Multiple sequence alignment - TraesCS5B01G535800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G535800 chr5B 100.000 3522 0 0 1 3522 691799749 691796228 0.000000e+00 6505.0
1 TraesCS5B01G535800 chr5B 82.333 1732 173 56 1083 2751 691825498 691823837 0.000000e+00 1380.0
2 TraesCS5B01G535800 chr5B 81.557 1708 186 69 1115 2752 691773896 691772248 0.000000e+00 1290.0
3 TraesCS5B01G535800 chr5B 83.661 1169 145 32 1618 2751 691942609 691941452 0.000000e+00 1059.0
4 TraesCS5B01G535800 chr5B 85.159 566 60 11 1057 1612 691943205 691942654 3.070000e-155 558.0
5 TraesCS5B01G535800 chr5B 80.758 343 30 18 745 1063 691774323 691773993 5.880000e-58 235.0
6 TraesCS5B01G535800 chr5B 91.603 131 11 0 3049 3179 612672854 612672984 7.770000e-42 182.0
7 TraesCS5B01G535800 chr5B 86.585 164 12 5 3265 3418 691807394 691807231 4.670000e-39 172.0
8 TraesCS5B01G535800 chr5B 92.683 82 5 1 2828 2909 691941315 691941235 2.220000e-22 117.0
9 TraesCS5B01G535800 chr5D 86.621 1734 140 39 1072 2751 547841390 547839695 0.000000e+00 1832.0
10 TraesCS5B01G535800 chr5D 81.861 2117 209 75 745 2751 547884622 547882571 0.000000e+00 1620.0
11 TraesCS5B01G535800 chr5D 83.784 1554 186 35 1237 2751 547892887 547891361 0.000000e+00 1413.0
12 TraesCS5B01G535800 chr5D 83.969 1179 140 36 1596 2751 547925952 547924800 0.000000e+00 1085.0
13 TraesCS5B01G535800 chr5D 84.507 568 53 17 1057 1609 547926517 547925970 2.410000e-146 529.0
14 TraesCS5B01G535800 chr5D 88.920 352 29 6 3177 3520 547891119 547890770 3.250000e-115 425.0
15 TraesCS5B01G535800 chr5D 89.091 330 27 5 3199 3520 547881587 547881259 5.480000e-108 401.0
16 TraesCS5B01G535800 chr5D 91.667 228 14 2 2803 3030 547891338 547891116 9.490000e-81 311.0
17 TraesCS5B01G535800 chr5D 84.262 305 31 15 771 1069 547841743 547841450 7.440000e-72 281.0
18 TraesCS5B01G535800 chr5D 91.124 169 14 1 2862 3030 547881761 547881594 9.840000e-56 228.0
19 TraesCS5B01G535800 chr5D 91.045 134 12 0 3049 3182 59947713 59947846 7.770000e-42 182.0
20 TraesCS5B01G535800 chr5D 100.000 48 0 0 2800 2847 547882473 547882426 4.840000e-14 89.8
21 TraesCS5B01G535800 chr5D 90.741 54 4 1 963 1016 547893156 547893104 1.750000e-08 71.3
22 TraesCS5B01G535800 chr5D 100.000 33 0 0 684 716 311378467 311378435 1.060000e-05 62.1
23 TraesCS5B01G535800 chr5D 96.875 32 1 0 1193 1224 547892913 547892882 2.000000e-03 54.7
24 TraesCS5B01G535800 chr4A 83.358 2061 198 75 742 2751 618413420 618411454 0.000000e+00 1772.0
25 TraesCS5B01G535800 chr4A 83.448 1740 218 45 1057 2751 618530010 618528296 0.000000e+00 1554.0
26 TraesCS5B01G535800 chr4A 82.826 1741 177 65 1103 2751 618419210 618417500 0.000000e+00 1447.0
27 TraesCS5B01G535800 chr4A 83.616 1532 190 42 1254 2751 618464557 618463053 0.000000e+00 1382.0
28 TraesCS5B01G535800 chr4A 88.788 330 28 5 3199 3520 618416294 618415966 2.550000e-106 396.0
29 TraesCS5B01G535800 chr4A 89.583 144 15 0 3050 3193 139870637 139870780 2.160000e-42 183.0
30 TraesCS5B01G535800 chr4A 90.977 133 12 0 3049 3181 614112347 614112479 2.790000e-41 180.0
31 TraesCS5B01G535800 chr4A 83.957 187 25 5 2826 3008 618416564 618416379 1.300000e-39 174.0
32 TraesCS5B01G535800 chr4A 83.562 73 4 4 991 1063 618419350 618419286 1.060000e-05 62.1
33 TraesCS5B01G535800 chr3B 90.451 576 45 10 1 570 819822841 819822270 0.000000e+00 750.0
34 TraesCS5B01G535800 chr3B 84.733 262 25 10 237 495 8480450 8480201 7.550000e-62 248.0
35 TraesCS5B01G535800 chr3B 91.729 133 11 0 3049 3181 745549178 745549046 6.000000e-43 185.0
36 TraesCS5B01G535800 chr3B 76.087 138 23 9 290 426 330596473 330596601 2.940000e-06 63.9
37 TraesCS5B01G535800 chr3B 100.000 33 0 0 684 716 803332079 803332047 1.060000e-05 62.1
38 TraesCS5B01G535800 chr3B 100.000 33 0 0 684 716 803361968 803361936 1.060000e-05 62.1
39 TraesCS5B01G535800 chr7D 81.736 553 57 27 16 564 15213050 15213562 4.200000e-114 422.0
40 TraesCS5B01G535800 chr7D 78.014 564 67 21 16 574 55876758 55876247 5.710000e-78 302.0
41 TraesCS5B01G535800 chr3A 81.216 559 70 15 16 571 623873525 623874051 5.440000e-113 418.0
42 TraesCS5B01G535800 chr3A 78.393 560 72 24 17 571 594291037 594290522 5.670000e-83 318.0
43 TraesCS5B01G535800 chr2D 81.047 554 64 21 16 564 105494103 105494620 1.520000e-108 403.0
44 TraesCS5B01G535800 chr2D 90.370 135 13 0 3049 3183 336511264 336511130 1.000000e-40 178.0
45 TraesCS5B01G535800 chr2D 85.294 68 7 2 139 204 479054859 479054925 2.270000e-07 67.6
46 TraesCS5B01G535800 chr7B 80.460 348 49 13 236 576 578710670 578710335 7.550000e-62 248.0
47 TraesCS5B01G535800 chr2B 79.765 341 40 13 226 564 729495498 729495185 1.650000e-53 220.0
48 TraesCS5B01G535800 chr2B 87.143 70 5 4 137 204 701510206 701510139 3.770000e-10 76.8
49 TraesCS5B01G535800 chr2B 100.000 35 0 0 684 718 13205944 13205978 8.160000e-07 65.8
50 TraesCS5B01G535800 chr1A 91.729 133 11 0 3049 3181 181769458 181769590 6.000000e-43 185.0
51 TraesCS5B01G535800 chr1A 91.603 131 9 2 3049 3179 484330984 484331112 2.790000e-41 180.0
52 TraesCS5B01G535800 chrUn 91.603 131 11 0 3049 3179 96464842 96464972 7.770000e-42 182.0
53 TraesCS5B01G535800 chrUn 100.000 33 0 0 684 716 303791053 303791085 1.060000e-05 62.1
54 TraesCS5B01G535800 chrUn 100.000 33 0 0 684 716 308987358 308987390 1.060000e-05 62.1
55 TraesCS5B01G535800 chr1D 100.000 34 0 0 171 204 492981542 492981509 2.940000e-06 63.9
56 TraesCS5B01G535800 chr1D 100.000 31 0 0 686 716 451394975 451394945 1.370000e-04 58.4
57 TraesCS5B01G535800 chr4B 100.000 33 0 0 684 716 506609890 506609922 1.060000e-05 62.1
58 TraesCS5B01G535800 chr3D 100.000 33 0 0 684 716 374269288 374269320 1.060000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G535800 chr5B 691796228 691799749 3521 True 6505.00 6505 100.000000 1 3522 1 chr5B.!!$R1 3521
