Multiple sequence alignment - TraesCS5B01G537200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G537200 chr5B 100.000 6652 0 0 1 6652 693178193 693184844 0.000000e+00 12285.0
1 TraesCS5B01G537200 chr5B 92.466 146 6 2 920 1063 693151591 693151733 3.140000e-48 204.0
2 TraesCS5B01G537200 chr5B 90.000 100 3 6 783 881 693151498 693151591 9.060000e-24 122.0
3 TraesCS5B01G537200 chr5B 90.909 77 5 2 671 746 660845150 660845075 1.180000e-17 102.0
4 TraesCS5B01G537200 chr5D 91.016 1536 68 24 783 2293 558967137 558968627 0.000000e+00 2008.0
5 TraesCS5B01G537200 chr5D 88.159 1309 80 25 3803 5054 558970637 558971927 0.000000e+00 1489.0
6 TraesCS5B01G537200 chr5D 90.236 932 60 19 5256 6172 558972140 558973055 0.000000e+00 1188.0
7 TraesCS5B01G537200 chr5D 83.762 505 37 11 2556 3047 558968844 558969316 2.850000e-118 436.0
8 TraesCS5B01G537200 chr5D 85.315 286 39 2 2300 2583 558969630 558969914 6.520000e-75 292.0
9 TraesCS5B01G537200 chr5D 79.839 372 19 18 6225 6570 558973059 558973400 3.120000e-53 220.0
10 TraesCS5B01G537200 chr5D 93.103 145 10 0 3258 3402 558969503 558969647 5.230000e-51 213.0
11 TraesCS5B01G537200 chr5D 80.786 229 30 7 3395 3610 558969678 558969905 4.130000e-37 167.0
12 TraesCS5B01G537200 chr5D 89.247 93 5 2 2181 2273 558969431 558969518 1.960000e-20 111.0
13 TraesCS5B01G537200 chr5D 81.818 88 7 1 3042 3120 558969345 558969432 1.550000e-06 65.8
14 TraesCS5B01G537200 chr5D 96.970 33 1 0 6618 6650 558973419 558973451 1.000000e-03 56.5
15 TraesCS5B01G537200 chr4A 88.619 1564 79 41 774 2293 612072563 612074071 0.000000e+00 1810.0
16 TraesCS5B01G537200 chr4A 91.763 777 42 15 5239 6004 612077688 612078453 0.000000e+00 1061.0
17 TraesCS5B01G537200 chr4A 93.884 654 35 5 1 654 734908154 734907506 0.000000e+00 981.0
18 TraesCS5B01G537200 chr4A 82.673 606 65 18 5765 6352 106914529 106913946 9.960000e-138 501.0
19 TraesCS5B01G537200 chr4A 84.015 538 54 16 4541 5054 612076957 612077486 7.750000e-134 488.0
20 TraesCS5B01G537200 chr4A 83.469 490 49 20 6033 6507 612078453 612078925 1.710000e-115 427.0
21 TraesCS5B01G537200 chr4A 79.615 623 68 32 2587 3167 612074325 612074930 6.250000e-105 392.0
22 TraesCS5B01G537200 chr4A 81.211 479 47 22 2783 3224 284946716 284947188 4.940000e-91 346.0
23 TraesCS5B01G537200 chr4A 78.924 446 33 25 1845 2289 284945882 284946267 5.150000e-61 246.0
24 TraesCS5B01G537200 chr4A 86.449 214 14 4 2300 2505 612075165 612075371 3.120000e-53 220.0
25 TraesCS5B01G537200 chr4A 86.979 192 13 8 6462 6650 612078913 612079095 8.740000e-49 206.0
26 TraesCS5B01G537200 chr4A 87.578 161 10 3 2133 2293 284947157 284947307 1.910000e-40 178.0
27 TraesCS5B01G537200 chr4A 91.566 83 6 1 671 752 585063319 585063401 5.450000e-21 113.0
28 TraesCS5B01G537200 chr4A 89.412 85 6 3 671 752 585079465 585079549 3.280000e-18 104.0
29 TraesCS5B01G537200 chr4A 91.304 46 3 1 3288 3333 612074055 612074099 2.000000e-05 62.1
30 TraesCS5B01G537200 chr3D 86.878 1608 101 49 5085 6650 467320252 467321791 0.000000e+00 1700.0
31 TraesCS5B01G537200 chr2B 96.794 655 19 2 1 654 714482969 714483622 0.000000e+00 1092.0
32 TraesCS5B01G537200 chr2B 88.535 157 2 6 6405 6561 15260980 15261120 6.860000e-40 176.0
33 TraesCS5B01G537200 chr3B 89.024 656 68 4 1 656 819314647 819313996 0.000000e+00 809.0
34 TraesCS5B01G537200 chr3B 89.610 77 6 2 671 746 8535063 8535138 5.490000e-16 97.1
35 TraesCS5B01G537200 chr4D 84.627 657 80 14 1 656 57055369 57054733 9.410000e-178 634.0
36 TraesCS5B01G537200 chr5A 83.359 655 87 16 1 654 8054625 8055258 2.670000e-163 586.0
37 TraesCS5B01G537200 chr7A 82.801 657 93 16 1 657 80362861 80362225 2.690000e-158 569.0
38 TraesCS5B01G537200 chr7A 100.000 28 0 0 1653 1680 22963673 22963646 1.200000e-02 52.8
39 TraesCS5B01G537200 chr7B 93.793 145 9 0 3258 3402 724640366 724640222 1.120000e-52 219.0
40 TraesCS5B01G537200 chr7B 82.707 266 21 14 6308 6561 5198 5450 5.230000e-51 213.0
41 TraesCS5B01G537200 chr7B 93.103 145 10 0 3258 3402 724600131 724599987 5.230000e-51 213.0
42 TraesCS5B01G537200 chr7B 81.683 202 21 5 3042 3227 724600413 724600212 3.210000e-33 154.0
43 TraesCS5B01G537200 chr7B 86.111 144 10 3 2133 2276 724690731 724690598 5.380000e-31 147.0
44 TraesCS5B01G537200 chr7B 80.693 202 23 4 3042 3227 724690898 724690697 6.950000e-30 143.0
45 TraesCS5B01G537200 chr7B 85.315 143 14 3 3092 3227 724640589 724640447 2.500000e-29 141.0
46 TraesCS5B01G537200 chr7B 82.286 175 15 6 2102 2276 724600271 724600113 3.240000e-28 137.0
47 TraesCS5B01G537200 chr7B 84.028 144 13 3 2133 2276 724640481 724640348 5.410000e-26 130.0
48 TraesCS5B01G537200 chr4B 83.083 266 17 15 6308 6561 639058712 639058463 4.040000e-52 217.0
49 TraesCS5B01G537200 chr4B 85.981 214 8 11 6348 6561 154407313 154407122 6.760000e-50 209.0
50 TraesCS5B01G537200 chr4B 87.898 157 4 6 6405 6561 196401091 196401232 3.190000e-38 171.0
51 TraesCS5B01G537200 chr6B 82.528 269 17 12 6308 6561 673068804 673068551 6.760000e-50 209.0
52 TraesCS5B01G537200 chr6B 81.955 266 17 18 6308 6561 663040564 663040810 5.260000e-46 196.0
53 TraesCS5B01G537200 chr1A 96.053 76 1 2 671 745 201542740 201542814 9.060000e-24 122.0
54 TraesCS5B01G537200 chr7D 100.000 29 0 0 1660 1688 45011827 45011855 3.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G537200 chr5B 693178193 693184844 6651 False 12285.000000 12285 100.000000 1 6652 1 chr5B.!!$F1 6651
1 TraesCS5B01G537200 chr5D 558967137 558973451 6314 False 567.845455 2008 87.295545 783 6650 11 chr5D.!!$F1 5867
2 TraesCS5B01G537200 chr4A 734907506 734908154 648 True 981.000000 981 93.884000 1 654 1 chr4A.!!$R2 653
3 TraesCS5B01G537200 chr4A 612072563 612079095 6532 False 583.262500 1810 86.526625 774 6650 8 chr4A.!!$F4 5876
4 TraesCS5B01G537200 chr4A 106913946 106914529 583 True 501.000000 501 82.673000 5765 6352 1 chr4A.!!$R1 587
5 TraesCS5B01G537200 chr4A 284945882 284947307 1425 False 256.666667 346 82.571000 1845 3224 3 chr4A.!!$F3 1379
6 TraesCS5B01G537200 chr3D 467320252 467321791 1539 False 1700.000000 1700 86.878000 5085 6650 1 chr3D.!!$F1 1565
7 TraesCS5B01G537200 chr2B 714482969 714483622 653 False 1092.000000 1092 96.794000 1 654 1 chr2B.!!$F2 653
8 TraesCS5B01G537200 chr3B 819313996 819314647 651 True 809.000000 809 89.024000 1 656 1 chr3B.!!$R1 655
9 TraesCS5B01G537200 chr4D 57054733 57055369 636 True 634.000000 634 84.627000 1 656 1 chr4D.!!$R1 655
10 TraesCS5B01G537200 chr5A 8054625 8055258 633 False 586.000000 586 83.359000 1 654 1 chr5A.!!$F1 653
11 TraesCS5B01G537200 chr7A 80362225 80362861 636 True 569.000000 569 82.801000 1 657 1 chr7A.!!$R2 656

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
771 773 0.099259 CCGTCGCCGTGTGAATAGTA 59.901 55.0 0.00 0.0 0.0 1.82 F
2341 2459 0.104855 TCATCATACGGCTGCTGACC 59.895 55.0 16.72 0.0 0.0 4.02 F
2493 2619 0.038892 CCAATGCCACACAGCTGTTC 60.039 55.0 18.94 7.4 0.0 3.18 F
2770 2975 0.106918 TTTTGAACCCACTCTGCCGT 60.107 50.0 0.00 0.0 0.0 5.68 F
4495 5830 0.036105 AGCTCGTGCCATTGATGACA 60.036 50.0 5.73 0.0 40.8 3.58 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2389 2507 0.040058 ATGGCATTGTGCTGAGGGAA 59.960 50.0 0.00 0.0 44.28 3.97 R
4002 5294 0.478942 CATAGGGAGGGAGAGGTCGA 59.521 60.0 0.00 0.0 0.00 4.20 R
4003 5295 1.182385 GCATAGGGAGGGAGAGGTCG 61.182 65.0 0.00 0.0 0.00 4.79 R
4594 5929 0.955428 TTCATGTCCTGCAAGACGCC 60.955 55.0 10.77 0.0 41.33 5.68 R
6201 7657 0.032403 GCACTGCAATGTGGCTCAAA 59.968 50.0 8.06 0.0 38.31 2.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 40 1.612950 CCTTGCACAAACTGGTATGCA 59.387 47.619 0.75 0.75 45.94 3.96
95 96 3.865446 TCGTACTCTTCGATCACCACTA 58.135 45.455 0.00 0.00 32.30 2.74
176 177 5.851177 CACATGAACTGAACAATAAACCGAC 59.149 40.000 0.00 0.00 0.00 4.79
357 358 2.624029 CCAGCTCTTCTTCCTCCTCTCT 60.624 54.545 0.00 0.00 0.00 3.10
514 515 2.292794 GATCGCCTCCTACCAACGCA 62.293 60.000 0.00 0.00 0.00 5.24
675 677 8.723942 AAAAACTCTATGGTGAGATGTGTATC 57.276 34.615 0.00 0.00 37.50 2.24
676 678 7.423844 AAACTCTATGGTGAGATGTGTATCA 57.576 36.000 0.00 0.00 37.50 2.15
677 679 6.398234 ACTCTATGGTGAGATGTGTATCAC 57.602 41.667 0.00 0.00 43.99 3.06
678 680 6.132658 ACTCTATGGTGAGATGTGTATCACT 58.867 40.000 5.42 0.00 44.13 3.41
679 681 6.040278 ACTCTATGGTGAGATGTGTATCACTG 59.960 42.308 5.42 0.00 44.13 3.66
680 682 5.893824 TCTATGGTGAGATGTGTATCACTGT 59.106 40.000 5.42 0.00 44.13 3.55
681 683 4.890158 TGGTGAGATGTGTATCACTGTT 57.110 40.909 5.42 0.00 44.13 3.16
682 684 4.568956 TGGTGAGATGTGTATCACTGTTG 58.431 43.478 5.42 0.00 44.13 3.33
683 685 4.040339 TGGTGAGATGTGTATCACTGTTGT 59.960 41.667 5.42 0.00 44.13 3.32
684 686 5.245075 TGGTGAGATGTGTATCACTGTTGTA 59.755 40.000 5.42 0.00 44.13 2.41
685 687 5.577164 GGTGAGATGTGTATCACTGTTGTAC 59.423 44.000 5.42 0.00 44.13 2.90
686 688 6.156519 GTGAGATGTGTATCACTGTTGTACA 58.843 40.000 0.00 0.00 42.02 2.90
