Multiple sequence alignment - TraesCS5B01G539200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G539200 chr5B 100.000 2550 0 0 1 2550 694176511 694179060 0.000000e+00 4710
1 TraesCS5B01G539200 chr5B 86.414 1163 86 31 617 1734 694299163 694300298 0.000000e+00 1206
2 TraesCS5B01G539200 chr5B 85.987 471 42 14 1285 1741 710336177 710336637 1.370000e-132 483
3 TraesCS5B01G539200 chr5B 94.191 241 14 0 1057 1297 710335921 710336161 4.010000e-98 368
4 TraesCS5B01G539200 chr5B 85.312 320 27 10 1772 2079 694302325 694302636 1.900000e-81 313
5 TraesCS5B01G539200 chr5B 90.604 149 6 5 1638 1779 694300301 694300448 9.310000e-45 191
6 TraesCS5B01G539200 chr5B 81.702 235 16 14 1853 2073 710338041 710338262 1.210000e-38 171
7 TraesCS5B01G539200 chr5D 93.633 1335 47 8 1 1300 559900380 559901711 0.000000e+00 1960
8 TraesCS5B01G539200 chr5D 88.577 1497 104 31 622 2079 556378342 556376874 0.000000e+00 1755
9 TraesCS5B01G539200 chr5D 86.383 470 33 18 1285 1741 559901722 559902173 3.810000e-133 484
10 TraesCS5B01G539200 chr5D 85.909 220 16 10 1853 2069 559902264 559902471 1.190000e-53 220
11 TraesCS5B01G539200 chr4A 91.474 1431 91 13 615 2032 613422476 613423888 0.000000e+00 1938
12 TraesCS5B01G539200 chr4A 86.049 1025 83 17 624 1627 613567710 613568695 0.000000e+00 1046
13 TraesCS5B01G539200 chr4A 93.857 586 30 2 1 581 613421721 613422305 0.000000e+00 878
14 TraesCS5B01G539200 chr4A 86.603 418 22 19 1636 2032 613568861 613569265 5.040000e-117 431
15 TraesCS5B01G539200 chr4A 78.551 345 52 9 1305 1635 613319443 613319107 9.250000e-50 207
16 TraesCS5B01G539200 chr4A 89.655 145 15 0 1359 1503 604827611 604827467 4.330000e-43 185
17 TraesCS5B01G539200 chr4A 88.776 98 7 1 1898 1995 613317959 613317866 1.600000e-22 117


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G539200 chr5B 694176511 694179060 2549 False 4710.000000 4710 100.000000 1 2550 1 chr5B.!!$F1 2549
1 TraesCS5B01G539200 chr5B 694299163 694302636 3473 False 570.000000 1206 87.443333 617 2079 3 chr5B.!!$F2 1462
2 TraesCS5B01G539200 chr5B 710335921 710338262 2341 False 340.666667 483 87.293333 1057 2073 3 chr5B.!!$F3 1016
3 TraesCS5B01G539200 chr5D 556376874 556378342 1468 True 1755.000000 1755 88.577000 622 2079 1 chr5D.!!$R1 1457
4 TraesCS5B01G539200 chr5D 559900380 559902471 2091 False 888.000000 1960 88.641667 1 2069 3 chr5D.!!$F1 2068
5 TraesCS5B01G539200 chr4A 613421721 613423888 2167 False 1408.000000 1938 92.665500 1 2032 2 chr4A.!!$F1 2031
6 TraesCS5B01G539200 chr4A 613567710 613569265 1555 False 738.500000 1046 86.326000 624 2032 2 chr4A.!!$F2 1408

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
612 682 0.109132 CGCCAACCTGCCATCTTTTC 60.109 55.0 0.0 0.0 0.0 2.29 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2479 6232 0.037232 GACTAGCAACCGTCTTGCCT 60.037 55.0 10.57 3.07 45.98 4.75 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 3.244422 ACCACCGAGAGCAAATTACTTCA 60.244 43.478 0.00 0.00 0.00 3.02
84 90 4.348168 ACTTCTCTTTTGCTTCCTCCACTA 59.652 41.667 0.00 0.00 0.00 2.74
191 197 3.355378 TGGCACCTCATTGACTAATTGG 58.645 45.455 0.00 0.00 0.00 3.16
261 267 0.394899 GCATAGCTTCCAGGCTTGGT 60.395 55.000 15.41 0.00 45.26 3.67
266 272 0.328258 GCTTCCAGGCTTGGTAAGGA 59.672 55.000 15.41 0.00 45.26 3.36
290 296 8.877779 GGATATATAGCTAGCAGTCACAATTTG 58.122 37.037 18.83 0.00 0.00 2.32
361 369 3.181514 CCGTCCGTACAAATTTGTGGATC 60.182 47.826 29.72 20.13 42.31 3.36
399 407 8.651389 ACTCAAGCTATATTGGCACTTTATCTA 58.349 33.333 0.00 0.00 0.00 1.98
449 457 4.730903 GCAAATGATGATGCACACTGAGAG 60.731 45.833 0.00 0.00 42.12 3.20
462 470 2.812591 CACTGAGAGAAAGTGCTGCATT 59.187 45.455 5.27 0.00 38.72 3.56
463 471 3.072944 ACTGAGAGAAAGTGCTGCATTC 58.927 45.455 5.27 6.75 0.00 2.67
604 674 3.372730 TTGCATCGCCAACCTGCC 61.373 61.111 0.00 0.00 35.02 4.85
612 682 0.109132 CGCCAACCTGCCATCTTTTC 60.109 55.000 0.00 0.00 0.00 2.29
738 887 8.164070 CCACCTTCTAAAGCCATATATTTAGGT 58.836 37.037 11.45 0.00 38.79 3.08
899 1050 0.782384 CACTTCGTACGACACAAGGC 59.218 55.000 19.36 0.00 0.00 4.35
902 1053 0.386352 TTCGTACGACACAAGGCGAG 60.386 55.000 19.36 0.00 0.00 5.03
911 1062 1.308998 CACAAGGCGAGTTTTCAGGT 58.691 50.000 0.00 0.00 0.00 4.00
912 1063 2.158871 ACACAAGGCGAGTTTTCAGGTA 60.159 45.455 0.00 0.00 0.00 3.08
1017 1176 2.349580 CCTGATGCGTATGAATATGCCG 59.650 50.000 11.11 0.00 43.03 5.69
1234 1395 2.880879 CGCACACCGTCATCTCCG 60.881 66.667 0.00 0.00 0.00 4.63
1240 1401 2.404995 ACCGTCATCTCCGTCGGAC 61.405 63.158 10.71 0.00 44.86 4.79
1242 1403 2.404186 CGTCATCTCCGTCGGACCA 61.404 63.158 10.71 0.00 0.00 4.02
1243 1404 1.888018 GTCATCTCCGTCGGACCAA 59.112 57.895 10.71 0.00 0.00 3.67
1263 1424 4.950479 CCGAGCAAGGCATCTTCT 57.050 55.556 0.00 0.00 0.00 2.85
1286 1501 1.464997 GCACAAGGTAGTAGCAGCAAC 59.535 52.381 1.58 0.00 0.00 4.17
1290 1513 0.531200 AGGTAGTAGCAGCAACCGAC 59.469 55.000 1.58 0.00 37.09 4.79
1312 1535 6.308282 CGACCTCTCTGTTGTACAACTTATTC 59.692 42.308 32.58 19.82 41.67 1.75
1316 1539 8.037758 CCTCTCTGTTGTACAACTTATTCTGAT 58.962 37.037 32.58 0.00 41.67 2.90
1327 1550 8.006298 ACAACTTATTCTGATTTTTGACACCA 57.994 30.769 0.00 0.00 0.00 4.17
1334 1557 2.560542 TGATTTTTGACACCATTCCGGG 59.439 45.455 0.00 0.00 40.22 5.73
1336 1562 1.904287 TTTTGACACCATTCCGGGAG 58.096 50.000 0.00 0.00 40.22 4.30
1347 1576 3.306364 CCATTCCGGGAGATCATCTGTAC 60.306 52.174 0.00 0.00 0.00 2.90
1355 1588 6.407074 CCGGGAGATCATCTGTACTAAACTTT 60.407 42.308 0.00 0.00 0.00 2.66
1356 1589 7.042335 CGGGAGATCATCTGTACTAAACTTTT 58.958 38.462 0.00 0.00 0.00 2.27
