Multiple sequence alignment - TraesCS5B01G536700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G536700 chr5B 100.000 2618 0 0 1 2618 692677719 692680336 0.000000e+00 4835.0
1 TraesCS5B01G536700 chr5B 83.148 629 53 27 1009 1622 692691204 692691794 2.310000e-145 525.0
2 TraesCS5B01G536700 chr5B 87.402 127 7 4 1032 1149 692648861 692648987 1.260000e-28 137.0
3 TraesCS5B01G536700 chr5B 85.714 112 11 3 590 697 692648481 692648591 2.130000e-21 113.0
4 TraesCS5B01G536700 chr5B 97.368 38 1 0 1726 1763 692635794 692635831 6.050000e-07 65.8
5 TraesCS5B01G536700 chr5D 81.238 1535 140 74 539 1999 548460102 548461562 0.000000e+00 1103.0
6 TraesCS5B01G536700 chr5D 79.983 1179 128 65 517 1645 548479187 548480307 0.000000e+00 771.0
7 TraesCS5B01G536700 chr5D 77.816 293 23 14 1333 1624 548374348 548374599 2.720000e-30 143.0
8 TraesCS5B01G536700 chr5D 97.368 38 1 0 1726 1763 548368544 548368581 6.050000e-07 65.8
9 TraesCS5B01G536700 chr5D 97.059 34 1 0 1726 1759 548374849 548374882 1.010000e-04 58.4
10 TraesCS5B01G536700 chr4A 89.633 762 53 11 1009 1763 619333718 619334460 0.000000e+00 946.0
11 TraesCS5B01G536700 chr4A 82.803 628 60 22 1009 1622 619370065 619370658 3.860000e-143 518.0
12 TraesCS5B01G536700 chr4A 79.545 616 70 32 1026 1621 619312346 619312925 3.160000e-104 388.0
13 TraesCS5B01G536700 chr4A 88.017 242 21 2 1759 1999 619334532 619334766 1.980000e-71 279.0
14 TraesCS5B01G536700 chr4A 87.983 233 21 3 47 276 619332714 619332942 4.290000e-68 268.0
15 TraesCS5B01G536700 chr4A 87.766 188 21 2 2028 2214 619334759 619334945 4.390000e-53 219.0
16 TraesCS5B01G536700 chr4A 81.818 132 22 2 2145 2275 66762066 66761936 2.750000e-20 110.0
17 TraesCS5B01G536700 chr4A 81.061 132 23 2 2145 2275 66772483 66772353 1.280000e-18 104.0
18 TraesCS5B01G536700 chr4A 81.818 121 20 2 2146 2264 615953986 615953866 1.660000e-17 100.0
19 TraesCS5B01G536700 chr4A 91.304 46 4 0 1 46 590272092 590272047 2.180000e-06 63.9
20 TraesCS5B01G536700 chr1B 82.911 158 25 2 2126 2282 437601016 437601172 9.770000e-30 141.0
21 TraesCS5B01G536700 chr7D 83.217 143 22 2 2140 2280 152649410 152649268 2.110000e-26 130.0
22 TraesCS5B01G536700 chr1D 81.013 158 28 2 2126 2282 325485813 325485969 9.840000e-25 124.0
23 TraesCS5B01G536700 chr1D 82.203 118 19 2 2145 2261 361359179 361359295 1.660000e-17 100.0
24 TraesCS5B01G536700 chr1D 93.617 47 2 1 1 46 440084916 440084962 4.680000e-08 69.4
25 TraesCS5B01G536700 chr2D 78.344 157 24 9 2129 2280 594646010 594646161 2.770000e-15 93.5
26 TraesCS5B01G536700 chr2D 100.000 32 0 0 15 46 636481188 636481157 2.810000e-05 60.2
27 TraesCS5B01G536700 chr2D 96.875 32 1 0 15 46 567633975 567633944 1.000000e-03 54.7
28 TraesCS5B01G536700 chr7B 97.872 47 1 0 1 47 23662757 23662803 6.010000e-12 82.4
29 TraesCS5B01G536700 chr3D 96.000 50 2 0 1 50 31711974 31711925 6.010000e-12 82.4
30 TraesCS5B01G536700 chr1A 97.826 46 1 0 1 46 478619912 478619957 2.160000e-11 80.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G536700 chr5B 692677719 692680336 2617 False 4835 4835 100.00000 1 2618 1 chr5B.!!$F2 2617
1 TraesCS5B01G536700 chr5B 692691204 692691794 590 False 525 525 83.14800 1009 1622 1 chr5B.!!$F3 613
2 TraesCS5B01G536700 chr5D 548460102 548461562 1460 False 1103 1103 81.23800 539 1999 1 chr5D.!!$F2 1460
3 TraesCS5B01G536700 chr5D 548479187 548480307 1120 False 771 771 79.98300 517 1645 1 chr5D.!!$F3 1128
4 TraesCS5B01G536700 chr4A 619370065 619370658 593 False 518 518 82.80300 1009 1622 1 chr4A.!!$F2 613
5 TraesCS5B01G536700 chr4A 619332714 619334945 2231 False 428 946 88.34975 47 2214 4 chr4A.!!$F3 2167
6 TraesCS5B01G536700 chr4A 619312346 619312925 579 False 388 388 79.54500 1026 1621 1 chr4A.!!$F1 595

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
966 1116 0.032952 TGTCTCACCTTGCACGGTAC 59.967 55.0 15.46 10.51 34.94 3.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2534 2870 0.10412 TCGTGGCGAGGTATCATTGG 59.896 55.0 0.0 0.0 0.0 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.022940 TTTTGATTTCGCGTCCCCA 57.977 47.368 5.77 0.00 0.00 4.96
19 20 1.319541 TTTTGATTTCGCGTCCCCAA 58.680 45.000 5.77 4.34 0.00 4.12
20 21 1.319541 TTTGATTTCGCGTCCCCAAA 58.680 45.000 5.77 10.32 0.00 3.28
21 22 1.540267 TTGATTTCGCGTCCCCAAAT 58.460 45.000 5.77 3.95 0.00 2.32
22 23 0.808125 TGATTTCGCGTCCCCAAATG 59.192 50.000 5.77 0.00 0.00 2.32
23 24 0.808755 GATTTCGCGTCCCCAAATGT 59.191 50.000 5.77 0.00 0.00 2.71
24 25 0.525761 ATTTCGCGTCCCCAAATGTG 59.474 50.000 5.77 0.00 0.00 3.21
25 26 1.519751 TTTCGCGTCCCCAAATGTGG 61.520 55.000 5.77 0.00 45.53 4.17
26 27 2.671619 CGCGTCCCCAAATGTGGT 60.672 61.111 0.00 0.00 44.30 4.16
27 28 2.961768 GCGTCCCCAAATGTGGTG 59.038 61.111 0.00 0.00 44.30 4.17
28 29 1.602323 GCGTCCCCAAATGTGGTGA 60.602 57.895 0.00 0.00 44.30 4.02
29 30 0.965363 GCGTCCCCAAATGTGGTGAT 60.965 55.000 0.00 0.00 44.30 3.06
30 31 1.544724 CGTCCCCAAATGTGGTGATT 58.455 50.000 0.00 0.00 44.30 2.57
31 32 1.892474 CGTCCCCAAATGTGGTGATTT 59.108 47.619 0.00 0.00 44.30 2.17
32 33 2.298729 CGTCCCCAAATGTGGTGATTTT 59.701 45.455 0.00 0.00 44.30 1.82
33 34 3.244044 CGTCCCCAAATGTGGTGATTTTT 60.244 43.478 0.00 0.00 44.30 1.94
67 68 0.684153 ACATATGCAGGTGGTTGGGC 60.684 55.000 1.58 0.00 0.00 5.36
82 83 2.125106 GGCTGGCCACTCGTTAGG 60.125 66.667 0.00 0.00 35.81 2.69
96 97 2.304761 TCGTTAGGCTCACCAAAATCCT 59.695 45.455 0.00 0.00 39.06 3.24
97 98 2.678336 CGTTAGGCTCACCAAAATCCTC 59.322 50.000 0.00 0.00 39.06 3.71
116 117 3.243975 CCTCCCCATTATCAAATTGCTGC 60.244 47.826 0.00 0.00 0.00 5.25
146 147 9.015367 AGATTTCATTTGGATGAGATGATGATC 57.985 33.333 0.00 0.00 42.90 2.92
150 151 4.532314 TTGGATGAGATGATGATCGAGG 57.468 45.455 0.00 0.00 33.34 4.63
152 153 3.899980 TGGATGAGATGATGATCGAGGTT 59.100 43.478 0.00 0.00 33.34 3.50
163 164 2.159382 GATCGAGGTTGCCCTTTTTCA 58.841 47.619 0.00 0.00 42.86 2.69
166 167 3.757270 TCGAGGTTGCCCTTTTTCATTA 58.243 40.909 0.00 0.00 42.86 1.90
169 170 5.102313 CGAGGTTGCCCTTTTTCATTATTC 58.898 41.667 0.00 0.00 42.86 1.75
170 171 5.336372 CGAGGTTGCCCTTTTTCATTATTCA 60.336 40.000 0.00 0.00 42.86 2.57
171 172 5.793817 AGGTTGCCCTTTTTCATTATTCAC 58.206 37.500 0.00 0.00 38.13 3.18
203 204 4.525912 AAATAAGGTCAAAAGCAGGCAG 57.474 40.909 0.00 0.00 0.00 4.85
215 216 1.028130 GCAGGCAGGCTTATTTCCTC 58.972 55.000 0.00 0.00 0.00 3.71
218 222 3.685550 GCAGGCAGGCTTATTTCCTCTTA 60.686 47.826 0.00 0.00 0.00 2.10
267 271 3.857854 CTGCATGACGCGTCCAGC 61.858 66.667 32.91 32.91 46.97 4.85
285 289 2.404789 GCATGAACGCGGGACATG 59.595 61.111 25.99 25.99 42.60 3.21
286 290 2.404789 CATGAACGCGGGACATGC 59.595 61.111 21.81 0.00 35.72 4.06
298 302 2.789409 GGACATGCCCTGTTACTCTT 57.211 50.000 0.00 0.00 38.54 2.85
299 303 2.633488 GGACATGCCCTGTTACTCTTC 58.367 52.381 0.00 0.00 38.54 2.87
300 304 2.633488 GACATGCCCTGTTACTCTTCC 58.367 52.381 0.00 0.00 38.54 3.46
301 305 1.985159 ACATGCCCTGTTACTCTTCCA 59.015 47.619 0.00 0.00 32.90 3.53
302 306 2.026822 ACATGCCCTGTTACTCTTCCAG 60.027 50.000 0.00 0.00 32.90 3.86
303 307 2.024176 TGCCCTGTTACTCTTCCAGA 57.976 50.000 0.00 0.00 0.00 3.86
304 308 2.334977 TGCCCTGTTACTCTTCCAGAA 58.665 47.619 0.00 0.00 0.00 3.02
305 309 2.708861 TGCCCTGTTACTCTTCCAGAAA 59.291 45.455 0.00 0.00 0.00 2.52
306 310 3.075148 GCCCTGTTACTCTTCCAGAAAC 58.925 50.000 0.00 0.00 0.00 2.78
307 311 3.676093 CCCTGTTACTCTTCCAGAAACC 58.324 50.000 0.00 0.00 0.00 3.27
308 312 3.072476 CCCTGTTACTCTTCCAGAAACCA 59.928 47.826 0.00 0.00 0.00 3.67
309 313 4.445735 CCCTGTTACTCTTCCAGAAACCAA 60.446 45.833 0.00 0.00 0.00 3.67
310 314 4.515567 CCTGTTACTCTTCCAGAAACCAAC 59.484 45.833 0.00 0.00 0.00 3.77
311 315 4.457466 TGTTACTCTTCCAGAAACCAACC 58.543 43.478 0.00 0.00 0.00 3.77
312 316 2.658807 ACTCTTCCAGAAACCAACCC 57.341 50.000 0.00 0.00 0.00 4.11
313 317 1.850345 ACTCTTCCAGAAACCAACCCA 59.150 47.619 0.00 0.00 0.00 4.51
314 318 2.243736 ACTCTTCCAGAAACCAACCCAA 59.756 45.455 0.00 0.00 0.00 4.12
315 319 2.623416 CTCTTCCAGAAACCAACCCAAC 59.377 50.000 0.00 0.00 0.00 3.77
316 320 1.686587 CTTCCAGAAACCAACCCAACC 59.313 52.381 0.00 0.00 0.00 3.77
317 321 0.105913 TCCAGAAACCAACCCAACCC 60.106 55.000 0.00 0.00 0.00 4.11
318 322 0.397816 CCAGAAACCAACCCAACCCA 60.398 55.000 0.00 0.00 0.00 4.51
319 323 1.490574 CAGAAACCAACCCAACCCAA 58.509 50.000 0.00 0.00 0.00 4.12
320 324 1.834263 CAGAAACCAACCCAACCCAAA 59.166 47.619 0.00 0.00 0.00 3.28
321 325 2.115427 AGAAACCAACCCAACCCAAAG 58.885 47.619 0.00 0.00 0.00 2.77
322 326 2.112190 GAAACCAACCCAACCCAAAGA 58.888 47.619 0.00 0.00 0.00 2.52