1 TraesCS5B01G535800 chr5B 691823837 691825498 1661 True 1380.00 1380 82.333000 1083 2751 1 chr5B.!!$R3 1668
2 TraesCS5B01G535800 chr5B 691772248 691774323 2075 True 762.50 1290 81.157500 745 2752 2 chr5B.!!$R4 2007
3 TraesCS5B01G535800 chr5B 691941235 691943205 1970 True 578.00 1059 87.167667 1057 2909 3 chr5B.!!$R5 1852
4 TraesCS5B01G535800 chr5D 547839695 547841743 2048 True 1056.50 1832 85.441500 771 2751 2 chr5D.!!$R2 1980
5 TraesCS5B01G535800 chr5D 547924800 547926517 1717 True 807.00 1085 84.238000 1057 2751 2 chr5D.!!$R5 1694
6 TraesCS5B01G535800 chr5D 547881259 547884622 3363 True 584.70 1620 90.519000 745 3520 4 chr5D.!!$R3 2775
7 TraesCS5B01G535800 chr5D 547890770 547893156 2386 True 455.00 1413 90.397400 963 3520 5 chr5D.!!$R4 2557
8 TraesCS5B01G535800 chr4A 618528296 618530010 1714 True 1554.00 1554 83.448000 1057 2751 1 chr4A.!!$R2 1694
9 TraesCS5B01G535800 chr4A 618463053 618464557 1504 True 1382.00 1382 83.616000 1254 2751 1 chr4A.!!$R1 1497
10 TraesCS5B01G535800 chr4A 618411454 618419350 7896 True 770.22 1772 84.498200 742 3520 5 chr4A.!!$R3 2778
11 TraesCS5B01G535800 chr3B 819822270 819822841 571 True 750.00 750 90.451000 1 570 1 chr3B.!!$R5 569
12 TraesCS5B01G535800 chr7D 15213050 15213562 512 False 422.00 422 81.736000 16 564 1 chr7D.!!$F1 548
13 TraesCS5B01G535800 chr7D 55876247 55876758 511 True 302.00 302 78.014000 16 574 1 chr7D.!!$R1 558
14 TraesCS5B01G535800 chr3A 623873525 623874051 526 False 418.00 418 81.216000 16 571 1 chr3A.!!$F1 555
15 TraesCS5B01G535800 chr3A 594290522 594291037 515 True 318.00 318 78.393000 17 571 1 chr3A.!!$R1 554
16 TraesCS5B01G535800 chr2D 105494103 105494620 517 False 403.00 403 81.047000 16 564 1 chr2D.!!$F1 548

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
702 726 0.165079 CGTGTGGGCGATGTACAAAC 59.835 55.0 0.0 0.0 0.0 2.93 F
1032 1081 0.105709 TCACCTCACCTGACCTCACA 60.106 55.0 0.0 0.0 0.0 3.58 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1904 2202 0.036388 TGGAAGCGAGGTTGATCCAC 60.036 55.0 0.0 0.0 35.33 4.02 R
2573 2919 0.041090 TTCCCTCCCAATCCTTTGCC 59.959 55.0 0.0 0.0 0.00 4.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
54 56 9.227490 CGAACAAAATTTTAAACCCCAATTTTC 57.773 29.630 2.44 0.00 37.79 2.29
348 371 8.980481 AGGAGAGAAAAGATAAAACAAACAGA 57.020 30.769 0.00 0.00 0.00 3.41
349 372 9.408648 AGGAGAGAAAAGATAAAACAAACAGAA 57.591 29.630 0.00 0.00 0.00 3.02
500 524 2.947938 CTAATGGGCCGGCCTGTCTG 62.948 65.000 42.70 26.05 36.10 3.51
521 545 3.374506 TCGATCGCGAGGAAGACTA 57.625 52.632 16.66 0.00 42.51 2.59
530 554 1.789464 CGAGGAAGACTATGCGATTGC 59.211 52.381 0.00 0.00 43.20 3.56
542 566 0.801836 GCGATTGCCCGACATTTTGG 60.802 55.000 0.00 0.00 33.98 3.28
570 594 2.798847 GTGCGTCGTATAGGAAATTCCC 59.201 50.000 8.66 0.00 37.19 3.97
571 595 2.056577 GCGTCGTATAGGAAATTCCCG 58.943 52.381 8.66 5.25 37.19 5.14
572 596 2.544486 GCGTCGTATAGGAAATTCCCGT 60.544 50.000 8.66 0.03 37.19 5.28
573 597 3.709987 CGTCGTATAGGAAATTCCCGTT 58.290 45.455 8.66 0.00 37.19 4.44
574 598 3.488310 CGTCGTATAGGAAATTCCCGTTG 59.512 47.826 8.66 0.00 37.19 4.10
575 599 3.246936 GTCGTATAGGAAATTCCCGTTGC 59.753 47.826 8.66 0.00 37.19 4.17
576 600 2.220133 CGTATAGGAAATTCCCGTTGCG 59.780 50.000 8.66 5.58 37.19 4.85
577 601 2.413310 ATAGGAAATTCCCGTTGCGT 57.587 45.000 8.66 0.00 37.19 5.24
578 602 3.547054 ATAGGAAATTCCCGTTGCGTA 57.453 42.857 8.66 0.00 37.19 4.42
579 603 1.445871 AGGAAATTCCCGTTGCGTAC 58.554 50.000 8.66 0.00 37.19 3.67
580 604 1.158434 GGAAATTCCCGTTGCGTACA 58.842 50.000 0.00 0.00 0.00 2.90
581 605 1.135888 GGAAATTCCCGTTGCGTACAC 60.136 52.381 0.00 0.00 0.00 2.90
582 606 1.532007 GAAATTCCCGTTGCGTACACA 59.468 47.619 0.00 0.00 0.00 3.72
583 607 1.816074 AATTCCCGTTGCGTACACAT 58.184 45.000 0.00 0.00 0.00 3.21
584 608 2.676632 ATTCCCGTTGCGTACACATA 57.323 45.000 0.00 0.00 0.00 2.29
585 609 1.712401 TTCCCGTTGCGTACACATAC 58.288 50.000 0.00 0.00 0.00 2.39
617 641 5.547181 AAAAGTAGCGATTAACTGAAGCC 57.453 39.130 0.00 0.00 0.00 4.35
618 642 3.887621 AGTAGCGATTAACTGAAGCCA 57.112 42.857 0.00 0.00 0.00 4.75
619 643 4.408182 AGTAGCGATTAACTGAAGCCAT 57.592 40.909 0.00 0.00 0.00 4.40
620 644 4.372656 AGTAGCGATTAACTGAAGCCATC 58.627 43.478 0.00 0.00 0.00 3.51
621 645 2.205074 AGCGATTAACTGAAGCCATCG 58.795 47.619 0.00 0.00 39.78 3.84
622 646 2.159099 AGCGATTAACTGAAGCCATCGA 60.159 45.455 4.12 0.00 39.26 3.59
623 647 2.219674 GCGATTAACTGAAGCCATCGAG 59.780 50.000 4.12 0.00 39.26 4.04
624 648 2.797156 CGATTAACTGAAGCCATCGAGG 59.203 50.000 0.00 0.00 39.26 4.63
625 649 2.691409 TTAACTGAAGCCATCGAGGG 57.309 50.000 12.83 12.83 38.09 4.30
626 650 1.860641 TAACTGAAGCCATCGAGGGA 58.139 50.000 22.53 0.00 38.09 4.20
627 651 0.250513 AACTGAAGCCATCGAGGGAC 59.749 55.000 22.53 11.43 38.09 4.46
628 652 1.227089 CTGAAGCCATCGAGGGACG 60.227 63.158 22.53 0.00 44.09 4.79
629 653 2.107141 GAAGCCATCGAGGGACGG 59.893 66.667 22.53 1.52 42.82 4.79
640 664 4.557605 GGGACGGCGCGATCGTTA 62.558 66.667 24.05 0.00 41.22 3.18
641 665 3.022914 GGACGGCGCGATCGTTAG 61.023 66.667 24.05 9.79 41.22 2.34
642 666 3.022914 GACGGCGCGATCGTTAGG 61.023 66.667 24.05 6.88 41.22 2.69
643 667 4.564116 ACGGCGCGATCGTTAGGG 62.564 66.667 17.81 5.45 37.61 3.53
645 669 4.963428 GGCGCGATCGTTAGGGGG 62.963 72.222 17.81 0.00 38.14 5.40
673 697 4.489771 CCGCTCGCCCCCTTGAAT 62.490 66.667 0.00 0.00 0.00 2.57
674 698 2.897350 CGCTCGCCCCCTTGAATC 60.897 66.667 0.00 0.00 0.00 2.52
675 699 2.517166 GCTCGCCCCCTTGAATCC 60.517 66.667 0.00 0.00 0.00 3.01
676 700 2.203070 CTCGCCCCCTTGAATCCG 60.203 66.667 0.00 0.00 0.00 4.18
677 701 3.006728 TCGCCCCCTTGAATCCGT 61.007 61.111 0.00 0.00 0.00 4.69
678 702 2.824041 CGCCCCCTTGAATCCGTG 60.824 66.667 0.00 0.00 0.00 4.94
