6
54 TraesCS5B01G540100 chrUn 96.364 55 2 0 624 678 236922362 236922416 1.300000e-14 91.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G540100 chr5B 695582499 695585895 3396 True 6274.000000 6274 100.000000 1 3397 1 chr5B.!!$R2 3396
1 TraesCS5B01G540100 chr5B 462702088 462703215 1127 False 1919.000000 1919 97.345000 1704 2833 1 chr5B.!!$F2 1129
2 TraesCS5B01G540100 chr5B 432685044 432686102 1058 False 1711.000000 1711 95.947000 662 1712 1 chr5B.!!$F1 1050
3 TraesCS5B01G540100 chr5B 23837509 23839956 2447 False 1488.666667 1925 96.712333 159 2833 3 chr5B.!!$F3 2674
4 TraesCS5B01G540100 chr5B 239886173 239886680 507 True 800.000000 800 95.285000 4 506 1 chr5B.!!$R1 502
5 TraesCS5B01G540100 chr2B 514847296 514848949 1653 True 2632.000000 2632 95.142000 1710 3397 1 chr2B.!!$R3 1687
6 TraesCS5B01G540100 chr2B 178723516 178725430 1914 False 1840.000000 1947 97.130500 662 2833 2 chr2B.!!$F2 2171
7 TraesCS5B01G540100 chr2B 762180771 762182471 1700 True 1357.050000 2617 97.203000 4 1712 2 chr2B.!!$R6 1708
8 TraesCS5B01G540100 chr2B 87172730 87173459 729 True 1249.000000 1249 97.534000 662 1391 1 chr2B.!!$R2 729
9 TraesCS5B01G540100 chr2B 573900608 573903326 2718 False 1098.333333 1925 96.717333 112 2833 3 chr2B.!!$F3 2721
10 TraesCS5B01G540100 chr2B 64308261 64308888 627 True 987.000000 987 95.103000 4 630 1 chr2B.!!$R1 626
11 TraesCS5B01G540100 chr6B 600463884 600465537 1653 True 2577.000000 2577 94.550000 1710 3397 1 chr6B.!!$R3 1687
12 TraesCS5B01G540100 chr6B 116566314 116567814 1500 False 2314.000000 2314 94.263000 1707 3240 1 chr6B.!!$F3 1533
13 TraesCS5B01G540100 chr6B 683851163 683852290 1127 False 1941.000000 1941 97.699000 1704 2833 1 chr6B.!!$F5 1129
14 TraesCS5B01G540100 chr6B 10842134 10843186 1052 False 1799.000000 1799 97.531000 662 1712 1 chr6B.!!$F1 1050
15 TraesCS5B01G540100 chr6B 704576185 704577560 1375 False 1428.500000 1953 98.201500 1200 2833 2 chr6B.!!$F6 1633
16 TraesCS5B01G540100 chr6B 30588770 30589499 729 False 1243.000000 1243 97.397000 662 1391 1 chr6B.!!$F2 729
17 TraesCS5B01G540100 chr6B 158273803 158274434 631 True 979.000000 979 94.787000 4 630 1 chr6B.!!$R1 626
18 TraesCS5B01G540100 chr7B 14328555 14330213 1658 False 2573.000000 2573 94.441000 1707 3397 1 chr7B.!!$F2 1690
19 TraesCS5B01G540100 chr7B 14312606 14314263 1657 False 2571.000000 2571 94.441000 1707 3397 1 chr7B.!!$F1 1690
20 TraesCS5B01G540100 chr7B 179706824 179707455 631 True 990.000000 990 95.103000 4 630 1 chr7B.!!$R1 626
21 TraesCS5B01G540100 chr1B 653202063 653203698 1635 False 2495.000000 2495 93.850000 1707 3397 1 chr1B.!!$F4 1690