323 327 2.487746 AACCAACCCAACCCAAAGAT 57.512 45.000 0.00 0.00 0.00 2.40
324 328 1.715785 ACCAACCCAACCCAAAGATG 58.284 50.000 0.00 0.00 0.00 2.90
325 329 0.321346 CCAACCCAACCCAAAGATGC 59.679 55.000 0.00 0.00 0.00 3.91
326 330 1.047002 CAACCCAACCCAAAGATGCA 58.953 50.000 0.00 0.00 0.00 3.96
327 331 1.624813 CAACCCAACCCAAAGATGCAT 59.375 47.619 0.00 0.00 0.00 3.96
328 332 1.269012 ACCCAACCCAAAGATGCATG 58.731 50.000 2.46 0.00 0.00 4.06
329 333 0.108041 CCCAACCCAAAGATGCATGC 60.108 55.000 11.82 11.82 0.00 4.06
334 338 2.250031 ACCCAAAGATGCATGCTTCAA 58.750 42.857 29.04 7.12 0.00 2.69
337 341 3.869246 CCCAAAGATGCATGCTTCAATTC 59.131 43.478 29.04 12.77 0.00 2.17
343 347 6.374565 AGATGCATGCTTCAATTCTTCTAC 57.625 37.500 29.04 4.73 0.00 2.59
351 355 5.864474 TGCTTCAATTCTTCTACGAAGACTC 59.136 40.000 5.85 0.00 36.08 3.36
354 358 6.576662 TCAATTCTTCTACGAAGACTCTGT 57.423 37.500 5.85 0.00 0.00 3.41
365 369 4.867847 ACTCTGTTAGTCCGGGCT 57.132 55.556 15.76 15.76 30.33 5.19
366 370 2.581074 ACTCTGTTAGTCCGGGCTC 58.419 57.895 14.54 0.00 30.33 4.70
367 371 0.971447 ACTCTGTTAGTCCGGGCTCC 60.971 60.000 14.54 5.02 30.33 4.70
369 373 3.718210 CTGTTAGTCCGGGCTCCGC 62.718 68.421 14.54 4.41 46.86 5.54
370 374 4.867599 GTTAGTCCGGGCTCCGCG 62.868 72.222 14.54 0.00 46.86 6.46
372 376 4.889112 TAGTCCGGGCTCCGCGAT 62.889 66.667 14.54 0.00 46.86 4.58
373 377 2.963928 TTAGTCCGGGCTCCGCGATA 62.964 60.000 14.54 0.00 46.86 2.92
374 378 2.963928 TAGTCCGGGCTCCGCGATAA 62.964 60.000 14.54 0.00 46.86 1.75
375 379 2.915659 TCCGGGCTCCGCGATAAT 60.916 61.111 8.23 0.00 46.86 1.28
376 380 2.738521 CCGGGCTCCGCGATAATG 60.739 66.667 8.23 0.00 46.86 1.90
377 381 3.414700 CGGGCTCCGCGATAATGC 61.415 66.667 8.23 3.81 41.17 3.56
378 382 2.031163 GGGCTCCGCGATAATGCT 59.969 61.111 8.23 0.00 0.00 3.79
379 383 1.292223 GGGCTCCGCGATAATGCTA 59.708 57.895 8.23 0.00 0.00 3.49
380 384 0.108138 GGGCTCCGCGATAATGCTAT 60.108 55.000 8.23 0.00 0.00 2.97
381 385 1.281899 GGCTCCGCGATAATGCTATC 58.718 55.000 8.23 0.00 0.00 2.08
414 418 2.032799 TCCGCGATAATTTTGGATGTGC 59.967 45.455 8.23 0.00 0.00 4.57
415 419 2.223456 CCGCGATAATTTTGGATGTGCA 60.223 45.455 8.23 0.00 0.00 4.57
417 421 3.115554 GCGATAATTTTGGATGTGCACC 58.884 45.455 15.69 0.00 0.00 5.01
418 422 3.705604 CGATAATTTTGGATGTGCACCC 58.294 45.455 15.69 9.94 0.00 4.61
419 423 3.381272 CGATAATTTTGGATGTGCACCCT 59.619 43.478 15.69 0.70 0.00 4.34
421 425 1.176527 ATTTTGGATGTGCACCCTCG 58.823 50.000 15.69 0.00 0.00 4.63
422 426 0.109532 TTTTGGATGTGCACCCTCGA 59.890 50.000 15.69 5.75 0.00 4.04
423 427 0.327924 TTTGGATGTGCACCCTCGAT 59.672 50.000 15.69 0.00 0.00 3.59
424 428 0.107703 TTGGATGTGCACCCTCGATC 60.108 55.000 15.69 9.92 0.00 3.69
425 429 1.264045 TGGATGTGCACCCTCGATCA 61.264 55.000 15.69 2.49 0.00 2.92
447 452 1.448717 GCAGAGGCCGGAAGAGTTC 60.449 63.158 5.05 0.00 0.00 3.01
485 490 5.810080 AAATAAAACCATGACCCGGAAAA 57.190 34.783 0.73 0.00 0.00 2.29
488 493 2.375014 AACCATGACCCGGAAAAACT 57.625 45.000 0.73 0.00 0.00 2.66
504 519 2.234300 AACTTACTCCCACACACACG 57.766 50.000 0.00 0.00 0.00 4.49
508 523 2.686956 TACTCCCACACACACGCACG 62.687 60.000 0.00 0.00 0.00 5.34
512 527 4.918060 CACACACACGCACGCACG 62.918 66.667 0.00 0.00 39.50 5.34
547 562 3.694538 GCACCCGCCCAAAAGCAT 61.695 61.111 0.00 0.00 0.00 3.79
548 563 2.262292 CACCCGCCCAAAAGCATG 59.738 61.111 0.00 0.00 0.00 4.06
549 564 2.996734 ACCCGCCCAAAAGCATGG 60.997 61.111 0.00 0.00 40.35 3.66
576 591 4.683781 CACGACAAAGAGAAAAGAGGAGAG 59.316 45.833 0.00 0.00 0.00 3.20
581 596 5.604650 ACAAAGAGAAAAGAGGAGAGGAGAA 59.395 40.000 0.00 0.00 0.00 2.87
585 600 5.127031 AGAGAAAAGAGGAGAGGAGAAATCG 59.873 44.000 0.00 0.00 0.00 3.34
605 626 1.081892 CTGTGTGCTGCATCCACTAC 58.918 55.000 19.81 12.81 34.38 2.73
607 628 1.026718 GTGTGCTGCATCCACTACCC 61.027 60.000 5.27 0.00 34.38 3.69
626 647 1.574134 CAAATGATGGCGCCAAATCC 58.426 50.000 36.33 22.21 0.00 3.01
627 648 1.137479 CAAATGATGGCGCCAAATCCT 59.863 47.619 36.33 17.84 0.00 3.24
628 649 2.361757 CAAATGATGGCGCCAAATCCTA 59.638 45.455 36.33 12.97 0.00 2.94
629 650 2.363306 ATGATGGCGCCAAATCCTAA 57.637 45.000 36.33 10.43 0.00 2.69
637 658 2.374184 CGCCAAATCCTAATCACCCAA 58.626 47.619 0.00 0.00 0.00 4.12
709 747 2.079925 CACCAGCAAGTAGAGAAAGGC 58.920 52.381 0.00 0.00 0.00 4.35
717 755 0.696501 GTAGAGAAAGGCAACCCCCA 59.303 55.000 0.00 0.00 37.17 4.96
718 756 1.285078 GTAGAGAAAGGCAACCCCCAT 59.715 52.381 0.00 0.00 37.17 4.00
720 758 2.217776 AGAGAAAGGCAACCCCCATAT 58.782 47.619 0.00 0.00 37.17 1.78
726 767 5.970021 AGAAAGGCAACCCCCATATAAAAAT 59.030 36.000 0.00 0.00 37.17 1.82
740 781 8.296713 CCCATATAAAAATCAATTAGTCCACGG 58.703 37.037 0.00 0.00 0.00 4.94
746 787 5.614324 AATCAATTAGTCCACGGAGATCA 57.386 39.130 0.00 0.00 0.00 2.92
749 790 5.359756 TCAATTAGTCCACGGAGATCATTG 58.640 41.667 0.00 0.00 0.00 2.82
756 797 2.547211 CCACGGAGATCATTGCTGATTC 59.453 50.000 0.00 0.00 42.27 2.52
761 802 4.389382 CGGAGATCATTGCTGATTCATCTC 59.611 45.833 0.00 0.00 42.27 2.75
762 803 4.696402 GGAGATCATTGCTGATTCATCTCC 59.304 45.833 12.23 12.23 42.46 3.71
763 804 5.306114 AGATCATTGCTGATTCATCTCCA 57.694 39.130 0.00 0.00 42.27 3.86
764 805 5.691896 AGATCATTGCTGATTCATCTCCAA 58.308 37.500 0.00 0.00 42.27 3.53
765 806 6.307776 AGATCATTGCTGATTCATCTCCAAT 58.692 36.000 0.00 0.00 42.27 3.16
766 807 6.778069 AGATCATTGCTGATTCATCTCCAATT 59.222 34.615 0.00 0.00 42.27 2.32
767 808 6.387041 TCATTGCTGATTCATCTCCAATTC 57.613 37.500 0.00 0.00 31.12 2.17
768 809 6.127101 TCATTGCTGATTCATCTCCAATTCT 58.873 36.000 0.00 0.00 31.12 2.40
775 816 6.060136 TGATTCATCTCCAATTCTCCATGAC 58.940 40.000 0.00 0.00 0.00 3.06
779 820 2.093500 TCTCCAATTCTCCATGACACCG 60.093 50.000 0.00 0.00 0.00 4.94
781 822 2.835156 TCCAATTCTCCATGACACCGTA 59.165 45.455 0.00 0.00 0.00 4.02
791 832 4.020039 TCCATGACACCGTACTACCAAAAT 60.020 41.667 0.00 0.00 0.00 1.82
792 833 4.331717 CCATGACACCGTACTACCAAAATC 59.668 45.833 0.00 0.00 0.00 2.17
814 855 2.590821 ACCTATTTGATGATGCCCTGC 58.409 47.619 0.00 0.00 0.00 4.85
819 860 1.573607 TTGATGATGCCCTGCCTCCA 61.574 55.000 0.00 0.00 0.00 3.86
822 863 2.281345 GATGCCCTGCCTCCATCG 60.281 66.667 0.00 0.00 0.00 3.84
823 864 4.575973 ATGCCCTGCCTCCATCGC 62.576 66.667 0.00 0.00 0.00 4.58
828 869 2.420890 CTGCCTCCATCGCTCTCC 59.579 66.667 0.00 0.00 0.00 3.71
837 878 0.249405 CATCGCTCTCCCTCTGCTTC 60.249 60.000 0.00 0.00 0.00 3.86
844 885 1.203237 TCTCCCTCTGCTTCCTGTCTT 60.203 52.381 0.00 0.00 0.00 3.01
863 971 5.163364 TGTCTTTCTCTGCTTTCTGTCTCTT 60.163 40.000 0.00 0.00 0.00 2.85
870 978 3.906998 TGCTTTCTGTCTCTTTCTCTCG 58.093 45.455 0.00 0.00 0.00 4.04
910 1022 1.831652 CTTTGCTCTCCTCCCGTGGT 61.832 60.000 0.00 0.00 0.00 4.16
914 1033 0.831307 GCTCTCCTCCCGTGGTTATT 59.169 55.000 0.00 0.00 0.00 1.40
926 1045 1.922545 GTGGTTATTAGACACGCCGAC 59.077 52.381 0.00 0.00 0.00 4.79
934 1053 2.027625 GACACGCCGACCCAAGAAG 61.028 63.158 0.00 0.00 0.00 2.85
949 1068 2.624838 CAAGAAGGCAACACCATTCTGT 59.375 45.455 0.00 0.00 43.14 3.41
953 1072 1.421268 AGGCAACACCATTCTGTCTCA 59.579 47.619 0.00 0.00 43.14 3.27
954 1073 1.537202 GGCAACACCATTCTGTCTCAC 59.463 52.381 0.00 0.00 38.86 3.51
955 1074 1.537202 GCAACACCATTCTGTCTCACC 59.463 52.381 0.00 0.00 0.00 4.02
956 1075 2.811873 GCAACACCATTCTGTCTCACCT 60.812 50.000 0.00 0.00 0.00 4.00
958 1077 3.131709 ACACCATTCTGTCTCACCTTG 57.868 47.619 0.00 0.00 0.00 3.61
960 1110 1.421268 ACCATTCTGTCTCACCTTGCA 59.579 47.619 0.00 0.00 0.00 4.08
962 1112 1.462283 CATTCTGTCTCACCTTGCACG 59.538 52.381 0.00 0.00 0.00 5.34
966 1116 0.032952 TGTCTCACCTTGCACGGTAC 59.967 55.000 15.46 10.51 34.94 3.34
979 1129 2.202401 GGTACTGTCCGTCGTCGC 60.202 66.667 0.00 0.00 35.54 5.19
989 1148 3.749064 GTCGTCGCCTCCAGCTCA 61.749 66.667 0.00 0.00 40.39 4.26
990 1149 3.749064 TCGTCGCCTCCAGCTCAC 61.749 66.667 0.00 0.00 40.39 3.51
991 1150 3.753434 CGTCGCCTCCAGCTCACT 61.753 66.667 0.00 0.00 40.39 3.41
1145 1331 2.124996 CCCCTCCTCCTCCACCAA 59.875 66.667 0.00 0.00 0.00 3.67
1146 1332 2.301738 CCCCTCCTCCTCCACCAAC 61.302 68.421 0.00 0.00 0.00 3.77
1149 1335 1.293498 CTCCTCCTCCACCAACACG 59.707 63.158 0.00 0.00 0.00 4.49
1150 1336 2.172483 CTCCTCCTCCACCAACACGG 62.172 65.000 0.00 0.00 42.50 4.94
1187 1373 4.705991 ACAGGGTAAGTAACTAGTCTCTGC 59.294 45.833 6.76 1.94 0.00 4.26
1194 1380 2.873133 AACTAGTCTCTGCGCATACC 57.127 50.000 12.24 0.00 0.00 2.73
1195 1381 2.060050 ACTAGTCTCTGCGCATACCT 57.940 50.000 12.24 7.41 0.00 3.08
1196 1382 3.210232 ACTAGTCTCTGCGCATACCTA 57.790 47.619 12.24 8.23 0.00 3.08
1198 1384 4.145807 ACTAGTCTCTGCGCATACCTAAT 58.854 43.478 12.24 0.00 0.00 1.73