679 703 3.140814 GCCCCCTTGAATCCGTGC 61.141 66.667 0.00 0.00 0.00 5.34
680 704 2.440247 CCCCCTTGAATCCGTGCC 60.440 66.667 0.00 0.00 0.00 5.01
681 705 2.677228 CCCCTTGAATCCGTGCCT 59.323 61.111 0.00 0.00 0.00 4.75
682 706 1.632018 CCCCCTTGAATCCGTGCCTA 61.632 60.000 0.00 0.00 0.00 3.93
683 707 0.463833 CCCCTTGAATCCGTGCCTAC 60.464 60.000 0.00 0.00 0.00 3.18
696 720 2.577059 CCTACGTGTGGGCGATGT 59.423 61.111 0.00 0.00 35.59 3.06
697 721 1.811195 CCTACGTGTGGGCGATGTA 59.189 57.895 0.00 0.00 35.59 2.29
698 722 0.526954 CCTACGTGTGGGCGATGTAC 60.527 60.000 0.00 0.00 35.59 2.90
699 723 0.171679 CTACGTGTGGGCGATGTACA 59.828 55.000 0.00 0.00 35.59 2.90
700 724 0.602060 TACGTGTGGGCGATGTACAA 59.398 50.000 0.00 0.00 35.59 2.41
701 725 0.249953 ACGTGTGGGCGATGTACAAA 60.250 50.000 0.00 0.00 35.59 2.83
702 726 0.165079 CGTGTGGGCGATGTACAAAC 59.835 55.000 0.00 0.00 0.00 2.93
703 727 0.165079 GTGTGGGCGATGTACAAACG 59.835 55.000 17.39 17.39 0.00 3.60
707 731 3.568686 GCGATGTACAAACGCCCA 58.431 55.556 28.09 0.00 45.35 5.36
708 732 1.133869 GCGATGTACAAACGCCCAC 59.866 57.895 28.09 10.68 45.35 4.61
709 733 1.570347 GCGATGTACAAACGCCCACA 61.570 55.000 28.09 0.00 45.35 4.17
710 734 0.165079 CGATGTACAAACGCCCACAC 59.835 55.000 0.00 0.00 0.00 3.82
711 735 0.165079 GATGTACAAACGCCCACACG 59.835 55.000 0.00 0.00 39.50 4.49
725 749 3.337889 CACGTGTGAGTGTGGGCG 61.338 66.667 7.58 0.00 37.35 6.13
726 750 3.845259 ACGTGTGAGTGTGGGCGT 61.845 61.111 0.00 0.00 0.00 5.68
727 751 2.587753 CGTGTGAGTGTGGGCGTT 60.588 61.111 0.00 0.00 0.00 4.84
728 752 1.300311 CGTGTGAGTGTGGGCGTTA 60.300 57.895 0.00 0.00 0.00 3.18
729 753 1.282248 CGTGTGAGTGTGGGCGTTAG 61.282 60.000 0.00 0.00 0.00 2.34
730 754 0.249741 GTGTGAGTGTGGGCGTTAGT 60.250 55.000 0.00 0.00 0.00 2.24
731 755 0.466543 TGTGAGTGTGGGCGTTAGTT 59.533 50.000 0.00 0.00 0.00 2.24
732 756 1.134340 TGTGAGTGTGGGCGTTAGTTT 60.134 47.619 0.00 0.00 0.00 2.66
733 757 1.944709 GTGAGTGTGGGCGTTAGTTTT 59.055 47.619 0.00 0.00 0.00 2.43
734 758 2.356695 GTGAGTGTGGGCGTTAGTTTTT 59.643 45.455 0.00 0.00 0.00 1.94
874 902 4.035102 GTCCACCCACCTGCTCCC 62.035 72.222 0.00 0.00 0.00 4.30
909 937 1.273327 CGCAGCCCCTTTGAAAAAGAT 59.727 47.619 1.31 0.00 0.00 2.40
971 1017 0.174845 TCAACGACCATCATCCCGAC 59.825 55.000 0.00 0.00 0.00 4.79
1032 1081 0.105709 TCACCTCACCTGACCTCACA 60.106 55.000 0.00 0.00 0.00 3.58
1090 1243 3.414700 GCAGCCGTCGTGTTCCTG 61.415 66.667 0.00 0.00 0.00 3.86
1098 1251 0.874607 GTCGTGTTCCTGTTGCGTCT 60.875 55.000 0.00 0.00 0.00 4.18
1186 1345 3.341823 CTCCTCCTGATTCTTGTTGTGG 58.658 50.000 0.00 0.00 0.00 4.17
1296 1458 0.398318 AGGTGGTGAAGAAGGTGCTC 59.602 55.000 0.00 0.00 0.00 4.26
1382 1566 1.667830 CCTCTCTCAACCGCGCAAA 60.668 57.895 8.75 0.00 0.00 3.68
1384 1568 0.586319 CTCTCTCAACCGCGCAAAAA 59.414 50.000 8.75 0.00 0.00 1.94
1390 1574 1.008361 CAACCGCGCAAAAAGGGATG 61.008 55.000 8.75 0.00 0.00 3.51
1437 1624 1.335496 GCTGGCGTTGACCTTTGTTTA 59.665 47.619 0.00 0.00 0.00 2.01
1472 1660 1.983196 GCTGCTGCAGTCATGAGCTG 61.983 60.000 28.50 16.40 39.41 4.24
1477 1665 4.105727 CAGTCATGAGCTGCGGAG 57.894 61.111 0.00 0.00 0.00 4.63
1659 1923 5.104982 TGAAATGCTTTCTTGTCTTTTGGGT 60.105 36.000 9.17 0.00 40.32 4.51
1741 2008 0.610174 GACAGGAGATGTGCAGGTGA 59.390 55.000 0.00 0.00 44.17 4.02
1759 2035 3.888930 GGTGAGACCCAATTTGTTCAGAA 59.111 43.478 0.00 0.00 30.04 3.02
1782 2078 5.982890 AAAACCACTTGACCCATTCTATG 57.017 39.130 0.00 0.00 0.00 2.23
1788 2084 4.396166 CACTTGACCCATTCTATGTTGACC 59.604 45.833 0.00 0.00 0.00 4.02
1801 2097 6.688578 TCTATGTTGACCTGAGAACTAACAC 58.311 40.000 0.00 0.00 31.75 3.32
1904 2202 2.750637 CAGAAGGGCCTGCAGCTG 60.751 66.667 15.67 10.11 43.05 4.24
1919 2217 1.078848 GCTGTGGATCAACCTCGCT 60.079 57.895 0.00 0.00 39.86 4.93
2032 2378 5.634020 ACTCGACACTAATTGCTCTAACAAC 59.366 40.000 0.00 0.00 31.03 3.32
2158 2504 2.669229 TCGCCGGTCTACACACGA 60.669 61.111 1.90 0.00 0.00 4.35
2203 2549 2.356278 ATGCAACCAGGGTCGCAT 59.644 55.556 10.99 10.99 42.48 4.73
2233 2579 0.554792 CAATCCCTGAGGGCTGGAAT 59.445 55.000 14.20 0.00 43.94 3.01
2281 2627 1.474330 GTGTATTTGGCAAGGAGGGG 58.526 55.000 0.00 0.00 0.00 4.79
2380 2726 3.349006 CTGCGCTTCGTGTTGGCT 61.349 61.111 9.73 0.00 0.00 4.75
2474 2820 2.861147 GGCCATGGAGGACTATTACC 57.139 55.000 18.40 0.00 44.70 2.85
2553 2899 4.505556 AGTTTGTCGATGTGATGATGATCG 59.494 41.667 0.00 0.00 40.26 3.69
2561 2907 0.317854 TGATGATGATCGACGTCGCC 60.318 55.000 32.19 24.53 39.60 5.54
2579 2925 1.442520 CGTGCATTGTCGGGCAAAG 60.443 57.895 0.00 0.00 42.45 2.77
2594 9001 2.470990 GCAAAGGATTGGGAGGGAAAT 58.529 47.619 0.00 0.00 37.02 2.17
2595 9002 2.840038 GCAAAGGATTGGGAGGGAAATT 59.160 45.455 0.00 0.00 37.02 1.82
2614 9024 7.201635 GGGAAATTGAAATTGCATTGTACCATC 60.202 37.037 0.00 0.00 0.00 3.51
2643 9058 1.532868 GCCTTTGTGTAGAGTGCAGTG 59.467 52.381 0.00 0.00 0.00 3.66
2650 9065 1.468914 TGTAGAGTGCAGTGCTAGTCG 59.531 52.381 17.60 0.00 0.00 4.18
2654 9069 1.199327 GAGTGCAGTGCTAGTCGTGTA 59.801 52.381 17.60 0.00 0.00 2.90
2656 9071 3.014623 AGTGCAGTGCTAGTCGTGTATA 58.985 45.455 17.60 0.00 0.00 1.47
2661 9076 4.912766 GCAGTGCTAGTCGTGTATATCTTC 59.087 45.833 8.18 0.00 0.00 2.87
2667 9083 6.856426 TGCTAGTCGTGTATATCTTCGATTTG 59.144 38.462 0.00 0.00 34.93 2.32
2724 9153 9.959721 ATACAATAAAAGTGTGTAATGAGGAGT 57.040 29.630 0.00 0.00 31.85 3.85
2761 9213 9.955208 TCATTGTTTCATCATAGATTTGCATAC 57.045 29.630 0.00 0.00 0.00 2.39
2787 9239 6.491403 GCAGATCAAGGATAAATAATGGGTGT 59.509 38.462 0.00 0.00 0.00 4.16
2934 10082 1.522355 ATGACGATGAAGCAGGCCG 60.522 57.895 0.00 0.00 0.00 6.13
2968 10116 1.078918 TCAACATGAGGCTGCCGAG 60.079 57.895 13.96 7.08 0.00 4.63
2983 10131 0.891373 CCGAGCTCTGAAGTCTGGAA 59.109 55.000 12.85 0.00 0.00 3.53
2990 10138 4.018597 AGCTCTGAAGTCTGGAATGGAAAT 60.019 41.667 0.00 0.00 0.00 2.17