22 TraesCS5B01G540100 chr1B 593167767 593168887 1120 True 1923.000000 1923 97.598000 1710 2833 1 chr1B.!!$R1 1123
23 TraesCS5B01G540100 chr1B 392639779 392640489 710 False 1258.000000 1258 98.594000 2687 3397 1 chr1B.!!$F1 710
24 TraesCS5B01G540100 chr1B 577541787 577542425 638 False 983.000000 983 94.688000 1 630 1 chr1B.!!$F3 629
25 TraesCS5B01G540100 chr1B 526003619 526004249 630 False 976.000000 976 94.654000 1 630 1 chr1B.!!$F2 629
26 TraesCS5B01G540100 chr4A 660002061 660003696 1635 False 2435.000000 2435 93.199000 1707 3397 1 chr4A.!!$F1 1690
27 TraesCS5B01G540100 chr3B 18314285 18316900 2615 False 1552.333333 1930 96.149667 1 2831 3 chr3B.!!$F1 2830
28 TraesCS5B01G540100 chr3B 306835665 306836394 729 True 1254.000000 1254 97.671000 662 1391 1 chr3B.!!$R1 729
29 TraesCS5B01G540100 chr4B 554163204 554164324 1120 True 1923.000000 1923 97.598000 1710 2833 1 chr4B.!!$R1 1123
30 TraesCS5B01G540100 chr4B 6422066 6422606 540 False 905.000000 905 96.858000 2857 3397 1 chr4B.!!$F1 540

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
801 858 0.179012 GGGGTTTTCTTCCCACGTCA 60.179 55.0 3.37 0.00 46.26 4.35 F
1358 1415 0.386476 GTATACCACATCACCGCGGA 59.614 55.0 35.90 11.57 0.00 5.54 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2027 2321 1.000396 ACCTCCAATGCAGAAGCCC 60.000 57.895 0.0 0.0 41.13 5.19 R
3243 3537 4.141620 TGAGACTGACTTGGCTCTTTCTTT 60.142 41.667 0.0 0.0 0.00 2.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
64 65 6.389906 CCAGCCAGGAAATAAACTTTACTTG 58.610 40.000 0.00 0.00 41.22 3.16
405 430 6.378582 TGCTTTCAGTTTCAAATAATCCGAC 58.621 36.000 0.00 0.00 0.00 4.79
407 432 6.569610 GCTTTCAGTTTCAAATAATCCGACCA 60.570 38.462 0.00 0.00 0.00 4.02
408 433 7.461182 TTTCAGTTTCAAATAATCCGACCAT 57.539 32.000 0.00 0.00 0.00 3.55
409 434 6.435430 TCAGTTTCAAATAATCCGACCATG 57.565 37.500 0.00 0.00 0.00 3.66
411 436 4.644685 AGTTTCAAATAATCCGACCATGGG 59.355 41.667 18.09 0.00 0.00 4.00
412 437 4.511786 TTCAAATAATCCGACCATGGGA 57.488 40.909 18.09 3.91 38.10 4.37
414 439 4.397420 TCAAATAATCCGACCATGGGATG 58.603 43.478 18.09 4.86 43.43 3.51
422 447 3.513225 CCATGGGATGGCACGAAC 58.487 61.111 2.85 0.00 44.70 3.95
481 511 0.866061 CGAACTAGACGGTCATGGCG 60.866 60.000 11.27 7.10 0.00 5.69
558 588 4.282703 AGTGGCCTAGTTTCTCGTTTTCTA 59.717 41.667 3.32 0.00 0.00 2.10
579 609 5.977725 TCTATTAGCTGTGTAATCGCTGAAC 59.022 40.000 0.00 0.00 35.33 3.18
630 660 2.599848 CGAAGTTGAACGCAGGACAAAG 60.600 50.000 0.00 0.00 0.00 2.77
631 661 1.308998 AGTTGAACGCAGGACAAAGG 58.691 50.000 0.00 0.00 0.00 3.11
632 662 0.310854 GTTGAACGCAGGACAAAGGG 59.689 55.000 0.00 0.00 0.00 3.95
633 663 1.452145 TTGAACGCAGGACAAAGGGC 61.452 55.000 0.00 0.00 0.00 5.19