1366 1599 8.032952 TCTGTACTAAACTTTTGCTGATGATG 57.967 34.615 0.00 0.00 0.00 3.07
1373 1606 3.065786 ACTTTTGCTGATGATGTATGGCG 59.934 43.478 0.00 0.00 0.00 5.69
1375 1608 0.886043 TGCTGATGATGTATGGCGCC 60.886 55.000 22.73 22.73 0.00 6.53
1376 1609 1.580845 GCTGATGATGTATGGCGCCC 61.581 60.000 26.77 9.46 0.00 6.13
1589 1847 7.808381 TGTATATGAAATCGTAGTTAGCTGCTC 59.192 37.037 4.91 0.00 0.00 4.26
1604 1862 1.524355 CTGCTCGCGACTTATGATTGG 59.476 52.381 3.71 0.00 0.00 3.16
1629 1890 9.186323 GGTAGATAGATTGTATATATGCAAGCG 57.814 37.037 21.05 0.00 42.31 4.68
1630 1891 9.952188 GTAGATAGATTGTATATATGCAAGCGA 57.048 33.333 21.05 17.92 42.31 4.93
1631 1892 8.864069 AGATAGATTGTATATATGCAAGCGAC 57.136 34.615 21.05 16.64 42.31 5.19
1633 1894 9.307121 GATAGATTGTATATATGCAAGCGACTT 57.693 33.333 21.05 10.13 42.31 3.01
1825 5540 7.315142 TGGAACTTGTTGAATGCTATGAATTC 58.685 34.615 0.00 0.00 35.10 2.17
1863 5599 2.666317 GGGGGTGGATGTCATTTTAGG 58.334 52.381 0.00 0.00 0.00 2.69
1880 5616 5.744666 TTTAGGAAACCAAGAACAGTTCG 57.255 39.130 7.68 0.00 34.02 3.95
1883 5619 4.124970 AGGAAACCAAGAACAGTTCGTAC 58.875 43.478 7.68 0.00 34.02 3.67
2000 5741 2.346803 TGCTGAACCAAATAGCGTCTC 58.653 47.619 0.00 0.00 40.24 3.36
2006 5747 4.929808 TGAACCAAATAGCGTCTCTTCTTC 59.070 41.667 0.00 0.00 0.00 2.87
2045 5798 0.389426 GTACGTCGTCATGGCCACTT 60.389 55.000 8.16 0.00 0.00 3.16
2050 5803 2.271800 GTCGTCATGGCCACTTAAGAG 58.728 52.381 8.16 0.27 0.00 2.85
2086 5839 7.643569 TGACATAATCTGGCATACAAAATGT 57.356 32.000 0.00 0.00 38.24 2.71
2087 5840 8.065473 TGACATAATCTGGCATACAAAATGTT 57.935 30.769 0.00 0.00 38.24 2.71
2088 5841 7.975058 TGACATAATCTGGCATACAAAATGTTG 59.025 33.333 0.00 0.00 38.24 3.33
2089 5842 8.065473 ACATAATCTGGCATACAAAATGTTGA 57.935 30.769 1.62 0.00 38.20 3.18
2090 5843 8.530311 ACATAATCTGGCATACAAAATGTTGAA 58.470 29.630 1.62 0.00 38.20 2.69
2091 5844 9.537192 CATAATCTGGCATACAAAATGTTGAAT 57.463 29.630 1.62 0.00 38.20 2.57
2092 5845 7.837202 AATCTGGCATACAAAATGTTGAATG 57.163 32.000 1.62 0.00 38.20 2.67
2093 5846 6.587206 TCTGGCATACAAAATGTTGAATGA 57.413 33.333 1.62 0.00 38.20 2.57
2094 5847 6.990798 TCTGGCATACAAAATGTTGAATGAA 58.009 32.000 1.62 0.00 38.20 2.57
2095 5848 7.440198 TCTGGCATACAAAATGTTGAATGAAA 58.560 30.769 1.62 0.00 38.20 2.69
2096 5849 7.930325 TCTGGCATACAAAATGTTGAATGAAAA 59.070 29.630 1.62 0.00 38.20 2.29
2097 5850 8.442632 TGGCATACAAAATGTTGAATGAAAAA 57.557 26.923 1.62 0.00 38.20 1.94
2163 5916 5.861222 AAAACAAAGAACAAGTGCAAAGG 57.139 34.783 0.00 0.00 0.00 3.11
2164 5917 4.799564 AACAAAGAACAAGTGCAAAGGA 57.200 36.364 0.00 0.00 0.00 3.36
2165 5918 4.799564 ACAAAGAACAAGTGCAAAGGAA 57.200 36.364 0.00 0.00 0.00 3.36
2166 5919 5.343307 ACAAAGAACAAGTGCAAAGGAAT 57.657 34.783 0.00 0.00 0.00 3.01
2167 5920 5.111293 ACAAAGAACAAGTGCAAAGGAATG 58.889 37.500 0.00 0.00 0.00 2.67
2168 5921 4.326504 AAGAACAAGTGCAAAGGAATGG 57.673 40.909 0.00 0.00 0.00 3.16
2169 5922 3.565307 AGAACAAGTGCAAAGGAATGGA 58.435 40.909 0.00 0.00 0.00 3.41
2170 5923 3.960102 AGAACAAGTGCAAAGGAATGGAA 59.040 39.130 0.00 0.00 0.00 3.53
2171 5924 4.405358 AGAACAAGTGCAAAGGAATGGAAA 59.595 37.500 0.00 0.00 0.00 3.13
2172 5925 4.751767 ACAAGTGCAAAGGAATGGAAAA 57.248 36.364 0.00 0.00 0.00 2.29
2173 5926 5.294734 ACAAGTGCAAAGGAATGGAAAAT 57.705 34.783 0.00 0.00 0.00 1.82
2174 5927 6.418057 ACAAGTGCAAAGGAATGGAAAATA 57.582 33.333 0.00 0.00 0.00 1.40
2175 5928 6.458210 ACAAGTGCAAAGGAATGGAAAATAG 58.542 36.000 0.00 0.00 0.00 1.73
2176 5929 6.041979 ACAAGTGCAAAGGAATGGAAAATAGT 59.958 34.615 0.00 0.00 0.00 2.12
2177 5930 6.029346 AGTGCAAAGGAATGGAAAATAGTG 57.971 37.500 0.00 0.00 0.00 2.74
2178 5931 5.774690 AGTGCAAAGGAATGGAAAATAGTGA 59.225 36.000 0.00 0.00 0.00 3.41
2179 5932 6.267471 AGTGCAAAGGAATGGAAAATAGTGAA 59.733 34.615 0.00 0.00 0.00 3.18
2180 5933 7.038799 AGTGCAAAGGAATGGAAAATAGTGAAT 60.039 33.333 0.00 0.00 0.00 2.57
2181 5934 8.250332 GTGCAAAGGAATGGAAAATAGTGAATA 58.750 33.333 0.00 0.00 0.00 1.75
2182 5935 8.250332 TGCAAAGGAATGGAAAATAGTGAATAC 58.750 33.333 0.00 0.00 0.00 1.89
2183 5936 7.706607 GCAAAGGAATGGAAAATAGTGAATACC 59.293 37.037 0.00 0.00 0.00 2.73
2184 5937 7.568199 AAGGAATGGAAAATAGTGAATACCG 57.432 36.000 0.00 0.00 0.00 4.02
2185 5938 6.062095 AGGAATGGAAAATAGTGAATACCGG 58.938 40.000 0.00 0.00 0.00 5.28
2186 5939 5.826208 GGAATGGAAAATAGTGAATACCGGT 59.174 40.000 13.98 13.98 0.00 5.28
2187 5940 6.993902 GGAATGGAAAATAGTGAATACCGGTA 59.006 38.462 18.46 18.46 0.00 4.02
2188 5941 7.499895 GGAATGGAAAATAGTGAATACCGGTAA 59.500 37.037 20.22 0.21 0.00 2.85
2189 5942 8.810990 AATGGAAAATAGTGAATACCGGTAAA 57.189 30.769 20.22 4.55 0.00 2.01
2190 5943 7.852971 TGGAAAATAGTGAATACCGGTAAAG 57.147 36.000 20.22 0.00 0.00 1.85
2191 5944 7.622713 TGGAAAATAGTGAATACCGGTAAAGA 58.377 34.615 20.22 0.00 0.00 2.52
2192 5945 8.102047 TGGAAAATAGTGAATACCGGTAAAGAA 58.898 33.333 20.22 0.00 0.00 2.52
2193 5946 8.393366 GGAAAATAGTGAATACCGGTAAAGAAC 58.607 37.037 20.22 14.23 0.00 3.01
2194 5947 7.854557 AAATAGTGAATACCGGTAAAGAACC 57.145 36.000 20.22 4.91 45.77 3.62
2217 5970 9.665719 AACCAAATGAAAACAATAGAAAACTGT 57.334 25.926 0.00 0.00 0.00 3.55
2218 5971 9.097257 ACCAAATGAAAACAATAGAAAACTGTG 57.903 29.630 0.00 0.00 0.00 3.66
2219 5972 8.550376 CCAAATGAAAACAATAGAAAACTGTGG 58.450 33.333 0.00 0.00 0.00 4.17
2220 5973 9.311916 CAAATGAAAACAATAGAAAACTGTGGA 57.688 29.630 0.00 0.00 0.00 4.02
2221 5974 9.883142 AAATGAAAACAATAGAAAACTGTGGAA 57.117 25.926 0.00 0.00 0.00 3.53
2222 5975 8.871686 ATGAAAACAATAGAAAACTGTGGAAC 57.128 30.769 0.00 0.00 37.35 3.62
2243 5996 8.934825 TGGAACACAAAGAAAGAAAGAAAAATG 58.065 29.630 0.00 0.00 0.00 2.32