1229 1428 0.465705 ACGATGGATACCACAGGCAG 59.534 55.000 0.00 0.00 35.80 4.85
1239 1440 3.728076 ACCACAGGCAGTACATATACG 57.272 47.619 0.00 0.00 36.33 3.06
1240 1441 3.028850 ACCACAGGCAGTACATATACGT 58.971 45.455 0.00 0.00 36.33 3.57
1241 1442 4.209538 ACCACAGGCAGTACATATACGTA 58.790 43.478 0.00 0.00 36.33 3.57
1242 1443 4.037208 ACCACAGGCAGTACATATACGTAC 59.963 45.833 0.00 0.79 41.75 3.67
1257 1459 0.713883 CGTACTAACAGCAGCAACCG 59.286 55.000 0.00 0.00 0.00 4.44
1342 1569 3.606662 CGGCATCGGGGATCGTCT 61.607 66.667 0.00 0.00 40.32 4.18
1664 1914 3.062763 GCATCATAATCCACCTCACTCG 58.937 50.000 0.00 0.00 0.00 4.18
1665 1915 3.243873 GCATCATAATCCACCTCACTCGA 60.244 47.826 0.00 0.00 0.00 4.04
1697 1947 2.345244 CGCTCTGCCCAAGACTGT 59.655 61.111 0.00 0.00 0.00 3.55
1698 1948 2.031516 CGCTCTGCCCAAGACTGTG 61.032 63.158 0.00 0.00 0.00 3.66
1708 1958 1.336332 CCAAGACTGTGACTGAGGTCG 60.336 57.143 0.00 0.00 44.83 4.79
1783 2109 1.200252 GCAGCTGTAGAGAGTGTCGAA 59.800 52.381 16.64 0.00 0.00 3.71
1829 2155 5.284188 CGGCGAAGAAGAGAATATATTCGTC 59.716 44.000 17.69 15.73 41.04 4.20
1836 2162 8.918202 AGAAGAGAATATATTCGTCTCTGTCT 57.082 34.615 17.69 15.56 45.80 3.41
1840 2166 7.717436 AGAGAATATATTCGTCTCTGTCTGTCA 59.283 37.037 17.69 0.00 45.02 3.58
1845 2171 0.859374 CGTCTCTGTCTGTCATCGCG 60.859 60.000 0.00 0.00 0.00 5.87
1873 2199 2.693762 CCGATGCTGCAACAGTGGG 61.694 63.158 6.36 0.00 33.43 4.61
1874 2200 2.693762 CGATGCTGCAACAGTGGGG 61.694 63.158 6.36 0.00 33.43 4.96
1875 2201 1.604593 GATGCTGCAACAGTGGGGT 60.605 57.895 6.36 0.00 33.43 4.95
1876 2202 1.589716 GATGCTGCAACAGTGGGGTC 61.590 60.000 6.36 0.00 33.43 4.46
1877 2203 2.203337 GCTGCAACAGTGGGGTCA 60.203 61.111 0.00 0.00 33.43 4.02
1878 2204 2.555547 GCTGCAACAGTGGGGTCAC 61.556 63.158 0.00 0.00 43.93 3.67
1879 2205 1.898574 CTGCAACAGTGGGGTCACC 60.899 63.158 0.00 0.00 44.64 4.02
1908 2240 1.773054 CTATCCTTGCTGCTGCTGCG 61.773 60.000 23.38 12.08 43.34 5.18
1960 2295 0.526662 AATCTGCTGCTGCTTCTTGC 59.473 50.000 17.00 0.00 40.48 4.01
1975 2310 0.323178 CTTGCTCCCAGAGTTGGCAT 60.323 55.000 0.00 0.00 43.58 4.40
1992 2327 2.504367 GCATGTTACCTTGACCTGTGT 58.496 47.619 0.00 0.00 0.00 3.72
1993 2328 2.226437 GCATGTTACCTTGACCTGTGTG 59.774 50.000 0.00 0.00 0.00 3.82
1999 2334 1.016627 CCTTGACCTGTGTGTGTGTG 58.983 55.000 0.00 0.00 0.00 3.82
2000 2335 1.678728 CCTTGACCTGTGTGTGTGTGT 60.679 52.381 0.00 0.00 0.00 3.72
2001 2336 1.398041 CTTGACCTGTGTGTGTGTGTG 59.602 52.381 0.00 0.00 0.00 3.82
2002 2337 0.323302 TGACCTGTGTGTGTGTGTGT 59.677 50.000 0.00 0.00 0.00 3.72
2003 2338 0.726827 GACCTGTGTGTGTGTGTGTG 59.273 55.000 0.00 0.00 0.00 3.82
2004 2339 0.036164 ACCTGTGTGTGTGTGTGTGT 59.964 50.000 0.00 0.00 0.00 3.72
2005 2340 0.447406 CCTGTGTGTGTGTGTGTGTG 59.553 55.000 0.00 0.00 0.00 3.82
2006 2341 1.155889 CTGTGTGTGTGTGTGTGTGT 58.844 50.000 0.00 0.00 0.00 3.72
2007 2342 1.535028 CTGTGTGTGTGTGTGTGTGTT 59.465 47.619 0.00 0.00 0.00 3.32
2008 2343 1.950216 TGTGTGTGTGTGTGTGTGTTT 59.050 42.857 0.00 0.00 0.00 2.83
2009 2344 2.359214 TGTGTGTGTGTGTGTGTGTTTT 59.641 40.909 0.00 0.00 0.00 2.43
2010 2345 2.723658 GTGTGTGTGTGTGTGTGTTTTG 59.276 45.455 0.00 0.00 0.00 2.44
2011 2346 1.718711 GTGTGTGTGTGTGTGTTTTGC 59.281 47.619 0.00 0.00 0.00 3.68
2012 2347 0.981240 GTGTGTGTGTGTGTTTTGCG 59.019 50.000 0.00 0.00 0.00 4.85
2013 2348 0.875059 TGTGTGTGTGTGTTTTGCGA 59.125 45.000 0.00 0.00 0.00 5.10
2014 2349 1.266989 TGTGTGTGTGTGTTTTGCGAA 59.733 42.857 0.00 0.00 0.00 4.70
2015 2350 1.910819 GTGTGTGTGTGTTTTGCGAAG 59.089 47.619 0.00 0.00 0.00 3.79
2016 2351 1.135546 TGTGTGTGTGTTTTGCGAAGG 60.136 47.619 0.00 0.00 0.00 3.46
2017 2352 1.131504 GTGTGTGTGTTTTGCGAAGGA 59.868 47.619 0.00 0.00 0.00 3.36
2018 2353 1.400142 TGTGTGTGTTTTGCGAAGGAG 59.600 47.619 0.00 0.00 0.00 3.69
2019 2354 1.400494 GTGTGTGTTTTGCGAAGGAGT 59.600 47.619 0.00 0.00 0.00 3.85
2020 2355 1.668751 TGTGTGTTTTGCGAAGGAGTC 59.331 47.619 0.00 0.00 0.00 3.36
2021 2356 1.668751 GTGTGTTTTGCGAAGGAGTCA 59.331 47.619 0.00 0.00 0.00 3.41
2022 2357 2.096819 GTGTGTTTTGCGAAGGAGTCAA 59.903 45.455 0.00 0.00 0.00 3.18
2023 2358 2.948979 TGTGTTTTGCGAAGGAGTCAAT 59.051 40.909 0.00 0.00 0.00 2.57
2024 2359 3.380004 TGTGTTTTGCGAAGGAGTCAATT 59.620 39.130 0.00 0.00 0.00 2.32
2025 2360 3.975035 GTGTTTTGCGAAGGAGTCAATTC 59.025 43.478 0.00 0.00 0.00 2.17
2077 2412 7.714377 AGTCTTAAATAGATGATGAACTGCTGG 59.286 37.037 0.00 0.00 34.79 4.85
2078 2413 6.484643 TCTTAAATAGATGATGAACTGCTGGC 59.515 38.462 0.00 0.00 0.00 4.85
2088 2423 2.355009 CTGCTGGCGGTGTTTTGC 60.355 61.111 0.00 0.00 0.00 3.68
2090 2425 1.514678 CTGCTGGCGGTGTTTTGCTA 61.515 55.000 0.00 0.00 0.00 3.49
2099 2434 3.112580 CGGTGTTTTGCTAAGGTTTGTG 58.887 45.455 0.00 0.00 0.00 3.33
2113 2449 3.132111 AGGTTTGTGACAAATGGTGTTCC 59.868 43.478 14.40 8.58 41.96 3.62
2114 2450 3.132111 GGTTTGTGACAAATGGTGTTCCT 59.868 43.478 14.40 0.00 41.96 3.36
2120 2456 1.238439 CAAATGGTGTTCCTGTCGCT 58.762 50.000 0.00 0.00 34.23 4.93
2127 2463 2.747460 TTCCTGTCGCTGCATGGC 60.747 61.111 0.00 0.00 0.00 4.40
2128 2464 3.549900 TTCCTGTCGCTGCATGGCA 62.550 57.895 0.00 0.00 36.92 4.92
2133 2469 4.783621 TCGCTGCATGGCACTCCC 62.784 66.667 0.00 0.00 33.79 4.30
2137 2473 2.611800 TGCATGGCACTCCCTCCT 60.612 61.111 0.00 0.00 31.71 3.69
2143 2479 2.196742 TGGCACTCCCTCCTATTCAT 57.803 50.000 0.00 0.00 0.00 2.57
2220 2556 9.719355 TGAGTGAACAAACATACTATAATGTGT 57.281 29.630 0.00 0.00 39.98 3.72
2222 2558 9.944376 AGTGAACAAACATACTATAATGTGTCT 57.056 29.630 0.00 0.00 39.98 3.41
2252 2588 8.205131 ACATTGGTTTACGAATATGTTAGACC 57.795 34.615 0.00 0.00 0.00 3.85
2253 2589 7.825270 ACATTGGTTTACGAATATGTTAGACCA 59.175 33.333 0.00 0.00 33.20 4.02
2254 2590 8.836413 CATTGGTTTACGAATATGTTAGACCAT 58.164 33.333 0.00 0.00 34.90 3.55
2255 2591 8.428186 TTGGTTTACGAATATGTTAGACCATC 57.572 34.615 0.00 0.00 34.90 3.51
2256 2592 7.788026 TGGTTTACGAATATGTTAGACCATCT 58.212 34.615 0.00 0.00 30.31 2.90
2257 2593 8.262227 TGGTTTACGAATATGTTAGACCATCTT 58.738 33.333 0.00 0.00 30.31 2.40
2258 2594 9.754382 GGTTTACGAATATGTTAGACCATCTTA 57.246 33.333 0.00 0.00 0.00 2.10
2274 2610 9.359653 AGACCATCTTATATTTTTGAATGGAGG 57.640 33.333 5.54 0.00 0.00 4.30
2275 2611 8.482852 ACCATCTTATATTTTTGAATGGAGGG 57.517 34.615 5.54 0.00 0.00 4.30
2276 2612 8.067488 ACCATCTTATATTTTTGAATGGAGGGT 58.933 33.333 5.54 0.00 31.87 4.34
2277 2613 8.362639 CCATCTTATATTTTTGAATGGAGGGTG 58.637 37.037 0.00 0.00 0.00 4.61
2278 2614 8.917088 CATCTTATATTTTTGAATGGAGGGTGT 58.083 33.333 0.00 0.00 0.00 4.16
2280 2616 9.983024 TCTTATATTTTTGAATGGAGGGTGTAA 57.017 29.630 0.00 0.00 0.00 2.41
2283 2619 8.837099 ATATTTTTGAATGGAGGGTGTAATCA 57.163 30.769 0.00 0.00 0.00 2.57
2284 2620 7.738437 ATTTTTGAATGGAGGGTGTAATCAT 57.262 32.000 0.00 0.00 0.00 2.45
2285 2621 7.552050 TTTTTGAATGGAGGGTGTAATCATT 57.448 32.000 0.00 0.00 0.00 2.57
2286 2622 6.773976 TTTGAATGGAGGGTGTAATCATTC 57.226 37.500 0.00 0.00 42.12 2.67
2287 2623 4.450976 TGAATGGAGGGTGTAATCATTCG 58.549 43.478 0.00 0.00 43.68 3.34
2288 2624 2.325583 TGGAGGGTGTAATCATTCGC 57.674 50.000 0.00 0.00 0.00 4.70
2289 2625 1.557371 TGGAGGGTGTAATCATTCGCA 59.443 47.619 0.00 0.00 0.00 5.10
2290 2626 2.026729 TGGAGGGTGTAATCATTCGCAA 60.027 45.455 0.00 0.00 0.00 4.85
2291 2627 3.013921 GGAGGGTGTAATCATTCGCAAA 58.986 45.455 0.00 0.00 0.00 3.68
2292 2628 3.442273 GGAGGGTGTAATCATTCGCAAAA 59.558 43.478 0.00 0.00 0.00 2.44
2293 2629 4.082463 GGAGGGTGTAATCATTCGCAAAAA 60.082 41.667 0.00 0.00 0.00 1.94
2315 2651 4.576330 AAAGAATGGAGGGTGTAAGAGG 57.424 45.455 0.00 0.00 0.00 3.69
2316 2652 3.207044 AGAATGGAGGGTGTAAGAGGT 57.793 47.619 0.00 0.00 0.00 3.85
2317 2653 4.348020 AGAATGGAGGGTGTAAGAGGTA 57.652 45.455 0.00 0.00 0.00 3.08
2318 2654 4.897051 AGAATGGAGGGTGTAAGAGGTAT 58.103 43.478 0.00 0.00 0.00 2.73
2319 2655 4.902448 AGAATGGAGGGTGTAAGAGGTATC 59.098 45.833 0.00 0.00 0.00 2.24
2320 2656 2.662866 TGGAGGGTGTAAGAGGTATCG 58.337 52.381 0.00 0.00 0.00 2.92
2321 2657 2.024655 TGGAGGGTGTAAGAGGTATCGT 60.025 50.000 0.00 0.00 0.00 3.73
2322 2658 2.622470 GGAGGGTGTAAGAGGTATCGTC 59.378 54.545 0.00 0.00 0.00 4.20
2323 2659 2.290093 GAGGGTGTAAGAGGTATCGTCG 59.710 54.545 0.00 0.00 0.00 5.12
2324 2660 1.336125 GGGTGTAAGAGGTATCGTCGG 59.664 57.143 0.00 0.00 0.00 4.79
2325 2661 2.292267 GGTGTAAGAGGTATCGTCGGA 58.708 52.381 0.00 0.00 0.00 4.55
2326 2662 2.883386 GGTGTAAGAGGTATCGTCGGAT 59.117 50.000 0.00 0.00 36.65 4.18
2327 2663 3.304525 GGTGTAAGAGGTATCGTCGGATG 60.305 52.174 0.00 0.00 34.00 3.51
2328 2664 3.314635 GTGTAAGAGGTATCGTCGGATGT 59.685 47.826 0.00 0.00 34.00 3.06