634 664 1.896660 GAACGCAGGACAAAGGGCA 60.897 57.895 0.00 0.00 0.00 5.36
635 665 1.856265 GAACGCAGGACAAAGGGCAG 61.856 60.000 0.00 0.00 0.00 4.85
636 666 3.058160 CGCAGGACAAAGGGCAGG 61.058 66.667 0.00 0.00 0.00 4.85
637 667 2.436109 GCAGGACAAAGGGCAGGA 59.564 61.111 0.00 0.00 0.00 3.86
638 668 1.973812 GCAGGACAAAGGGCAGGAC 60.974 63.158 0.00 0.00 0.00 3.85
642 672 1.147817 AGGACAAAGGGCAGGACATTT 59.852 47.619 0.00 0.00 0.00 2.32
643 673 1.273327 GGACAAAGGGCAGGACATTTG 59.727 52.381 10.44 10.44 38.35 2.32
645 675 2.229784 GACAAAGGGCAGGACATTTGAG 59.770 50.000 18.06 0.00 36.41 3.02
649 679 2.962859 AGGGCAGGACATTTGAGTTTT 58.037 42.857 0.00 0.00 0.00 2.43
651 681 2.351738 GGGCAGGACATTTGAGTTTTCG 60.352 50.000 0.00 0.00 0.00 3.46
653 683 3.365364 GGCAGGACATTTGAGTTTTCGAG 60.365 47.826 0.00 0.00 0.00 4.04
655 685 2.814336 AGGACATTTGAGTTTTCGAGGC 59.186 45.455 0.00 0.00 0.00 4.70
656 686 2.552315 GGACATTTGAGTTTTCGAGGCA 59.448 45.455 0.00 0.00 0.00 4.75
657 687 3.004315 GGACATTTGAGTTTTCGAGGCAA 59.996 43.478 0.00 0.00 0.00 4.52
801 858 0.179012 GGGGTTTTCTTCCCACGTCA 60.179 55.000 3.37 0.00 46.26 4.35
1358 1415 0.386476 GTATACCACATCACCGCGGA 59.614 55.000 35.90 11.57 0.00 5.54
1455 1742 7.482654 TGTGATCATTTAGTAGCTGTTATGC 57.517 36.000 0.00 0.00 0.00 3.14
1872 2166 7.040823 ACTGAATTTTGGTCAGAACTGAAGATC 60.041 37.037 8.36 0.00 44.44 2.75
2045 2339 1.000396 GGGCTTCTGCATTGGAGGT 60.000 57.895 5.27 0.00 41.91 3.85
2486 2780 7.738345 AGTTTGCTTTTGTTATGTTGAACAAC 58.262 30.769 0.62 10.28 46.31 3.32
2598 2892 8.739972 AGCATGGTTTAGTTTTACCTTTATCTG 58.260 33.333 0.00 0.00 35.41 2.90
2762 3056 9.121658 TGTAAATTGTAGTTACACATTCCAACA 57.878 29.630 0.00 1.26 36.71 3.33
2795 3089 6.974622 GCAGGTTGTAATTTCATACTGAATGG 59.025 38.462 15.78 0.00 36.11 3.16
3181 3475 4.699257 CAGCAGTCTTTTGATTAAGAGCCT 59.301 41.667 0.00 0.00 34.95 4.58
3243 3537 4.101585 ACACTTGTTTGATCTGTCTCCTCA 59.898 41.667 0.00 0.00 0.00 3.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
64 65 8.038492 TGCATTGTATTTTTATTTCCTTTGGC 57.962 30.769 0.00 0.00 0.00 4.52
407 432 0.469917 CCTAGTTCGTGCCATCCCAT 59.530 55.000 0.00 0.00 0.00 4.00
408 433 0.907704 ACCTAGTTCGTGCCATCCCA 60.908 55.000 0.00 0.00 0.00 4.37
409 434 0.252197 AACCTAGTTCGTGCCATCCC 59.748 55.000 0.00 0.00 0.00 3.85
411 436 2.930682 GAGAAACCTAGTTCGTGCCATC 59.069 50.000 0.00 0.00 32.50 3.51
412 437 2.354805 GGAGAAACCTAGTTCGTGCCAT 60.355 50.000 0.00 0.00 35.41 4.40
414 439 1.723220 GGAGAAACCTAGTTCGTGCC 58.277 55.000 0.00 0.00 35.41 5.01
416 441 1.347320 GCGGAGAAACCTAGTTCGTG 58.653 55.000 0.00 0.00 36.31 4.35
417 442 0.109412 CGCGGAGAAACCTAGTTCGT 60.109 55.000 0.00 0.00 36.31 3.85
420 445 1.079336 GCCGCGGAGAAACCTAGTT 60.079 57.895 33.48 0.00 36.31 2.24