2244 5997 9.150348 GGAACACAAAGAAAGAAAGAAAAATGA 57.850 29.630 0.00 0.00 0.00 2.57
2246 5999 9.927668 AACACAAAGAAAGAAAGAAAAATGAGA 57.072 25.926 0.00 0.00 0.00 3.27
2247 6000 9.927668 ACACAAAGAAAGAAAGAAAAATGAGAA 57.072 25.926 0.00 0.00 0.00 2.87
2264 6017 9.500785 AAAATGAGAAAGAAAAGAAAAACCACA 57.499 25.926 0.00 0.00 0.00 4.17
2265 6018 8.707938 AATGAGAAAGAAAAGAAAAACCACAG 57.292 30.769 0.00 0.00 0.00 3.66
2266 6019 7.461182 TGAGAAAGAAAAGAAAAACCACAGA 57.539 32.000 0.00 0.00 0.00 3.41
2267 6020 7.891561 TGAGAAAGAAAAGAAAAACCACAGAA 58.108 30.769 0.00 0.00 0.00 3.02
2268 6021 8.364142 TGAGAAAGAAAAGAAAAACCACAGAAA 58.636 29.630 0.00 0.00 0.00 2.52
2269 6022 9.203421 GAGAAAGAAAAGAAAAACCACAGAAAA 57.797 29.630 0.00 0.00 0.00 2.29
2270 6023 9.554395 AGAAAGAAAAGAAAAACCACAGAAAAA 57.446 25.926 0.00 0.00 0.00 1.94
2271 6024 9.594038 GAAAGAAAAGAAAAACCACAGAAAAAC 57.406 29.630 0.00 0.00 0.00 2.43
2272 6025 8.669946 AAGAAAAGAAAAACCACAGAAAAACA 57.330 26.923 0.00 0.00 0.00 2.83
2273 6026 8.846943 AGAAAAGAAAAACCACAGAAAAACAT 57.153 26.923 0.00 0.00 0.00 2.71
2274 6027 8.720562 AGAAAAGAAAAACCACAGAAAAACATG 58.279 29.630 0.00 0.00 0.00 3.21
2275 6028 8.614469 AAAAGAAAAACCACAGAAAAACATGA 57.386 26.923 0.00 0.00 0.00 3.07
2276 6029 8.614469 AAAGAAAAACCACAGAAAAACATGAA 57.386 26.923 0.00 0.00 0.00 2.57
2277 6030 8.614469 AAGAAAAACCACAGAAAAACATGAAA 57.386 26.923 0.00 0.00 0.00 2.69
2278 6031 8.255394 AGAAAAACCACAGAAAAACATGAAAG 57.745 30.769 0.00 0.00 0.00 2.62
2279 6032 8.093927 AGAAAAACCACAGAAAAACATGAAAGA 58.906 29.630 0.00 0.00 0.00 2.52
2280 6033 8.614469 AAAAACCACAGAAAAACATGAAAGAA 57.386 26.923 0.00 0.00 0.00 2.52
2281 6034 8.614469 AAAACCACAGAAAAACATGAAAGAAA 57.386 26.923 0.00 0.00 0.00 2.52
2282 6035 8.614469 AAACCACAGAAAAACATGAAAGAAAA 57.386 26.923 0.00 0.00 0.00 2.29
2283 6036 8.614469 AACCACAGAAAAACATGAAAGAAAAA 57.386 26.923 0.00 0.00 0.00 1.94
2284 6037 8.255394 ACCACAGAAAAACATGAAAGAAAAAG 57.745 30.769 0.00 0.00 0.00 2.27
2285 6038 7.877612 ACCACAGAAAAACATGAAAGAAAAAGT 59.122 29.630 0.00 0.00 0.00 2.66
2286 6039 8.170553 CCACAGAAAAACATGAAAGAAAAAGTG 58.829 33.333 0.00 0.00 0.00 3.16
2287 6040 8.924691 CACAGAAAAACATGAAAGAAAAAGTGA 58.075 29.630 0.00 0.00 0.00 3.41
2288 6041 9.143631 ACAGAAAAACATGAAAGAAAAAGTGAG 57.856 29.630 0.00 0.00 0.00 3.51
2289 6042 9.357652 CAGAAAAACATGAAAGAAAAAGTGAGA 57.642 29.630 0.00 0.00 0.00 3.27
2290 6043 9.927668 AGAAAAACATGAAAGAAAAAGTGAGAA 57.072 25.926 0.00 0.00 0.00 2.87
2294 6047 9.874205 AAACATGAAAGAAAAAGTGAGAAATCA 57.126 25.926 0.00 0.00 0.00 2.57
2295 6048 9.874205 AACATGAAAGAAAAAGTGAGAAATCAA 57.126 25.926 0.00 0.00 0.00 2.57
2296 6049 9.874205 ACATGAAAGAAAAAGTGAGAAATCAAA 57.126 25.926 0.00 0.00 0.00 2.69
2335 6088 9.522804 AAAAACAAAGTATAACGATGAAGCAAA 57.477 25.926 0.00 0.00 0.00 3.68
2336 6089 8.728088 AAACAAAGTATAACGATGAAGCAAAG 57.272 30.769 0.00 0.00 0.00 2.77
2337 6090 7.667043 ACAAAGTATAACGATGAAGCAAAGA 57.333 32.000 0.00 0.00 0.00 2.52
2338 6091 8.094798 ACAAAGTATAACGATGAAGCAAAGAA 57.905 30.769 0.00 0.00 0.00 2.52
2339 6092 8.564574 ACAAAGTATAACGATGAAGCAAAGAAA 58.435 29.630 0.00 0.00 0.00 2.52
2340 6093 9.393249 CAAAGTATAACGATGAAGCAAAGAAAA 57.607 29.630 0.00 0.00 0.00 2.29
2341 6094 9.959749 AAAGTATAACGATGAAGCAAAGAAAAA 57.040 25.926 0.00 0.00 0.00 1.94
2401 6154 9.424319 ACAAAAGAAAAAGAAGAAGAAGAAACC 57.576 29.630 0.00 0.00 0.00 3.27
2402 6155 9.423061 CAAAAGAAAAAGAAGAAGAAGAAACCA 57.577 29.630 0.00 0.00 0.00 3.67
2403 6156 9.996554 AAAAGAAAAAGAAGAAGAAGAAACCAA 57.003 25.926 0.00 0.00 0.00 3.67
2404 6157 9.996554 AAAGAAAAAGAAGAAGAAGAAACCAAA 57.003 25.926 0.00 0.00 0.00 3.28
2405 6158 8.988064 AGAAAAAGAAGAAGAAGAAACCAAAC 57.012 30.769 0.00 0.00 0.00 2.93
2406 6159 8.585018 AGAAAAAGAAGAAGAAGAAACCAAACA 58.415 29.630 0.00 0.00 0.00 2.83
2407 6160 9.203421 GAAAAAGAAGAAGAAGAAACCAAACAA 57.797 29.630 0.00 0.00 0.00 2.83
2408 6161 9.554395 AAAAAGAAGAAGAAGAAACCAAACAAA 57.446 25.926 0.00 0.00 0.00 2.83
2409 6162 8.534333 AAAGAAGAAGAAGAAACCAAACAAAC 57.466 30.769 0.00 0.00 0.00 2.93
2410 6163 7.227049 AGAAGAAGAAGAAACCAAACAAACA 57.773 32.000 0.00 0.00 0.00 2.83
2411 6164 7.090808 AGAAGAAGAAGAAACCAAACAAACAC 58.909 34.615 0.00 0.00 0.00 3.32
2412 6165 6.339587 AGAAGAAGAAACCAAACAAACACA 57.660 33.333 0.00 0.00 0.00 3.72
2413 6166 6.935167 AGAAGAAGAAACCAAACAAACACAT 58.065 32.000 0.00 0.00 0.00 3.21
2414 6167 7.035612 AGAAGAAGAAACCAAACAAACACATC 58.964 34.615 0.00 0.00 0.00 3.06
2415 6168 6.530019 AGAAGAAACCAAACAAACACATCT 57.470 33.333 0.00 0.00 0.00 2.90
2416 6169 6.332630 AGAAGAAACCAAACAAACACATCTG 58.667 36.000 0.00 0.00 0.00 2.90
2417 6170 5.009854 AGAAACCAAACAAACACATCTGG 57.990 39.130 0.00 0.00 0.00 3.86
2418 6171 3.817709 AACCAAACAAACACATCTGGG 57.182 42.857 0.00 0.00 0.00 4.45
2419 6172 3.025322 ACCAAACAAACACATCTGGGA 57.975 42.857 0.00 0.00 0.00 4.37
2420 6173 3.370104 ACCAAACAAACACATCTGGGAA 58.630 40.909 0.00 0.00 0.00 3.97
2421 6174 3.966665 ACCAAACAAACACATCTGGGAAT 59.033 39.130 0.00 0.00 0.00 3.01
2422 6175 4.202243 ACCAAACAAACACATCTGGGAATG 60.202 41.667 0.00 0.00 0.00 2.67
2423 6176 4.039004 CCAAACAAACACATCTGGGAATGA 59.961 41.667 0.00 0.00 0.00 2.57
2424 6177 5.453057 CCAAACAAACACATCTGGGAATGAA 60.453 40.000 0.00 0.00 0.00 2.57
2425 6178 5.867903 AACAAACACATCTGGGAATGAAA 57.132 34.783 0.00 0.00 0.00 2.69
2426 6179 5.458041 ACAAACACATCTGGGAATGAAAG 57.542 39.130 0.00 0.00 0.00 2.62
2427 6180 5.139727 ACAAACACATCTGGGAATGAAAGA 58.860 37.500 0.00 0.00 0.00 2.52
2428 6181 5.242393 ACAAACACATCTGGGAATGAAAGAG 59.758 40.000 0.00 0.00 0.00 2.85
2429 6182 4.647564 ACACATCTGGGAATGAAAGAGT 57.352 40.909 0.00 0.00 0.00 3.24