2329 2665 3.949754 TGTAAGAGGTATCGTCGGATGTT 59.050 43.478 0.00 0.00 34.00 2.71
2330 2666 5.008019 GTGTAAGAGGTATCGTCGGATGTTA 59.992 44.000 0.00 0.00 34.00 2.41
2331 2667 5.589855 TGTAAGAGGTATCGTCGGATGTTAA 59.410 40.000 0.00 0.00 34.00 2.01
2332 2668 5.786264 AAGAGGTATCGTCGGATGTTAAT 57.214 39.130 0.00 0.00 34.00 1.40
2333 2669 5.786264 AGAGGTATCGTCGGATGTTAATT 57.214 39.130 0.00 0.00 34.00 1.40
2334 2670 6.158023 AGAGGTATCGTCGGATGTTAATTT 57.842 37.500 0.00 0.00 34.00 1.82
2335 2671 6.579865 AGAGGTATCGTCGGATGTTAATTTT 58.420 36.000 0.00 0.00 34.00 1.82
2336 2672 7.046033 AGAGGTATCGTCGGATGTTAATTTTT 58.954 34.615 0.00 0.00 34.00 1.94
2370 2706 7.878547 TTTTTGAAATGGAGGCAAAATCTTT 57.121 28.000 0.00 0.00 40.09 2.52
2371 2707 7.495135 TTTTGAAATGGAGGCAAAATCTTTC 57.505 32.000 0.00 0.00 36.80 2.62
2372 2708 6.423776 TTGAAATGGAGGCAAAATCTTTCT 57.576 33.333 0.00 0.00 0.00 2.52
2373 2709 7.537596 TTGAAATGGAGGCAAAATCTTTCTA 57.462 32.000 0.00 0.00 0.00 2.10
2374 2710 7.722949 TGAAATGGAGGCAAAATCTTTCTAT 57.277 32.000 0.00 0.00 0.00 1.98
2375 2711 7.775120 TGAAATGGAGGCAAAATCTTTCTATC 58.225 34.615 0.00 0.00 0.00 2.08
2376 2712 7.396907 TGAAATGGAGGCAAAATCTTTCTATCA 59.603 33.333 0.00 0.00 0.00 2.15
2377 2713 7.909485 AATGGAGGCAAAATCTTTCTATCAT 57.091 32.000 0.00 0.00 0.00 2.45
2378 2714 6.949352 TGGAGGCAAAATCTTTCTATCATC 57.051 37.500 0.00 0.00 0.00 2.92
2379 2715 5.829924 TGGAGGCAAAATCTTTCTATCATCC 59.170 40.000 0.00 0.00 0.00 3.51
2380 2716 5.829924 GGAGGCAAAATCTTTCTATCATCCA 59.170 40.000 0.00 0.00 0.00 3.41
2381 2717 6.492772 GGAGGCAAAATCTTTCTATCATCCAT 59.507 38.462 0.00 0.00 0.00 3.41
2382 2718 7.015001 GGAGGCAAAATCTTTCTATCATCCATT 59.985 37.037 0.00 0.00 0.00 3.16
2383 2719 9.071276 GAGGCAAAATCTTTCTATCATCCATTA 57.929 33.333 0.00 0.00 0.00 1.90
2384 2720 9.075678 AGGCAAAATCTTTCTATCATCCATTAG 57.924 33.333 0.00 0.00 0.00 1.73
2385 2721 8.854117 GGCAAAATCTTTCTATCATCCATTAGT 58.146 33.333 0.00 0.00 0.00 2.24
2409 2745 9.984190 AGTTAAGAGAGAAATAGAGTTTTTCGT 57.016 29.630 0.00 0.00 37.98 3.85
2414 2750 9.760077 AGAGAGAAATAGAGTTTTTCGTTTACA 57.240 29.630 0.00 0.00 37.98 2.41
2421 2757 9.815936 AATAGAGTTTTTCGTTTACAAATACGG 57.184 29.630 0.00 0.00 38.26 4.02
2422 2758 7.250445 AGAGTTTTTCGTTTACAAATACGGT 57.750 32.000 0.00 0.00 38.26 4.83
2423 2759 7.127686 AGAGTTTTTCGTTTACAAATACGGTG 58.872 34.615 0.00 0.00 38.26 4.94
2424 2760 6.200808 AGTTTTTCGTTTACAAATACGGTGG 58.799 36.000 0.00 0.00 38.26 4.61
2425 2761 3.809918 TTCGTTTACAAATACGGTGGC 57.190 42.857 0.00 0.00 38.26 5.01
2426 2762 2.075338 TCGTTTACAAATACGGTGGCC 58.925 47.619 0.00 0.00 38.26 5.36
2427 2763 1.805345 CGTTTACAAATACGGTGGCCA 59.195 47.619 0.00 0.00 34.30 5.36
2428 2764 2.225963 CGTTTACAAATACGGTGGCCAA 59.774 45.455 7.24 0.00 34.30 4.52
2429 2765 3.668491 CGTTTACAAATACGGTGGCCAAG 60.668 47.826 7.24 7.62 34.30 3.61
2430 2766 2.863132 TACAAATACGGTGGCCAAGT 57.137 45.000 7.24 14.19 0.00 3.16
2431 2767 1.530323 ACAAATACGGTGGCCAAGTC 58.470 50.000 17.26 5.26 0.00 3.01
2432 2768 0.808755 CAAATACGGTGGCCAAGTCC 59.191 55.000 17.26 9.50 0.00 3.85
2433 2769 0.323087 AAATACGGTGGCCAAGTCCC 60.323 55.000 17.26 9.13 0.00 4.46
2434 2770 2.206182 AATACGGTGGCCAAGTCCCC 62.206 60.000 17.26 8.75 0.00 4.81
2438 2774 4.966787 GTGGCCAAGTCCCCGCAA 62.967 66.667 7.24 0.00 0.00 4.85
2439 2775 4.211330 TGGCCAAGTCCCCGCAAA 62.211 61.111 0.61 0.00 0.00 3.68
2440 2776 2.915137 GGCCAAGTCCCCGCAAAA 60.915 61.111 0.00 0.00 0.00 2.44
2441 2777 2.503382 GGCCAAGTCCCCGCAAAAA 61.503 57.895 0.00 0.00 0.00 1.94
2461 2797 2.368655 AAAAACGATGGCCAAGCATC 57.631 45.000 10.96 0.54 0.00 3.91
2462 2798 0.532115 AAAACGATGGCCAAGCATCC 59.468 50.000 10.96 0.00 0.00 3.51
2463 2799 0.323725 AAACGATGGCCAAGCATCCT 60.324 50.000 10.96 0.00 0.00 3.24
2464 2800 1.033746 AACGATGGCCAAGCATCCTG 61.034 55.000 10.96 0.00 0.00 3.86
2465 2801 2.842256 CGATGGCCAAGCATCCTGC 61.842 63.158 10.96 0.00 45.46 4.85
2474 2810 2.827642 GCATCCTGCTCTGGCACC 60.828 66.667 0.00 0.00 44.28 5.01
2475 2811 2.513204 CATCCTGCTCTGGCACCG 60.513 66.667 0.00 0.00 44.28 4.94
2476 2812 4.479993 ATCCTGCTCTGGCACCGC 62.480 66.667 0.00 0.00 44.28 5.68
2499 2835 4.415150 CTCCGGTGCTGGTGCCAT 62.415 66.667 0.00 0.00 38.71 4.40
2500 2836 4.408821 TCCGGTGCTGGTGCCATC 62.409 66.667 0.00 0.00 38.71 3.51
2501 2837 4.720902 CCGGTGCTGGTGCCATCA 62.721 66.667 0.00 0.00 38.71 3.07
2502 2838 3.129502 CGGTGCTGGTGCCATCAG 61.130 66.667 0.00 0.00 38.71 2.90
2503 2839 2.352422 GGTGCTGGTGCCATCAGA 59.648 61.111 9.69 0.00 38.71 3.27
2504 2840 2.042831 GGTGCTGGTGCCATCAGAC 61.043 63.158 9.69 4.18 38.71 3.51
2505 2841 2.046988 TGCTGGTGCCATCAGACG 60.047 61.111 9.69 0.00 38.71 4.18
2506 2842 2.265739 GCTGGTGCCATCAGACGA 59.734 61.111 9.69 0.00 34.36 4.20
2507 2843 2.103042 GCTGGTGCCATCAGACGAC 61.103 63.158 9.69 0.00 34.36 4.34
2508 2844 1.807165 CTGGTGCCATCAGACGACG 60.807 63.158 0.00 0.00 34.36 5.12
2509 2845 2.212900 CTGGTGCCATCAGACGACGA 62.213 60.000 0.00 0.00 34.36 4.20
2510 2846 1.141881 GGTGCCATCAGACGACGAT 59.858 57.895 0.00 0.00 0.00 3.73
2511 2847 1.148157 GGTGCCATCAGACGACGATG 61.148 60.000 0.00 10.72 40.01 3.84
2512 2848 0.179137 GTGCCATCAGACGACGATGA 60.179 55.000 16.25 5.89 42.39 2.92
2513 2849 0.746659 TGCCATCAGACGACGATGAT 59.253 50.000 16.25 8.15 42.39 2.45
2514 2850 1.269257 TGCCATCAGACGACGATGATC 60.269 52.381 14.48 7.87 42.39 2.92
2515 2851 1.932604 GCCATCAGACGACGATGATCC 60.933 57.143 14.48 7.74 42.39 3.36
2516 2852 1.664302 CCATCAGACGACGATGATCCG 60.664 57.143 14.48 7.40 42.39 4.18
2517 2853 1.264288 CATCAGACGACGATGATCCGA 59.736 52.381 14.48 0.00 42.39 4.55
2518 2854 1.594331 TCAGACGACGATGATCCGAT 58.406 50.000 0.00 0.00 0.00 4.18
2519 2855 1.531578 TCAGACGACGATGATCCGATC 59.468 52.381 0.00 1.01 0.00 3.69
2525 2861 3.093566 CGATGATCCGATCGTCCAC 57.906 57.895 20.35 3.33 41.25 4.02
2526 2862 0.726118 CGATGATCCGATCGTCCACG 60.726 60.000 20.35 10.07 41.25 4.94
2535 2871 4.979204 TCGTCCACGACATCAACC 57.021 55.556 0.00 0.00 44.22 3.77
2536 2872 2.042800 TCGTCCACGACATCAACCA 58.957 52.632 0.00 0.00 44.22 3.67
2537 2873 0.389757 TCGTCCACGACATCAACCAA 59.610 50.000 0.00 0.00 44.22 3.67
2538 2874 1.001520 TCGTCCACGACATCAACCAAT 59.998 47.619 0.00 0.00 44.22 3.16
2539 2875 1.128507 CGTCCACGACATCAACCAATG 59.871 52.381 0.00 0.00 43.02 2.82
2540 2876 2.422597 GTCCACGACATCAACCAATGA 58.577 47.619 0.00 0.00 43.67 2.57
2541 2877 4.474914 CGTCCACGACATCAACCAATGAT 61.475 47.826 0.00 0.00 45.38 2.45
2542 2878 5.208109 CGTCCACGACATCAACCAATGATA 61.208 45.833 0.00 0.00 43.81 2.15
2543 2879 7.187211 CGTCCACGACATCAACCAATGATAC 62.187 48.000 0.00 0.00 43.81 2.24
2549 2885 2.325583 TCAACCAATGATACCTCGCC 57.674 50.000 0.00 0.00 31.50 5.54
2550 2886 1.557371 TCAACCAATGATACCTCGCCA 59.443 47.619 0.00 0.00 31.50 5.69
2551 2887 1.670811 CAACCAATGATACCTCGCCAC 59.329 52.381 0.00 0.00 0.00 5.01
2552 2888 0.179084 ACCAATGATACCTCGCCACG 60.179 55.000 0.00 0.00 0.00 4.94
2553 2889 0.104120 CCAATGATACCTCGCCACGA 59.896 55.000 0.00 0.00 0.00 4.35
2554 2890 1.472552 CCAATGATACCTCGCCACGAA 60.473 52.381 0.00 0.00 34.74 3.85
2555 2891 1.860950 CAATGATACCTCGCCACGAAG 59.139 52.381 0.00 0.00 34.74 3.79
2556 2892 0.389391 ATGATACCTCGCCACGAAGG 59.611 55.000 0.00 0.00 41.84 3.46
2557 2893 0.681887 TGATACCTCGCCACGAAGGA 60.682 55.000 10.88 0.00 41.22 3.36
2558 2894 0.248949 GATACCTCGCCACGAAGGAC 60.249 60.000 10.88 0.00 41.22 3.85
2559 2895 0.683504 ATACCTCGCCACGAAGGACT 60.684 55.000 10.88 0.00 41.22 3.85
2560 2896 0.896940 TACCTCGCCACGAAGGACTT 60.897 55.000 10.88 0.00 41.22 3.01
2561 2897 1.738099 CCTCGCCACGAAGGACTTG 60.738 63.158 2.86 0.00 41.22 3.16
2562 2898 1.006102 CTCGCCACGAAGGACTTGT 60.006 57.895 2.86 0.00 41.22 3.16
2563 2899 0.242825 CTCGCCACGAAGGACTTGTA 59.757 55.000 2.86 0.00 41.22 2.41
2564 2900 0.892755 TCGCCACGAAGGACTTGTAT 59.107 50.000 2.86 0.00 41.22 2.29
2565 2901 0.999406 CGCCACGAAGGACTTGTATG 59.001 55.000 2.86 0.00 41.22 2.39
2566 2902 0.727398 GCCACGAAGGACTTGTATGC 59.273 55.000 2.86 0.00 41.22 3.14
2567 2903 0.999406 CCACGAAGGACTTGTATGCG 59.001 55.000 0.00 0.00 41.22 4.73
2568 2904 0.999406 CACGAAGGACTTGTATGCGG 59.001 55.000 0.00 0.00 0.00 5.69
2569 2905 0.108329 ACGAAGGACTTGTATGCGGG 60.108 55.000 0.00 0.00 0.00 6.13
2570 2906 1.429148 CGAAGGACTTGTATGCGGGC 61.429 60.000 0.00 0.00 0.00 6.13
2571 2907 1.077716 AAGGACTTGTATGCGGGCC 60.078 57.895 0.00 0.00 0.00 5.80
2572 2908 2.869503 AAGGACTTGTATGCGGGCCG 62.870 60.000 24.35 24.35 0.00 6.13
2587 2923 4.776322 CCGCTGCCATCGGGTCAA 62.776 66.667 0.00 0.00 42.99 3.18