3030 10178 6.541934 AACTATGACTCCTAACCTTGTACC 57.458 41.667 0.00 0.00 0.00 3.34
3031 10179 5.840081 ACTATGACTCCTAACCTTGTACCT 58.160 41.667 0.00 0.00 0.00 3.08
3032 10180 5.892686 ACTATGACTCCTAACCTTGTACCTC 59.107 44.000 0.00 0.00 0.00 3.85
3033 10181 3.438183 TGACTCCTAACCTTGTACCTCC 58.562 50.000 0.00 0.00 0.00 4.30
3035 10183 3.700539 GACTCCTAACCTTGTACCTCCTC 59.299 52.174 0.00 0.00 0.00 3.71
3036 10184 3.032459 CTCCTAACCTTGTACCTCCTCC 58.968 54.545 0.00 0.00 0.00 4.30
3037 10185 1.755380 CCTAACCTTGTACCTCCTCCG 59.245 57.143 0.00 0.00 0.00 4.63
3039 10187 1.725803 AACCTTGTACCTCCTCCGTT 58.274 50.000 0.00 0.00 0.00 4.44
3040 10188 1.264295 ACCTTGTACCTCCTCCGTTC 58.736 55.000 0.00 0.00 0.00 3.95
3041 10189 0.535797 CCTTGTACCTCCTCCGTTCC 59.464 60.000 0.00 0.00 0.00 3.62
3042 10190 1.558233 CTTGTACCTCCTCCGTTCCT 58.442 55.000 0.00 0.00 0.00 3.36
3043 10191 2.622452 CCTTGTACCTCCTCCGTTCCTA 60.622 54.545 0.00 0.00 0.00 2.94
3044 10192 2.905415 TGTACCTCCTCCGTTCCTAA 57.095 50.000 0.00 0.00 0.00 2.69
3045 10193 3.173953 TGTACCTCCTCCGTTCCTAAA 57.826 47.619 0.00 0.00 0.00 1.85
3046 10194 3.716431 TGTACCTCCTCCGTTCCTAAAT 58.284 45.455 0.00 0.00 0.00 1.40
3047 10195 4.870636 TGTACCTCCTCCGTTCCTAAATA 58.129 43.478 0.00 0.00 0.00 1.40
3048 10196 5.461327 TGTACCTCCTCCGTTCCTAAATAT 58.539 41.667 0.00 0.00 0.00 1.28
3049 10197 6.613699 TGTACCTCCTCCGTTCCTAAATATA 58.386 40.000 0.00 0.00 0.00 0.86
3050 10198 6.718454 TGTACCTCCTCCGTTCCTAAATATAG 59.282 42.308 0.00 0.00 0.00 1.31
3051 10199 5.713807 ACCTCCTCCGTTCCTAAATATAGT 58.286 41.667 0.00 0.00 0.00 2.12
3052 10200 5.539193 ACCTCCTCCGTTCCTAAATATAGTG 59.461 44.000 0.00 0.00 0.00 2.74
3053 10201 5.773680 CCTCCTCCGTTCCTAAATATAGTGA 59.226 44.000 0.00 0.00 0.00 3.41
3054 10202 6.437793 CCTCCTCCGTTCCTAAATATAGTGAT 59.562 42.308 0.00 0.00 0.00 3.06
3055 10203 7.038941 CCTCCTCCGTTCCTAAATATAGTGATT 60.039 40.741 0.00 0.00 0.00 2.57
3056 10204 7.893658 TCCTCCGTTCCTAAATATAGTGATTC 58.106 38.462 0.00 0.00 0.00 2.52
3057 10205 7.039223 TCCTCCGTTCCTAAATATAGTGATTCC 60.039 40.741 0.00 0.00 0.00 3.01
3058 10206 7.256190 CCTCCGTTCCTAAATATAGTGATTCCA 60.256 40.741 0.00 0.00 0.00 3.53
3059 10207 7.667557 TCCGTTCCTAAATATAGTGATTCCAG 58.332 38.462 0.00 0.00 0.00 3.86
3060 10208 7.289317 TCCGTTCCTAAATATAGTGATTCCAGT 59.711 37.037 0.00 0.00 0.00 4.00
3061 10209 8.582437 CCGTTCCTAAATATAGTGATTCCAGTA 58.418 37.037 0.00 0.00 33.14 2.74
3084 10232 6.932356 ATGGACTACATACAGAGCAAAATG 57.068 37.500 0.00 0.00 38.26 2.32
3085 10233 6.048732 TGGACTACATACAGAGCAAAATGA 57.951 37.500 0.00 0.00 0.00 2.57
3086 10234 6.108687 TGGACTACATACAGAGCAAAATGAG 58.891 40.000 0.00 0.00 0.00 2.90
3087 10235 6.109359 GGACTACATACAGAGCAAAATGAGT 58.891 40.000 0.00 0.00 0.00 3.41
3088 10236 6.036517 GGACTACATACAGAGCAAAATGAGTG 59.963 42.308 0.00 0.00 0.00 3.51
3089 10237 5.877012 ACTACATACAGAGCAAAATGAGTGG 59.123 40.000 0.00 0.00 0.00 4.00
3090 10238 4.910195 ACATACAGAGCAAAATGAGTGGA 58.090 39.130 0.00 0.00 0.00 4.02
3091 10239 5.503927 ACATACAGAGCAAAATGAGTGGAT 58.496 37.500 0.00 0.00 0.00 3.41
3092 10240 5.587844 ACATACAGAGCAAAATGAGTGGATC 59.412 40.000 0.00 0.00 0.00 3.36
3093 10241 3.350833 ACAGAGCAAAATGAGTGGATCC 58.649 45.455 4.20 4.20 0.00 3.36
3094 10242 3.245016 ACAGAGCAAAATGAGTGGATCCA 60.245 43.478 11.44 11.44 0.00 3.41
3095 10243 3.128242 CAGAGCAAAATGAGTGGATCCAC 59.872 47.826 33.72 33.72 46.50 4.02
3108 10256 3.927142 GTGGATCCACACTCTAAAGAACG 59.073 47.826 35.21 0.00 45.53 3.95
3109 10257 3.576982 TGGATCCACACTCTAAAGAACGT 59.423 43.478 11.44 0.00 0.00 3.99
3110 10258 4.174762 GGATCCACACTCTAAAGAACGTC 58.825 47.826 6.95 0.00 0.00 4.34
3111 10259 4.082136 GGATCCACACTCTAAAGAACGTCT 60.082 45.833 6.95 0.00 0.00 4.18
3112 10260 5.125097 GGATCCACACTCTAAAGAACGTCTA 59.875 44.000 6.95 0.00 0.00 2.59
3113 10261 6.183360 GGATCCACACTCTAAAGAACGTCTAT 60.183 42.308 6.95 0.00 0.00 1.98
3114 10262 7.013083 GGATCCACACTCTAAAGAACGTCTATA 59.987 40.741 6.95 0.00 0.00 1.31
3115 10263 7.876936 TCCACACTCTAAAGAACGTCTATAT 57.123 36.000 0.00 0.00 0.00 0.86
3116 10264 8.969260 TCCACACTCTAAAGAACGTCTATATA 57.031 34.615 0.00 0.00 0.00 0.86
3117 10265 8.834465 TCCACACTCTAAAGAACGTCTATATAC 58.166 37.037 0.00 0.00 0.00 1.47
3118 10266 8.618677 CCACACTCTAAAGAACGTCTATATACA 58.381 37.037 0.00 0.00 0.00 2.29
3121 10269 9.828852 CACTCTAAAGAACGTCTATATACATCC 57.171 37.037 0.00 0.00 0.00 3.51
3122 10270 8.719648 ACTCTAAAGAACGTCTATATACATCCG 58.280 37.037 0.00 0.00 0.00 4.18
3123 10271 8.613060 TCTAAAGAACGTCTATATACATCCGT 57.387 34.615 0.00 0.00 0.00 4.69
3124 10272 9.710900 TCTAAAGAACGTCTATATACATCCGTA 57.289 33.333 0.00 0.00 0.00 4.02
3136 10284 7.997773 ATATACATCCGTATATAGTCCGCAT 57.002 36.000 3.81 0.00 45.46 4.73
3137 10285 6.710597 ATACATCCGTATATAGTCCGCATT 57.289 37.500 0.00 0.00 36.53 3.56
3138 10286 4.744570 ACATCCGTATATAGTCCGCATTG 58.255 43.478 0.00 0.00 0.00 2.82
3139 10287 4.461431 ACATCCGTATATAGTCCGCATTGA 59.539 41.667 0.00 0.00 0.00 2.57
3140 10288 5.047590 ACATCCGTATATAGTCCGCATTGAA 60.048 40.000 0.00 0.00 0.00 2.69
3141 10289 5.456548 TCCGTATATAGTCCGCATTGAAA 57.543 39.130 0.00 0.00 0.00 2.69
3142 10290 6.032956 TCCGTATATAGTCCGCATTGAAAT 57.967 37.500 0.00 0.00 0.00 2.17
3143 10291 6.097356 TCCGTATATAGTCCGCATTGAAATC 58.903 40.000 0.00 0.00 0.00 2.17
3144 10292 6.071560 TCCGTATATAGTCCGCATTGAAATCT 60.072 38.462 0.00 0.00 0.00 2.40
3145 10293 6.253727 CCGTATATAGTCCGCATTGAAATCTC 59.746 42.308 0.00 0.00 0.00 2.75
3146 10294 7.030165 CGTATATAGTCCGCATTGAAATCTCT 58.970 38.462 0.00 0.00 0.00 3.10
3147 10295 8.182227 CGTATATAGTCCGCATTGAAATCTCTA 58.818 37.037 0.00 0.00 0.00 2.43
3148 10296 9.856488 GTATATAGTCCGCATTGAAATCTCTAA 57.144 33.333 0.00 0.00 0.00 2.10