2430 6183 4.330250 ACACATCTGGGAATGAAAGAGTG 58.670 43.478 0.00 0.00 0.00 3.51
2431 6184 3.693085 CACATCTGGGAATGAAAGAGTGG 59.307 47.826 0.00 0.00 0.00 4.00
2432 6185 3.331889 ACATCTGGGAATGAAAGAGTGGT 59.668 43.478 0.00 0.00 0.00 4.16
2433 6186 3.703001 TCTGGGAATGAAAGAGTGGTC 57.297 47.619 0.00 0.00 0.00 4.02
2434 6187 2.305927 TCTGGGAATGAAAGAGTGGTCC 59.694 50.000 0.00 0.00 0.00 4.46
2435 6188 2.307098 CTGGGAATGAAAGAGTGGTCCT 59.693 50.000 0.00 0.00 0.00 3.85
2436 6189 2.305927 TGGGAATGAAAGAGTGGTCCTC 59.694 50.000 0.00 0.00 40.80 3.71
2445 6198 1.501582 GAGTGGTCCTCTATTGGGCT 58.498 55.000 0.00 0.00 37.22 5.19
2446 6199 1.139853 GAGTGGTCCTCTATTGGGCTG 59.860 57.143 0.00 0.00 37.22 4.85
2447 6200 0.181350 GTGGTCCTCTATTGGGCTGG 59.819 60.000 0.00 0.00 0.00 4.85
2448 6201 1.149401 GGTCCTCTATTGGGCTGGC 59.851 63.158 0.00 0.00 0.00 4.85
2449 6202 1.149401 GTCCTCTATTGGGCTGGCC 59.851 63.158 14.23 14.23 0.00 5.36
2459 6212 3.451894 GGCTGGCCCATTTCCGTG 61.452 66.667 0.00 0.00 0.00 4.94
2460 6213 2.361104 GCTGGCCCATTTCCGTGA 60.361 61.111 0.00 0.00 0.00 4.35
2461 6214 2.409870 GCTGGCCCATTTCCGTGAG 61.410 63.158 0.00 0.00 0.00 3.51
2462 6215 1.002134 CTGGCCCATTTCCGTGAGT 60.002 57.895 0.00 0.00 0.00 3.41
2463 6216 1.303236 TGGCCCATTTCCGTGAGTG 60.303 57.895 0.00 0.00 0.00 3.51
2464 6217 2.700773 GGCCCATTTCCGTGAGTGC 61.701 63.158 0.00 0.00 0.00 4.40
2465 6218 1.675641 GCCCATTTCCGTGAGTGCT 60.676 57.895 0.00 0.00 0.00 4.40
2466 6219 1.926511 GCCCATTTCCGTGAGTGCTG 61.927 60.000 0.00 0.00 0.00 4.41
2467 6220 1.503542 CCATTTCCGTGAGTGCTGC 59.496 57.895 0.00 0.00 0.00 5.25
2468 6221 1.236616 CCATTTCCGTGAGTGCTGCA 61.237 55.000 0.00 0.00 0.00 4.41
2469 6222 0.592637 CATTTCCGTGAGTGCTGCAA 59.407 50.000 2.77 0.00 0.00 4.08
2470 6223 0.877071 ATTTCCGTGAGTGCTGCAAG 59.123 50.000 2.77 0.00 0.00 4.01
2471 6224 0.179059 TTTCCGTGAGTGCTGCAAGA 60.179 50.000 2.77 0.00 34.07 3.02
2472 6225 0.179059 TTCCGTGAGTGCTGCAAGAA 60.179 50.000 2.77 0.00 34.07 2.52
2473 6226 0.179059 TCCGTGAGTGCTGCAAGAAA 60.179 50.000 2.77 0.00 34.07 2.52
2474 6227 0.236711 CCGTGAGTGCTGCAAGAAAG 59.763 55.000 2.77 0.00 34.07 2.62
2475 6228 0.385223 CGTGAGTGCTGCAAGAAAGC 60.385 55.000 2.77 0.00 41.22 3.51
2476 6229 0.950116 GTGAGTGCTGCAAGAAAGCT 59.050 50.000 2.77 0.00 41.42 3.74
2477 6230 1.336125 GTGAGTGCTGCAAGAAAGCTT 59.664 47.619 2.77 0.00 41.42 3.74
2478 6231 1.605710 TGAGTGCTGCAAGAAAGCTTC 59.394 47.619 2.77 0.00 41.42 3.86
2479 6232 1.605710 GAGTGCTGCAAGAAAGCTTCA 59.394 47.619 2.77 0.00 41.42 3.02
2480 6233 1.607628 AGTGCTGCAAGAAAGCTTCAG 59.392 47.619 2.77 3.35 41.42 3.02
2481 6234 0.956633 TGCTGCAAGAAAGCTTCAGG 59.043 50.000 12.50 0.00 41.42 3.86
2482 6235 0.388263 GCTGCAAGAAAGCTTCAGGC 60.388 55.000 12.50 9.11 37.69 4.85
2483 6236 0.956633 CTGCAAGAAAGCTTCAGGCA 59.043 50.000 0.00 7.13 39.23 4.75
2484 6237 1.338973 CTGCAAGAAAGCTTCAGGCAA 59.661 47.619 0.00 0.00 39.39 4.52
2485 6238 1.338973 TGCAAGAAAGCTTCAGGCAAG 59.661 47.619 0.00 0.00 44.79 4.01
2486 6239 1.610522 GCAAGAAAGCTTCAGGCAAGA 59.389 47.619 0.00 0.00 44.79 3.02
2487 6240 2.606551 GCAAGAAAGCTTCAGGCAAGAC 60.607 50.000 0.00 0.00 44.79 3.01
2488 6241 1.517242 AGAAAGCTTCAGGCAAGACG 58.483 50.000 0.00 0.00 44.79 4.18
2489 6242 0.519077 GAAAGCTTCAGGCAAGACGG 59.481 55.000 0.00 0.00 44.79 4.79
2490 6243 0.179018 AAAGCTTCAGGCAAGACGGT 60.179 50.000 0.00 0.00 44.79 4.83
2491 6244 0.179018 AAGCTTCAGGCAAGACGGTT 60.179 50.000 0.00 0.00 44.79 4.44
2492 6245 0.886490 AGCTTCAGGCAAGACGGTTG 60.886 55.000 0.00 0.00 44.79 3.77
2493 6246 1.576421 CTTCAGGCAAGACGGTTGC 59.424 57.895 14.56 14.56 44.22 4.17
2494 6247 0.886490 CTTCAGGCAAGACGGTTGCT 60.886 55.000 20.18 7.50 44.36 3.91
2495 6248 0.394938 TTCAGGCAAGACGGTTGCTA 59.605 50.000 20.18 7.49 44.36 3.49
2496 6249 0.037326 TCAGGCAAGACGGTTGCTAG 60.037 55.000 20.18 14.26 44.36 3.42
2497 6250 0.320771 CAGGCAAGACGGTTGCTAGT 60.321 55.000 20.18 6.79 44.36 2.57
2498 6251 0.037232 AGGCAAGACGGTTGCTAGTC 60.037 55.000 20.18 7.42 44.36 2.59
2500 6253 1.351153 GCAAGACGGTTGCTAGTCTC 58.649 55.000 15.38 0.00 45.91 3.36
2501 6254 1.618861 CAAGACGGTTGCTAGTCTCG 58.381 55.000 0.00 0.00 45.91 4.04
2502 6255 0.109226 AAGACGGTTGCTAGTCTCGC 60.109 55.000 0.00 0.00 45.91 5.03
2503 6256 0.961358 AGACGGTTGCTAGTCTCGCT 60.961 55.000 0.00 0.00 43.52 4.93
2504 6257 0.731417 GACGGTTGCTAGTCTCGCTA 59.269 55.000 0.00 0.00 34.74 4.26
2505 6258 1.334243 GACGGTTGCTAGTCTCGCTAT 59.666 52.381 0.00 0.00 34.74 2.97
2506 6259 2.547211 GACGGTTGCTAGTCTCGCTATA 59.453 50.000 0.00 0.00 34.74 1.31
2507 6260 2.947652 ACGGTTGCTAGTCTCGCTATAA 59.052 45.455 0.00 0.00 0.00 0.98
2508 6261 3.243002 ACGGTTGCTAGTCTCGCTATAAC 60.243 47.826 0.00 0.00 0.00 1.89
2509 6262 3.640592 GGTTGCTAGTCTCGCTATAACC 58.359 50.000 0.00 0.36 38.47 2.85
2510 6263 3.298317 GTTGCTAGTCTCGCTATAACCG 58.702 50.000 0.00 0.00 0.00 4.44
2511 6264 2.842457 TGCTAGTCTCGCTATAACCGA 58.158 47.619 0.00 0.00 0.00 4.69
2521 6274 5.700722 TCGCTATAACCGAGACATAACAT 57.299 39.130 0.00 0.00 0.00 2.71
2522 6275 6.080648 TCGCTATAACCGAGACATAACATT 57.919 37.500 0.00 0.00 0.00 2.71
2523 6276 6.147581 TCGCTATAACCGAGACATAACATTC 58.852 40.000 0.00 0.00 0.00 2.67
2524 6277 5.059343 CGCTATAACCGAGACATAACATTCG 59.941 44.000 0.00 0.00 0.00 3.34
2525 6278 5.164080 GCTATAACCGAGACATAACATTCGC 60.164 44.000 0.00 0.00 0.00 4.70
2526 6279 2.961526 ACCGAGACATAACATTCGCT 57.038 45.000 0.00 0.00 0.00 4.93
2527 6280 4.380841 AACCGAGACATAACATTCGCTA 57.619 40.909 0.00 0.00 0.00 4.26
2528 6281 3.966154 ACCGAGACATAACATTCGCTAG 58.034 45.455 0.00 0.00 0.00 3.42