2588 2924 2.514592 CGCTGCCATCGGGTCAAT 60.515 61.111 0.00 0.00 36.17 2.57
2589 2925 2.827051 CGCTGCCATCGGGTCAATG 61.827 63.158 0.00 0.00 36.17 2.82
2590 2926 3.113745 CTGCCATCGGGTCAATGC 58.886 61.111 0.00 0.00 36.17 3.56
2591 2927 2.440065 TGCCATCGGGTCAATGCC 60.440 61.111 0.00 0.00 36.17 4.40
2592 2928 2.440065 GCCATCGGGTCAATGCCA 60.440 61.111 0.00 0.00 36.17 4.92
2593 2929 2.051518 GCCATCGGGTCAATGCCAA 61.052 57.895 0.00 0.00 36.17 4.52
2594 2930 2.008268 GCCATCGGGTCAATGCCAAG 62.008 60.000 0.00 0.00 36.17 3.61
2595 2931 1.434696 CATCGGGTCAATGCCAAGC 59.565 57.895 0.00 0.00 0.00 4.01
2596 2932 1.033746 CATCGGGTCAATGCCAAGCT 61.034 55.000 0.00 0.00 0.00 3.74
2597 2933 0.323725 ATCGGGTCAATGCCAAGCTT 60.324 50.000 0.00 0.00 0.00 3.74
2598 2934 0.960364 TCGGGTCAATGCCAAGCTTC 60.960 55.000 0.00 0.00 0.00 3.86
2599 2935 0.962356 CGGGTCAATGCCAAGCTTCT 60.962 55.000 0.00 0.00 0.00 2.85
2600 2936 0.529378 GGGTCAATGCCAAGCTTCTG 59.471 55.000 0.00 0.00 0.00 3.02
2601 2937 0.529378 GGTCAATGCCAAGCTTCTGG 59.471 55.000 0.00 0.00 39.71 3.86
2608 2944 2.412605 CCAAGCTTCTGGCATAGGC 58.587 57.895 0.00 0.00 44.79 3.93
2609 2945 0.394762 CCAAGCTTCTGGCATAGGCA 60.395 55.000 9.55 0.00 44.79 4.75
2610 2946 0.737219 CAAGCTTCTGGCATAGGCAC 59.263 55.000 9.55 0.00 44.79 5.01
2611 2947 0.394899 AAGCTTCTGGCATAGGCACC 60.395 55.000 9.55 0.00 44.79 5.01
2612 2948 2.182842 GCTTCTGGCATAGGCACCG 61.183 63.158 0.15 0.00 43.71 4.94
2613 2949 1.522092 CTTCTGGCATAGGCACCGA 59.478 57.895 0.15 0.00 43.71 4.69
2614 2950 0.531532 CTTCTGGCATAGGCACCGAG 60.532 60.000 0.15 0.00 43.71 4.63
2615 2951 1.971505 TTCTGGCATAGGCACCGAGG 61.972 60.000 0.15 0.00 43.71 4.63
2616 2952 4.175337 TGGCATAGGCACCGAGGC 62.175 66.667 0.15 0.00 43.71 4.70
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.319541 TTGGGGACGCGAAATCAAAA 58.680 45.000 15.93 0.00 0.00 2.44
1 2 1.319541 TTTGGGGACGCGAAATCAAA 58.680 45.000 15.93 14.88 0.00 2.69
2 3 1.201181 CATTTGGGGACGCGAAATCAA 59.799 47.619 15.93 9.35 0.00 2.57
3 4 0.808125 CATTTGGGGACGCGAAATCA 59.192 50.000 15.93 2.63 0.00 2.57
4 5 0.808755 ACATTTGGGGACGCGAAATC 59.191 50.000 15.93 0.00 0.00 2.17
5 6 0.525761 CACATTTGGGGACGCGAAAT 59.474 50.000 15.93 4.79 0.00 2.17
6 7 1.519751 CCACATTTGGGGACGCGAAA 61.520 55.000 15.93 1.92 42.67 3.46
7 8 1.969064 CCACATTTGGGGACGCGAA 60.969 57.895 15.93 0.00 42.67 4.70
8 9 2.359354 CCACATTTGGGGACGCGA 60.359 61.111 15.93 0.00 42.67 5.87
30 31 9.866798 TGCATATGTATGAGTAAATTGCAAAAA 57.133 25.926 1.71 0.00 34.91 1.94
31 32 9.518906 CTGCATATGTATGAGTAAATTGCAAAA 57.481 29.630 1.71 0.00 37.16 2.44
32 33 8.136800 CCTGCATATGTATGAGTAAATTGCAAA 58.863 33.333 1.71 0.00 37.16 3.68
33 34 7.285172 ACCTGCATATGTATGAGTAAATTGCAA 59.715 33.333 0.00 0.00 37.16 4.08
34 35 6.772233 ACCTGCATATGTATGAGTAAATTGCA 59.228 34.615 4.29 0.00 35.75 4.08
35 36 7.080099 CACCTGCATATGTATGAGTAAATTGC 58.920 38.462 4.29 0.00 35.75 3.56
36 37 7.229306 ACCACCTGCATATGTATGAGTAAATTG 59.771 37.037 4.29 0.00 35.75 2.32
37 38 7.290061 ACCACCTGCATATGTATGAGTAAATT 58.710 34.615 4.29 0.00 35.75 1.82
38 39 6.841601 ACCACCTGCATATGTATGAGTAAAT 58.158 36.000 4.29 0.00 35.75 1.40
39 40 6.247229 ACCACCTGCATATGTATGAGTAAA 57.753 37.500 4.29 0.00 35.75 2.01
40 41 5.887214 ACCACCTGCATATGTATGAGTAA 57.113 39.130 4.29 0.00 35.75 2.24
41 42 5.454613 CCAACCACCTGCATATGTATGAGTA 60.455 44.000 4.29 0.00 35.75 2.59
42 43 4.454678 CAACCACCTGCATATGTATGAGT 58.545 43.478 4.29 0.00 35.75 3.41
43 44 3.817084 CCAACCACCTGCATATGTATGAG 59.183 47.826 4.29 0.00 35.75 2.90
44 45 3.434882 CCCAACCACCTGCATATGTATGA 60.435 47.826 4.29 0.00 35.75 2.15
45 46 2.886523 CCCAACCACCTGCATATGTATG 59.113 50.000 4.29 0.00 36.78 2.39
49 50 0.396139 AGCCCAACCACCTGCATATG 60.396 55.000 0.00 0.00 0.00 1.78
82 83 0.039618 TGGGGAGGATTTTGGTGAGC 59.960 55.000 0.00 0.00 0.00 4.26
86 87 4.898014 TGATAATGGGGAGGATTTTGGT 57.102 40.909 0.00 0.00 0.00 3.67
96 97 3.385433 CAGCAGCAATTTGATAATGGGGA 59.615 43.478 0.00 0.00 0.00 4.81
97 98 3.133362 ACAGCAGCAATTTGATAATGGGG 59.867 43.478 0.00 0.00 0.00 4.96
116 117 8.672823 TCATCTCATCCAAATGAAATCTACAG 57.327 34.615 0.00 0.00 41.33 2.74
150 151 5.408299 GTGGTGAATAATGAAAAAGGGCAAC 59.592 40.000 0.00 0.00 0.00 4.17
152 153 4.590647 TGTGGTGAATAATGAAAAAGGGCA 59.409 37.500 0.00 0.00 0.00 5.36
189 190 3.769201 AGCCTGCCTGCTTTTGAC 58.231 55.556 0.00 0.00 38.85 3.18
203 204 5.048846 TGGATGGTAAGAGGAAATAAGCC 57.951 43.478 0.00 0.00 0.00 4.35
235 239 5.390461 CGTCATGCAGGTTAAAGAATTCGAA 60.390 40.000 0.00 0.00 0.00 3.71
237 241 4.334443 CGTCATGCAGGTTAAAGAATTCG 58.666 43.478 0.00 0.00 0.00 3.34
243 247 0.796312 ACGCGTCATGCAGGTTAAAG 59.204 50.000 5.58 0.00 46.97 1.85
246 250 1.447140 GGACGCGTCATGCAGGTTA 60.447 57.895 37.26 0.00 46.97 2.85
280 284 2.027192 TGGAAGAGTAACAGGGCATGTC 60.027 50.000 4.81 0.00 43.00 3.06
282 286 2.237143 TCTGGAAGAGTAACAGGGCATG 59.763 50.000 0.00 0.00 38.67 4.06
283 287 2.551270 TCTGGAAGAGTAACAGGGCAT 58.449 47.619 0.00 0.00 38.67 4.40
284 288 2.024176 TCTGGAAGAGTAACAGGGCA 57.976 50.000 0.00 0.00 38.67 5.36
295 299 2.661718 GTTGGGTTGGTTTCTGGAAGA 58.338 47.619 0.00 0.00 44.68 2.87
296 300 1.686587 GGTTGGGTTGGTTTCTGGAAG 59.313 52.381 0.00 0.00 0.00 3.46
297 301 1.689892 GGGTTGGGTTGGTTTCTGGAA 60.690 52.381 0.00 0.00 0.00 3.53
298 302 0.105913 GGGTTGGGTTGGTTTCTGGA 60.106 55.000 0.00 0.00 0.00 3.86
299 303 0.397816 TGGGTTGGGTTGGTTTCTGG 60.398 55.000 0.00 0.00 0.00 3.86
300 304 1.490574 TTGGGTTGGGTTGGTTTCTG 58.509 50.000 0.00 0.00 0.00 3.02
301 305 2.115427 CTTTGGGTTGGGTTGGTTTCT 58.885 47.619 0.00 0.00 0.00 2.52
302 306 2.112190 TCTTTGGGTTGGGTTGGTTTC 58.888 47.619 0.00 0.00 0.00 2.78
303 307 2.255770 TCTTTGGGTTGGGTTGGTTT 57.744 45.000 0.00 0.00 0.00 3.27
304 308 2.046292 CATCTTTGGGTTGGGTTGGTT 58.954 47.619 0.00 0.00 0.00 3.67
305 309 1.715785 CATCTTTGGGTTGGGTTGGT 58.284 50.000 0.00 0.00 0.00 3.67
306 310 0.321346 GCATCTTTGGGTTGGGTTGG 59.679 55.000 0.00 0.00 0.00 3.77
307 311 1.047002 TGCATCTTTGGGTTGGGTTG 58.953 50.000 0.00 0.00 0.00 3.77
308 312 1.624813 CATGCATCTTTGGGTTGGGTT 59.375 47.619 0.00 0.00 0.00 4.11
309 313 1.269012 CATGCATCTTTGGGTTGGGT 58.731 50.000 0.00 0.00 0.00 4.51
310 314 0.108041 GCATGCATCTTTGGGTTGGG 60.108 55.000 14.21 0.00 0.00 4.12
311 315 0.899720 AGCATGCATCTTTGGGTTGG 59.100 50.000 21.98 0.00 0.00 3.77
312 316 2.028839 TGAAGCATGCATCTTTGGGTTG 60.029 45.455 22.26 0.00 0.00 3.77
313 317 2.250031 TGAAGCATGCATCTTTGGGTT 58.750 42.857 22.26 3.65 0.00 4.11
314 318 1.927487 TGAAGCATGCATCTTTGGGT 58.073 45.000 22.26 0.00 0.00 4.51
315 319 3.536956 ATTGAAGCATGCATCTTTGGG 57.463 42.857 22.26 0.00 0.00 4.12
316 320 4.755411 AGAATTGAAGCATGCATCTTTGG 58.245 39.130 22.26 0.00 0.00 3.28
317 321 6.100004 AGAAGAATTGAAGCATGCATCTTTG 58.900 36.000 22.26 0.00 0.00 2.77
318 322 6.282199 AGAAGAATTGAAGCATGCATCTTT 57.718 33.333 22.26 15.72 0.00 2.52
319 323 5.916661 AGAAGAATTGAAGCATGCATCTT 57.083 34.783 22.26 17.77 0.00 2.40
320 324 5.007430 CGTAGAAGAATTGAAGCATGCATCT 59.993 40.000 22.26 11.30 0.00 2.90
321 325 5.007039 TCGTAGAAGAATTGAAGCATGCATC 59.993 40.000 21.98 18.73 0.00 3.91
322 326 4.877823 TCGTAGAAGAATTGAAGCATGCAT 59.122 37.500 21.98 8.13 0.00 3.96
323 327 4.252878 TCGTAGAAGAATTGAAGCATGCA 58.747 39.130 21.98 0.00 0.00 3.96
324 328 4.864916 TCGTAGAAGAATTGAAGCATGC 57.135 40.909 10.51 10.51 0.00 4.06
325 329 6.312426 AGTCTTCGTAGAAGAATTGAAGCATG 59.688 38.462 13.29 0.00 45.90 4.06
326 330 6.402222 AGTCTTCGTAGAAGAATTGAAGCAT 58.598 36.000 13.29 0.00 45.90 3.79
327 331 5.784177 AGTCTTCGTAGAAGAATTGAAGCA 58.216 37.500 13.29 0.00 45.90 3.91
328 332 6.034470 CAGAGTCTTCGTAGAAGAATTGAAGC 59.966 42.308 13.29 1.90 45.90 3.86
329 333 7.087639 ACAGAGTCTTCGTAGAAGAATTGAAG 58.912 38.462 13.29 7.14 45.90 3.02
334 338 7.690952 ACTAACAGAGTCTTCGTAGAAGAAT 57.309 36.000 13.29 12.51 35.57 2.40
351 355 2.494918 CGGAGCCCGGACTAACAG 59.505 66.667 0.73 0.00 44.15 3.16
414 418 0.749049 TCTGCATCTGATCGAGGGTG 59.251 55.000 0.00 0.00 0.00 4.61
415 419 1.039068 CTCTGCATCTGATCGAGGGT 58.961 55.000 0.00 0.00 0.00 4.34
417 421 0.319727 GCCTCTGCATCTGATCGAGG 60.320 60.000 16.87 16.87 43.18 4.63
418 422 0.319727 GGCCTCTGCATCTGATCGAG 60.320 60.000 0.00 0.00 40.13 4.04
419 423 1.744639 GGCCTCTGCATCTGATCGA 59.255 57.895 0.00 0.00 40.13 3.59
421 425 1.301558 CCGGCCTCTGCATCTGATC 60.302 63.158 0.00 0.00 40.13 2.92
422 426 1.340399 TTCCGGCCTCTGCATCTGAT 61.340 55.000 0.00 0.00 40.13 2.90
423 427 1.964608 CTTCCGGCCTCTGCATCTGA 61.965 60.000 0.00 0.00 40.13 3.27
424 428 1.523258 CTTCCGGCCTCTGCATCTG 60.523 63.158 0.00 0.00 40.13 2.90