3150 10298 9.778741 ATATAGTCCGCATTGAAATCTCTAAAA 57.221 29.630 0.00 0.00 0.00 1.52
3151 10299 6.817765 AGTCCGCATTGAAATCTCTAAAAA 57.182 33.333 0.00 0.00 0.00 1.94
3152 10300 6.846350 AGTCCGCATTGAAATCTCTAAAAAG 58.154 36.000 0.00 0.00 0.00 2.27
3153 10301 6.655003 AGTCCGCATTGAAATCTCTAAAAAGA 59.345 34.615 0.00 0.00 0.00 2.52
3154 10302 6.743172 GTCCGCATTGAAATCTCTAAAAAGAC 59.257 38.462 0.00 0.00 0.00 3.01
3155 10303 6.655003 TCCGCATTGAAATCTCTAAAAAGACT 59.345 34.615 0.00 0.00 0.00 3.24
3156 10304 7.174946 TCCGCATTGAAATCTCTAAAAAGACTT 59.825 33.333 0.00 0.00 0.00 3.01
3157 10305 8.450964 CCGCATTGAAATCTCTAAAAAGACTTA 58.549 33.333 0.00 0.00 0.00 2.24
3158 10306 9.994432 CGCATTGAAATCTCTAAAAAGACTTAT 57.006 29.630 0.00 0.00 0.00 1.73
3174 10322 9.828039 AAAAGACTTATATTTAGTAACGGAGGG 57.172 33.333 0.00 0.00 0.00 4.30
3175 10323 8.773033 AAGACTTATATTTAGTAACGGAGGGA 57.227 34.615 0.00 0.00 0.00 4.20
3176 10324 8.406730 AGACTTATATTTAGTAACGGAGGGAG 57.593 38.462 0.00 0.00 0.00 4.30
3177 10325 8.003629 AGACTTATATTTAGTAACGGAGGGAGT 58.996 37.037 0.00 0.00 0.00 3.85
3178 10326 9.289782 GACTTATATTTAGTAACGGAGGGAGTA 57.710 37.037 0.00 0.00 0.00 2.59
3179 10327 9.072375 ACTTATATTTAGTAACGGAGGGAGTAC 57.928 37.037 0.00 0.00 0.00 2.73
3180 10328 8.995027 TTATATTTAGTAACGGAGGGAGTACA 57.005 34.615 0.00 0.00 0.00 2.90
3181 10329 7.902920 ATATTTAGTAACGGAGGGAGTACAA 57.097 36.000 0.00 0.00 0.00 2.41
3182 10330 6.803366 ATTTAGTAACGGAGGGAGTACAAT 57.197 37.500 0.00 0.00 0.00 2.71
3183 10331 5.587388 TTAGTAACGGAGGGAGTACAATG 57.413 43.478 0.00 0.00 0.00 2.82
3184 10332 2.167900 AGTAACGGAGGGAGTACAATGC 59.832 50.000 0.00 0.00 0.00 3.56
3185 10333 0.981183 AACGGAGGGAGTACAATGCA 59.019 50.000 0.00 0.00 0.00 3.96
3186 10334 0.537188 ACGGAGGGAGTACAATGCAG 59.463 55.000 0.00 0.00 0.00 4.41
3187 10335 0.824109 CGGAGGGAGTACAATGCAGA 59.176 55.000 0.00 0.00 0.00 4.26
3188 10336 1.414181 CGGAGGGAGTACAATGCAGAT 59.586 52.381 0.00 0.00 0.00 2.90
3189 10337 2.804572 CGGAGGGAGTACAATGCAGATG 60.805 54.545 0.00 0.00 0.00 2.90
3190 10338 2.171448 GGAGGGAGTACAATGCAGATGT 59.829 50.000 12.05 12.05 34.81 3.06
3191 10339 3.370953 GGAGGGAGTACAATGCAGATGTT 60.371 47.826 12.56 0.00 32.27 2.71
3192 10340 3.614092 AGGGAGTACAATGCAGATGTTG 58.386 45.455 12.56 4.83 32.27 3.33
3195 10343 2.684881 GAGTACAATGCAGATGTTGGGG 59.315 50.000 12.56 0.00 32.27 4.96
3197 10345 0.409092 ACAATGCAGATGTTGGGGGA 59.591 50.000 2.25 0.00 0.00 4.81
3220 10368 0.603707 GCTGTGAGCCTGCTGTTGTA 60.604 55.000 0.00 0.00 34.48 2.41
3241 10389 3.545703 AGGAAGATCAATTTCGCGGATT 58.454 40.909 6.13 4.38 0.00 3.01
3247 10395 5.116180 AGATCAATTTCGCGGATTCTTGTA 58.884 37.500 6.13 0.00 0.00 2.41
3258 10406 4.083110 GCGGATTCTTGTATGCATATGCTT 60.083 41.667 27.13 22.82 42.66 3.91
3260 10408 5.159209 GGATTCTTGTATGCATATGCTTGC 58.841 41.667 27.13 23.35 42.66 4.01
3296 10444 7.120285 CACAAGGACATGATGTTGTTCTATTCT 59.880 37.037 0.00 0.00 34.22 2.40
3337 10485 3.880047 AATTGTGGATGCAGATGGTTG 57.120 42.857 0.00 0.00 0.00 3.77
3384 10532 7.320443 TGGATCTGTTACAATAATGCTGAAC 57.680 36.000 0.00 0.00 0.00 3.18
3404 10553 7.306225 GCTGAACTTAATTGTTTTTGTCAGCTC 60.306 37.037 13.13 0.00 38.55 4.09
3461 10610 5.840243 TGGAATTCTGCCAGATTACATTG 57.160 39.130 5.23 0.00 0.00 2.82
3462 10611 5.508567 TGGAATTCTGCCAGATTACATTGA 58.491 37.500 5.23 0.00 0.00 2.57
3463 10612 6.131264 TGGAATTCTGCCAGATTACATTGAT 58.869 36.000 5.23 0.00 0.00 2.57
3464 10613 6.263842 TGGAATTCTGCCAGATTACATTGATC 59.736 38.462 5.23 0.00 0.00 2.92
3466 10615 7.014038 GGAATTCTGCCAGATTACATTGATCTT 59.986 37.037 5.23 0.00 31.66 2.40
3467 10616 6.688637 TTCTGCCAGATTACATTGATCTTG 57.311 37.500 0.00 0.00 31.66 3.02
3468 10617 5.748402 TCTGCCAGATTACATTGATCTTGT 58.252 37.500 0.00 7.00 31.66 3.16
3469 10618 5.587443 TCTGCCAGATTACATTGATCTTGTG 59.413 40.000 10.87 2.49 31.66 3.33
3470 10619 5.255687 TGCCAGATTACATTGATCTTGTGT 58.744 37.500 10.87 7.51 31.66 3.72
3471 10620 5.711506 TGCCAGATTACATTGATCTTGTGTT 59.288 36.000 10.87 0.76 31.66 3.32
3472 10621 6.209192 TGCCAGATTACATTGATCTTGTGTTT 59.791 34.615 10.87 0.00 31.66 2.83
3473 10622 6.529125 GCCAGATTACATTGATCTTGTGTTTG 59.471 38.462 10.87 6.30 31.66 2.93
3520 10675 4.631813 GGAATTCAGAGTGCTATTGTCGTT 59.368 41.667 7.93 0.00 0.00 3.85
3521 10676 5.810587 GGAATTCAGAGTGCTATTGTCGTTA 59.189 40.000 7.93 0.00 0.00 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 28 5.354842 TGGGGTTTAAAATTTTGTTCGGT 57.645 34.783 13.76 0.00 0.00 4.69
81 84 9.651718 CACTACTTCTCAAATTTTGTTCAGTAC 57.348 33.333 8.89 0.00 0.00 2.73
150 173 9.522804 AATGTTCGCTTTTATAAAAGTTTGTGA 57.477 25.926 29.56 18.38 45.48 3.58
156 179 9.959749 TCAGAAAATGTTCGCTTTTATAAAAGT 57.040 25.926 29.56 13.41 45.48 2.66
162 185 9.696917 AGAAATTCAGAAAATGTTCGCTTTTAT 57.303 25.926 0.00 0.00 38.90 1.40
163 186 8.967218 CAGAAATTCAGAAAATGTTCGCTTTTA 58.033 29.630 0.00 0.00 38.90 1.52
164 187 7.706179 TCAGAAATTCAGAAAATGTTCGCTTTT 59.294 29.630 0.00 0.00 38.90 2.27
165 188 7.202526 TCAGAAATTCAGAAAATGTTCGCTTT 58.797 30.769 0.00 0.00 38.90 3.51
166 189 6.738114 TCAGAAATTCAGAAAATGTTCGCTT 58.262 32.000 0.00 0.00 38.90 4.68
167 190 6.317789 TCAGAAATTCAGAAAATGTTCGCT 57.682 33.333 0.00 0.00 38.90 4.93
168 191 6.991485 TTCAGAAATTCAGAAAATGTTCGC 57.009 33.333 0.00 0.00 38.90 4.70
448 472 2.616001 CGATCCCGGTTTTGGAAACCTA 60.616 50.000 17.62 6.39 38.15 3.08
500 524 2.026301 CTTCCTCGCGATCGACCC 59.974 66.667 21.57 0.00 40.21 4.46
505 529 1.692296 GCATAGTCTTCCTCGCGATC 58.308 55.000 10.36 0.00 0.00 3.69
521 545 0.817013 AAAATGTCGGGCAATCGCAT 59.183 45.000 0.00 0.00 41.24 4.73
530 554 2.179018 CTGCGCCAAAATGTCGGG 59.821 61.111 4.18 0.00 0.00 5.14
556 580 3.200483 ACGCAACGGGAATTTCCTATAC 58.800 45.455 14.95 0.00 36.57 1.47
594 618 5.472137 TGGCTTCAGTTAATCGCTACTTTTT 59.528 36.000 0.00 0.00 0.00 1.94