2529 6282 3.380637 ACCGAGACATAACATTCGCTAGT 59.619 43.478 0.00 0.00 0.00 2.57
2530 6283 3.731216 CCGAGACATAACATTCGCTAGTG 59.269 47.826 0.00 0.00 0.00 2.74
2531 6284 3.180584 CGAGACATAACATTCGCTAGTGC 59.819 47.826 0.00 0.00 0.00 4.40
2532 6285 4.363999 GAGACATAACATTCGCTAGTGCT 58.636 43.478 0.00 0.00 36.97 4.40
2533 6286 4.759782 AGACATAACATTCGCTAGTGCTT 58.240 39.130 0.00 0.00 36.97 3.91
2534 6287 5.178797 AGACATAACATTCGCTAGTGCTTT 58.821 37.500 0.00 0.00 36.97 3.51
2535 6288 5.063944 AGACATAACATTCGCTAGTGCTTTG 59.936 40.000 0.00 0.00 36.97 2.77
2536 6289 4.695455 ACATAACATTCGCTAGTGCTTTGT 59.305 37.500 0.00 0.00 36.97 2.83
2537 6290 3.813529 AACATTCGCTAGTGCTTTGTC 57.186 42.857 0.00 0.00 36.97 3.18
2538 6291 3.045601 ACATTCGCTAGTGCTTTGTCT 57.954 42.857 0.00 0.00 36.97 3.41
2539 6292 3.403038 ACATTCGCTAGTGCTTTGTCTT 58.597 40.909 0.00 0.00 36.97 3.01
2540 6293 3.187227 ACATTCGCTAGTGCTTTGTCTTG 59.813 43.478 0.00 0.00 36.97 3.02
2541 6294 1.148310 TCGCTAGTGCTTTGTCTTGC 58.852 50.000 0.00 0.00 36.97 4.01
2542 6295 1.151668 CGCTAGTGCTTTGTCTTGCT 58.848 50.000 0.00 0.00 36.97 3.91
2543 6296 1.532868 CGCTAGTGCTTTGTCTTGCTT 59.467 47.619 0.00 0.00 36.97 3.91
2544 6297 2.736721 CGCTAGTGCTTTGTCTTGCTTA 59.263 45.455 0.00 0.00 36.97 3.09
2545 6298 3.181526 CGCTAGTGCTTTGTCTTGCTTAG 60.182 47.826 0.00 0.00 36.97 2.18
2546 6299 3.748568 GCTAGTGCTTTGTCTTGCTTAGT 59.251 43.478 0.00 0.00 36.03 2.24
2547 6300 4.377841 GCTAGTGCTTTGTCTTGCTTAGTG 60.378 45.833 0.00 0.00 36.03 2.74
2548 6301 2.291741 AGTGCTTTGTCTTGCTTAGTGC 59.708 45.455 0.00 0.00 43.25 4.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
84 90 7.001073 ACTTCAAAACTCTATCAAAGAAGCCT 58.999 34.615 0.00 0.00 35.79 4.58
191 197 6.145338 TGAAAGCTACTATGTACCACTAGC 57.855 41.667 0.00 0.00 0.00 3.42
261 267 8.879427 TTGTGACTGCTAGCTATATATCCTTA 57.121 34.615 17.23 0.00 0.00 2.69
266 272 9.784531 AACAAATTGTGACTGCTAGCTATATAT 57.215 29.630 17.23 0.00 0.00 0.86
361 369 3.791973 AGCTTGAGTATCCTTGACGAG 57.208 47.619 0.00 0.00 0.00 4.18
449 457 3.688185 TGAGATGAGAATGCAGCACTTTC 59.312 43.478 0.00 0.00 33.63 2.62
462 470 2.303890 ACATGCAACAGGTGAGATGAGA 59.696 45.455 5.17 0.00 0.00 3.27
463 471 2.676839 GACATGCAACAGGTGAGATGAG 59.323 50.000 5.17 0.00 0.00 2.90
604 674 2.426024 CTGATGCACAGGGGAAAAGATG 59.574 50.000 8.03 0.00 42.39 2.90
738 887 6.479660 CCAACAAAAAGAAGCTGCTTAAATCA 59.520 34.615 15.95 0.00 0.00 2.57
899 1050 7.431249 TGGCTACTTATATACCTGAAAACTCG 58.569 38.462 0.00 0.00 0.00 4.18
902 1053 8.422566 AGACTGGCTACTTATATACCTGAAAAC 58.577 37.037 0.00 0.00 0.00 2.43
911 1062 7.700846 AGCTAAGGAGACTGGCTACTTATATA 58.299 38.462 15.53 0.00 46.18 0.86
912 1063 6.557568 AGCTAAGGAGACTGGCTACTTATAT 58.442 40.000 15.53 4.88 46.18 0.86
1017 1176 3.426568 GCAGGCGTGAGACCTTGC 61.427 66.667 11.29 0.00 43.69 4.01
1258 1419 3.193691 GCTACTACCTTGTGCTCAGAAGA 59.806 47.826 8.16 0.00 33.97 2.87
1263 1424 1.066858 GCTGCTACTACCTTGTGCTCA 60.067 52.381 0.00 0.00 0.00 4.26
1286 1501 2.296471 AGTTGTACAACAGAGAGGTCGG 59.704 50.000 33.93 0.00 43.47 4.79
1290 1513 7.378966 TCAGAATAAGTTGTACAACAGAGAGG 58.621 38.462 33.93 19.74 43.47 3.69
1312 1535 3.367292 CCCGGAATGGTGTCAAAAATCAG 60.367 47.826 0.73 0.00 35.15 2.90
1316 1539 2.158593 TCTCCCGGAATGGTGTCAAAAA 60.159 45.455 0.73 0.00 35.15 1.94
1327 1550 3.850752 AGTACAGATGATCTCCCGGAAT 58.149 45.455 0.73 0.00 0.00 3.01
1334 1557 8.386606 CAGCAAAAGTTTAGTACAGATGATCTC 58.613 37.037 0.00 0.00 0.00 2.75
1336 1562 8.256611 TCAGCAAAAGTTTAGTACAGATGATC 57.743 34.615 0.00 0.00 0.00 2.92
1347 1576 6.694411 GCCATACATCATCAGCAAAAGTTTAG 59.306 38.462 0.00 0.00 0.00 1.85
1355 1588 0.946528 GCGCCATACATCATCAGCAA 59.053 50.000 0.00 0.00 0.00 3.91
1356 1589 0.886043 GGCGCCATACATCATCAGCA 60.886 55.000 24.80 0.00 0.00 4.41
1373 1606 1.595109 GCAAACAACAAGGCAGGGC 60.595 57.895 0.00 0.00 0.00 5.19
1589 1847 5.939457 TCTATCTACCAATCATAAGTCGCG 58.061 41.667 0.00 0.00 0.00 5.87
1604 1862 9.952188 TCGCTTGCATATATACAATCTATCTAC 57.048 33.333 0.00 0.00 0.00 2.59
1622 1883 5.175127 TCATAAGTCATTAAGTCGCTTGCA 58.825 37.500 2.86 0.00 0.00 4.08
1825 5540 2.421529 CCCCCTTAACAGAAAGATCCCG 60.422 54.545 0.00 0.00 0.00 5.14
1860 5595 4.411256 ACGAACTGTTCTTGGTTTCCTA 57.589 40.909 17.60 0.00 0.00 2.94
1863 5599 5.107568 GCTAGTACGAACTGTTCTTGGTTTC 60.108 44.000 17.60 6.46 36.36 2.78
1883 5619 8.960591 TCCCTGATAATTTCAAAAAGAAGCTAG 58.039 33.333 0.00 0.00 37.57 3.42
1956 5697 6.379417 CAGCAATCTAATTTCCTCTCCCTTTT 59.621 38.462 0.00 0.00 0.00 2.27
1957 5698 5.890419 CAGCAATCTAATTTCCTCTCCCTTT 59.110 40.000 0.00 0.00 0.00 3.11
1958 5699 5.444176 CAGCAATCTAATTTCCTCTCCCTT 58.556 41.667 0.00 0.00 0.00 3.95
1959 5700 4.688321 GCAGCAATCTAATTTCCTCTCCCT 60.688 45.833 0.00 0.00 0.00 4.20
1960 5701 3.567585 GCAGCAATCTAATTTCCTCTCCC 59.432 47.826 0.00 0.00 0.00 4.30
1961 5702 4.275443 CAGCAGCAATCTAATTTCCTCTCC 59.725 45.833 0.00 0.00 0.00 3.71
2000 5741 1.879796 GCACCACAGGACAGGAAGAAG 60.880 57.143 0.00 0.00 0.00 2.85
2025 5778 1.080366 GTGGCCATGACGACGTACA 60.080 57.895 9.72 1.20 0.00 2.90
2045 5798 9.151471 GATTATGTCACTGTACTTTTGCTCTTA 57.849 33.333 0.00 0.00 0.00 2.10
2050 5803 6.546395 CCAGATTATGTCACTGTACTTTTGC 58.454 40.000 0.00 0.00 0.00 3.68
2140 5893 5.994668 TCCTTTGCACTTGTTCTTTGTTTTT 59.005 32.000 0.00 0.00 0.00 1.94
2141 5894 5.546526 TCCTTTGCACTTGTTCTTTGTTTT 58.453 33.333 0.00 0.00 0.00 2.43
2142 5895 5.146010 TCCTTTGCACTTGTTCTTTGTTT 57.854 34.783 0.00 0.00 0.00 2.83
2143 5896 4.799564 TCCTTTGCACTTGTTCTTTGTT 57.200 36.364 0.00 0.00 0.00 2.83
2144 5897 4.799564 TTCCTTTGCACTTGTTCTTTGT 57.200 36.364 0.00 0.00 0.00 2.83