425 429 1.684386 CTCTTCCGGCCTCTGCATCT 61.684 60.000 0.00 0.00 40.13 2.90
457 462 6.494146 TCCGGGTCATGGTTTTATTTTTACTT 59.506 34.615 0.00 0.00 0.00 2.24
458 463 6.011481 TCCGGGTCATGGTTTTATTTTTACT 58.989 36.000 0.00 0.00 0.00 2.24
460 465 6.912951 TTCCGGGTCATGGTTTTATTTTTA 57.087 33.333 0.00 0.00 0.00 1.52
461 466 5.810080 TTCCGGGTCATGGTTTTATTTTT 57.190 34.783 0.00 0.00 0.00 1.94
462 467 5.810080 TTTCCGGGTCATGGTTTTATTTT 57.190 34.783 0.00 0.00 0.00 1.82
463 468 5.810080 TTTTCCGGGTCATGGTTTTATTT 57.190 34.783 0.00 0.00 0.00 1.40
464 469 5.305902 AGTTTTTCCGGGTCATGGTTTTATT 59.694 36.000 0.00 0.00 0.00 1.40
465 470 4.836175 AGTTTTTCCGGGTCATGGTTTTAT 59.164 37.500 0.00 0.00 0.00 1.40
485 490 1.808891 GCGTGTGTGTGGGAGTAAGTT 60.809 52.381 0.00 0.00 0.00 2.66
488 493 0.531090 GTGCGTGTGTGTGGGAGTAA 60.531 55.000 0.00 0.00 0.00 2.24
504 519 0.789383 GTGAATTAGTGCGTGCGTGC 60.789 55.000 0.00 0.00 0.00 5.34
508 523 2.416547 AGTGATGTGAATTAGTGCGTGC 59.583 45.455 0.00 0.00 0.00 5.34
512 527 3.426695 GGTGCAGTGATGTGAATTAGTGC 60.427 47.826 0.00 3.96 39.35 4.40
547 562 2.971660 TTCTCTTTGTCGTGTCACCA 57.028 45.000 0.00 0.00 0.00 4.17
548 563 3.869246 TCTTTTCTCTTTGTCGTGTCACC 59.131 43.478 0.00 0.00 0.00 4.02
549 564 4.025647 CCTCTTTTCTCTTTGTCGTGTCAC 60.026 45.833 0.00 0.00 0.00 3.67
585 600 0.674581 TAGTGGATGCAGCACACAGC 60.675 55.000 20.54 5.99 46.19 4.40
605 626 0.178533 ATTTGGCGCCATCATTTGGG 59.821 50.000 33.25 0.00 46.55 4.12
607 628 1.137479 AGGATTTGGCGCCATCATTTG 59.863 47.619 33.25 0.00 0.00 2.32
626 647 3.773560 TCAAAAGGGGTTGGGTGATTAG 58.226 45.455 0.00 0.00 0.00 1.73
627 648 3.905493 TCAAAAGGGGTTGGGTGATTA 57.095 42.857 0.00 0.00 0.00 1.75
628 649 2.785357 TCAAAAGGGGTTGGGTGATT 57.215 45.000 0.00 0.00 0.00 2.57
629 650 2.785357 TTCAAAAGGGGTTGGGTGAT 57.215 45.000 0.00 0.00 0.00 3.06
699 730 1.681229 ATGGGGGTTGCCTTTCTCTA 58.319 50.000 0.00 0.00 0.00 2.43
709 747 9.981114 GACTAATTGATTTTTATATGGGGGTTG 57.019 33.333 0.00 0.00 0.00 3.77
720 758 8.044309 TGATCTCCGTGGACTAATTGATTTTTA 58.956 33.333 0.00 0.00 0.00 1.52
726 767 5.359756 CAATGATCTCCGTGGACTAATTGA 58.640 41.667 0.00 0.00 0.00 2.57
740 781 5.306394 TGGAGATGAATCAGCAATGATCTC 58.694 41.667 0.07 0.33 35.38 2.75
746 787 5.535406 GGAGAATTGGAGATGAATCAGCAAT 59.465 40.000 0.07 0.00 0.00 3.56
749 790 4.458397 TGGAGAATTGGAGATGAATCAGC 58.542 43.478 0.00 0.00 0.00 4.26
756 797 3.881688 GGTGTCATGGAGAATTGGAGATG 59.118 47.826 0.00 0.00 0.00 2.90
761 802 2.113860 ACGGTGTCATGGAGAATTGG 57.886 50.000 0.00 0.00 0.00 3.16
762 803 3.861840 AGTACGGTGTCATGGAGAATTG 58.138 45.455 0.00 0.00 0.00 2.32
763 804 4.142004 GGTAGTACGGTGTCATGGAGAATT 60.142 45.833 0.00 0.00 0.00 2.17
764 805 3.383825 GGTAGTACGGTGTCATGGAGAAT 59.616 47.826 0.00 0.00 0.00 2.40
765 806 2.756760 GGTAGTACGGTGTCATGGAGAA 59.243 50.000 0.00 0.00 0.00 2.87
766 807 2.291089 TGGTAGTACGGTGTCATGGAGA 60.291 50.000 0.00 0.00 0.00 3.71
767 808 2.097036 TGGTAGTACGGTGTCATGGAG 58.903 52.381 0.00 0.00 0.00 3.86
768 809 2.219080 TGGTAGTACGGTGTCATGGA 57.781 50.000 0.00 0.00 0.00 3.41
775 816 4.320870 AGGTTGATTTTGGTAGTACGGTG 58.679 43.478 0.00 0.00 0.00 4.94
792 833 3.243636 GCAGGGCATCATCAAATAGGTTG 60.244 47.826 0.00 0.00 38.71 3.77
814 855 1.152567 AGAGGGAGAGCGATGGAGG 60.153 63.158 0.00 0.00 0.00 4.30
819 860 1.398958 GGAAGCAGAGGGAGAGCGAT 61.399 60.000 0.00 0.00 0.00 4.58
822 863 1.264045 ACAGGAAGCAGAGGGAGAGC 61.264 60.000 0.00 0.00 0.00 4.09
823 864 0.823460 GACAGGAAGCAGAGGGAGAG 59.177 60.000 0.00 0.00 0.00 3.20
824 865 0.411452 AGACAGGAAGCAGAGGGAGA 59.589 55.000 0.00 0.00 0.00 3.71
828 869 2.566724 AGAGAAAGACAGGAAGCAGAGG 59.433 50.000 0.00 0.00 0.00 3.69
837 878 3.737850 ACAGAAAGCAGAGAAAGACAGG 58.262 45.455 0.00 0.00 0.00 4.00
844 885 5.304101 AGAGAAAGAGACAGAAAGCAGAGAA 59.696 40.000 0.00 0.00 0.00 2.87
863 971 2.629002 GCAAGGTTTGGCGAGAGAA 58.371 52.632 0.00 0.00 0.00 2.87
870 978 0.809636 AAAGCAACGCAAGGTTTGGC 60.810 50.000 0.00 0.00 46.39 4.52
882 990 2.227626 GAGGAGAGCAAAGGAAAGCAAC 59.772 50.000 0.00 0.00 0.00 4.17
910 1022 1.184431 TGGGTCGGCGTGTCTAATAA 58.816 50.000 6.85 0.00 0.00 1.40
914 1033 1.180456 TTCTTGGGTCGGCGTGTCTA 61.180 55.000 6.85 0.00 0.00 2.59
926 1045 1.273327 GAATGGTGTTGCCTTCTTGGG 59.727 52.381 0.00 0.00 38.35 4.12
934 1053 1.537202 GTGAGACAGAATGGTGTTGCC 59.463 52.381 0.00 0.00 43.62 4.52
949 1068 0.317160 CAGTACCGTGCAAGGTGAGA 59.683 55.000 31.37 11.54 45.54 3.27
953 1072 2.430382 CGGACAGTACCGTGCAAGGT 62.430 60.000 27.48 27.48 46.70 3.50
954 1073 1.736645 CGGACAGTACCGTGCAAGG 60.737 63.158 17.83 17.83 46.70 3.61
955 1074 3.856508 CGGACAGTACCGTGCAAG 58.143 61.111 1.50 0.00 46.70 4.01
962 1112 2.202401 GCGACGACGGACAGTACC 60.202 66.667 9.67 0.00 40.15 3.34
966 1116 4.477975 GGAGGCGACGACGGACAG 62.478 72.222 9.67 0.00 40.15 3.51
979 1129 3.073735 AGCCGAGTGAGCTGGAGG 61.074 66.667 0.00 0.00 39.69 4.30
1002 1161 2.184579 CGGCGGTCCTTCTCCTTC 59.815 66.667 0.00 0.00 0.00 3.46
1003 1162 4.083862 GCGGCGGTCCTTCTCCTT 62.084 66.667 9.78 0.00 0.00 3.36
1005 1164 4.821589 CTGCGGCGGTCCTTCTCC 62.822 72.222 9.78 0.00 0.00 3.71
1030 1189 1.341156 CCGATGGAGAAGGGGAAGCT 61.341 60.000 0.00 0.00 0.00 3.74
1118 1295 4.974438 AGGAGGGGTTGTCGGCCA 62.974 66.667 2.24 0.00 0.00 5.36
1187 1373 7.381079 CGTGATACGAATTAATTAGGTATGCG 58.619 38.462 20.64 19.23 46.05 4.73
1215 1401 4.891992 ATATGTACTGCCTGTGGTATCC 57.108 45.455 0.00 0.00 0.00 2.59
1219 1406 3.028850 ACGTATATGTACTGCCTGTGGT 58.971 45.455 0.00 0.00 0.00 4.16
1229 1428 6.432936 TGCTGCTGTTAGTACGTATATGTAC 58.567 40.000 22.53 22.53 44.00 2.90
1239 1440 2.074547 TCGGTTGCTGCTGTTAGTAC 57.925 50.000 0.00 0.00 0.00 2.73
1240 1441 2.734175 CGATCGGTTGCTGCTGTTAGTA 60.734 50.000 7.38 0.00 0.00 1.82
1241 1442 1.726853 GATCGGTTGCTGCTGTTAGT 58.273 50.000 0.00 0.00 0.00 2.24
1242 1443 0.647410 CGATCGGTTGCTGCTGTTAG 59.353 55.000 7.38 0.00 0.00 2.34
1257 1459 4.253685 TCTCTGAAAATGGACAACCGATC 58.746 43.478 0.00 0.00 39.42 3.69
1264 1466 2.354103 CGCCTCTCTCTGAAAATGGACA 60.354 50.000 0.00 0.00 0.00 4.02
1270 1475 1.079819 CGGCGCCTCTCTCTGAAAA 60.080 57.895 26.68 0.00 0.00 2.29
1329 1556 3.296054 GCCGAGACGATCCCCGAT 61.296 66.667 0.00 0.00 41.76 4.18
1359 1586 1.280421 GTCTTGATCCCCTTGAGCAGT 59.720 52.381 0.00 0.00 41.13 4.40
1403 1630 3.490761 CCGCTCCTCTTCATCTTCTTCTC 60.491 52.174 0.00 0.00 0.00 2.87
1404 1631 2.430332 CCGCTCCTCTTCATCTTCTTCT 59.570 50.000 0.00 0.00 0.00 2.85
1638 1880 3.395273 TGAGGTGGATTATGATGCATGGA 59.605 43.478 2.46 0.00 35.96 3.41
1664 1914 2.876645 CGGTTGCTCGCTCGAGTC 60.877 66.667 15.13 12.30 43.70 3.36
1697 1947 1.609072 CACAGTCTTCGACCTCAGTCA 59.391 52.381 0.00 0.00 43.73 3.41
1698 1948 1.609555 ACACAGTCTTCGACCTCAGTC 59.390 52.381 0.00 0.00 39.83 3.51
1708 1958 2.086054 CTGGGTGCTACACAGTCTTC 57.914 55.000 9.56 0.00 44.39 2.87
1808 2134 8.286800 ACAGAGACGAATATATTCTCTTCTTCG 58.713 37.037 20.47 10.66 42.89 3.79
1829 2155 0.799917 CACCGCGATGACAGACAGAG 60.800 60.000 8.23 0.00 0.00 3.35
1860 2186 2.203337 TGACCCCACTGTTGCAGC 60.203 61.111 0.00 0.00 34.37 5.25
1873 2199 1.614241 ATAGCTGGTGACCGGTGACC 61.614 60.000 33.67 33.67 37.37 4.02
1874 2200 0.179108 GATAGCTGGTGACCGGTGAC 60.179 60.000 14.63 15.81 31.34 3.67
1875 2201 1.327690 GGATAGCTGGTGACCGGTGA 61.328 60.000 14.63 0.00 31.34 4.02
1876 2202 1.144057 GGATAGCTGGTGACCGGTG 59.856 63.158 14.63 0.00 31.34 4.94
1877 2203 0.617820 AAGGATAGCTGGTGACCGGT 60.618 55.000 6.92 6.92 31.34 5.28
1878 2204 0.179073 CAAGGATAGCTGGTGACCGG 60.179 60.000 5.96 5.96 0.00 5.28
1879 2205 0.811616 GCAAGGATAGCTGGTGACCG 60.812 60.000 0.00 0.00 0.00 4.79
1908 2240 4.883585 TCTCACCAACCAGATCATAATTGC 59.116 41.667 0.00 0.00 0.00 3.56
1975 2310 2.237643 ACACACACAGGTCAAGGTAACA 59.762 45.455 0.00 0.00 41.41 2.41
1992 2327 1.664302 CGCAAAACACACACACACACA 60.664 47.619 0.00 0.00 0.00 3.72
1993 2328 0.981240 CGCAAAACACACACACACAC 59.019 50.000 0.00 0.00 0.00 3.82
1999 2334 1.400494 ACTCCTTCGCAAAACACACAC 59.600 47.619 0.00 0.00 0.00 3.82
2000 2335 1.668751 GACTCCTTCGCAAAACACACA 59.331 47.619 0.00 0.00 0.00 3.72
2001 2336 1.668751 TGACTCCTTCGCAAAACACAC 59.331 47.619 0.00 0.00 0.00 3.82
2002 2337 2.031258 TGACTCCTTCGCAAAACACA 57.969 45.000 0.00 0.00 0.00 3.72
2003 2338 3.626028 ATTGACTCCTTCGCAAAACAC 57.374 42.857 0.00 0.00 0.00 3.32
2004 2339 3.303725 CGAATTGACTCCTTCGCAAAACA 60.304 43.478 0.00 0.00 37.96 2.83
2005 2340 3.226347 CGAATTGACTCCTTCGCAAAAC 58.774 45.455 0.00 0.00 37.96 2.43
2006 2341 2.225491 CCGAATTGACTCCTTCGCAAAA 59.775 45.455 0.00 0.00 42.11 2.44