687 689 6.645003 GTGAGATGTGTATCACTGTTGTACAA 59.355 38.462 3.59 3.59 42.02 2.41
688 690 7.331934 GTGAGATGTGTATCACTGTTGTACAAT 59.668 37.037 12.26 0.00 42.02 2.71
689 691 7.331687 TGAGATGTGTATCACTGTTGTACAATG 59.668 37.037 12.26 10.41 35.70 2.82
690 692 7.161404 AGATGTGTATCACTGTTGTACAATGT 58.839 34.615 12.26 11.04 35.70 2.71
691 693 6.779115 TGTGTATCACTGTTGTACAATGTC 57.221 37.500 12.26 0.00 35.11 3.06
692 694 6.521162 TGTGTATCACTGTTGTACAATGTCT 58.479 36.000 12.26 6.57 35.11 3.41
693 695 7.662897 TGTGTATCACTGTTGTACAATGTCTA 58.337 34.615 12.26 5.41 35.11 2.59
694 696 8.311109 TGTGTATCACTGTTGTACAATGTCTAT 58.689 33.333 12.26 11.28 35.11 1.98
695 697 8.595533 GTGTATCACTGTTGTACAATGTCTATG 58.404 37.037 12.26 5.42 30.87 2.23
696 698 8.527810 TGTATCACTGTTGTACAATGTCTATGA 58.472 33.333 12.26 10.24 0.00 2.15
697 699 9.025020 GTATCACTGTTGTACAATGTCTATGAG 57.975 37.037 12.26 2.21 0.00 2.90
698 700 7.227049 TCACTGTTGTACAATGTCTATGAGA 57.773 36.000 12.26 4.32 0.00 3.27
699 701 7.840931 TCACTGTTGTACAATGTCTATGAGAT 58.159 34.615 12.26 0.00 0.00 2.75
700 702 7.761249 TCACTGTTGTACAATGTCTATGAGATG 59.239 37.037 12.26 0.40 0.00 2.90
701 703 7.761249 CACTGTTGTACAATGTCTATGAGATGA 59.239 37.037 12.26 0.00 0.00 2.92
702 704 8.314021 ACTGTTGTACAATGTCTATGAGATGAA 58.686 33.333 12.26 0.00 0.00 2.57
703 705 9.322773 CTGTTGTACAATGTCTATGAGATGAAT 57.677 33.333 12.26 0.00 0.00 2.57
704 706 9.101655 TGTTGTACAATGTCTATGAGATGAATG 57.898 33.333 12.26 0.00 0.00 2.67
705 707 8.554528 GTTGTACAATGTCTATGAGATGAATGG 58.445 37.037 12.26 0.00 0.00 3.16
706 708 8.021898 TGTACAATGTCTATGAGATGAATGGA 57.978 34.615 0.00 0.00 0.00 3.41
707 709 8.485392 TGTACAATGTCTATGAGATGAATGGAA 58.515 33.333 0.00 0.00 0.00 3.53
708 710 9.499479 GTACAATGTCTATGAGATGAATGGAAT 57.501 33.333 0.00 0.00 0.00 3.01
713 715 9.682465 ATGTCTATGAGATGAATGGAATATTGG 57.318 33.333 0.00 0.00 0.00 3.16
714 716 7.609146 TGTCTATGAGATGAATGGAATATTGGC 59.391 37.037 0.00 0.00 0.00 4.52
715 717 5.892160 ATGAGATGAATGGAATATTGGCG 57.108 39.130 0.00 0.00 0.00 5.69
716 718 3.503363 TGAGATGAATGGAATATTGGCGC 59.497 43.478 0.00 0.00 0.00 6.53
717 719 2.821969 AGATGAATGGAATATTGGCGCC 59.178 45.455 22.73 22.73 0.00 6.53
718 720 2.363306 TGAATGGAATATTGGCGCCT 57.637 45.000 29.70 11.31 0.00 5.52
719 721 2.229792 TGAATGGAATATTGGCGCCTC 58.770 47.619 29.70 16.37 0.00 4.70
720 722 2.158623 TGAATGGAATATTGGCGCCTCT 60.159 45.455 29.70 17.17 0.00 3.69
721 723 1.901591 ATGGAATATTGGCGCCTCTG 58.098 50.000 29.70 0.00 0.00 3.35
722 724 0.179020 TGGAATATTGGCGCCTCTGG 60.179 55.000 29.70 0.00 0.00 3.86
723 725 0.179018 GGAATATTGGCGCCTCTGGT 60.179 55.000 29.70 10.32 0.00 4.00
724 726 0.947244 GAATATTGGCGCCTCTGGTG 59.053 55.000 29.70 0.00 36.10 4.17
732 734 3.334054 GCCTCTGGTGCCCCTCTT 61.334 66.667 0.00 0.00 0.00 2.85
733 735 2.911926 GCCTCTGGTGCCCCTCTTT 61.912 63.158 0.00 0.00 0.00 2.52
734 736 1.001641 CCTCTGGTGCCCCTCTTTG 60.002 63.158 0.00 0.00 0.00 2.77
735 737 1.763770 CTCTGGTGCCCCTCTTTGT 59.236 57.895 0.00 0.00 0.00 2.83
736 738 0.111253 CTCTGGTGCCCCTCTTTGTT 59.889 55.000 0.00 0.00 0.00 2.83
737 739 0.110486 TCTGGTGCCCCTCTTTGTTC 59.890 55.000 0.00 0.00 0.00 3.18
738 740 0.178992 CTGGTGCCCCTCTTTGTTCA 60.179 55.000 0.00 0.00 0.00 3.18
739 741 0.260230 TGGTGCCCCTCTTTGTTCAA 59.740 50.000 0.00 0.00 0.00 2.69
740 742 1.342474 TGGTGCCCCTCTTTGTTCAAA 60.342 47.619 0.00 0.00 0.00 2.69
741 743 1.760029 GGTGCCCCTCTTTGTTCAAAA 59.240 47.619 0.00 0.00 0.00 2.44
742 744 2.169561 GGTGCCCCTCTTTGTTCAAAAA 59.830 45.455 0.00 0.00 0.00 1.94
764 766 2.710698 AAAAACCGTCGCCGTGTG 59.289 55.556 0.00 0.00 0.00 3.82
765 767 1.814586 AAAAACCGTCGCCGTGTGA 60.815 52.632 0.00 0.00 0.00 3.58
766 768 1.367599 AAAAACCGTCGCCGTGTGAA 61.368 50.000 0.00 0.00 0.00 3.18
767 769 1.161563 AAAACCGTCGCCGTGTGAAT 61.162 50.000 0.00 0.00 0.00 2.57
768 770 0.319727 AAACCGTCGCCGTGTGAATA 60.320 50.000 0.00 0.00 0.00 1.75
769 771 0.734942 AACCGTCGCCGTGTGAATAG 60.735 55.000 0.00 0.00 0.00 1.73
770 772 1.153901 CCGTCGCCGTGTGAATAGT 60.154 57.895 0.00 0.00 0.00 2.12
771 773 0.099259 CCGTCGCCGTGTGAATAGTA 59.901 55.000 0.00 0.00 0.00 1.82
772 774 1.463805 CGTCGCCGTGTGAATAGTAG 58.536 55.000 0.00 0.00 0.00 2.57
778 780 2.019249 CCGTGTGAATAGTAGGACCGA 58.981 52.381 0.00 0.00 0.00 4.69
780 782 2.223433 CGTGTGAATAGTAGGACCGACC 60.223 54.545 0.46 0.00 39.35 4.79
882 890 1.334556 CCCACACACACAATCACACAG 59.665 52.381 0.00 0.00 0.00 3.66
883 891 2.287769 CCACACACACAATCACACAGA 58.712 47.619 0.00 0.00 0.00 3.41
884 892 2.880268 CCACACACACAATCACACAGAT 59.120 45.455 0.00 0.00 39.09 2.90
932 950 2.187958 CTATCTCCTTCCACCCACACA 58.812 52.381 0.00 0.00 0.00 3.72
933 951 0.987294 ATCTCCTTCCACCCACACAG 59.013 55.000 0.00 0.00 0.00 3.66
934 952 0.399949 TCTCCTTCCACCCACACAGT 60.400 55.000 0.00 0.00 0.00 3.55
935 953 0.250467 CTCCTTCCACCCACACAGTG 60.250 60.000 0.00 0.00 34.91 3.66
964 988 3.141488 CCACTCCTCTCCGACCCG 61.141 72.222 0.00 0.00 0.00 5.28
1662 1704 2.380941 GACTTCTACACCTCCTCCTCC 58.619 57.143 0.00 0.00 0.00 4.30
1665 1707 0.547075 TCTACACCTCCTCCTCCTCG 59.453 60.000 0.00 0.00 0.00 4.63
1713 1755 4.193334 TGGATGGACTCGCGCTCG 62.193 66.667 5.56 0.00 0.00 5.03
1730 1772 0.766131 TCGAAAGGGTGGCAGGTAAA 59.234 50.000 0.00 0.00 0.00 2.01
1753 1795 3.491964 CCGACAAAAAGTTCCCCCTTTTC 60.492 47.826 0.00 0.00 42.32 2.29
1754 1796 3.713288 GACAAAAAGTTCCCCCTTTTCG 58.287 45.455 0.00 0.00 42.32 3.46
1758 1800 2.014033 AAGTTCCCCCTTTTCGCCCA 62.014 55.000 0.00 0.00 0.00 5.36
1759 1801 1.304962 GTTCCCCCTTTTCGCCCAT 60.305 57.895 0.00 0.00 0.00 4.00
1760 1802 1.304879 TTCCCCCTTTTCGCCCATG 60.305 57.895 0.00 0.00 0.00 3.66
1816 1866 3.876914 TGCGTGTCTTCTTCAGTTGATTT 59.123 39.130 0.00 0.00 0.00 2.17
1831 1881 6.984474 TCAGTTGATTTAACTCTGAAGAACGT 59.016 34.615 0.00 0.00 46.55 3.99
1832 1882 8.139350 TCAGTTGATTTAACTCTGAAGAACGTA 58.861 33.333 0.00 0.00 46.55 3.57
1833 1883 8.761497 CAGTTGATTTAACTCTGAAGAACGTAA 58.239 33.333 0.00 0.00 46.55 3.18
1834 1884 9.321562 AGTTGATTTAACTCTGAAGAACGTAAA 57.678 29.630 0.00 0.00 46.55 2.01
1901 1951 5.030295 CGGTGCTGCTTTTAAACATCATAG 58.970 41.667 0.00 0.00 0.00 2.23
1950 2003 9.975218 ACATTATCCTGGTAGAAATTTGTAGTT 57.025 29.630 0.00 0.00 0.00 2.24
1952 2005 9.975218 ATTATCCTGGTAGAAATTTGTAGTTGT 57.025 29.630 0.00 0.00 0.00 3.32
1953 2006 7.687941 ATCCTGGTAGAAATTTGTAGTTGTG 57.312 36.000 0.00 0.00 0.00 3.33
1997 2050 0.392461 TTTGCCCGTGCTCCTATCAC 60.392 55.000 0.00 0.00 38.71 3.06
2004 2057 2.688446 CCGTGCTCCTATCACTTCTGTA 59.312 50.000 0.00 0.00 32.54 2.74
2005 2058 3.130516 CCGTGCTCCTATCACTTCTGTAA 59.869 47.826 0.00 0.00 32.54 2.41
2006 2059 4.106197 CGTGCTCCTATCACTTCTGTAAC 58.894 47.826 0.00 0.00 32.54 2.50
2007 2060 4.380550 CGTGCTCCTATCACTTCTGTAACA 60.381 45.833 0.00 0.00 32.54 2.41
2008 2061 5.479306 GTGCTCCTATCACTTCTGTAACAA 58.521 41.667 0.00 0.00 0.00 2.83
2020 2073 4.350368 TCTGTAACAAGGTTGATGCTCA 57.650 40.909 0.00 0.00 0.00 4.26
2046 2102 1.813513 AACACACTATCCTGCACTGC 58.186 50.000 0.00 0.00 0.00 4.40
2047 2103 0.686789 ACACACTATCCTGCACTGCA 59.313 50.000 3.11 3.11 36.92 4.41
2048 2104 1.081892 CACACTATCCTGCACTGCAC 58.918 55.000 0.00 0.00 33.79 4.57
2049 2105 0.979665 ACACTATCCTGCACTGCACT 59.020 50.000 0.00 0.00 33.79 4.40
2051 2107 0.251354 ACTATCCTGCACTGCACTGG 59.749 55.000 0.00 0.97 33.79 4.00
2052 2108 0.251354 CTATCCTGCACTGCACTGGT 59.749 55.000 0.00 0.00 33.79 4.00
2053 2109 1.482182 CTATCCTGCACTGCACTGGTA 59.518 52.381 0.00 0.00 33.79 3.25
2054 2110 0.251354 ATCCTGCACTGCACTGGTAG 59.749 55.000 0.00 0.00 33.79 3.18
2055 2111 1.376424 CCTGCACTGCACTGGTAGG 60.376 63.158 0.00 0.00 33.79 3.18
2056 2112 1.372683 CTGCACTGCACTGGTAGGT 59.627 57.895 0.00 0.00 33.79 3.08
2057 2113 0.671781 CTGCACTGCACTGGTAGGTC 60.672 60.000 0.00 0.00 33.79 3.85
2058 2114 1.121407 TGCACTGCACTGGTAGGTCT 61.121 55.000 0.00 0.00 31.71 3.85
2059 2115 0.671781 GCACTGCACTGGTAGGTCTG 60.672 60.000 0.00 0.00 0.00 3.51
2060 2116 0.671781 CACTGCACTGGTAGGTCTGC 60.672 60.000 0.00 0.00 0.00 4.26
2061 2117 1.121407 ACTGCACTGGTAGGTCTGCA 61.121 55.000 0.00 0.00 0.00 4.41
2062 2118 0.251354 CTGCACTGGTAGGTCTGCAT 59.749 55.000 0.00 0.00 0.00 3.96
2063 2119 1.482182 CTGCACTGGTAGGTCTGCATA 59.518 52.381 0.00 0.00 0.00 3.14
2110 2167 9.679661 AGTGATAGTGATAGTGATAGTGATAGG 57.320 37.037 0.00 0.00 0.00 2.57
2130 2187 3.710209 GGATACCCCTGAATCTCCATG 57.290 52.381 0.00 0.00 0.00 3.66
2131 2188 3.251484 GGATACCCCTGAATCTCCATGA 58.749 50.000 0.00 0.00 0.00 3.07
2239 2298 1.068055 CATCTTGGGCACTGTTTCTGC 60.068 52.381 0.00 0.00 0.00 4.26
2293 2352 3.100658 CAGACTCTCATCTGGCTCATG 57.899 52.381 0.00 0.00 42.13 3.07
2294 2353 2.040939 AGACTCTCATCTGGCTCATGG 58.959 52.381 0.00 0.00 0.00 3.66
2296 2355 2.961741 GACTCTCATCTGGCTCATGGTA 59.038 50.000 0.00 0.00 0.00 3.25
2298 2357 3.133721 ACTCTCATCTGGCTCATGGTAAC 59.866 47.826 0.00 0.00 0.00 2.50