595 619 5.001232 TGGCTTCAGTTAATCGCTACTTTT 58.999 37.500 0.00 0.00 0.00 2.27
596 620 4.575885 TGGCTTCAGTTAATCGCTACTTT 58.424 39.130 0.00 0.00 0.00 2.66
597 621 4.202245 TGGCTTCAGTTAATCGCTACTT 57.798 40.909 0.00 0.00 0.00 2.24
598 622 3.887621 TGGCTTCAGTTAATCGCTACT 57.112 42.857 0.00 0.00 0.00 2.57
599 623 3.182572 CGATGGCTTCAGTTAATCGCTAC 59.817 47.826 1.08 0.00 34.42 3.58
600 624 3.067601 TCGATGGCTTCAGTTAATCGCTA 59.932 43.478 1.08 0.00 39.86 4.26
601 625 2.159099 TCGATGGCTTCAGTTAATCGCT 60.159 45.455 1.08 0.00 39.86 4.93
602 626 2.201732 TCGATGGCTTCAGTTAATCGC 58.798 47.619 1.08 0.00 39.86 4.58
603 627 2.797156 CCTCGATGGCTTCAGTTAATCG 59.203 50.000 1.08 0.00 41.04 3.34
604 628 3.134458 CCCTCGATGGCTTCAGTTAATC 58.866 50.000 0.00 0.00 0.00 1.75
605 629 2.771943 TCCCTCGATGGCTTCAGTTAAT 59.228 45.455 1.18 0.00 0.00 1.40
606 630 2.093658 GTCCCTCGATGGCTTCAGTTAA 60.094 50.000 1.18 0.00 0.00 2.01
607 631 1.480954 GTCCCTCGATGGCTTCAGTTA 59.519 52.381 1.18 0.00 0.00 2.24
608 632 0.250513 GTCCCTCGATGGCTTCAGTT 59.749 55.000 1.18 0.00 0.00 3.16
609 633 1.901085 GTCCCTCGATGGCTTCAGT 59.099 57.895 1.18 0.00 0.00 3.41
610 634 1.227089 CGTCCCTCGATGGCTTCAG 60.227 63.158 1.18 0.00 42.86 3.02
611 635 2.721167 CCGTCCCTCGATGGCTTCA 61.721 63.158 1.18 0.00 38.35 3.02
612 636 2.107141 CCGTCCCTCGATGGCTTC 59.893 66.667 1.18 0.00 38.35 3.86
623 647 4.557605 TAACGATCGCGCCGTCCC 62.558 66.667 22.36 0.00 42.48 4.46
624 648 3.022914 CTAACGATCGCGCCGTCC 61.023 66.667 22.36 0.76 42.48 4.79
625 649 3.022914 CCTAACGATCGCGCCGTC 61.023 66.667 22.36 10.56 42.48 4.79
626 650 4.564116 CCCTAACGATCGCGCCGT 62.564 66.667 16.60 17.99 42.48 5.68
628 652 4.963428 CCCCCTAACGATCGCGCC 62.963 72.222 16.60 0.00 42.48 6.53
656 680 4.489771 ATTCAAGGGGGCGAGCGG 62.490 66.667 0.00 0.00 0.00 5.52
657 681 2.897350 GATTCAAGGGGGCGAGCG 60.897 66.667 0.00 0.00 0.00 5.03
658 682 2.517166 GGATTCAAGGGGGCGAGC 60.517 66.667 0.00 0.00 0.00 5.03
659 683 2.203070 CGGATTCAAGGGGGCGAG 60.203 66.667 0.00 0.00 0.00 5.03
660 684 3.006728 ACGGATTCAAGGGGGCGA 61.007 61.111 0.00 0.00 0.00 5.54
661 685 2.824041 CACGGATTCAAGGGGGCG 60.824 66.667 0.00 0.00 0.00 6.13
662 686 3.140814 GCACGGATTCAAGGGGGC 61.141 66.667 0.00 0.00 0.00 5.80
663 687 1.632018 TAGGCACGGATTCAAGGGGG 61.632 60.000 0.00 0.00 0.00 5.40
664 688 0.463833 GTAGGCACGGATTCAAGGGG 60.464 60.000 0.00 0.00 0.00 4.79
665 689 0.810031 CGTAGGCACGGATTCAAGGG 60.810 60.000 2.23 0.00 44.59 3.95
666 690 2.677971 CGTAGGCACGGATTCAAGG 58.322 57.895 2.23 0.00 44.59 3.61
678 702 2.287457 TACATCGCCCACACGTAGGC 62.287 60.000 12.24 12.24 46.17 3.93
679 703 0.526954 GTACATCGCCCACACGTAGG 60.527 60.000 0.00 0.00 0.00 3.18
680 704 0.171679 TGTACATCGCCCACACGTAG 59.828 55.000 0.00 0.00 0.00 3.51
681 705 0.602060 TTGTACATCGCCCACACGTA 59.398 50.000 0.00 0.00 0.00 3.57
682 706 0.249953 TTTGTACATCGCCCACACGT 60.250 50.000 0.00 0.00 0.00 4.49
683 707 0.165079 GTTTGTACATCGCCCACACG 59.835 55.000 0.00 0.00 0.00 4.49
684 708 0.165079 CGTTTGTACATCGCCCACAC 59.835 55.000 0.00 0.00 0.00 3.82
685 709 1.570347 GCGTTTGTACATCGCCCACA 61.570 55.000 25.19 0.00 43.41 4.17
686 710 1.133869 GCGTTTGTACATCGCCCAC 59.866 57.895 25.19 7.32 43.41 4.61
687 711 3.568686 GCGTTTGTACATCGCCCA 58.431 55.556 25.19 0.00 43.41 5.36
691 715 0.165079 GTGTGGGCGTTTGTACATCG 59.835 55.000 13.99 13.99 0.00 3.84
692 716 0.165079 CGTGTGGGCGTTTGTACATC 59.835 55.000 0.00 0.00 0.00 3.06
693 717 0.533308 ACGTGTGGGCGTTTGTACAT 60.533 50.000 0.00 0.00 43.04 2.29
694 718 1.153409 ACGTGTGGGCGTTTGTACA 60.153 52.632 0.00 0.00 43.04 2.90
695 719 1.277440 CACGTGTGGGCGTTTGTAC 59.723 57.895 7.58 0.00 43.83 2.90
696 720 1.153409 ACACGTGTGGGCGTTTGTA 60.153 52.632 22.71 0.00 43.83 2.41
697 721 2.437002 ACACGTGTGGGCGTTTGT 60.437 55.556 22.71 0.00 43.83 2.83
698 722 2.024022 CACACGTGTGGGCGTTTG 59.976 61.111 35.65 12.14 43.83 2.93
699 723 2.125065 TCACACGTGTGGGCGTTT 60.125 55.556 39.88 7.04 45.65 3.60
700 724 2.587753 CTCACACGTGTGGGCGTT 60.588 61.111 39.88 7.83 45.65 4.84
708 732 3.337889 CGCCCACACTCACACGTG 61.338 66.667 15.48 15.48 40.67 4.49
709 733 2.018727 TAACGCCCACACTCACACGT 62.019 55.000 0.00 0.00 34.85 4.49
710 734 1.282248 CTAACGCCCACACTCACACG 61.282 60.000 0.00 0.00 0.00 4.49
711 735 0.249741 ACTAACGCCCACACTCACAC 60.250 55.000 0.00 0.00 0.00 3.82
712 736 0.466543 AACTAACGCCCACACTCACA 59.533 50.000 0.00 0.00 0.00 3.58
713 737 1.589803 AAACTAACGCCCACACTCAC 58.410 50.000 0.00 0.00 0.00 3.51
714 738 2.335316 AAAACTAACGCCCACACTCA 57.665 45.000 0.00 0.00 0.00 3.41
743 767 9.994432 CACATTTGTTGCAAATAAAAGGTTAAA 57.006 25.926 14.46 1.39 40.30 1.52
808 835 1.585006 GGTCGTCACTCGTCACCAT 59.415 57.895 0.00 0.00 36.73 3.55
854 881 3.591254 GAGCAGGTGGGTGGACGAC 62.591 68.421 0.00 0.00 0.00 4.34
855 882 3.311110 GAGCAGGTGGGTGGACGA 61.311 66.667 0.00 0.00 0.00 4.20
909 937 3.638484 GCGGCTGCTTTCTTTCTTTTAA 58.362 40.909 11.21 0.00 38.39 1.52
971 1017 1.375551 GGGCGGTATATAAATGGCGG 58.624 55.000 0.00 0.00 0.00 6.13
1032 1081 1.140589 CCTCAGCATCTTCGTCGCT 59.859 57.895 0.00 0.00 36.10 4.93
1063 1125 1.075542 CGACGGCTGCTGTTGAAATA 58.924 50.000 21.83 0.00 0.00 1.40
1186 1345 2.677979 GGAACAAGAAGACGGCGGC 61.678 63.158 13.24 8.92 0.00 6.53
1296 1458 1.213013 CTCGGACTGGGACAACGAG 59.787 63.158 0.00 0.00 45.29 4.18
1382 1566 7.673082 AGAAATTCAGAGTTGATTCATCCCTTT 59.327 33.333 0.00 0.00 32.27 3.11
1384 1568 6.602406 CAGAAATTCAGAGTTGATTCATCCCT 59.398 38.462 0.00 0.00 32.27 4.20
1390 1574 6.183360 CCCCATCAGAAATTCAGAGTTGATTC 60.183 42.308 0.00 0.00 32.27 2.52
1431 1618 6.864685 CAGCAGCATCAAGAAAAGATAAACAA 59.135 34.615 0.00 0.00 0.00 2.83
1437 1624 3.090037 AGCAGCAGCATCAAGAAAAGAT 58.910 40.909 3.17 0.00 45.49 2.40
1535 1723 4.530857 CCTCGGTGCGGATGGTCC 62.531 72.222 0.00 0.00 0.00 4.46