2007 2342 1.804151 CCGAATTGACTCCTTCGCAAA 59.196 47.619 0.00 0.00 42.11 3.68
2008 2343 1.438651 CCGAATTGACTCCTTCGCAA 58.561 50.000 0.00 0.00 42.11 4.85
2009 2344 1.019278 GCCGAATTGACTCCTTCGCA 61.019 55.000 0.00 0.00 42.11 5.10
2010 2345 0.741221 AGCCGAATTGACTCCTTCGC 60.741 55.000 0.00 0.00 42.11 4.70
2011 2346 1.394917 CAAGCCGAATTGACTCCTTCG 59.605 52.381 0.00 0.00 42.86 3.79
2012 2347 2.160417 CACAAGCCGAATTGACTCCTTC 59.840 50.000 6.57 0.00 34.20 3.46
2013 2348 2.154462 CACAAGCCGAATTGACTCCTT 58.846 47.619 6.57 0.00 34.20 3.36
2014 2349 1.072331 ACACAAGCCGAATTGACTCCT 59.928 47.619 6.57 0.00 34.20 3.69
2015 2350 1.523758 ACACAAGCCGAATTGACTCC 58.476 50.000 6.57 0.00 34.20 3.85
2016 2351 7.438459 AGTTATATACACAAGCCGAATTGACTC 59.562 37.037 6.57 0.00 34.20 3.36
2017 2352 7.272978 AGTTATATACACAAGCCGAATTGACT 58.727 34.615 6.57 0.00 34.20 3.41
2018 2353 7.438459 AGAGTTATATACACAAGCCGAATTGAC 59.562 37.037 6.57 0.00 34.20 3.18
2019 2354 7.497595 AGAGTTATATACACAAGCCGAATTGA 58.502 34.615 6.57 0.00 34.20 2.57
2020 2355 7.095607 GGAGAGTTATATACACAAGCCGAATTG 60.096 40.741 0.00 0.00 36.22 2.32
2021 2356 6.929606 GGAGAGTTATATACACAAGCCGAATT 59.070 38.462 0.00 0.00 0.00 2.17
2022 2357 6.267928 AGGAGAGTTATATACACAAGCCGAAT 59.732 38.462 0.00 0.00 0.00 3.34
2023 2358 5.597182 AGGAGAGTTATATACACAAGCCGAA 59.403 40.000 0.00 0.00 0.00 4.30
2024 2359 5.138276 AGGAGAGTTATATACACAAGCCGA 58.862 41.667 0.00 0.00 0.00 5.54
2025 2360 5.455056 AGGAGAGTTATATACACAAGCCG 57.545 43.478 0.00 0.00 0.00 5.52
2026 2361 9.262358 CTAAAAGGAGAGTTATATACACAAGCC 57.738 37.037 0.00 0.00 0.00 4.35
2058 2393 3.136763 CGCCAGCAGTTCATCATCTATT 58.863 45.455 0.00 0.00 0.00 1.73
2071 2406 1.514678 TAGCAAAACACCGCCAGCAG 61.515 55.000 0.00 0.00 0.00 4.24
2074 2409 0.240945 CCTTAGCAAAACACCGCCAG 59.759 55.000 0.00 0.00 0.00 4.85
2077 2412 2.124122 CAAACCTTAGCAAAACACCGC 58.876 47.619 0.00 0.00 0.00 5.68
2078 2413 3.112580 CACAAACCTTAGCAAAACACCG 58.887 45.455 0.00 0.00 0.00 4.94
2088 2423 5.514274 ACACCATTTGTCACAAACCTTAG 57.486 39.130 4.73 0.00 29.79 2.18
2090 2425 4.382577 GGAACACCATTTGTCACAAACCTT 60.383 41.667 4.73 0.00 37.51 3.50
2099 2434 1.069227 GCGACAGGAACACCATTTGTC 60.069 52.381 0.00 0.00 37.51 3.18
2113 2449 2.745100 AGTGCCATGCAGCGACAG 60.745 61.111 0.00 0.00 40.08 3.51
2114 2450 2.743538 GAGTGCCATGCAGCGACA 60.744 61.111 0.00 0.00 40.08 4.35
2120 2456 0.695462 ATAGGAGGGAGTGCCATGCA 60.695 55.000 2.50 0.00 38.93 3.96
2185 2521 8.535335 AGTATGTTTGTTCACTCATATCAGTCT 58.465 33.333 0.00 0.00 0.00 3.24
2186 2522 8.709386 AGTATGTTTGTTCACTCATATCAGTC 57.291 34.615 0.00 0.00 0.00 3.51
2226 2562 9.316730 GGTCTAACATATTCGTAAACCAATGTA 57.683 33.333 0.00 0.00 0.00 2.29
2227 2563 7.825270 TGGTCTAACATATTCGTAAACCAATGT 59.175 33.333 0.00 0.00 31.67 2.71
2228 2564 8.203937 TGGTCTAACATATTCGTAAACCAATG 57.796 34.615 0.00 0.00 31.67 2.82
2229 2565 8.974060 ATGGTCTAACATATTCGTAAACCAAT 57.026 30.769 0.00 0.00 37.76 3.16
2230 2566 8.262227 AGATGGTCTAACATATTCGTAAACCAA 58.738 33.333 0.00 0.00 37.76 3.67
2231 2567 7.788026 AGATGGTCTAACATATTCGTAAACCA 58.212 34.615 0.00 0.00 38.52 3.67
2232 2568 8.658499 AAGATGGTCTAACATATTCGTAAACC 57.342 34.615 0.00 0.00 26.63 3.27
2248 2584 9.359653 CCTCCATTCAAAAATATAAGATGGTCT 57.640 33.333 0.00 0.00 0.00 3.85
2249 2585 8.579863 CCCTCCATTCAAAAATATAAGATGGTC 58.420 37.037 0.00 0.00 0.00 4.02
2250 2586 8.067488 ACCCTCCATTCAAAAATATAAGATGGT 58.933 33.333 0.00 0.00 0.00 3.55
2251 2587 8.362639 CACCCTCCATTCAAAAATATAAGATGG 58.637 37.037 0.00 0.00 0.00 3.51
2252 2588 8.917088 ACACCCTCCATTCAAAAATATAAGATG 58.083 33.333 0.00 0.00 0.00 2.90
2254 2590 9.983024 TTACACCCTCCATTCAAAAATATAAGA 57.017 29.630 0.00 0.00 0.00 2.10
2257 2593 9.928618 TGATTACACCCTCCATTCAAAAATATA 57.071 29.630 0.00 0.00 0.00 0.86
2258 2594 8.837099 TGATTACACCCTCCATTCAAAAATAT 57.163 30.769 0.00 0.00 0.00 1.28
2259 2595 8.837099 ATGATTACACCCTCCATTCAAAAATA 57.163 30.769 0.00 0.00 0.00 1.40
2260 2596 7.738437 ATGATTACACCCTCCATTCAAAAAT 57.262 32.000 0.00 0.00 0.00 1.82
2261 2597 7.552050 AATGATTACACCCTCCATTCAAAAA 57.448 32.000 0.00 0.00 0.00 1.94
2262 2598 6.127758 CGAATGATTACACCCTCCATTCAAAA 60.128 38.462 0.00 0.00 41.67 2.44
2263 2599 5.356751 CGAATGATTACACCCTCCATTCAAA 59.643 40.000 0.00 0.00 41.67 2.69
2264 2600 4.881273 CGAATGATTACACCCTCCATTCAA 59.119 41.667 0.00 0.00 41.67 2.69
2265 2601 4.450976 CGAATGATTACACCCTCCATTCA 58.549 43.478 0.00 0.00 41.67 2.57
2266 2602 3.251004 GCGAATGATTACACCCTCCATTC 59.749 47.826 0.00 0.00 39.52 2.67
2267 2603 3.214328 GCGAATGATTACACCCTCCATT 58.786 45.455 0.00 0.00 0.00 3.16
2268 2604 2.172505 TGCGAATGATTACACCCTCCAT 59.827 45.455 0.00 0.00 0.00 3.41
2269 2605 1.557371 TGCGAATGATTACACCCTCCA 59.443 47.619 0.00 0.00 0.00 3.86
2270 2606 2.325583 TGCGAATGATTACACCCTCC 57.674 50.000 0.00 0.00 0.00 4.30
2271 2607 4.695217 TTTTGCGAATGATTACACCCTC 57.305 40.909 0.00 0.00 0.00 4.30
2292 2628 5.162980 ACCTCTTACACCCTCCATTCTTTTT 60.163 40.000 0.00 0.00 0.00 1.94
2293 2629 4.354087 ACCTCTTACACCCTCCATTCTTTT 59.646 41.667 0.00 0.00 0.00 2.27
2294 2630 3.916989 ACCTCTTACACCCTCCATTCTTT 59.083 43.478 0.00 0.00 0.00 2.52
2295 2631 3.532102 ACCTCTTACACCCTCCATTCTT 58.468 45.455 0.00 0.00 0.00 2.52
2296 2632 3.207044 ACCTCTTACACCCTCCATTCT 57.793 47.619 0.00 0.00 0.00 2.40
2297 2633 4.262079 CGATACCTCTTACACCCTCCATTC 60.262 50.000 0.00 0.00 0.00 2.67
2298 2634 3.641906 CGATACCTCTTACACCCTCCATT 59.358 47.826 0.00 0.00 0.00 3.16
2299 2635 3.231818 CGATACCTCTTACACCCTCCAT 58.768 50.000 0.00 0.00 0.00 3.41
2300 2636 2.024655 ACGATACCTCTTACACCCTCCA 60.025 50.000 0.00 0.00 0.00 3.86
2301 2637 2.622470 GACGATACCTCTTACACCCTCC 59.378 54.545 0.00 0.00 0.00 4.30
2302 2638 2.290093 CGACGATACCTCTTACACCCTC 59.710 54.545 0.00 0.00 0.00 4.30
2303 2639 2.295885 CGACGATACCTCTTACACCCT 58.704 52.381 0.00 0.00 0.00 4.34
2304 2640 1.336125 CCGACGATACCTCTTACACCC 59.664 57.143 0.00 0.00 0.00 4.61
2305 2641 2.292267 TCCGACGATACCTCTTACACC 58.708 52.381 0.00 0.00 0.00 4.16
2306 2642 3.314635 ACATCCGACGATACCTCTTACAC 59.685 47.826 0.00 0.00 0.00 2.90
2307 2643 3.548770 ACATCCGACGATACCTCTTACA 58.451 45.455 0.00 0.00 0.00 2.41
2308 2644 4.564940 AACATCCGACGATACCTCTTAC 57.435 45.455 0.00 0.00 0.00 2.34
2309 2645 6.889301 ATTAACATCCGACGATACCTCTTA 57.111 37.500 0.00 0.00 0.00 2.10
2310 2646 5.786264 ATTAACATCCGACGATACCTCTT 57.214 39.130 0.00 0.00 0.00 2.85
2311 2647 5.786264 AATTAACATCCGACGATACCTCT 57.214 39.130 0.00 0.00 0.00 3.69
2312 2648 6.839820 AAAATTAACATCCGACGATACCTC 57.160 37.500 0.00 0.00 0.00 3.85
2346 2682 7.774625 AGAAAGATTTTGCCTCCATTTCAAAAA 59.225 29.630 3.91 0.00 41.26 1.94
2347 2683 7.281841 AGAAAGATTTTGCCTCCATTTCAAAA 58.718 30.769 0.00 0.00 41.86 2.44
2348 2684 6.829849 AGAAAGATTTTGCCTCCATTTCAAA 58.170 32.000 0.00 0.00 0.00 2.69
2349 2685 6.423776 AGAAAGATTTTGCCTCCATTTCAA 57.576 33.333 0.00 0.00 0.00 2.69
2350 2686 7.396907 TGATAGAAAGATTTTGCCTCCATTTCA 59.603 33.333 0.00 0.00 0.00 2.69
2351 2687 7.775120 TGATAGAAAGATTTTGCCTCCATTTC 58.225 34.615 0.00 0.00 0.00 2.17
2352 2688 7.722949 TGATAGAAAGATTTTGCCTCCATTT 57.277 32.000 0.00 0.00 0.00 2.32
2353 2689 7.015001 GGATGATAGAAAGATTTTGCCTCCATT 59.985 37.037 0.00 0.00 0.00 3.16
2354 2690 6.492772 GGATGATAGAAAGATTTTGCCTCCAT 59.507 38.462 0.00 0.00 0.00 3.41
2355 2691 5.829924 GGATGATAGAAAGATTTTGCCTCCA 59.170 40.000 0.00 0.00 0.00 3.86
2356 2692 5.829924 TGGATGATAGAAAGATTTTGCCTCC 59.170 40.000 0.00 0.00 0.00 4.30
2357 2693 6.949352 TGGATGATAGAAAGATTTTGCCTC 57.051 37.500 0.00 0.00 0.00 4.70
2358 2694 7.909485 AATGGATGATAGAAAGATTTTGCCT 57.091 32.000 0.00 0.00 0.00 4.75
2359 2695 8.854117 ACTAATGGATGATAGAAAGATTTTGCC 58.146 33.333 0.00 0.00 0.00 4.52
2383 2719 9.984190 ACGAAAAACTCTATTTCTCTCTTAACT 57.016 29.630 0.00 0.00 35.19 2.24
2388 2724 9.760077 TGTAAACGAAAAACTCTATTTCTCTCT 57.240 29.630 0.00 0.00 35.19 3.10
2395 2731 9.815936 CCGTATTTGTAAACGAAAAACTCTATT 57.184 29.630 0.00 0.00 41.55 1.73
2396 2732 8.992073 ACCGTATTTGTAAACGAAAAACTCTAT 58.008 29.630 0.00 0.00 41.55 1.98
2397 2733 8.274939 CACCGTATTTGTAAACGAAAAACTCTA 58.725 33.333 0.00 0.00 41.55 2.43
2398 2734 7.127686 CACCGTATTTGTAAACGAAAAACTCT 58.872 34.615 0.00 0.00 41.55 3.24
2399 2735 6.357766 CCACCGTATTTGTAAACGAAAAACTC 59.642 38.462 0.00 0.00 41.55 3.01
2400 2736 6.200808 CCACCGTATTTGTAAACGAAAAACT 58.799 36.000 0.00 0.00 41.55 2.66
2401 2737 5.108292 GCCACCGTATTTGTAAACGAAAAAC 60.108 40.000 0.00 0.00 41.55 2.43
2402 2738 4.974888 GCCACCGTATTTGTAAACGAAAAA 59.025 37.500 0.00 0.00 41.55 1.94