2330 2448 5.605534 AGTACTGCACCAAGATCATCATAC 58.394 41.667 0.00 0.00 0.00 2.39
2332 2450 2.804527 CTGCACCAAGATCATCATACGG 59.195 50.000 0.00 0.00 0.00 4.02
2333 2451 1.532868 GCACCAAGATCATCATACGGC 59.467 52.381 0.00 0.00 0.00 5.68
2334 2452 2.808202 GCACCAAGATCATCATACGGCT 60.808 50.000 0.00 0.00 0.00 5.52
2335 2453 2.804527 CACCAAGATCATCATACGGCTG 59.195 50.000 0.00 0.00 0.00 4.85
2336 2454 1.802960 CCAAGATCATCATACGGCTGC 59.197 52.381 0.00 0.00 0.00 5.25
2337 2455 2.549563 CCAAGATCATCATACGGCTGCT 60.550 50.000 0.00 0.00 0.00 4.24
2339 2457 1.966354 AGATCATCATACGGCTGCTGA 59.034 47.619 16.72 3.36 0.00 4.26
2341 2459 0.104855 TCATCATACGGCTGCTGACC 59.895 55.000 16.72 0.00 0.00 4.02
2342 2460 0.105593 CATCATACGGCTGCTGACCT 59.894 55.000 16.72 0.00 0.00 3.85
2343 2461 0.833287 ATCATACGGCTGCTGACCTT 59.167 50.000 16.72 0.00 0.00 3.50
2344 2462 1.480789 TCATACGGCTGCTGACCTTA 58.519 50.000 16.72 0.00 0.00 2.69
2345 2463 1.409064 TCATACGGCTGCTGACCTTAG 59.591 52.381 16.72 0.00 0.00 2.18
2346 2464 1.137086 CATACGGCTGCTGACCTTAGT 59.863 52.381 16.72 0.00 0.00 2.24
2347 2465 1.263356 TACGGCTGCTGACCTTAGTT 58.737 50.000 16.72 0.00 0.00 2.24
2348 2466 0.396811 ACGGCTGCTGACCTTAGTTT 59.603 50.000 16.72 0.00 0.00 2.66
2349 2467 1.079503 CGGCTGCTGACCTTAGTTTC 58.920 55.000 1.17 0.00 0.00 2.78
2350 2468 1.338200 CGGCTGCTGACCTTAGTTTCT 60.338 52.381 1.17 0.00 0.00 2.52
2351 2469 2.079925 GGCTGCTGACCTTAGTTTCTG 58.920 52.381 0.00 0.00 0.00 3.02
2352 2470 2.551071 GGCTGCTGACCTTAGTTTCTGT 60.551 50.000 0.00 0.00 0.00 3.41
2353 2471 3.306780 GGCTGCTGACCTTAGTTTCTGTA 60.307 47.826 0.00 0.00 0.00 2.74
2354 2472 3.680458 GCTGCTGACCTTAGTTTCTGTAC 59.320 47.826 0.00 0.00 0.00 2.90
2355 2473 4.799586 GCTGCTGACCTTAGTTTCTGTACA 60.800 45.833 0.00 0.00 0.00 2.90
2356 2474 4.883083 TGCTGACCTTAGTTTCTGTACAG 58.117 43.478 17.17 17.17 0.00 2.74
2357 2475 4.246458 GCTGACCTTAGTTTCTGTACAGG 58.754 47.826 22.48 7.47 0.00 4.00
2358 2476 4.021368 GCTGACCTTAGTTTCTGTACAGGA 60.021 45.833 22.48 11.97 0.00 3.86
2359 2477 5.510861 GCTGACCTTAGTTTCTGTACAGGAA 60.511 44.000 22.48 17.88 0.00 3.36
2360 2478 6.097915 TGACCTTAGTTTCTGTACAGGAAG 57.902 41.667 22.48 15.96 0.00 3.46
2361 2479 5.836898 TGACCTTAGTTTCTGTACAGGAAGA 59.163 40.000 22.48 8.55 0.00 2.87
2362 2480 6.325545 TGACCTTAGTTTCTGTACAGGAAGAA 59.674 38.462 22.48 15.13 0.00 2.52
2363 2481 6.522946 ACCTTAGTTTCTGTACAGGAAGAAC 58.477 40.000 22.48 19.16 32.26 3.01
2364 2482 6.099269 ACCTTAGTTTCTGTACAGGAAGAACA 59.901 38.462 22.48 4.24 32.26 3.18
2365 2483 6.424207 CCTTAGTTTCTGTACAGGAAGAACAC 59.576 42.308 22.48 8.81 32.26 3.32
2366 2484 4.704965 AGTTTCTGTACAGGAAGAACACC 58.295 43.478 22.48 7.37 32.26 4.16
2367 2485 3.764237 TTCTGTACAGGAAGAACACCC 57.236 47.619 22.48 0.00 0.00 4.61
2368 2486 2.684943 TCTGTACAGGAAGAACACCCA 58.315 47.619 22.48 0.00 0.00 4.51
2369 2487 3.248024 TCTGTACAGGAAGAACACCCAT 58.752 45.455 22.48 0.00 0.00 4.00
2370 2488 3.650942 TCTGTACAGGAAGAACACCCATT 59.349 43.478 22.48 0.00 0.00 3.16
2388 2506 5.710567 ACCCATTTAGTTTTTAGCTCTGTCC 59.289 40.000 0.00 0.00 0.00 4.02
2389 2507 5.946377 CCCATTTAGTTTTTAGCTCTGTCCT 59.054 40.000 0.00 0.00 0.00 3.85
2391 2509 7.362142 CCCATTTAGTTTTTAGCTCTGTCCTTC 60.362 40.741 0.00 0.00 0.00 3.46
2393 2511 4.022413 AGTTTTTAGCTCTGTCCTTCCC 57.978 45.455 0.00 0.00 0.00 3.97
2395 2513 3.983044 TTTTAGCTCTGTCCTTCCCTC 57.017 47.619 0.00 0.00 0.00 4.30
2396 2514 2.623418 TTAGCTCTGTCCTTCCCTCA 57.377 50.000 0.00 0.00 0.00 3.86
2397 2515 2.151502 TAGCTCTGTCCTTCCCTCAG 57.848 55.000 0.00 0.00 0.00 3.35
2398 2516 1.220477 GCTCTGTCCTTCCCTCAGC 59.780 63.158 0.00 0.00 0.00 4.26
2399 2517 1.548357 GCTCTGTCCTTCCCTCAGCA 61.548 60.000 0.00 0.00 0.00 4.41
2400 2518 0.248843 CTCTGTCCTTCCCTCAGCAC 59.751 60.000 0.00 0.00 0.00 4.40
2404 2522 1.271543 TGTCCTTCCCTCAGCACAATG 60.272 52.381 0.00 0.00 0.00 2.82
2430 2548 5.894298 TGTCATGTATTCCTTCAGCCTAT 57.106 39.130 0.00 0.00 0.00 2.57
2431 2549 6.252599 TGTCATGTATTCCTTCAGCCTATT 57.747 37.500 0.00 0.00 0.00 1.73
2434 2552 6.995091 GTCATGTATTCCTTCAGCCTATTTCT 59.005 38.462 0.00 0.00 0.00 2.52
2437 2555 8.778358 CATGTATTCCTTCAGCCTATTTCTTAC 58.222 37.037 0.00 0.00 0.00 2.34
2438 2556 7.857456 TGTATTCCTTCAGCCTATTTCTTACA 58.143 34.615 0.00 0.00 0.00 2.41
2440 2558 7.814264 ATTCCTTCAGCCTATTTCTTACATG 57.186 36.000 0.00 0.00 0.00 3.21
2475 2601 8.135529 GGTGCCTTGTTGAAATATAGATAAACC 58.864 37.037 0.00 0.00 0.00 3.27
2477 2603 9.249053 TGCCTTGTTGAAATATAGATAAACCAA 57.751 29.630 0.00 0.00 0.00 3.67
2483 2609 9.463443 GTTGAAATATAGATAAACCAATGCCAC 57.537 33.333 0.00 0.00 0.00 5.01
2487 2613 7.750229 ATATAGATAAACCAATGCCACACAG 57.250 36.000 0.00 0.00 0.00 3.66
2488 2614 2.493278 AGATAAACCAATGCCACACAGC 59.507 45.455 0.00 0.00 0.00 4.40
2489 2615 1.993956 TAAACCAATGCCACACAGCT 58.006 45.000 0.00 0.00 0.00 4.24
2490 2616 0.390124 AAACCAATGCCACACAGCTG 59.610 50.000 13.48 13.48 0.00 4.24
2491 2617 0.756442 AACCAATGCCACACAGCTGT 60.756 50.000 15.25 15.25 0.00 4.40
2492 2618 0.756442 ACCAATGCCACACAGCTGTT 60.756 50.000 18.94 6.15 0.00 3.16
2493 2619 0.038892 CCAATGCCACACAGCTGTTC 60.039 55.000 18.94 7.40 0.00 3.18
2494 2620 0.669619 CAATGCCACACAGCTGTTCA 59.330 50.000 18.94 13.02 0.00 3.18
2495 2621 1.271379 CAATGCCACACAGCTGTTCAT 59.729 47.619 18.94 14.70 0.00 2.57
2496 2622 0.885879 ATGCCACACAGCTGTTCATG 59.114 50.000 18.94 15.46 0.00 3.07
2497 2623 1.080974 GCCACACAGCTGTTCATGC 60.081 57.895 18.94 13.77 0.00 4.06
2498 2624 1.582968 CCACACAGCTGTTCATGCC 59.417 57.895 18.94 0.00 0.00 4.40
2499 2625 0.892358 CCACACAGCTGTTCATGCCT 60.892 55.000 18.94 0.00 0.00 4.75
2500 2626 0.956633 CACACAGCTGTTCATGCCTT 59.043 50.000 18.94 0.00 0.00 4.35
2501 2627 1.338973 CACACAGCTGTTCATGCCTTT 59.661 47.619 18.94 0.00 0.00 3.11
2502 2628 2.034124 ACACAGCTGTTCATGCCTTTT 58.966 42.857 18.94 0.00 0.00 2.27
2503 2629 2.431782 ACACAGCTGTTCATGCCTTTTT 59.568 40.909 18.94 0.00 0.00 1.94
2532 2658 6.711277 TCACTACTATTCAGTTCATGCCTTT 58.289 36.000 0.00 0.00 36.14 3.11
2540 2666 6.500684 TTCAGTTCATGCCTTTTATGACTC 57.499 37.500 0.00 0.00 34.50 3.36
2547 2673 5.474532 TCATGCCTTTTATGACTCCATATGC 59.525 40.000 0.00 0.00 35.38 3.14
2548 2674 4.790937 TGCCTTTTATGACTCCATATGCA 58.209 39.130 0.00 0.00 35.38 3.96
2549 2675 5.387788 TGCCTTTTATGACTCCATATGCAT 58.612 37.500 3.79 3.79 35.38 3.96
2550 2676 5.834742 TGCCTTTTATGACTCCATATGCATT 59.165 36.000 3.54 0.00 35.38 3.56
2551 2677 6.324512 TGCCTTTTATGACTCCATATGCATTT 59.675 34.615 3.54 0.00 35.38 2.32
2552 2678 6.865205 GCCTTTTATGACTCCATATGCATTTC 59.135 38.462 3.54 0.00 35.38 2.17
2553 2679 7.255730 GCCTTTTATGACTCCATATGCATTTCT 60.256 37.037 3.54 0.00 35.38 2.52
2554 2680 8.636213 CCTTTTATGACTCCATATGCATTTCTT 58.364 33.333 3.54 0.00 35.38 2.52
2647 2773 4.155644 TGTGTGCGCATCATTTCTATTTCA 59.844 37.500 15.91 0.00 0.00 2.69
2669 2795 3.480470 ACTGATTTGTTGTGTCCAGGAG 58.520 45.455 0.00 0.00 0.00 3.69
2675 2801 0.179018 GTTGTGTCCAGGAGGTTGCT 60.179 55.000 0.00 0.00 35.89 3.91
2677 2803 0.108585 TGTGTCCAGGAGGTTGCTTC 59.891 55.000 0.00 0.00 35.89 3.86
2721 2847 5.947443 AGCTGTCATTGCAATTTACTCTTC 58.053 37.500 9.83 2.98 0.00 2.87
2763 2968 4.882842 AAACTGTTGTTTTGAACCCACT 57.117 36.364 0.00 0.00 43.13 4.00
2767 2972 2.165437 TGTTGTTTTGAACCCACTCTGC 59.835 45.455 0.00 0.00 0.00 4.26
2770 2975 0.106918 TTTTGAACCCACTCTGCCGT 60.107 50.000 0.00 0.00 0.00 5.68
2771 2976 0.106918 TTTGAACCCACTCTGCCGTT 60.107 50.000 0.00 0.00 0.00 4.44
2772 2977 0.534203 TTGAACCCACTCTGCCGTTC 60.534 55.000 0.00 0.00 36.09 3.95
2773 2978 2.027625 GAACCCACTCTGCCGTTCG 61.028 63.158 0.00 0.00 0.00 3.95
2774 2979 3.530910 AACCCACTCTGCCGTTCGG 62.531 63.158 6.90 6.90 0.00 4.30
2775 2980 4.003788 CCCACTCTGCCGTTCGGT 62.004 66.667 12.81 0.00 0.00 4.69
2776 2981 2.738521 CCACTCTGCCGTTCGGTG 60.739 66.667 12.81 6.58 0.00 4.94
2777 2982 3.414700 CACTCTGCCGTTCGGTGC 61.415 66.667 12.81 0.16 0.00 5.01
2797 3003 5.819901 GGTGCTTCAGTTGCTCTTTCTATAT 59.180 40.000 0.00 0.00 0.00 0.86
2816 3022 1.631405 TTACATGGCCTGCAAAGCTT 58.369 45.000 3.32 0.00 0.00 3.74
2822 3028 0.390735 GGCCTGCAAAGCTTCCATTG 60.391 55.000 0.00 0.00 0.00 2.82
2845 3051 6.422333 TGAGGCTATCAACCATATTGTGAAA 58.578 36.000 0.00 0.00 34.02 2.69
2846 3052 6.889177 TGAGGCTATCAACCATATTGTGAAAA 59.111 34.615 0.00 0.00 34.02 2.29
2873 3079 1.503818 AAACGAGTTGCGATGCCGTT 61.504 50.000 0.00 0.00 43.98 4.44
2881 3087 1.512734 GCGATGCCGTTGCTCAAAG 60.513 57.895 0.00 0.00 38.71 2.77
2897 3103 4.331168 GCTCAAAGCGTGATCTACAAGAAT 59.669 41.667 0.00 0.00 35.07 2.40
2936 3143 8.122472 AGAACCAAAGGTAAAAGAATATGTGG 57.878 34.615 0.00 0.00 33.12 4.17
2938 3145 7.462571 ACCAAAGGTAAAAGAATATGTGGTC 57.537 36.000 0.00 0.00 32.11 4.02
2969 3181 3.134804 GGATCAAGTGGGCACATACTAGT 59.865 47.826 0.00 0.00 0.00 2.57
3001 3213 5.546526 GAGGTATCCAAAGAATAGGAGCTG 58.453 45.833 0.00 0.00 37.34 4.24