422 447 2.202892 GGCCGCGGAGAAACCTAG 60.203 66.667 33.48 0.00 36.31 3.02
558 588 4.503910 TGTTCAGCGATTACACAGCTAAT 58.496 39.130 0.00 0.00 39.48 1.73
579 609 8.545229 TTTTCTGCTCTCTATTTCTCTTCTTG 57.455 34.615 0.00 0.00 0.00 3.02
622 652 0.779997 AATGTCCTGCCCTTTGTCCT 59.220 50.000 0.00 0.00 0.00 3.85
630 660 2.351738 CGAAAACTCAAATGTCCTGCCC 60.352 50.000 0.00 0.00 0.00 5.36
631 661 2.552315 TCGAAAACTCAAATGTCCTGCC 59.448 45.455 0.00 0.00 0.00 4.85
632 662 3.365364 CCTCGAAAACTCAAATGTCCTGC 60.365 47.826 0.00 0.00 0.00 4.85
633 663 3.365364 GCCTCGAAAACTCAAATGTCCTG 60.365 47.826 0.00 0.00 0.00 3.86
634 664 2.814336 GCCTCGAAAACTCAAATGTCCT 59.186 45.455 0.00 0.00 0.00 3.85
635 665 2.552315 TGCCTCGAAAACTCAAATGTCC 59.448 45.455 0.00 0.00 0.00 4.02
636 666 3.896648 TGCCTCGAAAACTCAAATGTC 57.103 42.857 0.00 0.00 0.00 3.06
637 667 3.632145 AGTTGCCTCGAAAACTCAAATGT 59.368 39.130 2.78 0.00 30.87 2.71
638 668 4.228912 AGTTGCCTCGAAAACTCAAATG 57.771 40.909 2.78 0.00 30.87 2.32
645 675 0.536460 TGGGGAGTTGCCTCGAAAAC 60.536 55.000 0.00 0.00 41.55 2.43
649 679 3.691342 CGTGGGGAGTTGCCTCGA 61.691 66.667 0.00 0.00 41.55 4.04
651 681 2.047179 GACGTGGGGAGTTGCCTC 60.047 66.667 0.00 0.00 37.80 4.70
653 683 2.047179 GAGACGTGGGGAGTTGCC 60.047 66.667 0.00 0.00 0.00 4.52
655 685 2.663196 GGGAGACGTGGGGAGTTG 59.337 66.667 0.00 0.00 0.00 3.16
656 686 2.606826 GGGGAGACGTGGGGAGTT 60.607 66.667 0.00 0.00 0.00 3.01
657 687 3.602030 AGGGGAGACGTGGGGAGT 61.602 66.667 0.00 0.00 0.00 3.85
659 689 4.393778 GGAGGGGAGACGTGGGGA 62.394 72.222 0.00 0.00 0.00 4.81
801 858 5.230746 TGGAATAGGAGGGTAGTTACCTT 57.769 43.478 8.16 0.34 45.72 3.50
810 867 0.474184 CGGCAATGGAATAGGAGGGT 59.526 55.000 0.00 0.00 0.00 4.34
1030 1087 1.375908 GGTGATGCTTGGCAGACGA 60.376 57.895 0.00 0.00 43.65 4.20
1358 1415 7.342581 AACTGGATGTTTTTACCATTTGGTTT 58.657 30.769 7.69 0.00 39.84 3.27
1455 1742 7.878477 ATCTTTTGCATTACAAGACAACATG 57.122 32.000 0.00 0.00 40.06 3.21
2027 2321 1.000396 ACCTCCAATGCAGAAGCCC 60.000 57.895 0.00 0.00 41.13 5.19
2045 2339 3.118261 ACAACTTCAGCTTCTCCTTGTCA 60.118 43.478 0.00 0.00 0.00 3.58
2486 2780 7.962917 ACTTGTTCAACATAACAAAAGCAAAG 58.037 30.769 0.00 0.00 45.88 2.77
2795 3089 6.500684 TTTCTTCACTTAGTCATTGATGGC 57.499 37.500 0.00 0.00 0.00 4.40
3074 3368 5.309543 TCTGGTGGAGATTTTTCTTGTCCTA 59.690 40.000 0.00 0.00 0.00 2.94
3160 3454 5.877564 ACTAGGCTCTTAATCAAAAGACTGC 59.122 40.000 0.00 0.00 32.18 4.40
3181 3475 6.403049 TGAACTTCAAAGAGTGTTGTGACTA 58.597 36.000 0.00 0.00 0.00 2.59
3243 3537 4.141620 TGAGACTGACTTGGCTCTTTCTTT 60.142 41.667 0.00 0.00 0.00 2.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.