2403 2739 4.535116 GCCACCGTATTTGTAAACGAAAA 58.465 39.130 0.00 0.00 41.55 2.29
2404 2740 3.058363 GGCCACCGTATTTGTAAACGAAA 60.058 43.478 0.00 0.00 41.55 3.46
2405 2741 2.483491 GGCCACCGTATTTGTAAACGAA 59.517 45.455 0.00 0.00 41.55 3.85
2406 2742 2.075338 GGCCACCGTATTTGTAAACGA 58.925 47.619 0.00 0.00 41.55 3.85
2407 2743 1.805345 TGGCCACCGTATTTGTAAACG 59.195 47.619 0.00 0.00 38.80 3.60
2408 2744 3.253921 ACTTGGCCACCGTATTTGTAAAC 59.746 43.478 3.88 0.00 0.00 2.01
2409 2745 3.488363 ACTTGGCCACCGTATTTGTAAA 58.512 40.909 3.88 0.00 0.00 2.01
2410 2746 3.075884 GACTTGGCCACCGTATTTGTAA 58.924 45.455 3.88 0.00 0.00 2.41
2411 2747 2.616001 GGACTTGGCCACCGTATTTGTA 60.616 50.000 3.88 0.00 0.00 2.41
2412 2748 1.530323 GACTTGGCCACCGTATTTGT 58.470 50.000 3.88 0.00 0.00 2.83
2413 2749 0.808755 GGACTTGGCCACCGTATTTG 59.191 55.000 3.88 0.00 0.00 2.32
2414 2750 0.323087 GGGACTTGGCCACCGTATTT 60.323 55.000 3.88 0.00 0.00 1.40
2415 2751 1.301954 GGGACTTGGCCACCGTATT 59.698 57.895 3.88 0.00 0.00 1.89
2416 2752 2.676265 GGGGACTTGGCCACCGTAT 61.676 63.158 3.88 0.00 0.00 3.06
2417 2753 3.324108 GGGGACTTGGCCACCGTA 61.324 66.667 3.88 0.00 0.00 4.02
2421 2757 4.966787 TTGCGGGGACTTGGCCAC 62.967 66.667 3.88 0.00 0.00 5.01
2422 2758 3.740495 TTTTGCGGGGACTTGGCCA 62.740 57.895 0.00 0.00 0.00 5.36
2423 2759 2.503382 TTTTTGCGGGGACTTGGCC 61.503 57.895 0.00 0.00 0.00 5.36
2424 2760 3.133946 TTTTTGCGGGGACTTGGC 58.866 55.556 0.00 0.00 0.00 4.52
2442 2778 1.066929 GGATGCTTGGCCATCGTTTTT 60.067 47.619 6.09 0.00 41.95 1.94
2443 2779 0.532115 GGATGCTTGGCCATCGTTTT 59.468 50.000 6.09 0.00 41.95 2.43
2444 2780 0.323725 AGGATGCTTGGCCATCGTTT 60.324 50.000 6.09 0.00 41.95 3.60
2445 2781 1.033746 CAGGATGCTTGGCCATCGTT 61.034 55.000 6.09 0.00 41.95 3.85
2446 2782 1.452651 CAGGATGCTTGGCCATCGT 60.453 57.895 6.09 2.51 41.95 3.73
2447 2783 3.428797 CAGGATGCTTGGCCATCG 58.571 61.111 6.09 1.37 41.95 3.84
2482 2818 4.415150 ATGGCACCAGCACCGGAG 62.415 66.667 9.46 0.00 44.61 4.63
2483 2819 4.408821 GATGGCACCAGCACCGGA 62.409 66.667 9.46 0.00 44.61 5.14
2484 2820 4.720902 TGATGGCACCAGCACCGG 62.721 66.667 2.92 0.00 44.61 5.28
2485 2821 3.129502 CTGATGGCACCAGCACCG 61.130 66.667 2.92 0.00 44.61 4.94
2486 2822 2.042831 GTCTGATGGCACCAGCACC 61.043 63.158 3.20 0.00 44.61 5.01
2487 2823 2.393768 CGTCTGATGGCACCAGCAC 61.394 63.158 3.20 2.73 44.61 4.40
2488 2824 2.046988 CGTCTGATGGCACCAGCA 60.047 61.111 3.20 7.50 44.61 4.41
2489 2825 2.103042 GTCGTCTGATGGCACCAGC 61.103 63.158 3.20 0.00 41.10 4.85
2490 2826 1.807165 CGTCGTCTGATGGCACCAG 60.807 63.158 1.14 1.14 0.00 4.00
2491 2827 1.604147 ATCGTCGTCTGATGGCACCA 61.604 55.000 2.04 0.00 0.00 4.17
2492 2828 1.141881 ATCGTCGTCTGATGGCACC 59.858 57.895 2.04 0.00 0.00 5.01
2493 2829 0.179137 TCATCGTCGTCTGATGGCAC 60.179 55.000 2.04 0.00 42.73 5.01
2494 2830 0.746659 ATCATCGTCGTCTGATGGCA 59.253 50.000 10.75 0.00 42.73 4.92
2495 2831 1.413382 GATCATCGTCGTCTGATGGC 58.587 55.000 14.73 0.00 42.73 4.40
2496 2832 1.664302 CGGATCATCGTCGTCTGATGG 60.664 57.143 14.73 6.07 42.73 3.51
2497 2833 1.264288 TCGGATCATCGTCGTCTGATG 59.736 52.381 14.73 7.61 43.62 3.07
2498 2834 1.594331 TCGGATCATCGTCGTCTGAT 58.406 50.000 11.18 11.18 34.86 2.90
2499 2835 1.531578 GATCGGATCATCGTCGTCTGA 59.468 52.381 13.02 0.00 0.00 3.27
2500 2836 1.723067 CGATCGGATCATCGTCGTCTG 60.723 57.143 17.53 0.00 40.72 3.51
2501 2837 0.513385 CGATCGGATCATCGTCGTCT 59.487 55.000 17.53 0.00 40.72 4.18
2502 2838 2.988931 CGATCGGATCATCGTCGTC 58.011 57.895 17.53 0.00 40.72 4.20
2508 2844 0.591659 TCGTGGACGATCGGATCATC 59.408 55.000 20.98 11.82 44.22 2.92
2509 2845 2.715536 TCGTGGACGATCGGATCAT 58.284 52.632 20.98 2.08 44.22 2.45
2510 2846 4.228899 TCGTGGACGATCGGATCA 57.771 55.556 20.98 11.34 44.22 2.92
2517 2853 7.872962 ATCATTGGTTGATGTCGTGGACGAT 62.873 44.000 4.99 0.00 43.60 3.73
2518 2854 6.654975 ATCATTGGTTGATGTCGTGGACGA 62.655 45.833 0.00 0.00 43.60 4.20
2519 2855 1.128507 CATTGGTTGATGTCGTGGACG 59.871 52.381 0.00 0.00 41.45 4.79
2520 2856 2.422597 TCATTGGTTGATGTCGTGGAC 58.577 47.619 0.00 0.00 0.00 4.02
2521 2857 2.849294 TCATTGGTTGATGTCGTGGA 57.151 45.000 0.00 0.00 0.00 4.02
2522 2858 3.312421 GGTATCATTGGTTGATGTCGTGG 59.688 47.826 0.00 0.00 44.90 4.94
2523 2859 4.191544 AGGTATCATTGGTTGATGTCGTG 58.808 43.478 0.00 0.00 44.90 4.35
2524 2860 4.442706 GAGGTATCATTGGTTGATGTCGT 58.557 43.478 0.00 0.00 44.90 4.34
2525 2861 3.490896 CGAGGTATCATTGGTTGATGTCG 59.509 47.826 0.00 1.72 44.90 4.35
2526 2862 3.248602 GCGAGGTATCATTGGTTGATGTC 59.751 47.826 0.00 0.00 44.90 3.06
2527 2863 3.206150 GCGAGGTATCATTGGTTGATGT 58.794 45.455 0.00 0.00 44.90 3.06
2528 2864 2.549754 GGCGAGGTATCATTGGTTGATG 59.450 50.000 0.00 0.00 44.90 3.07
2529 2865 2.172505 TGGCGAGGTATCATTGGTTGAT 59.827 45.455 0.00 0.00 46.86 2.57
2530 2866 1.557371 TGGCGAGGTATCATTGGTTGA 59.443 47.619 0.00 0.00 39.12 3.18
2531 2867 1.670811 GTGGCGAGGTATCATTGGTTG 59.329 52.381 0.00 0.00 0.00 3.77
2532 2868 1.742411 CGTGGCGAGGTATCATTGGTT 60.742 52.381 0.00 0.00 0.00 3.67
2533 2869 0.179084 CGTGGCGAGGTATCATTGGT 60.179 55.000 0.00 0.00 0.00 3.67
2534 2870 0.104120 TCGTGGCGAGGTATCATTGG 59.896 55.000 0.00 0.00 0.00 3.16
2535 2871 1.860950 CTTCGTGGCGAGGTATCATTG 59.139 52.381 0.00 0.00 37.14 2.82
2536 2872 1.202533 CCTTCGTGGCGAGGTATCATT 60.203 52.381 0.00 0.00 37.14 2.57
2537 2873 0.389391 CCTTCGTGGCGAGGTATCAT 59.611 55.000 0.00 0.00 37.14 2.45
2538 2874 0.681887 TCCTTCGTGGCGAGGTATCA 60.682 55.000 0.00 0.00 37.14 2.15
2539 2875 0.248949 GTCCTTCGTGGCGAGGTATC 60.249 60.000 0.00 0.00 37.14 2.24
2540 2876 0.683504 AGTCCTTCGTGGCGAGGTAT 60.684 55.000 0.00 0.00 37.14 2.73
2541 2877 0.896940 AAGTCCTTCGTGGCGAGGTA 60.897 55.000 0.00 0.00 37.14 3.08
2542 2878 2.207924 AAGTCCTTCGTGGCGAGGT 61.208 57.895 0.00 0.00 37.14 3.85
2543 2879 1.738099 CAAGTCCTTCGTGGCGAGG 60.738 63.158 0.00 0.00 37.14 4.63
2544 2880 0.242825 TACAAGTCCTTCGTGGCGAG 59.757 55.000 0.00 0.00 37.14 5.03
2545 2881 0.892755 ATACAAGTCCTTCGTGGCGA 59.107 50.000 0.00 0.00 35.26 5.54
2546 2882 0.999406 CATACAAGTCCTTCGTGGCG 59.001 55.000 0.00 0.00 35.26 5.69
2547 2883 0.727398 GCATACAAGTCCTTCGTGGC 59.273 55.000 0.00 0.00 35.26 5.01
2548 2884 0.999406 CGCATACAAGTCCTTCGTGG 59.001 55.000 0.00 0.00 37.10 4.94
2549 2885 0.999406 CCGCATACAAGTCCTTCGTG 59.001 55.000 0.00 0.00 0.00 4.35
2550 2886 0.108329 CCCGCATACAAGTCCTTCGT 60.108 55.000 0.00 0.00 0.00 3.85
2551 2887 1.429148 GCCCGCATACAAGTCCTTCG 61.429 60.000 0.00 0.00 0.00 3.79
2552 2888 1.095807 GGCCCGCATACAAGTCCTTC 61.096 60.000 0.00 0.00 0.00 3.46
2553 2889 1.077716 GGCCCGCATACAAGTCCTT 60.078 57.895 0.00 0.00 0.00 3.36
2554 2890 2.590092 GGCCCGCATACAAGTCCT 59.410 61.111 0.00 0.00 0.00 3.85
2555 2891 2.895372 CGGCCCGCATACAAGTCC 60.895 66.667 0.00 0.00 0.00 3.85
2571 2907 2.514592 ATTGACCCGATGGCAGCG 60.515 61.111 19.62 19.62 33.59 5.18
2572 2908 3.113745 CATTGACCCGATGGCAGC 58.886 61.111 0.00 0.00 33.59 5.25
2573 2909 2.484062 GGCATTGACCCGATGGCAG 61.484 63.158 13.75 0.00 46.15 4.85
2574 2910 2.440065 GGCATTGACCCGATGGCA 60.440 61.111 13.75 0.00 46.15 4.92
2575 2911 2.008268 CTTGGCATTGACCCGATGGC 62.008 60.000 12.25 12.25 46.78 4.40
2576 2912 2.008268 GCTTGGCATTGACCCGATGG 62.008 60.000 0.00 0.00 37.80 3.51
2577 2913 1.033746 AGCTTGGCATTGACCCGATG 61.034 55.000 0.00 0.00 0.00 3.84
2578 2914 0.323725 AAGCTTGGCATTGACCCGAT 60.324 50.000 0.00 0.00 0.00 4.18
2579 2915 0.960364 GAAGCTTGGCATTGACCCGA 60.960 55.000 2.10 0.00 0.00 5.14
2580 2916 0.962356 AGAAGCTTGGCATTGACCCG 60.962 55.000 2.10 0.00 0.00 5.28
2581 2917 0.529378 CAGAAGCTTGGCATTGACCC 59.471 55.000 2.10 0.00 0.00 4.46
2582 2918 0.529378 CCAGAAGCTTGGCATTGACC 59.471 55.000 2.10 0.00 0.00 4.02
2590 2926 0.394762 TGCCTATGCCAGAAGCTTGG 60.395 55.000 2.10 0.60 44.23 3.61
2591 2927 0.737219 GTGCCTATGCCAGAAGCTTG 59.263 55.000 2.10 0.00 44.23 4.01
2592 2928 0.394899 GGTGCCTATGCCAGAAGCTT 60.395 55.000 0.00 0.00 44.23 3.74
2593 2929 1.225704 GGTGCCTATGCCAGAAGCT 59.774 57.895 0.00 0.00 44.23 3.74
2594 2930 2.182842 CGGTGCCTATGCCAGAAGC 61.183 63.158 0.00 0.00 44.14 3.86
2595 2931 0.531532 CTCGGTGCCTATGCCAGAAG 60.532 60.000 0.00 0.00 36.33 2.85
2596 2932 1.522092 CTCGGTGCCTATGCCAGAA 59.478 57.895 0.00 0.00 36.33 3.02
2597 2933 2.434843 CCTCGGTGCCTATGCCAGA 61.435 63.158 0.00 0.00 36.33 3.86
2598 2934 2.109799 CCTCGGTGCCTATGCCAG 59.890 66.667 0.00 0.00 36.33 4.85
2599 2935 4.175337 GCCTCGGTGCCTATGCCA 62.175 66.667 0.00 0.00 36.33 4.92
2600 2936 3.866582 AGCCTCGGTGCCTATGCC 61.867 66.667 0.00 0.00 36.33 4.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.