3010 3222 2.763448 AGAATAGGAGCTGTGAGTGGAC 59.237 50.000 0.00 0.00 0.00 4.02
3011 3223 2.238084 ATAGGAGCTGTGAGTGGACA 57.762 50.000 0.00 0.00 0.00 4.02
3012 3224 1.257743 TAGGAGCTGTGAGTGGACAC 58.742 55.000 0.00 0.00 40.68 3.67
3013 3225 0.470833 AGGAGCTGTGAGTGGACACT 60.471 55.000 4.35 4.35 45.84 3.55
3052 3297 6.292150 ACTTTGCTTTGTATAGGAGGATAGC 58.708 40.000 0.00 0.00 0.00 2.97
3053 3298 5.887214 TTGCTTTGTATAGGAGGATAGCA 57.113 39.130 0.00 0.00 35.77 3.49
3059 3304 5.196341 TGTATAGGAGGATAGCAACAACG 57.804 43.478 0.00 0.00 0.00 4.10
3083 3328 6.413818 CGTTTGTAGAAACAACTCAACCAATC 59.586 38.462 15.04 0.00 45.18 2.67
3135 3389 5.126222 TCAGTTTTGTTTGGTTGATGCACTA 59.874 36.000 0.00 0.00 0.00 2.74
3137 3391 6.144402 CAGTTTTGTTTGGTTGATGCACTATC 59.856 38.462 0.00 0.00 36.29 2.08
3161 3415 3.198068 GTGGTAGGTCTGCATACACATG 58.802 50.000 4.48 0.00 33.92 3.21
3167 3442 3.081061 GGTCTGCATACACATGTTTCCA 58.919 45.455 4.48 0.00 34.40 3.53
3168 3443 3.127548 GGTCTGCATACACATGTTTCCAG 59.872 47.826 4.48 0.00 34.40 3.86
3169 3444 3.127548 GTCTGCATACACATGTTTCCAGG 59.872 47.826 0.00 0.00 34.40 4.45
3170 3445 3.008923 TCTGCATACACATGTTTCCAGGA 59.991 43.478 0.00 0.00 34.40 3.86
3171 3446 3.346315 TGCATACACATGTTTCCAGGAG 58.654 45.455 0.00 0.00 34.40 3.69
3172 3447 3.008923 TGCATACACATGTTTCCAGGAGA 59.991 43.478 0.00 0.00 34.40 3.71
3173 3448 3.624861 GCATACACATGTTTCCAGGAGAG 59.375 47.826 0.00 0.00 34.40 3.20
3174 3449 2.191128 ACACATGTTTCCAGGAGAGC 57.809 50.000 0.00 0.00 0.00 4.09
3175 3450 1.701847 ACACATGTTTCCAGGAGAGCT 59.298 47.619 0.00 0.00 0.00 4.09
3176 3451 2.107204 ACACATGTTTCCAGGAGAGCTT 59.893 45.455 0.00 0.00 0.00 3.74
3177 3452 2.486982 CACATGTTTCCAGGAGAGCTTG 59.513 50.000 0.00 0.00 0.00 4.01
3178 3453 2.373169 ACATGTTTCCAGGAGAGCTTGA 59.627 45.455 0.00 0.00 0.00 3.02
3179 3454 3.009916 ACATGTTTCCAGGAGAGCTTGAT 59.990 43.478 0.00 0.00 0.00 2.57
3180 3455 4.225942 ACATGTTTCCAGGAGAGCTTGATA 59.774 41.667 0.00 0.00 0.00 2.15
3181 3456 4.207891 TGTTTCCAGGAGAGCTTGATAC 57.792 45.455 0.00 0.00 0.00 2.24
3182 3457 3.055094 TGTTTCCAGGAGAGCTTGATACC 60.055 47.826 0.00 0.00 0.00 2.73
3183 3458 1.794714 TCCAGGAGAGCTTGATACCC 58.205 55.000 0.00 0.00 0.00 3.69
3184 3459 1.008327 TCCAGGAGAGCTTGATACCCA 59.992 52.381 0.00 0.00 0.00 4.51
3195 3470 4.070716 GCTTGATACCCATGAATCTCCAG 58.929 47.826 0.00 0.00 0.00 3.86
3202 3477 2.158505 CCCATGAATCTCCAGGAGCAAT 60.159 50.000 12.26 0.00 0.00 3.56
3212 3487 2.056223 AGGAGCAATGTGCCATGCC 61.056 57.895 0.00 0.00 46.52 4.40
3224 3499 0.250467 GCCATGCCTGTCGTATCCAT 60.250 55.000 0.00 0.00 0.00 3.41
3233 3533 3.068165 CCTGTCGTATCCATAACAGCAGA 59.932 47.826 0.00 0.00 38.21 4.26
3318 3648 6.811574 TCTGGCCCATTTCTAGACCTATATA 58.188 40.000 0.00 0.00 0.00 0.86
3329 3659 7.747155 TCTAGACCTATATAGTTGTCACAGC 57.253 40.000 16.70 0.00 0.00 4.40
3332 3662 5.900123 AGACCTATATAGTTGTCACAGCCTT 59.100 40.000 16.70 0.00 0.00 4.35
3414 3790 2.736670 ACTGCACAGGAAGAAAACCT 57.263 45.000 2.21 0.00 38.40 3.50
3450 3827 3.698040 CTGCCCTTTTCTCAGCATAATGT 59.302 43.478 0.00 0.00 34.16 2.71
3474 3851 3.877559 TGTCATGTATTCCTTCAGCCTG 58.122 45.455 0.00 0.00 0.00 4.85
3479 3856 4.365514 TGTATTCCTTCAGCCTGTTTCA 57.634 40.909 0.00 0.00 0.00 2.69
3491 3871 6.116806 TCAGCCTGTTTCAGTACAAGTTTTA 58.883 36.000 0.00 0.00 0.00 1.52
3573 3961 5.882557 ACTACTCAGTTCATGCCTTTTATGG 59.117 40.000 0.00 0.00 0.00 2.74
3589 3977 8.524870 CCTTTTATGGCTTCATATGCATTTAC 57.475 34.615 3.54 0.00 33.79 2.01
3590 3978 8.362639 CCTTTTATGGCTTCATATGCATTTACT 58.637 33.333 3.54 0.00 33.79 2.24
3623 4781 3.334583 TCATGCCTGGTTCTGTACTTC 57.665 47.619 0.00 0.00 0.00 3.01
3733 4986 7.907045 GCTCTCATGTATGTCAAAACATTACAG 59.093 37.037 0.00 0.98 43.74 2.74
3736 4989 9.712359 CTCATGTATGTCAAAACATTACAGATG 57.288 33.333 0.00 0.00 43.74 2.90
3737 4990 8.183536 TCATGTATGTCAAAACATTACAGATGC 58.816 33.333 0.00 0.00 43.74 3.91
3745 4998 6.152492 TCAAAACATTACAGATGCCTGCAATA 59.848 34.615 0.00 0.00 44.16 1.90
3777 5030 5.195001 TGGTAATCTTGTGTTTCTTTGCC 57.805 39.130 0.00 0.00 0.00 4.52
3794 5049 2.091541 TGCCAAGGACGAATTTGGATC 58.908 47.619 16.69 0.00 45.32 3.36
3818 5107 6.211584 TCTCTGCTCCCTTATATGTATTCCAC 59.788 42.308 0.00 0.00 0.00 4.02
3835 5124 9.173021 TGTATTCCACAAGTTTGTATTGATAGG 57.827 33.333 0.00 0.00 39.91 2.57
3840 5129 8.723365 TCCACAAGTTTGTATTGATAGGGATAT 58.277 33.333 0.00 0.00 39.91 1.63
3883 5173 6.894828 TCAAGTTACAAATTTCGCTAGGTTC 58.105 36.000 0.00 0.00 0.00 3.62
3921 5212 8.161425 TCCATACATAAAGCCTTATTTAGGTCC 58.839 37.037 0.41 0.00 46.61 4.46
3935 5226 2.921834 AGGTCCTACAGCCTGTAAGA 57.078 50.000 5.98 2.35 34.07 2.10
3954 5245 6.878923 TGTAAGATCCTATGGTGTTTGTTCTG 59.121 38.462 0.00 0.00 0.00 3.02
3968 5259 5.048782 TGTTTGTTCTGTGCTGTCATATTCC 60.049 40.000 0.00 0.00 0.00 3.01
3996 5288 4.379339 TCCTTTGTGTAAACTGCAAACC 57.621 40.909 0.00 0.00 0.00 3.27
4001 5293 4.116747 TGTGTAAACTGCAAACCCTTTG 57.883 40.909 0.00 0.00 43.44 2.77
4002 5294 3.511934 TGTGTAAACTGCAAACCCTTTGT 59.488 39.130 0.00 0.00 42.56 2.83
4003 5295 4.109766 GTGTAAACTGCAAACCCTTTGTC 58.890 43.478 0.00 0.00 42.56 3.18
4044 5337 4.683129 GCTTTGTTCCACTTGTCCCAAATT 60.683 41.667 0.00 0.00 0.00 1.82
4047 5340 6.739331 TTGTTCCACTTGTCCCAAATTAAT 57.261 33.333 0.00 0.00 0.00 1.40
4086 5403 1.740025 GTTCTCAAGTATGCAGTGCCC 59.260 52.381 13.72 0.09 0.00 5.36
4088 5405 1.065926 TCTCAAGTATGCAGTGCCCAG 60.066 52.381 13.72 0.00 0.00 4.45
4145 5467 8.786826 TTGGATATAGTTAACCAACTCAGTTG 57.213 34.615 10.91 10.91 44.04 3.16
4169 5491 4.225942 AGGATGATTCACTAGCTGGTTCAA 59.774 41.667 0.00 0.00 0.00 2.69
4170 5492 4.574013 GGATGATTCACTAGCTGGTTCAAG 59.426 45.833 0.00 0.00 0.00 3.02
4172 5494 4.318332 TGATTCACTAGCTGGTTCAAGTG 58.682 43.478 0.00 2.49 40.54 3.16
4173 5495 4.040339 TGATTCACTAGCTGGTTCAAGTGA 59.960 41.667 10.09 10.09 44.86 3.41
4174 5496 3.386768 TCACTAGCTGGTTCAAGTGAC 57.613 47.619 10.09 0.00 42.46 3.67
4175 5497 2.965831 TCACTAGCTGGTTCAAGTGACT 59.034 45.455 10.09 0.00 42.46 3.41
4176 5498 4.149598 TCACTAGCTGGTTCAAGTGACTA 58.850 43.478 10.09 0.00 42.46 2.59
4179 5501 5.020132 ACTAGCTGGTTCAAGTGACTATCT 58.980 41.667 0.00 0.00 0.00 1.98
4180 5502 4.899352 AGCTGGTTCAAGTGACTATCTT 57.101 40.909 0.00 0.00 0.00 2.40
4211 5533 3.248363 TCACTTGAACTGAAACAGCATCG 59.752 43.478 0.00 0.00 34.37 3.84
4217 5539 0.813184 CTGAAACAGCATCGGCCAAT 59.187 50.000 2.24 0.00 42.56 3.16
4223 5545 0.940126 CAGCATCGGCCAATGAGTAC 59.060 55.000 8.19 0.00 42.56 2.73
4244 5566 9.308318 GAGTACCTAGTTCTCAGAAATTTCATC 57.692 37.037 19.99 4.12 31.73 2.92
4334 5665 7.203255 ACACTCAATAACTAAACTCCTTTGC 57.797 36.000 0.00 0.00 0.00 3.68
4353 5684 3.071479 TGCGAGGTTTATTGTCTCAACC 58.929 45.455 0.00 0.00 40.40 3.77
4420 5755 8.649841 CAAAATATGTCTTTGCATAAACAGTGG 58.350 33.333 0.00 0.00 35.30 4.00
4431 5766 6.604012 TGCATAAACAGTGGTACATAAAACG 58.396 36.000 0.00 0.00 44.52 3.60
4442 5777 5.938710 TGGTACATAAAACGAAAGGCACATA 59.061 36.000 0.00 0.00 0.00 2.29
4444 5779 6.093082 GGTACATAAAACGAAAGGCACATACT 59.907 38.462 0.00 0.00 0.00 2.12
4491 5826 2.158914 TGTATCAGCTCGTGCCATTGAT 60.159 45.455 14.51 14.51 40.80 2.57
4495 5830 0.036105 AGCTCGTGCCATTGATGACA 60.036 50.000 5.73 0.00 40.80 3.58
4508 5843 6.460123 GCCATTGATGACACCTAACATTAAGG 60.460 42.308 0.00 0.00 40.20 2.69
4564 5899 2.371841 AGCATTGTTGGACTGTGACCTA 59.628 45.455 0.00 0.00 0.00 3.08
4573 5908 2.554344 GGACTGTGACCTATTTTGCCCA 60.554 50.000 0.00 0.00 0.00 5.36
4594 5929 8.034215 TGCCCATTTAATCACTCATTTTAACTG 58.966 33.333 0.00 0.00 0.00 3.16
4629 5964 4.562082 ACATGAAGTACGAATCGGTTGAA 58.438 39.130 7.80 0.00 0.00 2.69
4701 6036 1.305482 CGTCGTTTTGTAAAGCAGCG 58.695 50.000 0.00 0.00 0.00 5.18
4940 6296 4.023021 TGCAAACGAATGGTAGGTTTTACC 60.023 41.667 0.00 0.00 38.99 2.85
5013 6373 5.423610 CAGTCTATATGGCCTAGCTTGGTAT 59.576 44.000 15.85 12.43 0.00 2.73
5017 6377 7.124448 GTCTATATGGCCTAGCTTGGTATTACT 59.876 40.741 15.85 0.17 0.00 2.24
5029 6389 5.220854 GCTTGGTATTACTGCATACCTGTTG 60.221 44.000 13.91 4.67 46.43 3.33
5059 6439 8.450578 AACACATAATACAACATATGGTCTGG 57.549 34.615 7.80 0.00 34.52 3.86
5066 6446 3.885297 ACAACATATGGTCTGGCTATTGC 59.115 43.478 7.80 0.00 38.76 3.56
5074 6454 2.019249 GTCTGGCTATTGCTGCATTGA 58.981 47.619 1.84 0.00 39.59 2.57
5078 6458 5.048224 GTCTGGCTATTGCTGCATTGATAAT 60.048 40.000 1.84 0.00 39.59 1.28
5079 6459 5.537295 TCTGGCTATTGCTGCATTGATAATT 59.463 36.000 1.84 0.00 39.59 1.40
5080 6460 6.041182 TCTGGCTATTGCTGCATTGATAATTT 59.959 34.615 1.84 0.00 39.59 1.82
5081 6461 6.584488 TGGCTATTGCTGCATTGATAATTTT 58.416 32.000 1.84 0.00 39.59 1.82
5083 6463 7.225145 TGGCTATTGCTGCATTGATAATTTTTC 59.775 33.333 1.84 0.00 39.59 2.29
5172 6608 6.347806 GCATGACTCTTGATGATGCAGAATAG 60.348 42.308 0.00 0.00 39.39 1.73
5173 6609 6.475596 TGACTCTTGATGATGCAGAATAGA 57.524 37.500 0.00 0.00 0.00 1.98