2145 5898 4.508861 CCATTCCTTTGCACTTGTTCTTTG 59.491 41.667 0.00 0.00 0.00 2.77
2146 5899 4.405358 TCCATTCCTTTGCACTTGTTCTTT 59.595 37.500 0.00 0.00 0.00 2.52
2147 5900 3.960102 TCCATTCCTTTGCACTTGTTCTT 59.040 39.130 0.00 0.00 0.00 2.52
2148 5901 3.565307 TCCATTCCTTTGCACTTGTTCT 58.435 40.909 0.00 0.00 0.00 3.01
2149 5902 4.320608 TTCCATTCCTTTGCACTTGTTC 57.679 40.909 0.00 0.00 0.00 3.18
2150 5903 4.751767 TTTCCATTCCTTTGCACTTGTT 57.248 36.364 0.00 0.00 0.00 2.83
2151 5904 4.751767 TTTTCCATTCCTTTGCACTTGT 57.248 36.364 0.00 0.00 0.00 3.16
2152 5905 6.366877 CACTATTTTCCATTCCTTTGCACTTG 59.633 38.462 0.00 0.00 0.00 3.16
2153 5906 6.267471 TCACTATTTTCCATTCCTTTGCACTT 59.733 34.615 0.00 0.00 0.00 3.16
2154 5907 5.774690 TCACTATTTTCCATTCCTTTGCACT 59.225 36.000 0.00 0.00 0.00 4.40
2155 5908 6.024552 TCACTATTTTCCATTCCTTTGCAC 57.975 37.500 0.00 0.00 0.00 4.57
2156 5909 6.662865 TTCACTATTTTCCATTCCTTTGCA 57.337 33.333 0.00 0.00 0.00 4.08
2157 5910 7.706607 GGTATTCACTATTTTCCATTCCTTTGC 59.293 37.037 0.00 0.00 0.00 3.68
2158 5911 7.915397 CGGTATTCACTATTTTCCATTCCTTTG 59.085 37.037 0.00 0.00 0.00 2.77
2159 5912 7.068226 CCGGTATTCACTATTTTCCATTCCTTT 59.932 37.037 0.00 0.00 0.00 3.11
2160 5913 6.546034 CCGGTATTCACTATTTTCCATTCCTT 59.454 38.462 0.00 0.00 0.00 3.36
2161 5914 6.062095 CCGGTATTCACTATTTTCCATTCCT 58.938 40.000 0.00 0.00 0.00 3.36
2162 5915 5.826208 ACCGGTATTCACTATTTTCCATTCC 59.174 40.000 4.49 0.00 0.00 3.01
2163 5916 6.937436 ACCGGTATTCACTATTTTCCATTC 57.063 37.500 4.49 0.00 0.00 2.67
2164 5917 8.810990 TTTACCGGTATTCACTATTTTCCATT 57.189 30.769 16.67 0.00 0.00 3.16
2165 5918 8.269317 TCTTTACCGGTATTCACTATTTTCCAT 58.731 33.333 16.67 0.00 0.00 3.41
2166 5919 7.622713 TCTTTACCGGTATTCACTATTTTCCA 58.377 34.615 16.67 0.00 0.00 3.53
2167 5920 8.393366 GTTCTTTACCGGTATTCACTATTTTCC 58.607 37.037 16.67 0.00 0.00 3.13
2168 5921 8.393366 GGTTCTTTACCGGTATTCACTATTTTC 58.607 37.037 16.67 0.00 37.12 2.29
2169 5922 8.272545 GGTTCTTTACCGGTATTCACTATTTT 57.727 34.615 16.67 0.00 37.12 1.82
2170 5923 7.854557 GGTTCTTTACCGGTATTCACTATTT 57.145 36.000 16.67 0.00 37.12 1.40
2191 5944 9.665719 ACAGTTTTCTATTGTTTTCATTTGGTT 57.334 25.926 0.00 0.00 0.00 3.67
2192 5945 9.097257 CACAGTTTTCTATTGTTTTCATTTGGT 57.903 29.630 0.00 0.00 0.00 3.67
2193 5946 8.550376 CCACAGTTTTCTATTGTTTTCATTTGG 58.450 33.333 0.00 0.00 0.00 3.28
2194 5947 9.311916 TCCACAGTTTTCTATTGTTTTCATTTG 57.688 29.630 0.00 0.00 0.00 2.32
2195 5948 9.883142 TTCCACAGTTTTCTATTGTTTTCATTT 57.117 25.926 0.00 0.00 0.00 2.32
2196 5949 9.313118 GTTCCACAGTTTTCTATTGTTTTCATT 57.687 29.630 0.00 0.00 0.00 2.57
2197 5950 8.474025 TGTTCCACAGTTTTCTATTGTTTTCAT 58.526 29.630 0.00 0.00 0.00 2.57
2198 5951 7.757624 GTGTTCCACAGTTTTCTATTGTTTTCA 59.242 33.333 0.00 0.00 34.08 2.69
2199 5952 7.757624 TGTGTTCCACAGTTTTCTATTGTTTTC 59.242 33.333 0.00 0.00 39.62 2.29
2200 5953 7.607250 TGTGTTCCACAGTTTTCTATTGTTTT 58.393 30.769 0.00 0.00 39.62 2.43
2201 5954 7.164230 TGTGTTCCACAGTTTTCTATTGTTT 57.836 32.000 0.00 0.00 39.62 2.83
2202 5955 6.767524 TGTGTTCCACAGTTTTCTATTGTT 57.232 33.333 0.00 0.00 39.62 2.83
2203 5956 6.767524 TTGTGTTCCACAGTTTTCTATTGT 57.232 33.333 0.00 0.00 45.39 2.71
2204 5957 7.479980 TCTTTGTGTTCCACAGTTTTCTATTG 58.520 34.615 0.00 0.00 45.39 1.90
2205 5958 7.639113 TCTTTGTGTTCCACAGTTTTCTATT 57.361 32.000 0.00 0.00 45.39 1.73
2206 5959 7.639113 TTCTTTGTGTTCCACAGTTTTCTAT 57.361 32.000 0.00 0.00 45.39 1.98
2207 5960 7.392113 TCTTTCTTTGTGTTCCACAGTTTTCTA 59.608 33.333 0.00 0.00 45.39 2.10
2208 5961 5.975693 TTCTTTGTGTTCCACAGTTTTCT 57.024 34.783 0.00 0.00 45.39 2.52
2209 5962 6.386654 TCTTTCTTTGTGTTCCACAGTTTTC 58.613 36.000 0.00 0.00 45.39 2.29
2210 5963 6.339587 TCTTTCTTTGTGTTCCACAGTTTT 57.660 33.333 0.00 0.00 45.39 2.43
2211 5964 5.975693 TCTTTCTTTGTGTTCCACAGTTT 57.024 34.783 0.00 0.00 45.39 2.66
2212 5965 5.975693 TTCTTTCTTTGTGTTCCACAGTT 57.024 34.783 0.00 0.00 45.39 3.16
2213 5966 5.710099 TCTTTCTTTCTTTGTGTTCCACAGT 59.290 36.000 0.00 0.00 45.39 3.55
2214 5967 6.194796 TCTTTCTTTCTTTGTGTTCCACAG 57.805 37.500 0.00 0.00 45.39 3.66
2215 5968 6.582677 TTCTTTCTTTCTTTGTGTTCCACA 57.417 33.333 0.00 0.00 43.02 4.17
2216 5969 7.883229 TTTTCTTTCTTTCTTTGTGTTCCAC 57.117 32.000 0.00 0.00 34.56 4.02
2217 5970 8.934825 CATTTTTCTTTCTTTCTTTGTGTTCCA 58.065 29.630 0.00 0.00 0.00 3.53
2218 5971 9.150348 TCATTTTTCTTTCTTTCTTTGTGTTCC 57.850 29.630 0.00 0.00 0.00 3.62
2220 5973 9.927668 TCTCATTTTTCTTTCTTTCTTTGTGTT 57.072 25.926 0.00 0.00 0.00 3.32
2221 5974 9.927668 TTCTCATTTTTCTTTCTTTCTTTGTGT 57.072 25.926 0.00 0.00 0.00 3.72
2238 5991 9.500785 TGTGGTTTTTCTTTTCTTTCTCATTTT 57.499 25.926 0.00 0.00 0.00 1.82
2239 5992 9.154847 CTGTGGTTTTTCTTTTCTTTCTCATTT 57.845 29.630 0.00 0.00 0.00 2.32
2240 5993 8.531146 TCTGTGGTTTTTCTTTTCTTTCTCATT 58.469 29.630 0.00 0.00 0.00 2.57
2241 5994 8.066612 TCTGTGGTTTTTCTTTTCTTTCTCAT 57.933 30.769 0.00 0.00 0.00 2.90
2242 5995 7.461182 TCTGTGGTTTTTCTTTTCTTTCTCA 57.539 32.000 0.00 0.00 0.00 3.27
2243 5996 8.757164 TTTCTGTGGTTTTTCTTTTCTTTCTC 57.243 30.769 0.00 0.00 0.00 2.87
2244 5997 9.554395 TTTTTCTGTGGTTTTTCTTTTCTTTCT 57.446 25.926 0.00 0.00 0.00 2.52
2245 5998 9.594038 GTTTTTCTGTGGTTTTTCTTTTCTTTC 57.406 29.630 0.00 0.00 0.00 2.62
2246 5999 9.114952 TGTTTTTCTGTGGTTTTTCTTTTCTTT 57.885 25.926 0.00 0.00 0.00 2.52
2247 6000 8.669946 TGTTTTTCTGTGGTTTTTCTTTTCTT 57.330 26.923 0.00 0.00 0.00 2.52
2248 6001 8.720562 CATGTTTTTCTGTGGTTTTTCTTTTCT 58.279 29.630 0.00 0.00 0.00 2.52
2249 6002 8.716909 TCATGTTTTTCTGTGGTTTTTCTTTTC 58.283 29.630 0.00 0.00 0.00 2.29