1659 1923 0.893270 CCCCCTGCATCGTCACAAAA 60.893 55.000 0.00 0.00 0.00 2.44
1759 2035 5.838521 ACATAGAATGGGTCAAGTGGTTTTT 59.161 36.000 0.00 0.00 33.60 1.94
1763 2039 4.042809 TCAACATAGAATGGGTCAAGTGGT 59.957 41.667 0.00 0.00 33.60 4.16
1782 2078 3.495001 GCAGTGTTAGTTCTCAGGTCAAC 59.505 47.826 0.00 0.00 0.00 3.18
1788 2084 4.814147 TCAGATGCAGTGTTAGTTCTCAG 58.186 43.478 0.00 0.00 0.00 3.35
1904 2202 0.036388 TGGAAGCGAGGTTGATCCAC 60.036 55.000 0.00 0.00 35.33 4.02
1919 2217 7.437713 AGATACATACATCTTGTCCTTGGAA 57.562 36.000 0.00 0.00 30.93 3.53
1956 2282 9.498176 TTGACTTCCTATGATTCATATGATGTG 57.502 33.333 23.14 14.46 33.34 3.21
1992 2318 2.679336 TCGAGTGATTGGTCATTGCATG 59.321 45.455 0.00 0.00 36.60 4.06
1993 2319 2.679837 GTCGAGTGATTGGTCATTGCAT 59.320 45.455 0.00 0.00 36.60 3.96
2032 2378 3.032609 CGCGGCTTGATCCTAGCG 61.033 66.667 0.00 7.15 39.54 4.26
2203 2549 1.229951 AGGGATTGGCTGGTGGAGA 60.230 57.895 0.00 0.00 0.00 3.71
2233 2579 3.179048 CTCGATGATGTACACGAAAGCA 58.821 45.455 0.00 0.00 34.06 3.91
2368 2714 1.845809 GACCTGCAGCCAACACGAAG 61.846 60.000 8.66 0.00 0.00 3.79
2380 2726 1.073025 ATTCAACGGCTGACCTGCA 59.927 52.632 0.00 0.00 32.21 4.41
2492 2838 2.134630 CTCCACTGGCTGGCCTTCTT 62.135 60.000 13.05 0.00 40.39 2.52
2523 2869 3.588955 TCACATCGACAAACTGATCAGG 58.411 45.455 26.08 11.41 0.00 3.86
2561 2907 1.442520 CTTTGCCCGACAATGCACG 60.443 57.895 0.00 0.00 38.31 5.34
2573 2919 0.041090 TTCCCTCCCAATCCTTTGCC 59.959 55.000 0.00 0.00 0.00 4.52
2579 2925 5.430886 CAATTTCAATTTCCCTCCCAATCC 58.569 41.667 0.00 0.00 0.00 3.01
2614 9024 6.722301 CACTCTACACAAAGGCATCAATATG 58.278 40.000 0.00 0.00 36.09 1.78
2643 9058 6.856938 ACAAATCGAAGATATACACGACTAGC 59.143 38.462 0.00 0.00 45.12 3.42
2757 9209 8.393366 CCATTATTTATCCTTGATCTGCGTATG 58.607 37.037 0.00 0.00 0.00 2.39
2758 9210 7.554118 CCCATTATTTATCCTTGATCTGCGTAT 59.446 37.037 0.00 0.00 0.00 3.06
2759 9211 6.878923 CCCATTATTTATCCTTGATCTGCGTA 59.121 38.462 0.00 0.00 0.00 4.42
2761 9213 5.707298 ACCCATTATTTATCCTTGATCTGCG 59.293 40.000 0.00 0.00 0.00 5.18
2787 9239 9.844790 CTGTTCAAATCTGAAGCACATTAAATA 57.155 29.630 0.00 0.00 42.27 1.40
2792 9244 4.586001 ACCTGTTCAAATCTGAAGCACATT 59.414 37.500 0.00 0.00 42.27 2.71
2794 9246 3.316029 CACCTGTTCAAATCTGAAGCACA 59.684 43.478 0.00 0.00 42.27 4.57
2798 9250 9.918630 ATTATTTTCACCTGTTCAAATCTGAAG 57.081 29.630 0.00 0.00 42.27 3.02
2884 10032 6.017026 CACTGCATCATGAGAGAAATAATGCT 60.017 38.462 12.01 0.00 38.96 3.79
2893 10041 2.743553 TCCTCACTGCATCATGAGAGA 58.256 47.619 19.25 13.41 44.32 3.10
2934 10082 2.147150 GTTGAGGGTCTTGTTCTGCTC 58.853 52.381 0.00 0.00 0.00 4.26
2968 10116 3.340814 TTCCATTCCAGACTTCAGAGC 57.659 47.619 0.00 0.00 0.00 4.09
2983 10131 6.778834 TTCATGTGCAATAGTGATTTCCAT 57.221 33.333 0.00 0.00 0.00 3.41
2990 10138 7.607607 AGTCATAGTTTTCATGTGCAATAGTGA 59.392 33.333 0.00 0.00 0.00 3.41
3030 10178 6.896021 TCACTATATTTAGGAACGGAGGAG 57.104 41.667 0.00 0.00 0.00 3.69
3031 10179 7.039223 GGAATCACTATATTTAGGAACGGAGGA 60.039 40.741 0.00 0.00 0.00 3.71
3032 10180 7.097834 GGAATCACTATATTTAGGAACGGAGG 58.902 42.308 0.00 0.00 0.00 4.30
3033 10181 7.667557 TGGAATCACTATATTTAGGAACGGAG 58.332 38.462 0.00 0.00 0.00 4.63
3035 10183 7.442656 ACTGGAATCACTATATTTAGGAACGG 58.557 38.462 0.00 0.00 0.00 4.44
3039 10187 9.837681 TCCATACTGGAATCACTATATTTAGGA 57.162 33.333 0.00 0.00 45.00 2.94
3060 10208 7.791029 TCATTTTGCTCTGTATGTAGTCCATA 58.209 34.615 0.00 0.00 34.86 2.74
3061 10209 6.653020 TCATTTTGCTCTGTATGTAGTCCAT 58.347 36.000 0.00 0.00 37.58 3.41
3062 10210 6.048732 TCATTTTGCTCTGTATGTAGTCCA 57.951 37.500 0.00 0.00 0.00 4.02
3063 10211 6.036517 CACTCATTTTGCTCTGTATGTAGTCC 59.963 42.308 0.00 0.00 0.00 3.85
3064 10212 6.036517 CCACTCATTTTGCTCTGTATGTAGTC 59.963 42.308 0.00 0.00 0.00 2.59
3065 10213 5.877012 CCACTCATTTTGCTCTGTATGTAGT 59.123 40.000 0.00 0.00 0.00 2.73
3066 10214 6.108687 TCCACTCATTTTGCTCTGTATGTAG 58.891 40.000 0.00 0.00 0.00 2.74
3067 10215 6.048732 TCCACTCATTTTGCTCTGTATGTA 57.951 37.500 0.00 0.00 0.00 2.29
3068 10216 4.910195 TCCACTCATTTTGCTCTGTATGT 58.090 39.130 0.00 0.00 0.00 2.29
3069 10217 5.008415 GGATCCACTCATTTTGCTCTGTATG 59.992 44.000 6.95 0.00 0.00 2.39
3070 10218 5.128919 GGATCCACTCATTTTGCTCTGTAT 58.871 41.667 6.95 0.00 0.00 2.29
3071 10219 4.019411 TGGATCCACTCATTTTGCTCTGTA 60.019 41.667 11.44 0.00 0.00 2.74
3072 10220 3.245016 TGGATCCACTCATTTTGCTCTGT 60.245 43.478 11.44 0.00 0.00 3.41
3073 10221 3.128242 GTGGATCCACTCATTTTGCTCTG 59.872 47.826 33.47 0.00 43.12 3.35
3074 10222 3.245016 TGTGGATCCACTCATTTTGCTCT 60.245 43.478 37.92 0.00 46.30 4.09
3075 10223 3.084039 TGTGGATCCACTCATTTTGCTC 58.916 45.455 37.92 13.97 46.30 4.26
3076 10224 2.821969 GTGTGGATCCACTCATTTTGCT 59.178 45.455 37.92 0.00 46.30 3.91
3077 10225 2.821969 AGTGTGGATCCACTCATTTTGC 59.178 45.455 37.92 20.03 41.84 3.68
3086 10234 3.927142 CGTTCTTTAGAGTGTGGATCCAC 59.073 47.826 33.97 33.97 46.33 4.02
3087 10235 3.576982 ACGTTCTTTAGAGTGTGGATCCA 59.423 43.478 11.44 11.44 0.00 3.41
3088 10236 4.082136 AGACGTTCTTTAGAGTGTGGATCC 60.082 45.833 4.20 4.20 0.00 3.36
3089 10237 5.061920 AGACGTTCTTTAGAGTGTGGATC 57.938 43.478 0.00 0.00 0.00 3.36
3090 10238 6.777213 ATAGACGTTCTTTAGAGTGTGGAT 57.223 37.500 0.00 0.00 0.00 3.41
3091 10239 7.876936 ATATAGACGTTCTTTAGAGTGTGGA 57.123 36.000 0.00 0.00 0.00 4.02
3092 10240 8.618677 TGTATATAGACGTTCTTTAGAGTGTGG 58.381 37.037 0.00 0.00 0.00 4.17
3095 10243 9.828852 GGATGTATATAGACGTTCTTTAGAGTG 57.171 37.037 0.00 0.00 0.00 3.51
3096 10244 8.719648 CGGATGTATATAGACGTTCTTTAGAGT 58.280 37.037 0.00 0.00 0.00 3.24
3097 10245 8.719648 ACGGATGTATATAGACGTTCTTTAGAG 58.280 37.037 0.00 0.00 0.00 2.43
3098 10246 8.613060 ACGGATGTATATAGACGTTCTTTAGA 57.387 34.615 0.00 0.00 0.00 2.10