5174 6610 6.514063 TGACTCTTGATGATGCAGAATAGAG 58.486 40.000 0.00 2.32 35.27 2.43
5175 6611 6.323225 TGACTCTTGATGATGCAGAATAGAGA 59.677 38.462 15.76 7.66 33.77 3.10
5176 6612 7.122138 ACTCTTGATGATGCAGAATAGAGAA 57.878 36.000 15.76 0.00 33.77 2.87
5177 6613 7.737869 ACTCTTGATGATGCAGAATAGAGAAT 58.262 34.615 15.76 0.00 33.77 2.40
5178 6614 8.868103 ACTCTTGATGATGCAGAATAGAGAATA 58.132 33.333 15.76 0.00 33.77 1.75
5254 6690 3.945921 GAGGTCATAGCTTTTAACCCACC 59.054 47.826 0.00 0.00 0.00 4.61
5265 6701 4.571372 TTTAACCCACCGCAGTAAAAAG 57.429 40.909 0.00 0.00 0.00 2.27
5268 6704 1.951602 ACCCACCGCAGTAAAAAGAAC 59.048 47.619 0.00 0.00 0.00 3.01
5495 6932 1.506493 AAGTGAGCACAAGAAGAGCG 58.494 50.000 3.19 0.00 38.98 5.03
5534 6971 2.925563 CAATTTCAAGGAAATCCAGCGC 59.074 45.455 0.00 0.00 40.77 5.92
5555 6992 1.305623 CCTGGAGATTTGGCTGGCT 59.694 57.895 2.00 0.00 0.00 4.75
5668 7105 2.109799 AGCGCGGCTGCTATTGAT 59.890 55.556 17.03 0.00 45.14 2.57
5670 7107 1.958205 GCGCGGCTGCTATTGATCT 60.958 57.895 17.03 0.00 39.65 2.75
5671 7108 1.858041 CGCGGCTGCTATTGATCTG 59.142 57.895 17.03 0.00 39.65 2.90
5672 7109 0.598419 CGCGGCTGCTATTGATCTGA 60.598 55.000 17.03 0.00 39.65 3.27
5673 7110 0.864455 GCGGCTGCTATTGATCTGAC 59.136 55.000 11.21 0.00 38.39 3.51
5691 7132 1.061131 GACTTGCATTCGTCGATGTGG 59.939 52.381 4.21 0.00 0.00 4.17
5694 7135 3.005898 CATTCGTCGATGTGGGCG 58.994 61.111 4.21 0.00 0.00 6.13
5810 7255 2.046988 GCAACCCCTGGCAAATGC 60.047 61.111 0.00 0.00 41.14 3.56
5840 7285 4.878397 GGGTGATCTAAGACCATGTCAAAG 59.122 45.833 2.66 0.00 34.60 2.77
5873 7320 5.711976 ACATTTTGATCCAACCCTCTACAAG 59.288 40.000 0.00 0.00 0.00 3.16
5874 7321 4.993705 TTTGATCCAACCCTCTACAAGT 57.006 40.909 0.00 0.00 0.00 3.16
5876 7323 3.791320 TGATCCAACCCTCTACAAGTCT 58.209 45.455 0.00 0.00 0.00 3.24
5915 7364 4.062293 CAGTATCAAGGTTTGACACGGAA 58.938 43.478 0.00 0.00 41.78 4.30
5997 7446 3.027170 GCGTGACAAGGGTGCATCG 62.027 63.158 0.00 0.00 0.00 3.84
5998 7447 2.390599 CGTGACAAGGGTGCATCGG 61.391 63.158 0.00 0.00 0.00 4.18
6039 7488 0.108329 ATGTCCCTTGCCGTAGTTCG 60.108 55.000 0.00 0.00 39.52 3.95
6065 7516 2.742053 GGTAGCAGTTGTACATGTGGTG 59.258 50.000 9.11 0.00 0.00 4.17
6080 7531 5.709631 ACATGTGGTGTGTGCTTATGATTTA 59.290 36.000 0.00 0.00 40.28 1.40
6109 7564 2.567985 TCATCATGCTGTATGCCTGTG 58.432 47.619 0.42 0.00 42.00 3.66
6152 7608 4.554723 GCACAGAATTGTACCAGTGTTGTC 60.555 45.833 0.00 0.00 35.25 3.18
6158 7614 7.803189 CAGAATTGTACCAGTGTTGTCATTAAC 59.197 37.037 0.00 0.00 0.00 2.01
6185 7641 9.416794 CTATAAGGTTATTGCTCATCTGTGTAG 57.583 37.037 0.00 0.00 0.00 2.74
6186 7642 5.683876 AGGTTATTGCTCATCTGTGTAGT 57.316 39.130 0.00 0.00 0.00 2.73
6187 7643 5.423015 AGGTTATTGCTCATCTGTGTAGTG 58.577 41.667 0.00 0.00 0.00 2.74
6201 7657 3.888323 TGTGTAGTGTGCATTGGTGATTT 59.112 39.130 0.00 0.00 0.00 2.17
6202 7658 4.340666 TGTGTAGTGTGCATTGGTGATTTT 59.659 37.500 0.00 0.00 0.00 1.82
6203 7659 5.163468 TGTGTAGTGTGCATTGGTGATTTTT 60.163 36.000 0.00 0.00 0.00 1.94
6204 7660 5.175491 GTGTAGTGTGCATTGGTGATTTTTG 59.825 40.000 0.00 0.00 0.00 2.44
6205 7661 4.669206 AGTGTGCATTGGTGATTTTTGA 57.331 36.364 0.00 0.00 0.00 2.69
6228 7686 3.136763 CCACATTGCAGTGCTAGGATAG 58.863 50.000 17.71 7.06 43.09 2.08
6229 7687 3.432749 CCACATTGCAGTGCTAGGATAGT 60.433 47.826 17.71 3.55 41.93 2.12
6230 7688 4.194640 CACATTGCAGTGCTAGGATAGTT 58.805 43.478 17.71 0.00 41.93 2.24
6231 7689 5.359756 CACATTGCAGTGCTAGGATAGTTA 58.640 41.667 17.71 0.00 41.93 2.24
6241 7701 5.409826 GTGCTAGGATAGTTATTGCCATGTC 59.590 44.000 0.00 0.00 41.93 3.06
6251 7711 6.179756 AGTTATTGCCATGTCTGTTGTATGA 58.820 36.000 0.00 0.00 0.00 2.15
6253 7713 2.710377 TGCCATGTCTGTTGTATGACC 58.290 47.619 0.00 0.00 32.67 4.02
6259 7719 6.710295 GCCATGTCTGTTGTATGACCATTATA 59.290 38.462 0.00 0.00 32.67 0.98
6298 7773 8.553459 ACAAACTGACAGATAAATGAAGGTAG 57.447 34.615 10.08 0.00 0.00 3.18
6300 7775 8.446273 CAAACTGACAGATAAATGAAGGTAGTG 58.554 37.037 10.08 0.00 0.00 2.74
6314 7789 9.838339 AATGAAGGTAGTGAAATAGTAAGATGG 57.162 33.333 0.00 0.00 0.00 3.51
6316 7791 8.258007 TGAAGGTAGTGAAATAGTAAGATGGTG 58.742 37.037 0.00 0.00 0.00 4.17
6442 7943 4.274978 GCACTGCCCTAATTAAACCCTAA 58.725 43.478 0.00 0.00 0.00 2.69
6443 7944 4.707934 GCACTGCCCTAATTAAACCCTAAA 59.292 41.667 0.00 0.00 0.00 1.85
6444 7945 5.362717 GCACTGCCCTAATTAAACCCTAAAT 59.637 40.000 0.00 0.00 0.00 1.40
6445 7946 6.548251 GCACTGCCCTAATTAAACCCTAAATA 59.452 38.462 0.00 0.00 0.00 1.40
6446 7947 7.068962 GCACTGCCCTAATTAAACCCTAAATAA 59.931 37.037 0.00 0.00 0.00 1.40
6447 7948 8.973182 CACTGCCCTAATTAAACCCTAAATAAA 58.027 33.333 0.00 0.00 0.00 1.40
6474 7975 7.482169 AAATAAACATTTCTCTTTCCCCTCC 57.518 36.000 0.00 0.00 0.00 4.30
6539 8077 4.576873 CCAACCCCAAACACAAATTAAACC 59.423 41.667 0.00 0.00 0.00 3.27
6573 8111 5.084818 TGTAATTAAGCAGCAGCAGTAGA 57.915 39.130 3.17 0.00 45.49 2.59
6574 8112 4.870426 TGTAATTAAGCAGCAGCAGTAGAC 59.130 41.667 3.17 0.00 45.49 2.59
6610 8148 2.084121 ATTAACCTTTCCCCCTCCCA 57.916 50.000 0.00 0.00 0.00 4.37
6615 8153 1.699752 CTTTCCCCCTCCCATTGCT 59.300 57.895 0.00 0.00 0.00 3.91
6650 8188 2.435805 AGCTTCAGAGTGAAAGTGTCCA 59.564 45.455 0.00 0.00 35.73 4.02
6651 8189 2.545946 GCTTCAGAGTGAAAGTGTCCAC 59.454 50.000 0.00 0.00 35.73 4.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
95 96 0.834687 TGGCTGTTTAGACGGGAGGT 60.835 55.000 0.00 0.00 33.27 3.85
176 177 4.013267 TCTTCAAAGCAAAGGGAGAGAG 57.987 45.455 0.00 0.00 0.00 3.20
357 358 4.103153 AGTTTGAGGGTCTGAATCTGTTCA 59.897 41.667 0.00 0.00 41.89 3.18
514 515 2.101582 GGTCGTGCTCCTAACAGATCAT 59.898 50.000 0.00 0.00 0.00 2.45
654 656 6.040278 CAGTGATACACATCTCACCATAGAGT 59.960 42.308 4.75 0.00 42.18 3.24
655 657 6.040278 ACAGTGATACACATCTCACCATAGAG 59.960 42.308 0.00 0.00 42.18 2.43
656 658 5.893824 ACAGTGATACACATCTCACCATAGA 59.106 40.000 0.00 0.00 42.18 1.98
657 659 6.154203 ACAGTGATACACATCTCACCATAG 57.846 41.667 0.00 0.00 42.18 2.23
658 660 6.070824 ACAACAGTGATACACATCTCACCATA 60.071 38.462 0.00 0.00 42.18 2.74
659 661 5.181009 CAACAGTGATACACATCTCACCAT 58.819 41.667 0.00 0.00 42.18 3.55
660 662 4.040339 ACAACAGTGATACACATCTCACCA 59.960 41.667 0.00 0.00 42.18 4.17
661 663 4.569943 ACAACAGTGATACACATCTCACC 58.430 43.478 0.00 0.00 42.18 4.02
662 664 6.156519 TGTACAACAGTGATACACATCTCAC 58.843 40.000 0.00 0.00 41.65 3.51
663 665 6.339587 TGTACAACAGTGATACACATCTCA 57.660 37.500 0.00 0.00 36.74 3.27
664 666 7.331934 ACATTGTACAACAGTGATACACATCTC 59.668 37.037 11.22 0.00 37.96 2.75
665 667 7.161404 ACATTGTACAACAGTGATACACATCT 58.839 34.615 11.22 0.00 37.96 2.90
666 668 7.331934 AGACATTGTACAACAGTGATACACATC 59.668 37.037 17.42 3.22 37.96 3.06
667 669 7.161404 AGACATTGTACAACAGTGATACACAT 58.839 34.615 17.42 0.00 37.96 3.21
668 670 6.521162 AGACATTGTACAACAGTGATACACA 58.479 36.000 17.42 0.00 37.96 3.72
669 671 8.595533 CATAGACATTGTACAACAGTGATACAC 58.404 37.037 17.42 5.14 37.96 2.90
670 672 8.527810 TCATAGACATTGTACAACAGTGATACA 58.472 33.333 17.42 0.00 37.96 2.29
671 673 8.926715 TCATAGACATTGTACAACAGTGATAC 57.073 34.615 17.42 6.00 37.96 2.24
672 674 8.966868 TCTCATAGACATTGTACAACAGTGATA 58.033 33.333 17.42 11.44 37.96 2.15
673 675 7.840931 TCTCATAGACATTGTACAACAGTGAT 58.159 34.615 17.42 9.52 37.96 3.06
674 676 7.227049 TCTCATAGACATTGTACAACAGTGA 57.773 36.000 17.42 11.82 37.96 3.41
675 677 7.761249 TCATCTCATAGACATTGTACAACAGTG 59.239 37.037 17.42 12.02 41.01 3.66
676 678 7.840931 TCATCTCATAGACATTGTACAACAGT 58.159 34.615 11.22 12.65 0.00 3.55
677 679 8.707938 TTCATCTCATAGACATTGTACAACAG 57.292 34.615 11.22 9.31 0.00 3.16
678 680 9.101655 CATTCATCTCATAGACATTGTACAACA 57.898 33.333 11.22 0.00 0.00 3.33
679 681 8.554528 CCATTCATCTCATAGACATTGTACAAC 58.445 37.037 11.22 0.00 0.00 3.32
680 682 8.485392 TCCATTCATCTCATAGACATTGTACAA 58.515 33.333 11.41 11.41 0.00 2.41
681 683 8.021898 TCCATTCATCTCATAGACATTGTACA 57.978 34.615 0.00 0.00 0.00 2.90
682 684 8.893219 TTCCATTCATCTCATAGACATTGTAC 57.107 34.615 0.00 0.00 0.00 2.90
687 689 9.682465 CCAATATTCCATTCATCTCATAGACAT 57.318 33.333 0.00 0.00 0.00 3.06
688 690 7.609146 GCCAATATTCCATTCATCTCATAGACA 59.391 37.037 0.00 0.00 0.00 3.41
689 691 7.201591 CGCCAATATTCCATTCATCTCATAGAC 60.202 40.741 0.00 0.00 0.00 2.59
690 692 6.820152 CGCCAATATTCCATTCATCTCATAGA 59.180 38.462 0.00 0.00 0.00 1.98
691 693 6.457934 GCGCCAATATTCCATTCATCTCATAG 60.458 42.308 0.00 0.00 0.00 2.23
692 694 5.355071 GCGCCAATATTCCATTCATCTCATA 59.645 40.000 0.00 0.00 0.00 2.15
693 695 4.157289 GCGCCAATATTCCATTCATCTCAT 59.843 41.667 0.00 0.00 0.00 2.90
694 696 3.503363 GCGCCAATATTCCATTCATCTCA 59.497 43.478 0.00 0.00 0.00 3.27
695 697 3.119708 GGCGCCAATATTCCATTCATCTC 60.120 47.826 24.80 0.00 0.00 2.75
696 698 2.821969 GGCGCCAATATTCCATTCATCT 59.178 45.455 24.80 0.00 0.00 2.90
697 699 2.821969 AGGCGCCAATATTCCATTCATC 59.178 45.455 31.54 0.00 0.00 2.92