2250 6003 8.614469 TCATGTTTTTCTGTGGTTTTTCTTTT 57.386 26.923 0.00 0.00 0.00 2.27
2251 6004 8.614469 TTCATGTTTTTCTGTGGTTTTTCTTT 57.386 26.923 0.00 0.00 0.00 2.52
2252 6005 8.614469 TTTCATGTTTTTCTGTGGTTTTTCTT 57.386 26.923 0.00 0.00 0.00 2.52
2253 6006 8.093927 TCTTTCATGTTTTTCTGTGGTTTTTCT 58.906 29.630 0.00 0.00 0.00 2.52
2254 6007 8.250538 TCTTTCATGTTTTTCTGTGGTTTTTC 57.749 30.769 0.00 0.00 0.00 2.29
2255 6008 8.614469 TTCTTTCATGTTTTTCTGTGGTTTTT 57.386 26.923 0.00 0.00 0.00 1.94
2256 6009 8.614469 TTTCTTTCATGTTTTTCTGTGGTTTT 57.386 26.923 0.00 0.00 0.00 2.43
2257 6010 8.614469 TTTTCTTTCATGTTTTTCTGTGGTTT 57.386 26.923 0.00 0.00 0.00 3.27
2258 6011 8.614469 TTTTTCTTTCATGTTTTTCTGTGGTT 57.386 26.923 0.00 0.00 0.00 3.67
2259 6012 7.877612 ACTTTTTCTTTCATGTTTTTCTGTGGT 59.122 29.630 0.00 0.00 0.00 4.16
2260 6013 8.170553 CACTTTTTCTTTCATGTTTTTCTGTGG 58.829 33.333 0.00 0.00 0.00 4.17
2261 6014 8.924691 TCACTTTTTCTTTCATGTTTTTCTGTG 58.075 29.630 0.00 0.00 0.00 3.66
2262 6015 9.143631 CTCACTTTTTCTTTCATGTTTTTCTGT 57.856 29.630 0.00 0.00 0.00 3.41
2263 6016 9.357652 TCTCACTTTTTCTTTCATGTTTTTCTG 57.642 29.630 0.00 0.00 0.00 3.02
2264 6017 9.927668 TTCTCACTTTTTCTTTCATGTTTTTCT 57.072 25.926 0.00 0.00 0.00 2.52
2268 6021 9.874205 TGATTTCTCACTTTTTCTTTCATGTTT 57.126 25.926 0.00 0.00 0.00 2.83
2269 6022 9.874205 TTGATTTCTCACTTTTTCTTTCATGTT 57.126 25.926 0.00 0.00 0.00 2.71
2270 6023 9.874205 TTTGATTTCTCACTTTTTCTTTCATGT 57.126 25.926 0.00 0.00 0.00 3.21
2309 6062 9.522804 TTTGCTTCATCGTTATACTTTGTTTTT 57.477 25.926 0.00 0.00 0.00 1.94
2310 6063 9.180678 CTTTGCTTCATCGTTATACTTTGTTTT 57.819 29.630 0.00 0.00 0.00 2.43
2311 6064 8.564574 TCTTTGCTTCATCGTTATACTTTGTTT 58.435 29.630 0.00 0.00 0.00 2.83
2312 6065 8.094798 TCTTTGCTTCATCGTTATACTTTGTT 57.905 30.769 0.00 0.00 0.00 2.83
2313 6066 7.667043 TCTTTGCTTCATCGTTATACTTTGT 57.333 32.000 0.00 0.00 0.00 2.83
2314 6067 8.948853 TTTCTTTGCTTCATCGTTATACTTTG 57.051 30.769 0.00 0.00 0.00 2.77
2315 6068 9.959749 TTTTTCTTTGCTTCATCGTTATACTTT 57.040 25.926 0.00 0.00 0.00 2.66
2375 6128 9.424319 GGTTTCTTCTTCTTCTTTTTCTTTTGT 57.576 29.630 0.00 0.00 0.00 2.83
2376 6129 9.423061 TGGTTTCTTCTTCTTCTTTTTCTTTTG 57.577 29.630 0.00 0.00 0.00 2.44
2377 6130 9.996554 TTGGTTTCTTCTTCTTCTTTTTCTTTT 57.003 25.926 0.00 0.00 0.00 2.27
2378 6131 9.996554 TTTGGTTTCTTCTTCTTCTTTTTCTTT 57.003 25.926 0.00 0.00 0.00 2.52
2379 6132 9.424319 GTTTGGTTTCTTCTTCTTCTTTTTCTT 57.576 29.630 0.00 0.00 0.00 2.52
2380 6133 8.585018 TGTTTGGTTTCTTCTTCTTCTTTTTCT 58.415 29.630 0.00 0.00 0.00 2.52
2381 6134 8.757164 TGTTTGGTTTCTTCTTCTTCTTTTTC 57.243 30.769 0.00 0.00 0.00 2.29
2382 6135 9.554395 TTTGTTTGGTTTCTTCTTCTTCTTTTT 57.446 25.926 0.00 0.00 0.00 1.94
2383 6136 8.988934 GTTTGTTTGGTTTCTTCTTCTTCTTTT 58.011 29.630 0.00 0.00 0.00 2.27
2384 6137 8.147704 TGTTTGTTTGGTTTCTTCTTCTTCTTT 58.852 29.630 0.00 0.00 0.00 2.52
2385 6138 7.598869 GTGTTTGTTTGGTTTCTTCTTCTTCTT 59.401 33.333 0.00 0.00 0.00 2.52
2386 6139 7.090808 GTGTTTGTTTGGTTTCTTCTTCTTCT 58.909 34.615 0.00 0.00 0.00 2.85
2387 6140 6.866248 TGTGTTTGTTTGGTTTCTTCTTCTTC 59.134 34.615 0.00 0.00 0.00 2.87
2388 6141 6.754193 TGTGTTTGTTTGGTTTCTTCTTCTT 58.246 32.000 0.00 0.00 0.00 2.52
2389 6142 6.339587 TGTGTTTGTTTGGTTTCTTCTTCT 57.660 33.333 0.00 0.00 0.00 2.85
2390 6143 7.009540 CAGATGTGTTTGTTTGGTTTCTTCTTC 59.990 37.037 0.00 0.00 0.00 2.87
2391 6144 6.813152 CAGATGTGTTTGTTTGGTTTCTTCTT 59.187 34.615 0.00 0.00 0.00 2.52
2392 6145 6.332630 CAGATGTGTTTGTTTGGTTTCTTCT 58.667 36.000 0.00 0.00 0.00 2.85
2393 6146 5.519927 CCAGATGTGTTTGTTTGGTTTCTTC 59.480 40.000 0.00 0.00 0.00 2.87
2394 6147 5.418676 CCAGATGTGTTTGTTTGGTTTCTT 58.581 37.500 0.00 0.00 0.00 2.52
2395 6148 4.141959 CCCAGATGTGTTTGTTTGGTTTCT 60.142 41.667 0.00 0.00 0.00 2.52
2396 6149 4.119136 CCCAGATGTGTTTGTTTGGTTTC 58.881 43.478 0.00 0.00 0.00 2.78
2397 6150 3.772025 TCCCAGATGTGTTTGTTTGGTTT 59.228 39.130 0.00 0.00 0.00 3.27
2398 6151 3.370104 TCCCAGATGTGTTTGTTTGGTT 58.630 40.909 0.00 0.00 0.00 3.67
2399 6152 3.025322 TCCCAGATGTGTTTGTTTGGT 57.975 42.857 0.00 0.00 0.00 3.67
2400 6153 4.039004 TCATTCCCAGATGTGTTTGTTTGG 59.961 41.667 0.00 0.00 0.00 3.28
2401 6154 5.199024 TCATTCCCAGATGTGTTTGTTTG 57.801 39.130 0.00 0.00 0.00 2.93
2402 6155 5.867903 TTCATTCCCAGATGTGTTTGTTT 57.132 34.783 0.00 0.00 0.00 2.83
2403 6156 5.598005 TCTTTCATTCCCAGATGTGTTTGTT 59.402 36.000 0.00 0.00 0.00 2.83
2404 6157 5.139727 TCTTTCATTCCCAGATGTGTTTGT 58.860 37.500 0.00 0.00 0.00 2.83
2405 6158 5.242393 ACTCTTTCATTCCCAGATGTGTTTG 59.758 40.000 0.00 0.00 0.00 2.93
2406 6159 5.242393 CACTCTTTCATTCCCAGATGTGTTT 59.758 40.000 0.00 0.00 0.00 2.83
2407 6160 4.763793 CACTCTTTCATTCCCAGATGTGTT 59.236 41.667 0.00 0.00 0.00 3.32
2408 6161 4.330250 CACTCTTTCATTCCCAGATGTGT 58.670 43.478 0.00 0.00 0.00 3.72
2409 6162 3.693085 CCACTCTTTCATTCCCAGATGTG 59.307 47.826 0.00 0.00 0.00 3.21
2410 6163 3.331889 ACCACTCTTTCATTCCCAGATGT 59.668 43.478 0.00 0.00 0.00 3.06
2411 6164 3.944015 GACCACTCTTTCATTCCCAGATG 59.056 47.826 0.00 0.00 0.00 2.90
2412 6165 3.054065 GGACCACTCTTTCATTCCCAGAT 60.054 47.826 0.00 0.00 0.00 2.90
2413 6166 2.305927 GGACCACTCTTTCATTCCCAGA 59.694 50.000 0.00 0.00 0.00 3.86
2414 6167 2.307098 AGGACCACTCTTTCATTCCCAG 59.693 50.000 0.00 0.00 0.00 4.45
2415 6168 2.305927 GAGGACCACTCTTTCATTCCCA 59.694 50.000 0.00 0.00 43.14 4.37
2416 6169 2.992593 GAGGACCACTCTTTCATTCCC 58.007 52.381 0.00 0.00 43.14 3.97
2426 6179 1.139853 CAGCCCAATAGAGGACCACTC 59.860 57.143 0.00 0.00 46.98 3.51
2427 6180 1.207791 CAGCCCAATAGAGGACCACT 58.792 55.000 0.00 0.00 0.00 4.00