3113 10261 7.499895 TCAATGCGGACTATATACGGATGTATA 59.500 37.037 0.00 0.00 45.18 1.47
3114 10262 6.320418 TCAATGCGGACTATATACGGATGTAT 59.680 38.462 0.00 0.00 43.62 2.29
3115 10263 5.648960 TCAATGCGGACTATATACGGATGTA 59.351 40.000 0.00 0.00 38.64 2.29
3116 10264 4.461431 TCAATGCGGACTATATACGGATGT 59.539 41.667 0.00 0.00 38.64 3.06
3117 10265 4.993905 TCAATGCGGACTATATACGGATG 58.006 43.478 0.00 0.00 38.64 3.51
3118 10266 5.654603 TTCAATGCGGACTATATACGGAT 57.345 39.130 0.00 0.00 40.35 4.18
3119 10267 5.456548 TTTCAATGCGGACTATATACGGA 57.543 39.130 0.00 0.00 0.00 4.69
3120 10268 6.100004 AGATTTCAATGCGGACTATATACGG 58.900 40.000 0.00 0.00 0.00 4.02
3121 10269 7.030165 AGAGATTTCAATGCGGACTATATACG 58.970 38.462 0.00 0.00 0.00 3.06
3122 10270 9.856488 TTAGAGATTTCAATGCGGACTATATAC 57.144 33.333 0.00 0.00 0.00 1.47
3124 10272 9.778741 TTTTAGAGATTTCAATGCGGACTATAT 57.221 29.630 0.00 0.00 0.00 0.86
3125 10273 9.607988 TTTTTAGAGATTTCAATGCGGACTATA 57.392 29.630 0.00 0.00 0.00 1.31
3126 10274 8.506168 TTTTTAGAGATTTCAATGCGGACTAT 57.494 30.769 0.00 0.00 0.00 2.12
3127 10275 7.822334 TCTTTTTAGAGATTTCAATGCGGACTA 59.178 33.333 0.00 0.00 0.00 2.59
3128 10276 6.655003 TCTTTTTAGAGATTTCAATGCGGACT 59.345 34.615 0.00 0.00 0.00 3.85
3129 10277 6.743172 GTCTTTTTAGAGATTTCAATGCGGAC 59.257 38.462 0.00 0.00 0.00 4.79
3130 10278 6.655003 AGTCTTTTTAGAGATTTCAATGCGGA 59.345 34.615 0.00 0.00 0.00 5.54
3131 10279 6.846350 AGTCTTTTTAGAGATTTCAATGCGG 58.154 36.000 0.00 0.00 0.00 5.69
3132 10280 9.994432 ATAAGTCTTTTTAGAGATTTCAATGCG 57.006 29.630 0.00 0.00 29.76 4.73
3148 10296 9.828039 CCCTCCGTTACTAAATATAAGTCTTTT 57.172 33.333 0.00 0.00 0.00 2.27
3149 10297 9.205513 TCCCTCCGTTACTAAATATAAGTCTTT 57.794 33.333 0.00 0.00 0.00 2.52
3150 10298 8.773033 TCCCTCCGTTACTAAATATAAGTCTT 57.227 34.615 0.00 0.00 0.00 3.01
3151 10299 8.003629 ACTCCCTCCGTTACTAAATATAAGTCT 58.996 37.037 0.00 0.00 0.00 3.24
3152 10300 8.175925 ACTCCCTCCGTTACTAAATATAAGTC 57.824 38.462 0.00 0.00 0.00 3.01
3153 10301 9.072375 GTACTCCCTCCGTTACTAAATATAAGT 57.928 37.037 0.00 0.00 0.00 2.24
3154 10302 9.071276 TGTACTCCCTCCGTTACTAAATATAAG 57.929 37.037 0.00 0.00 0.00 1.73
3155 10303 8.995027 TGTACTCCCTCCGTTACTAAATATAA 57.005 34.615 0.00 0.00 0.00 0.98
3156 10304 8.995027 TTGTACTCCCTCCGTTACTAAATATA 57.005 34.615 0.00 0.00 0.00 0.86
3157 10305 7.902920 TTGTACTCCCTCCGTTACTAAATAT 57.097 36.000 0.00 0.00 0.00 1.28
3158 10306 7.685155 GCATTGTACTCCCTCCGTTACTAAATA 60.685 40.741 0.00 0.00 0.00 1.40
3159 10307 6.579865 CATTGTACTCCCTCCGTTACTAAAT 58.420 40.000 0.00 0.00 0.00 1.40
3160 10308 5.625197 GCATTGTACTCCCTCCGTTACTAAA 60.625 44.000 0.00 0.00 0.00 1.85
3161 10309 4.142093 GCATTGTACTCCCTCCGTTACTAA 60.142 45.833 0.00 0.00 0.00 2.24
3162 10310 3.382546 GCATTGTACTCCCTCCGTTACTA 59.617 47.826 0.00 0.00 0.00 1.82
3163 10311 2.167900 GCATTGTACTCCCTCCGTTACT 59.832 50.000 0.00 0.00 0.00 2.24
3164 10312 2.093869 TGCATTGTACTCCCTCCGTTAC 60.094 50.000 0.00 0.00 0.00 2.50
3165 10313 2.167693 CTGCATTGTACTCCCTCCGTTA 59.832 50.000 0.00 0.00 0.00 3.18
3166 10314 0.981183 TGCATTGTACTCCCTCCGTT 59.019 50.000 0.00 0.00 0.00 4.44
3167 10315 0.537188 CTGCATTGTACTCCCTCCGT 59.463 55.000 0.00 0.00 0.00 4.69
3168 10316 0.824109 TCTGCATTGTACTCCCTCCG 59.176 55.000 0.00 0.00 0.00 4.63
3169 10317 2.171448 ACATCTGCATTGTACTCCCTCC 59.829 50.000 0.84 0.00 0.00 4.30
3170 10318 3.550437 ACATCTGCATTGTACTCCCTC 57.450 47.619 0.84 0.00 0.00 4.30
3171 10319 3.614092 CAACATCTGCATTGTACTCCCT 58.386 45.455 3.14 0.00 0.00 4.20
3172 10320 2.684881 CCAACATCTGCATTGTACTCCC 59.315 50.000 3.14 0.00 0.00 4.30
3173 10321 2.684881 CCCAACATCTGCATTGTACTCC 59.315 50.000 3.14 0.00 0.00 3.85
3174 10322 2.684881 CCCCAACATCTGCATTGTACTC 59.315 50.000 3.14 0.00 0.00 2.59
3175 10323 2.621407 CCCCCAACATCTGCATTGTACT 60.621 50.000 3.14 0.00 0.00 2.73
3176 10324 1.750778 CCCCCAACATCTGCATTGTAC 59.249 52.381 3.14 0.00 0.00 2.90
3177 10325 1.638070 TCCCCCAACATCTGCATTGTA 59.362 47.619 3.14 0.00 0.00 2.41
3178 10326 0.409092 TCCCCCAACATCTGCATTGT 59.591 50.000 0.00 0.00 0.00 2.71
3179 10327 0.819582 GTCCCCCAACATCTGCATTG 59.180 55.000 0.00 0.00 0.00 2.82
3180 10328 0.706433 AGTCCCCCAACATCTGCATT 59.294 50.000 0.00 0.00 0.00 3.56
3181 10329 0.033796 CAGTCCCCCAACATCTGCAT 60.034 55.000 0.00 0.00 0.00 3.96
3182 10330 1.379916 CAGTCCCCCAACATCTGCA 59.620 57.895 0.00 0.00 0.00 4.41
3183 10331 1.379044 CCAGTCCCCCAACATCTGC 60.379 63.158 0.00 0.00 0.00 4.26
3184 10332 1.379044 GCCAGTCCCCCAACATCTG 60.379 63.158 0.00 0.00 0.00 2.90
3185 10333 1.542375 AGCCAGTCCCCCAACATCT 60.542 57.895 0.00 0.00 0.00 2.90
3186 10334 1.379044 CAGCCAGTCCCCCAACATC 60.379 63.158 0.00 0.00 0.00 3.06
3187 10335 2.162906 ACAGCCAGTCCCCCAACAT 61.163 57.895 0.00 0.00 0.00 2.71
3188 10336 2.776526 ACAGCCAGTCCCCCAACA 60.777 61.111 0.00 0.00 0.00 3.33
3189 10337 2.282462 CACAGCCAGTCCCCCAAC 60.282 66.667 0.00 0.00 0.00 3.77
3190 10338 2.449518 TCACAGCCAGTCCCCCAA 60.450 61.111 0.00 0.00 0.00 4.12
3191 10339 2.930019 CTCACAGCCAGTCCCCCA 60.930 66.667 0.00 0.00 0.00 4.96
3192 10340 4.416738 GCTCACAGCCAGTCCCCC 62.417 72.222 0.00 0.00 34.48 5.40
3213 10361 5.563842 GCGAAATTGATCTTCCTACAACAG 58.436 41.667 0.00 0.00 0.00 3.16
3216 10364 3.621268 CCGCGAAATTGATCTTCCTACAA 59.379 43.478 8.23 0.00 0.00 2.41
3220 10368 2.691409 TCCGCGAAATTGATCTTCCT 57.309 45.000 8.23 0.00 0.00 3.36
3231 10379 2.351455 TGCATACAAGAATCCGCGAAA 58.649 42.857 8.23 0.00 0.00 3.46
3337 10485 6.458751 CCATACATTGTACACAGATCCTTTGC 60.459 42.308 0.00 0.00 0.00 3.68
3443 10592 6.832384 ACAAGATCAATGTAATCTGGCAGAAT 59.168 34.615 22.84 16.38 33.78 2.40
3498 10653 5.786401 AACGACAATAGCACTCTGAATTC 57.214 39.130 0.00 0.00 0.00 2.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.