698 700 2.821969 GAGGCGCCAATATTCCATTCAT 59.178 45.455 31.54 0.89 0.00 2.57
699 701 2.158623 AGAGGCGCCAATATTCCATTCA 60.159 45.455 31.54 0.00 0.00 2.57
700 702 2.227388 CAGAGGCGCCAATATTCCATTC 59.773 50.000 31.54 13.28 0.00 2.67
701 703 2.233271 CAGAGGCGCCAATATTCCATT 58.767 47.619 31.54 2.38 0.00 3.16
702 704 1.546323 CCAGAGGCGCCAATATTCCAT 60.546 52.381 31.54 3.33 0.00 3.41
703 705 0.179020 CCAGAGGCGCCAATATTCCA 60.179 55.000 31.54 0.00 0.00 3.53
704 706 0.179018 ACCAGAGGCGCCAATATTCC 60.179 55.000 31.54 8.08 0.00 3.01
705 707 0.947244 CACCAGAGGCGCCAATATTC 59.053 55.000 31.54 17.38 0.00 1.75
706 708 1.103398 GCACCAGAGGCGCCAATATT 61.103 55.000 31.54 7.13 0.00 1.28
707 709 1.526917 GCACCAGAGGCGCCAATAT 60.527 57.895 31.54 7.63 0.00 1.28
708 710 2.124736 GCACCAGAGGCGCCAATA 60.125 61.111 31.54 0.00 0.00 1.90
722 724 3.535280 TTTTTGAACAAAGAGGGGCAC 57.465 42.857 0.46 0.00 0.00 5.01
754 756 1.402968 TCCTACTATTCACACGGCGAC 59.597 52.381 16.62 0.00 0.00 5.19
755 757 1.402968 GTCCTACTATTCACACGGCGA 59.597 52.381 16.62 0.00 0.00 5.54
756 758 1.535437 GGTCCTACTATTCACACGGCG 60.535 57.143 4.80 4.80 0.00 6.46
757 759 1.535437 CGGTCCTACTATTCACACGGC 60.535 57.143 0.00 0.00 0.00 5.68
758 760 2.019249 TCGGTCCTACTATTCACACGG 58.981 52.381 0.00 0.00 0.00 4.94
759 761 2.223433 GGTCGGTCCTACTATTCACACG 60.223 54.545 0.00 0.00 0.00 4.49
760 762 3.022406 AGGTCGGTCCTACTATTCACAC 58.978 50.000 0.00 0.00 46.10 3.82
761 763 3.021695 CAGGTCGGTCCTACTATTCACA 58.978 50.000 0.00 0.00 46.24 3.58
762 764 2.223758 GCAGGTCGGTCCTACTATTCAC 60.224 54.545 0.00 0.00 46.24 3.18
763 765 2.029623 GCAGGTCGGTCCTACTATTCA 58.970 52.381 0.00 0.00 46.24 2.57
764 766 1.001597 CGCAGGTCGGTCCTACTATTC 60.002 57.143 0.00 0.00 46.24 1.75
765 767 1.030457 CGCAGGTCGGTCCTACTATT 58.970 55.000 0.00 0.00 46.24 1.73
766 768 2.716814 CGCAGGTCGGTCCTACTAT 58.283 57.895 0.00 0.00 46.24 2.12
767 769 4.230603 CGCAGGTCGGTCCTACTA 57.769 61.111 0.00 0.00 46.24 1.82
874 882 0.914644 CCCCTGTCCATCTGTGTGAT 59.085 55.000 0.00 0.00 35.40 3.06
882 890 1.103398 CGGAAATGCCCCTGTCCATC 61.103 60.000 0.00 0.00 0.00 3.51
883 891 1.076777 CGGAAATGCCCCTGTCCAT 60.077 57.895 0.00 0.00 0.00 3.41
884 892 2.354729 CGGAAATGCCCCTGTCCA 59.645 61.111 0.00 0.00 0.00 4.02
1713 1755 1.254026 GGTTTACCTGCCACCCTTTC 58.746 55.000 0.00 0.00 0.00 2.62
1730 1772 0.554305 AGGGGGAACTTTTTGTCGGT 59.446 50.000 0.00 0.00 0.00 4.69
1753 1795 1.144936 GAAGAGAGGTCCATGGGCG 59.855 63.158 13.02 0.00 0.00 6.13
1754 1796 0.179936 CAGAAGAGAGGTCCATGGGC 59.820 60.000 13.02 10.72 0.00 5.36
1758 1800 1.489649 CATGGCAGAAGAGAGGTCCAT 59.510 52.381 0.00 0.00 34.90 3.41
1759 1801 0.907486 CATGGCAGAAGAGAGGTCCA 59.093 55.000 0.00 0.00 0.00 4.02
1760 1802 1.198713 TCATGGCAGAAGAGAGGTCC 58.801 55.000 0.00 0.00 0.00 4.46
1950 2003 2.719531 TTAGTGCAGGTGTTTCCACA 57.280 45.000 0.00 0.00 43.71 4.17
1951 2004 2.159627 CGATTAGTGCAGGTGTTTCCAC 59.840 50.000 0.00 0.00 41.06 4.02
1952 2005 2.422597 CGATTAGTGCAGGTGTTTCCA 58.577 47.619 0.00 0.00 39.02 3.53
1953 2006 1.130561 GCGATTAGTGCAGGTGTTTCC 59.869 52.381 0.00 0.00 0.00 3.13
1997 2050 4.756642 TGAGCATCAACCTTGTTACAGAAG 59.243 41.667 0.00 0.00 45.97 2.85
2020 2073 4.396166 GTGCAGGATAGTGTGTTTAGCATT 59.604 41.667 0.00 0.00 0.00 3.56
2046 2102 2.487934 GCATATGCAGACCTACCAGTG 58.512 52.381 22.84 0.00 41.59 3.66
2047 2103 2.918712 GCATATGCAGACCTACCAGT 57.081 50.000 22.84 0.00 41.59 4.00
2059 2115 5.693104 CCTGGAAAAATGTGTATGCATATGC 59.307 40.000 21.09 21.09 42.50 3.14
2060 2116 7.041635 TCCTGGAAAAATGTGTATGCATATG 57.958 36.000 10.16 0.00 0.00 1.78
2061 2117 6.835488 ACTCCTGGAAAAATGTGTATGCATAT 59.165 34.615 10.16 0.00 0.00 1.78
2062 2118 6.095300 CACTCCTGGAAAAATGTGTATGCATA 59.905 38.462 1.16 1.16 0.00 3.14
2063 2119 5.018809 ACTCCTGGAAAAATGTGTATGCAT 58.981 37.500 3.79 3.79 0.00 3.96
2110 2167 3.008485 GTCATGGAGATTCAGGGGTATCC 59.992 52.174 0.00 0.00 0.00 2.59
2126 2183 1.135199 GCACTTTGCTCATGGTCATGG 60.135 52.381 10.61 3.75 40.96 3.66
2127 2184 1.135199 GGCACTTTGCTCATGGTCATG 60.135 52.381 4.67 4.67 44.28 3.07
2128 2185 1.180029 GGCACTTTGCTCATGGTCAT 58.820 50.000 0.00 0.00 44.28 3.06
2129 2186 0.178995 TGGCACTTTGCTCATGGTCA 60.179 50.000 0.00 0.00 44.28 4.02
2130 2187 1.135199 CATGGCACTTTGCTCATGGTC 60.135 52.381 15.95 0.00 42.71 4.02
2131 2188 0.892755 CATGGCACTTTGCTCATGGT 59.107 50.000 15.95 0.00 42.71 3.55
2293 2352 4.922103 GTGCAGTACTCAACTACTGTTACC 59.078 45.833 0.00 0.00 43.87 2.85
2294 2353 4.922103 GGTGCAGTACTCAACTACTGTTAC 59.078 45.833 0.00 7.42 43.87 2.50
2296 2355 3.386726 TGGTGCAGTACTCAACTACTGTT 59.613 43.478 10.42 0.00 43.87 3.16
2298 2357 3.660501 TGGTGCAGTACTCAACTACTG 57.339 47.619 10.42 2.54 44.52 2.74
2300 2359 4.252971 TCTTGGTGCAGTACTCAACTAC 57.747 45.455 10.42 0.00 35.76 2.73
2305 2423 3.515104 TGATGATCTTGGTGCAGTACTCA 59.485 43.478 0.00 0.00 0.00 3.41
2306 2424 4.128925 TGATGATCTTGGTGCAGTACTC 57.871 45.455 0.00 0.00 0.00 2.59
2330 2448 1.079503 GAAACTAAGGTCAGCAGCCG 58.920 55.000 0.00 0.00 0.00 5.52
2332 2450 2.772287 ACAGAAACTAAGGTCAGCAGC 58.228 47.619 0.00 0.00 0.00 5.25
2333 2451 4.883083 TGTACAGAAACTAAGGTCAGCAG 58.117 43.478 0.00 0.00 0.00 4.24
2334 2452 4.262463 CCTGTACAGAAACTAAGGTCAGCA 60.262 45.833 24.68 0.00 0.00 4.41
2335 2453 4.021368 TCCTGTACAGAAACTAAGGTCAGC 60.021 45.833 24.68 0.00 0.00 4.26
2336 2454 5.723672 TCCTGTACAGAAACTAAGGTCAG 57.276 43.478 24.68 2.63 0.00 3.51
2337 2455 5.836898 TCTTCCTGTACAGAAACTAAGGTCA 59.163 40.000 24.68 2.19 0.00 4.02
2339 2457 6.099269 TGTTCTTCCTGTACAGAAACTAAGGT 59.901 38.462 24.68 0.00 30.76 3.50
2341 2459 6.424207 GGTGTTCTTCCTGTACAGAAACTAAG 59.576 42.308 24.68 16.78 30.76 2.18
2342 2460 6.285990 GGTGTTCTTCCTGTACAGAAACTAA 58.714 40.000 24.68 8.69 30.76 2.24
2343 2461 5.221581 GGGTGTTCTTCCTGTACAGAAACTA 60.222 44.000 24.68 10.08 30.76 2.24
2344 2462 4.444449 GGGTGTTCTTCCTGTACAGAAACT 60.444 45.833 24.68 0.00 30.76 2.66
2345 2463 3.813724 GGGTGTTCTTCCTGTACAGAAAC 59.186 47.826 24.68 19.66 30.76 2.78
2346 2464 3.456644 TGGGTGTTCTTCCTGTACAGAAA 59.543 43.478 24.68 9.73 30.76 2.52
2347 2465 3.042682 TGGGTGTTCTTCCTGTACAGAA 58.957 45.455 24.68 14.50 0.00 3.02
2348 2466 2.684943 TGGGTGTTCTTCCTGTACAGA 58.315 47.619 24.68 7.64 0.00 3.41
2349 2467 3.703001 ATGGGTGTTCTTCCTGTACAG 57.297 47.619 16.34 16.34 0.00 2.74
2350 2468 4.447138 AAATGGGTGTTCTTCCTGTACA 57.553 40.909 0.00 0.00 0.00 2.90
2351 2469 5.557866 ACTAAATGGGTGTTCTTCCTGTAC 58.442 41.667 0.00 0.00 0.00 2.90
2352 2470 5.836024 ACTAAATGGGTGTTCTTCCTGTA 57.164 39.130 0.00 0.00 0.00 2.74
2353 2471 4.724279 ACTAAATGGGTGTTCTTCCTGT 57.276 40.909 0.00 0.00 0.00 4.00
2354 2472 6.405278 AAAACTAAATGGGTGTTCTTCCTG 57.595 37.500 0.00 0.00 0.00 3.86
2355 2473 7.255836 GCTAAAAACTAAATGGGTGTTCTTCCT 60.256 37.037 0.00 0.00 0.00 3.36
2356 2474 6.866770 GCTAAAAACTAAATGGGTGTTCTTCC 59.133 38.462 0.00 0.00 0.00 3.46
2357 2475 7.658261 AGCTAAAAACTAAATGGGTGTTCTTC 58.342 34.615 0.00 0.00 0.00 2.87
2358 2476 7.505923 AGAGCTAAAAACTAAATGGGTGTTCTT 59.494 33.333 0.00 0.00 0.00 2.52
2359 2477 7.004691 AGAGCTAAAAACTAAATGGGTGTTCT 58.995 34.615 0.00 0.00 0.00 3.01
2360 2478 7.084486 CAGAGCTAAAAACTAAATGGGTGTTC 58.916 38.462 0.00 0.00 0.00 3.18
2361 2479 6.549736 ACAGAGCTAAAAACTAAATGGGTGTT 59.450 34.615 0.00 0.00 0.00 3.32
2362 2480 6.068670 ACAGAGCTAAAAACTAAATGGGTGT 58.931 36.000 0.00 0.00 0.00 4.16
2363 2481 6.349363 GGACAGAGCTAAAAACTAAATGGGTG 60.349 42.308 0.00 0.00 0.00 4.61
2364 2482 5.710567 GGACAGAGCTAAAAACTAAATGGGT 59.289 40.000 0.00 0.00 0.00 4.51
2365 2483 5.946377 AGGACAGAGCTAAAAACTAAATGGG 59.054 40.000 0.00 0.00 0.00 4.00
2366 2484 7.362142 GGAAGGACAGAGCTAAAAACTAAATGG 60.362 40.741 0.00 0.00 0.00 3.16
2367 2485 7.362142 GGGAAGGACAGAGCTAAAAACTAAATG 60.362 40.741 0.00 0.00 0.00 2.32
2368 2486 6.659668 GGGAAGGACAGAGCTAAAAACTAAAT 59.340 38.462 0.00 0.00 0.00 1.40
2369 2487 6.002082 GGGAAGGACAGAGCTAAAAACTAAA 58.998 40.000 0.00 0.00 0.00 1.85
2370 2488 5.309806 AGGGAAGGACAGAGCTAAAAACTAA 59.690 40.000 0.00 0.00 0.00 2.24
2388 2506 0.609957 TGGCATTGTGCTGAGGGAAG 60.610 55.000 1.64 0.00 44.28 3.46
2389 2507 0.040058 ATGGCATTGTGCTGAGGGAA 59.960 50.000 0.00 0.00 44.28 3.97
2391 2509 0.968901 ACATGGCATTGTGCTGAGGG 60.969 55.000 0.00 0.00 44.28 4.30
2393 2511 1.170442 TGACATGGCATTGTGCTGAG 58.830 50.000 0.00 0.00 44.28 3.35
2395 2513 1.203758 ACATGACATGGCATTGTGCTG 59.796 47.619 12.64 3.26 44.28 4.41
2396 2514 1.552578 ACATGACATGGCATTGTGCT 58.447 45.000 12.64 0.00 44.28 4.40
2397 2515 3.720949 ATACATGACATGGCATTGTGC 57.279 42.857 12.64 0.00 44.08 4.57
2398 2516 4.340097 AGGAATACATGACATGGCATTGTG 59.660 41.667 12.64 4.99 33.60 3.33
2399 2517 4.539726 AGGAATACATGACATGGCATTGT 58.460 39.130 12.64 15.59 33.60 2.71
2400 2518 5.068067 TGAAGGAATACATGACATGGCATTG 59.932 40.000 12.64 10.26 33.60 2.82
2404 2522 3.004106 GCTGAAGGAATACATGACATGGC 59.996 47.826 19.39 5.45 33.60 4.40