2428 6181 0.181350 CCAGCCCAATAGAGGACCAC 59.819 60.000 0.00 0.00 0.00 4.16
2429 6182 1.635817 GCCAGCCCAATAGAGGACCA 61.636 60.000 0.00 0.00 0.00 4.02
2430 6183 1.149401 GCCAGCCCAATAGAGGACC 59.851 63.158 0.00 0.00 0.00 4.46
2431 6184 1.149401 GGCCAGCCCAATAGAGGAC 59.851 63.158 0.00 0.00 0.00 3.85
2432 6185 3.660724 GGCCAGCCCAATAGAGGA 58.339 61.111 0.00 0.00 0.00 3.71
2442 6195 3.451894 CACGGAAATGGGCCAGCC 61.452 66.667 13.78 12.50 0.00 4.85
2443 6196 2.361104 TCACGGAAATGGGCCAGC 60.361 61.111 13.78 3.59 0.00 4.85
2444 6197 1.002134 ACTCACGGAAATGGGCCAG 60.002 57.895 13.78 0.00 0.00 4.85
2445 6198 1.303236 CACTCACGGAAATGGGCCA 60.303 57.895 9.61 9.61 0.00 5.36
2446 6199 2.700773 GCACTCACGGAAATGGGCC 61.701 63.158 0.00 0.00 0.00 5.80
2447 6200 1.675641 AGCACTCACGGAAATGGGC 60.676 57.895 0.00 0.00 0.00 5.36
2448 6201 1.926511 GCAGCACTCACGGAAATGGG 61.927 60.000 0.00 0.00 0.00 4.00
2449 6202 1.236616 TGCAGCACTCACGGAAATGG 61.237 55.000 0.00 0.00 0.00 3.16
2450 6203 0.592637 TTGCAGCACTCACGGAAATG 59.407 50.000 0.00 0.00 0.00 2.32
2451 6204 0.877071 CTTGCAGCACTCACGGAAAT 59.123 50.000 0.00 0.00 0.00 2.17
2452 6205 0.179059 TCTTGCAGCACTCACGGAAA 60.179 50.000 0.00 0.00 0.00 3.13
2453 6206 0.179059 TTCTTGCAGCACTCACGGAA 60.179 50.000 0.00 0.00 0.00 4.30
2454 6207 0.179059 TTTCTTGCAGCACTCACGGA 60.179 50.000 0.00 0.00 0.00 4.69
2455 6208 0.236711 CTTTCTTGCAGCACTCACGG 59.763 55.000 0.00 0.00 0.00 4.94
2456 6209 0.385223 GCTTTCTTGCAGCACTCACG 60.385 55.000 0.00 0.00 37.22 4.35
2457 6210 0.950116 AGCTTTCTTGCAGCACTCAC 59.050 50.000 0.00 0.00 39.99 3.51
2458 6211 1.605710 GAAGCTTTCTTGCAGCACTCA 59.394 47.619 0.00 0.00 39.99 3.41
2459 6212 1.605710 TGAAGCTTTCTTGCAGCACTC 59.394 47.619 0.00 0.00 39.99 3.51
2460 6213 1.607628 CTGAAGCTTTCTTGCAGCACT 59.392 47.619 0.00 0.00 39.99 4.40
2461 6214 1.335689 CCTGAAGCTTTCTTGCAGCAC 60.336 52.381 0.00 0.00 39.99 4.40
2462 6215 0.956633 CCTGAAGCTTTCTTGCAGCA 59.043 50.000 0.00 0.00 39.99 4.41
2463 6216 0.388263 GCCTGAAGCTTTCTTGCAGC 60.388 55.000 0.00 0.00 38.99 5.25
2464 6217 0.956633 TGCCTGAAGCTTTCTTGCAG 59.043 50.000 0.00 2.51 44.23 4.41
2465 6218 1.338973 CTTGCCTGAAGCTTTCTTGCA 59.661 47.619 0.00 5.10 44.23 4.08
2466 6219 1.610522 TCTTGCCTGAAGCTTTCTTGC 59.389 47.619 0.00 2.26 44.23 4.01
2467 6220 2.350197 CGTCTTGCCTGAAGCTTTCTTG 60.350 50.000 0.00 0.00 44.23 3.02
2468 6221 1.876156 CGTCTTGCCTGAAGCTTTCTT 59.124 47.619 0.00 0.00 44.23 2.52
2469 6222 1.517242 CGTCTTGCCTGAAGCTTTCT 58.483 50.000 0.00 0.00 44.23 2.52
2470 6223 0.519077 CCGTCTTGCCTGAAGCTTTC 59.481 55.000 0.00 0.00 44.23 2.62
2471 6224 0.179018 ACCGTCTTGCCTGAAGCTTT 60.179 50.000 0.00 0.00 44.23 3.51
2472 6225 0.179018 AACCGTCTTGCCTGAAGCTT 60.179 50.000 0.00 0.00 44.23 3.74
2473 6226 0.886490 CAACCGTCTTGCCTGAAGCT 60.886 55.000 0.00 0.00 44.23 3.74
2474 6227 1.576421 CAACCGTCTTGCCTGAAGC 59.424 57.895 0.00 0.00 44.14 3.86
2475 6228 0.886490 AGCAACCGTCTTGCCTGAAG 60.886 55.000 10.57 0.00 45.98 3.02
2476 6229 0.394938 TAGCAACCGTCTTGCCTGAA 59.605 50.000 10.57 0.00 45.98 3.02
2477 6230 0.037326 CTAGCAACCGTCTTGCCTGA 60.037 55.000 10.57 0.00 45.98 3.86
2478 6231 0.320771 ACTAGCAACCGTCTTGCCTG 60.321 55.000 10.57 7.18 45.98 4.85
2479 6232 0.037232 GACTAGCAACCGTCTTGCCT 60.037 55.000 10.57 3.07 45.98 4.75
2480 6233 0.037232 AGACTAGCAACCGTCTTGCC 60.037 55.000 10.57 0.00 45.98 4.52
2481 6234 1.351153 GAGACTAGCAACCGTCTTGC 58.649 55.000 6.90 6.90 40.37 4.01
2482 6235 1.618861 CGAGACTAGCAACCGTCTTG 58.381 55.000 0.00 0.00 40.37 3.02
2483 6236 0.109226 GCGAGACTAGCAACCGTCTT 60.109 55.000 2.30 0.00 40.37 3.01
2484 6237 0.961358 AGCGAGACTAGCAACCGTCT 60.961 55.000 10.35 0.00 42.79 4.18
2485 6238 0.731417 TAGCGAGACTAGCAACCGTC 59.269 55.000 10.35 0.00 37.01 4.79
2486 6239 1.390565 ATAGCGAGACTAGCAACCGT 58.609 50.000 10.35 0.00 37.01 4.83
2487 6240 3.298317 GTTATAGCGAGACTAGCAACCG 58.702 50.000 10.35 0.00 37.01 4.44
2488 6241 3.640592 GGTTATAGCGAGACTAGCAACC 58.359 50.000 10.35 10.69 40.21 3.77
2489 6242 3.003068 TCGGTTATAGCGAGACTAGCAAC 59.997 47.826 10.35 5.65 43.66 4.17
2490 6243 3.208594 TCGGTTATAGCGAGACTAGCAA 58.791 45.455 10.35 0.00 43.66 3.91
2491 6244 2.842457 TCGGTTATAGCGAGACTAGCA 58.158 47.619 10.35 0.00 43.66 3.49
2499 6252 5.700722 ATGTTATGTCTCGGTTATAGCGA 57.299 39.130 0.90 0.90 46.53 4.93
2500 6253 5.059343 CGAATGTTATGTCTCGGTTATAGCG 59.941 44.000 0.00 0.00 40.97 4.26
2501 6254 5.164080 GCGAATGTTATGTCTCGGTTATAGC 60.164 44.000 0.00 0.00 0.00 2.97
2502 6255 6.150318 AGCGAATGTTATGTCTCGGTTATAG 58.850 40.000 0.00 0.00 38.76 1.31
2503 6256 6.080648 AGCGAATGTTATGTCTCGGTTATA 57.919 37.500 0.00 0.00 38.76 0.98
2504 6257 4.945246 AGCGAATGTTATGTCTCGGTTAT 58.055 39.130 0.00 0.00 38.76 1.89
2505 6258 4.380841 AGCGAATGTTATGTCTCGGTTA 57.619 40.909 0.00 0.00 38.76 2.85
2506 6259 3.247006 AGCGAATGTTATGTCTCGGTT 57.753 42.857 0.00 0.00 38.76 4.44
2507 6260 2.961526 AGCGAATGTTATGTCTCGGT 57.038 45.000 0.00 0.00 37.21 4.69
2508 6261 3.731216 CACTAGCGAATGTTATGTCTCGG 59.269 47.826 0.00 0.00 0.00 4.63
2509 6262 3.180584 GCACTAGCGAATGTTATGTCTCG 59.819 47.826 0.00 0.00 0.00 4.04
2510 6263 4.700596 GCACTAGCGAATGTTATGTCTC 57.299 45.455 0.00 0.00 0.00 3.36
2524 6277 3.748568 ACTAAGCAAGACAAAGCACTAGC 59.251 43.478 0.00 0.00 42.56 3.42
2525 6278 4.377841 GCACTAAGCAAGACAAAGCACTAG 60.378 45.833 0.00 0.00 44.79 2.57
2526 6279 3.498397 GCACTAAGCAAGACAAAGCACTA 59.502 43.478 0.00 0.00 44.79 2.74
2527 6280 2.291741 GCACTAAGCAAGACAAAGCACT 59.708 45.455 0.00 0.00 44.79 4.40
2528 6281 2.654987 GCACTAAGCAAGACAAAGCAC 58.345 47.619 0.00 0.00 44.79 4.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.