2430 2548 4.808364 GCACCAAAACTTGCATGTAAGAAA 59.192 37.500 27.53 0.00 0.00 2.52
2431 2549 4.367450 GCACCAAAACTTGCATGTAAGAA 58.633 39.130 27.53 0.00 0.00 2.52
2434 2552 2.697751 AGGCACCAAAACTTGCATGTAA 59.302 40.909 5.56 0.00 0.00 2.41
2437 2555 1.868498 CAAGGCACCAAAACTTGCATG 59.132 47.619 0.00 0.00 35.70 4.06
2438 2556 1.485895 ACAAGGCACCAAAACTTGCAT 59.514 42.857 0.00 0.00 44.01 3.96
2440 2558 1.665169 CAACAAGGCACCAAAACTTGC 59.335 47.619 0.00 0.00 44.01 4.01
2475 2601 0.669619 TGAACAGCTGTGTGGCATTG 59.330 50.000 22.49 0.00 36.84 2.82
2477 2603 0.885879 CATGAACAGCTGTGTGGCAT 59.114 50.000 22.49 17.79 36.84 4.40
2483 2609 2.806608 AAAAGGCATGAACAGCTGTG 57.193 45.000 22.49 9.07 0.00 3.66
2501 2627 9.219603 CATGAACTGAATAGTAGTGAGGAAAAA 57.780 33.333 0.00 0.00 35.69 1.94
2502 2628 7.334421 GCATGAACTGAATAGTAGTGAGGAAAA 59.666 37.037 0.00 0.00 35.69 2.29
2503 2629 6.818644 GCATGAACTGAATAGTAGTGAGGAAA 59.181 38.462 0.00 0.00 35.69 3.13
2504 2630 6.341316 GCATGAACTGAATAGTAGTGAGGAA 58.659 40.000 0.00 0.00 35.69 3.36
2505 2631 5.163405 GGCATGAACTGAATAGTAGTGAGGA 60.163 44.000 0.00 0.00 35.69 3.71
2506 2632 5.053145 GGCATGAACTGAATAGTAGTGAGG 58.947 45.833 0.00 0.00 35.69 3.86
2507 2633 5.911752 AGGCATGAACTGAATAGTAGTGAG 58.088 41.667 0.00 0.00 35.69 3.51
2508 2634 5.939764 AGGCATGAACTGAATAGTAGTGA 57.060 39.130 0.00 0.00 35.69 3.41
2509 2635 6.992063 AAAGGCATGAACTGAATAGTAGTG 57.008 37.500 0.00 0.00 35.69 2.74
2510 2636 9.113838 CATAAAAGGCATGAACTGAATAGTAGT 57.886 33.333 0.00 0.00 35.69 2.73
2511 2637 9.330063 TCATAAAAGGCATGAACTGAATAGTAG 57.670 33.333 0.00 0.00 35.69 2.57
2512 2638 9.109393 GTCATAAAAGGCATGAACTGAATAGTA 57.891 33.333 0.00 0.00 35.69 1.82
2513 2639 7.831193 AGTCATAAAAGGCATGAACTGAATAGT 59.169 33.333 0.00 0.00 39.32 2.12
2514 2640 8.218338 AGTCATAAAAGGCATGAACTGAATAG 57.782 34.615 0.00 0.00 34.32 1.73
2515 2641 7.283127 GGAGTCATAAAAGGCATGAACTGAATA 59.717 37.037 0.00 0.00 34.32 1.75
2516 2642 6.096001 GGAGTCATAAAAGGCATGAACTGAAT 59.904 38.462 0.00 0.00 34.32 2.57
2517 2643 5.415701 GGAGTCATAAAAGGCATGAACTGAA 59.584 40.000 0.00 0.00 34.32 3.02
2532 2658 8.750515 TTCAAGAAATGCATATGGAGTCATAA 57.249 30.769 0.00 0.00 39.10 1.90
2575 2701 9.533831 AACAGAATCAAATAAGAAACTGGGTAT 57.466 29.630 0.00 0.00 32.79 2.73
2579 2705 9.533253 AAACAACAGAATCAAATAAGAAACTGG 57.467 29.630 0.00 0.00 32.79 4.00
2647 2773 3.885297 CTCCTGGACACAACAAATCAGTT 59.115 43.478 0.00 0.00 0.00 3.16
2669 2795 4.168760 GCTGAACATTATGTGAAGCAACC 58.831 43.478 20.61 0.00 38.65 3.77
2675 2801 6.037500 GCTATCACTGCTGAACATTATGTGAA 59.962 38.462 0.00 0.00 36.70 3.18
2677 2803 5.526479 AGCTATCACTGCTGAACATTATGTG 59.474 40.000 0.00 0.00 39.56 3.21
2706 2832 8.641499 ATTTCAAAACGAAGAGTAAATTGCAA 57.359 26.923 0.00 0.00 34.32 4.08
2721 2847 9.848172 CAGTTTTCTTCCAATTATTTCAAAACG 57.152 29.630 0.00 0.00 37.49 3.60
2763 2968 2.357034 GAAGCACCGAACGGCAGA 60.357 61.111 13.32 0.00 39.32 4.26
2767 2972 1.569493 CAACTGAAGCACCGAACGG 59.431 57.895 11.83 11.83 42.03 4.44
2770 2975 0.106708 AGAGCAACTGAAGCACCGAA 59.893 50.000 0.00 0.00 0.00 4.30
2771 2976 0.106708 AAGAGCAACTGAAGCACCGA 59.893 50.000 0.00 0.00 0.00 4.69
2772 2977 0.947244 AAAGAGCAACTGAAGCACCG 59.053 50.000 0.00 0.00 0.00 4.94
2773 2978 2.225467 AGAAAGAGCAACTGAAGCACC 58.775 47.619 0.00 0.00 0.00 5.01
2774 2979 6.917217 ATATAGAAAGAGCAACTGAAGCAC 57.083 37.500 0.00 0.00 0.00 4.40
2775 2980 8.040727 TGTAATATAGAAAGAGCAACTGAAGCA 58.959 33.333 0.00 0.00 0.00 3.91
2776 2981 8.425577 TGTAATATAGAAAGAGCAACTGAAGC 57.574 34.615 0.00 0.00 0.00 3.86
2797 3003 1.545582 GAAGCTTTGCAGGCCATGTAA 59.454 47.619 5.01 3.39 0.00 2.41
2803 3009 0.390735 CAATGGAAGCTTTGCAGGCC 60.391 55.000 0.00 0.00 33.40 5.19
2816 3022 5.848286 ATATGGTTGATAGCCTCAATGGA 57.152 39.130 2.94 0.00 45.36 3.41
2822 3028 6.942532 TTTCACAATATGGTTGATAGCCTC 57.057 37.500 0.33 0.00 0.00 4.70
2845 3051 2.356382 TCGCAACTCGTTTGGACAAATT 59.644 40.909 0.34 0.00 39.67 1.82
2846 3052 1.944024 TCGCAACTCGTTTGGACAAAT 59.056 42.857 0.34 0.00 39.67 2.32
2873 3079 2.741759 TGTAGATCACGCTTTGAGCA 57.258 45.000 0.00 0.00 43.63 4.26
2881 3087 6.563010 GCATCACTAATTCTTGTAGATCACGC 60.563 42.308 0.00 0.00 0.00 5.34
2947 3154 2.717639 AGTATGTGCCCACTTGATCC 57.282 50.000 0.00 0.00 0.00 3.36
2958 3170 4.083217 CCTCGAGATACCACTAGTATGTGC 60.083 50.000 15.71 0.00 41.94 4.57
2969 3181 4.800023 TCTTTGGATACCTCGAGATACCA 58.200 43.478 15.71 14.31 0.00 3.25
3010 3222 5.277058 GCAAAGTCAAGTTAGAGTGTGAGTG 60.277 44.000 0.00 0.00 29.26 3.51
3011 3223 4.811557 GCAAAGTCAAGTTAGAGTGTGAGT 59.188 41.667 0.00 0.00 29.26 3.41
3012 3224 5.053145 AGCAAAGTCAAGTTAGAGTGTGAG 58.947 41.667 0.00 0.00 29.26 3.51
3013 3225 5.023533 AGCAAAGTCAAGTTAGAGTGTGA 57.976 39.130 0.00 0.00 29.26 3.58
3014 3226 5.741388 AAGCAAAGTCAAGTTAGAGTGTG 57.259 39.130 0.00 0.00 30.75 3.82
3015 3227 5.648092 ACAAAGCAAAGTCAAGTTAGAGTGT 59.352 36.000 0.00 0.00 0.00 3.55
3052 3297 6.081049 TGAGTTGTTTCTACAAACGTTGTTG 58.919 36.000 0.00 0.00 45.33 3.33
3053 3298 6.243811 TGAGTTGTTTCTACAAACGTTGTT 57.756 33.333 0.00 0.00 45.33 2.83
3059 3304 6.413818 CGATTGGTTGAGTTGTTTCTACAAAC 59.586 38.462 0.00 0.00 45.33 2.93
3161 3415 3.536570 GGTATCAAGCTCTCCTGGAAAC 58.463 50.000 0.00 0.00 0.00 2.78
3167 3442 3.051940 TCATGGGTATCAAGCTCTCCT 57.948 47.619 0.00 0.00 0.00 3.69
3168 3443 3.845781 TTCATGGGTATCAAGCTCTCC 57.154 47.619 0.00 0.00 0.00 3.71
3169 3444 5.226194 AGATTCATGGGTATCAAGCTCTC 57.774 43.478 0.00 0.00 0.00 3.20
3170 3445 4.041444 GGAGATTCATGGGTATCAAGCTCT 59.959 45.833 7.50 0.00 0.00 4.09
3171 3446 4.202398 TGGAGATTCATGGGTATCAAGCTC 60.202 45.833 0.00 0.00 0.00 4.09
3172 3447 3.718434 TGGAGATTCATGGGTATCAAGCT 59.282 43.478 0.00 0.00 0.00 3.74
3173 3448 4.070716 CTGGAGATTCATGGGTATCAAGC 58.929 47.826 0.00 0.00 0.00 4.01
3174 3449 4.349048 TCCTGGAGATTCATGGGTATCAAG 59.651 45.833 0.00 0.00 0.00 3.02
3175 3450 4.306391 TCCTGGAGATTCATGGGTATCAA 58.694 43.478 0.00 0.00 0.00 2.57
3176 3451 3.906218 CTCCTGGAGATTCATGGGTATCA 59.094 47.826 19.13 0.00 0.00 2.15
3177 3452 3.307339 GCTCCTGGAGATTCATGGGTATC 60.307 52.174 27.53 0.66 0.00 2.24
3178 3453 2.641815 GCTCCTGGAGATTCATGGGTAT 59.358 50.000 27.53 0.00 0.00 2.73
3179 3454 2.050144 GCTCCTGGAGATTCATGGGTA 58.950 52.381 27.53 0.00 0.00 3.69
3180 3455 0.842635 GCTCCTGGAGATTCATGGGT 59.157 55.000 27.53 0.00 0.00 4.51
3181 3456 0.841961 TGCTCCTGGAGATTCATGGG 59.158 55.000 27.53 0.00 0.00 4.00
3182 3457 2.723322 TTGCTCCTGGAGATTCATGG 57.277 50.000 27.53 0.00 0.00 3.66
3183 3458 3.315470 CACATTGCTCCTGGAGATTCATG 59.685 47.826 27.53 20.94 0.00 3.07
3184 3459 3.552875 CACATTGCTCCTGGAGATTCAT 58.447 45.455 27.53 9.37 0.00 2.57
3212 3487 4.045104 GTCTGCTGTTATGGATACGACAG 58.955 47.826 0.00 2.44 43.38 3.51
3224 3499 2.265367 TGATCCAAGGGTCTGCTGTTA 58.735 47.619 0.43 0.00 0.00 2.41
3255 3555 0.527113 TTTGTTGGATGCAGATGCCG 59.473 50.000 1.72 0.00 41.18 5.69
3346 3676 2.554032 GCACTGTTACCATGAGCAAACT 59.446 45.455 0.00 0.00 0.00 2.66
3428 3805 3.698040 ACATTATGCTGAGAAAAGGGCAG 59.302 43.478 0.00 0.00 38.11 4.85
3431 3808 5.359009 ACATGACATTATGCTGAGAAAAGGG 59.641 40.000 0.00 0.00 0.00 3.95
3450 3827 4.164796 AGGCTGAAGGAATACATGACATGA 59.835 41.667 22.19 6.26 0.00 3.07
3474 3851 6.373186 AGGCACTAAAACTTGTACTGAAAC 57.627 37.500 0.00 0.00 36.02 2.78
3543 3927 4.284490 AGGCATGAACTGAGTAGTGAGAAA 59.716 41.667 0.00 0.00 37.19 2.52
3544 3928 3.834813 AGGCATGAACTGAGTAGTGAGAA 59.165 43.478 0.00 0.00 37.19 2.87
3545 3929 3.435275 AGGCATGAACTGAGTAGTGAGA 58.565 45.455 0.00 0.00 37.19 3.27
3546 3930 3.883830 AGGCATGAACTGAGTAGTGAG 57.116 47.619 0.00 0.00 37.19 3.51
3547 3931 4.623932 AAAGGCATGAACTGAGTAGTGA 57.376 40.909 0.00 0.00 37.19 3.41
3548 3932 6.183360 CCATAAAAGGCATGAACTGAGTAGTG 60.183 42.308 0.00 0.00 37.19 2.74
3550 3934 6.369059 CCATAAAAGGCATGAACTGAGTAG 57.631 41.667 0.00 0.00 0.00 2.57
3573 3961 8.915871 TTTTCTTCAGTAAATGCATATGAAGC 57.084 30.769 24.74 7.05 44.10 3.86
3601 3989 3.059352 AGTACAGAACCAGGCATGAAC 57.941 47.619 0.00 0.00 0.00 3.18
3606 3994 2.047061 ACAGAAGTACAGAACCAGGCA 58.953 47.619 0.00 0.00 0.00 4.75
3623 4781 5.413833 ACATTGAGGAATCTGCACTTTACAG 59.586 40.000 0.00 0.00 36.44 2.74
3698 4856 5.756833 TGACATACATGAGAGCAATAGCAAG 59.243 40.000 0.00 0.00 45.49 4.01
3733 4986 6.154445 CCATTATTCTGTTATTGCAGGCATC 58.846 40.000 0.00 0.00 37.12 3.91
3736 4989 5.520376 ACCATTATTCTGTTATTGCAGGC 57.480 39.130 0.00 0.00 37.12 4.85
3737 4990 9.071276 AGATTACCATTATTCTGTTATTGCAGG 57.929 33.333 0.00 0.00 37.12 4.85
3766 5019 2.045561 TCGTCCTTGGCAAAGAAACA 57.954 45.000 1.11 0.00 35.19 2.83
3774 5027 2.091541 GATCCAAATTCGTCCTTGGCA 58.908 47.619 7.12 0.00 34.68 4.92
3777 5030 3.064545 GCAGAGATCCAAATTCGTCCTTG 59.935 47.826 0.00 0.00 0.00 3.61
3794 5049 6.014242 TGTGGAATACATATAAGGGAGCAGAG 60.014 42.308 0.00 0.00 33.42 3.35
3859 5149 6.483974 TGAACCTAGCGAAATTTGTAACTTGA 59.516 34.615 0.00 0.00 0.00 3.02
3915 5206 4.471548 GATCTTACAGGCTGTAGGACCTA 58.528 47.826 33.33 17.34 40.88 3.08
3921 5212 4.835615 ACCATAGGATCTTACAGGCTGTAG 59.164 45.833 25.00 18.94 33.92 2.74
3935 5226 3.758554 GCACAGAACAAACACCATAGGAT 59.241 43.478 0.00 0.00 0.00 3.24
3954 5245 4.201822 GGAAAGAACGGAATATGACAGCAC 60.202 45.833 0.00 0.00 0.00 4.40
3968 5259 4.733405 GCAGTTTACACAAAGGAAAGAACG 59.267 41.667 0.00 0.00 0.00 3.95
3996 5288 0.533032 GAGGGAGAGGTCGACAAAGG 59.467 60.000 18.91 0.00 0.00 3.11
4001 5293 0.479378 ATAGGGAGGGAGAGGTCGAC 59.521 60.000 7.13 7.13 0.00 4.20
4002 5294 0.478942 CATAGGGAGGGAGAGGTCGA 59.521 60.000 0.00 0.00 0.00 4.20
4003 5295 1.182385 GCATAGGGAGGGAGAGGTCG 61.182 65.000 0.00 0.00 0.00 4.79
4047 5340 7.732025 TGAGAACAGAGGTAAATGTCTTAACA 58.268 34.615 0.00 0.00 40.38 2.41
4145 5467 4.141846 TGAACCAGCTAGTGAATCATCCTC 60.142 45.833 0.00 0.00 0.00 3.71
4175 5497 9.462606 TCAGTTCAAGTGACTATCTACAAGATA 57.537 33.333 0.00 0.00 36.20 1.98
4176 5498 8.354711 TCAGTTCAAGTGACTATCTACAAGAT 57.645 34.615 0.00 0.00 38.70 2.40
4179 5501 8.201464 TGTTTCAGTTCAAGTGACTATCTACAA 58.799 33.333 0.00 0.00 0.00 2.41
4180 5502 7.722363 TGTTTCAGTTCAAGTGACTATCTACA 58.278 34.615 0.00 0.00 0.00 2.74
4211 5533 3.451178 TGAGAACTAGGTACTCATTGGCC 59.549 47.826 0.00 0.00 41.75 5.36
4217 5539 8.190326 TGAAATTTCTGAGAACTAGGTACTCA 57.810 34.615 18.64 12.65 41.75 3.41
4223 5545 7.826252 TGAAGGATGAAATTTCTGAGAACTAGG 59.174 37.037 18.64 0.00 0.00 3.02
4244 5566 5.649831 GCCATAGCCCTATCTAAAATGAAGG 59.350 44.000 0.00 0.00 0.00 3.46
4329 5660 5.147162 GTTGAGACAATAAACCTCGCAAAG 58.853 41.667 0.00 0.00 0.00 2.77
4330 5661 4.023536 GGTTGAGACAATAAACCTCGCAAA 60.024 41.667 0.00 0.00 40.22 3.68
4334 5665 5.643777 AGAATGGTTGAGACAATAAACCTCG 59.356 40.000 5.49 0.00 43.16 4.63
4370 5701 3.743911 TCAATACGAGCAAGCGAGAAAAA 59.256 39.130 0.00 0.00 34.83 1.94
4377 5712 2.873170 TTGTTCAATACGAGCAAGCG 57.127 45.000 0.00 0.00 39.62 4.68
4420 5755 7.068692 AGTATGTGCCTTTCGTTTTATGTAC 57.931 36.000 0.00 0.00 0.00 2.90
4491 5826 5.942961 TCCAAACCTTAATGTTAGGTGTCA 58.057 37.500 0.00 0.00 45.17 3.58
4508 5843 3.873805 GCCACAGCTTTCTCCAAAC 57.126 52.632 0.00 0.00 35.50 2.93
4521 5856 4.286707 TCTATTAGCCTAACTGAGCCACA 58.713 43.478 0.00 0.00 0.00 4.17
4564 5899 8.866970 AAAATGAGTGATTAAATGGGCAAAAT 57.133 26.923 0.00 0.00 0.00 1.82
4573 5908 7.826690 ACGCCAGTTAAAATGAGTGATTAAAT 58.173 30.769 0.00 0.00 0.00 1.40
4594 5929 0.955428 TTCATGTCCTGCAAGACGCC 60.955 55.000 10.77 0.00 41.33 5.68
4669 6004 1.779569 AACGACGTGCCTCAGTTAAG 58.220 50.000 0.00 0.00 0.00 1.85
4940 6296 6.612306 CATATGCCATGTCAGATGATCAAAG 58.388 40.000 5.44 0.00 37.75 2.77
4944 6300 4.262617 AGCATATGCCATGTCAGATGATC 58.737 43.478 23.96 0.00 43.38 2.92
4999 6355 2.158813 TGCAGTAATACCAAGCTAGGCC 60.159 50.000 0.00 0.00 0.00 5.19
5013 6373 7.878644 TGTGTTTATACAACAGGTATGCAGTAA 59.121 33.333 0.00 0.00 42.63 2.24
5017 6377 8.794335 TTATGTGTTTATACAACAGGTATGCA 57.206 30.769 0.00 0.00 42.63 3.96
5037 6397 6.841601 AGCCAGACCATATGTTGTATTATGT 58.158 36.000 1.24 0.00 0.00 2.29
5044 6404 3.885297 GCAATAGCCAGACCATATGTTGT 59.115 43.478 1.24 0.00 33.58 3.32
5054 6414 2.019249 TCAATGCAGCAATAGCCAGAC 58.981 47.619 0.00 0.00 43.56 3.51
5059 6439 7.440255 AGGAAAAATTATCAATGCAGCAATAGC 59.560 33.333 0.00 0.00 42.56 2.97
5066 6446 7.098477 TGAACCAGGAAAAATTATCAATGCAG 58.902 34.615 0.00 0.00 0.00 4.41
5079 6459 9.537852 TCTTACTACTACTATGAACCAGGAAAA 57.462 33.333 0.00 0.00 0.00 2.29
5080 6460 9.186837 CTCTTACTACTACTATGAACCAGGAAA 57.813 37.037 0.00 0.00 0.00 3.13
5081 6461 7.284944 GCTCTTACTACTACTATGAACCAGGAA 59.715 40.741 0.00 0.00 0.00 3.36
5083 6463 6.546403 TGCTCTTACTACTACTATGAACCAGG 59.454 42.308 0.00 0.00 0.00 4.45
5103 6539 6.122277 TGCTACTAGCCAAAAATATTGCTCT 58.878 36.000 5.58 0.00 41.51 4.09
5172 6608 9.213799 ACTGACTTCAAAAATCAGAGTATTCTC 57.786 33.333 7.44 0.00 42.07 2.87
5173 6609 9.213799 GACTGACTTCAAAAATCAGAGTATTCT 57.786 33.333 7.44 0.00 42.07 2.40
5174 6610 8.165428 CGACTGACTTCAAAAATCAGAGTATTC 58.835 37.037 7.44 0.00 42.07 1.75
5175 6611 7.360438 GCGACTGACTTCAAAAATCAGAGTATT 60.360 37.037 7.44 0.00 42.07 1.89
5176 6612 6.091441 GCGACTGACTTCAAAAATCAGAGTAT 59.909 38.462 7.44 0.00 42.07 2.12
5177 6613 5.405571 GCGACTGACTTCAAAAATCAGAGTA 59.594 40.000 7.44 0.00 42.07 2.59
5178 6614 4.212214 GCGACTGACTTCAAAAATCAGAGT 59.788 41.667 7.44 0.00 42.07 3.24
5254 6690 6.980051 ATAGGTTAGGTTCTTTTTACTGCG 57.020 37.500 0.00 0.00 0.00 5.18
5268 6704 8.902540 TGCACAACAAATAGATATAGGTTAGG 57.097 34.615 0.00 0.00 0.00 2.69
5286 6723 0.040157 TCATTCGCTTGCTGCACAAC 60.040 50.000 0.00 0.00 43.06 3.32
5287 6724 0.040157 GTCATTCGCTTGCTGCACAA 60.040 50.000 0.00 0.00 43.06 3.33
5288 6725 1.575922 GTCATTCGCTTGCTGCACA 59.424 52.632 0.00 0.00 43.06 4.57
5495 6932 2.169832 TGTTCCTGACTGCACTTAGC 57.830 50.000 0.00 0.00 45.96 3.09
5555 6992 1.767088 TCGAGGTCTCCGAGGATTCTA 59.233 52.381 0.00 0.00 0.00 2.10
5600 7037 4.828387 AGAATGTACTCTCTTATCCGGGAC 59.172 45.833 0.00 0.00 0.00 4.46
5665 7102 2.094752 TCGACGAATGCAAGTCAGATCA 60.095 45.455 16.78 0.00 37.23 2.92
5668 7105 2.262211 CATCGACGAATGCAAGTCAGA 58.738 47.619 16.78 14.60 37.23 3.27
5670 7107 1.726248 CACATCGACGAATGCAAGTCA 59.274 47.619 16.78 7.58 37.23 3.41
5671 7108 1.061131 CCACATCGACGAATGCAAGTC 59.939 52.381 0.00 9.45 0.00 3.01
5672 7109 1.078709 CCACATCGACGAATGCAAGT 58.921 50.000 0.00 0.00 0.00 3.16
5673 7110 0.374758 CCCACATCGACGAATGCAAG 59.625 55.000 0.00 0.00 0.00 4.01
5694 7135 2.511600 ACGGCGCCTCAATGTAGC 60.512 61.111 26.68 0.00 0.00 3.58
5810 7255 2.362717 GGTCTTAGATCACCCCTCTTCG 59.637 54.545 0.00 0.00 0.00 3.79
5873 7320 3.879295 CTGAGAGGAGACAGAGATGAGAC 59.121 52.174 0.00 0.00 36.38 3.36
5874 7321 3.523157 ACTGAGAGGAGACAGAGATGAGA 59.477 47.826 0.00 0.00 37.54 3.27
5876 7323 5.131809 TGATACTGAGAGGAGACAGAGATGA 59.868 44.000 0.00 0.00 37.54 2.92
5915 7364 5.359194 AGTGATCTAAAACATGACCGGAT 57.641 39.130 9.46 0.00 0.00 4.18
5966 7415 1.947146 TCACGCGGTGTTCTTGACG 60.947 57.895 12.47 0.00 34.79 4.35
6039 7488 3.818773 ACATGTACAACTGCTACCCAAAC 59.181 43.478 0.00 0.00 0.00 2.93
6065 7516 6.639632 ATCCACCATAAATCATAAGCACAC 57.360 37.500 0.00 0.00 0.00 3.82
6080 7531 3.308035 ACAGCATGATGAATCCACCAT 57.692 42.857 19.60 0.00 39.69 3.55
6096 7547 1.009829 GCTACACACAGGCATACAGC 58.990 55.000 0.00 0.00 44.65 4.40
6109 7564 3.191162 TGCATGGAAGAAATGTGCTACAC 59.809 43.478 0.00 0.00 36.78 2.90
6158 7614 7.220030 ACACAGATGAGCAATAACCTTATAGG 58.780 38.462 0.00 0.00 42.49 2.57
6172 7628 2.084610 TGCACACTACACAGATGAGC 57.915 50.000 0.00 0.00 0.00 4.26
6175 7631 3.076621 ACCAATGCACACTACACAGATG 58.923 45.455 0.00 0.00 0.00 2.90
6185 7641 3.184986 GCTCAAAAATCACCAATGCACAC 59.815 43.478 0.00 0.00 0.00 3.82
6186 7642 3.391965 GCTCAAAAATCACCAATGCACA 58.608 40.909 0.00 0.00 0.00 4.57
6187 7643 2.738314 GGCTCAAAAATCACCAATGCAC 59.262 45.455 0.00 0.00 0.00 4.57
6201 7657 0.032403 GCACTGCAATGTGGCTCAAA 59.968 50.000 8.06 0.00 38.31 2.69
6202 7658 0.824595 AGCACTGCAATGTGGCTCAA 60.825 50.000 3.30 0.00 38.31 3.02
6203 7659 0.036590 TAGCACTGCAATGTGGCTCA 59.963 50.000 3.30 0.00 38.31 4.26
6204 7660 0.731417 CTAGCACTGCAATGTGGCTC 59.269 55.000 3.30 0.00 38.31 4.70
6205 7661 0.679002 CCTAGCACTGCAATGTGGCT 60.679 55.000 3.30 7.85 38.31 4.75
6228 7686 6.258160 GTCATACAACAGACATGGCAATAAC 58.742 40.000 0.00 0.00 34.93 1.89
6229 7687 5.356751 GGTCATACAACAGACATGGCAATAA 59.643 40.000 0.00 0.00 36.50 1.40
6230 7688 4.881273 GGTCATACAACAGACATGGCAATA 59.119 41.667 0.00 0.00 36.50 1.90
6231 7689 3.696051 GGTCATACAACAGACATGGCAAT 59.304 43.478 0.00 0.00 36.50 3.56
6241 7701 7.552458 TGCAGTTATAATGGTCATACAACAG 57.448 36.000 0.00 0.00 0.00 3.16
6259 7719 8.629158 TCTGTCAGTTTGTTTATTTATGCAGTT 58.371 29.630 0.00 0.00 0.00 3.16
6278 7745 8.777865 TTTCACTACCTTCATTTATCTGTCAG 57.222 34.615 0.00 0.00 0.00 3.51
6291 7758 8.258708 ACACCATCTTACTATTTCACTACCTTC 58.741 37.037 0.00 0.00 0.00 3.46
6298 7773 6.489675 CATGCACACCATCTTACTATTTCAC 58.510 40.000 0.00 0.00 29.71 3.18
6300 7775 5.066375 TGCATGCACACCATCTTACTATTTC 59.934 40.000 18.46 0.00 29.71 2.17
6314 7789 4.096833 TCCTCATTTTCTATGCATGCACAC 59.903 41.667 25.37 0.00 0.00 3.82
6316 7791 4.906065 TCCTCATTTTCTATGCATGCAC 57.094 40.909 25.37 0.00 0.00 4.57
6374 7874 1.339342 TGATGGACTGTCACTGCATGG 60.339 52.381 10.38 0.00 0.00 3.66
6446 7947 9.601810 AGGGGAAAGAGAAATGTTTATTTAGTT 57.398 29.630 0.00 0.00 36.66 2.24
6447 7948 9.244292 GAGGGGAAAGAGAAATGTTTATTTAGT 57.756 33.333 0.00 0.00 36.66 2.24
6474 7975 2.308866 GAGAGAGAGAGATAGGAGGGGG 59.691 59.091 0.00 0.00 0.00 5.40
6479 7980 5.970289 AGAGAGAGAGAGAGAGAGATAGGA 58.030 45.833 0.00 0.00 0.00 2.94
6596 8134 1.381735 GCAATGGGAGGGGGAAAGG 60.382 63.158 0.00 0.00 0.00 3.11


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.