Multiple sequence alignment - TraesCS5B01G535700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G535700 chr5B 100.000 3544 0 0 1 3544 691775013 691771470 0.000000e+00 6545.0
1 TraesCS5B01G535700 chr5B 80.440 1953 252 93 995 2885 691825606 691823722 0.000000e+00 1371.0
2 TraesCS5B01G535700 chr5B 81.557 1708 186 67 1118 2766 691798635 691796998 0.000000e+00 1290.0
3 TraesCS5B01G535700 chr5B 83.991 862 108 19 2050 2894 691942175 691941327 0.000000e+00 800.0
4 TraesCS5B01G535700 chr5B 91.149 531 43 4 3016 3544 411946207 411945679 0.000000e+00 717.0
5 TraesCS5B01G535700 chr5B 82.850 828 71 32 1173 1935 691943086 691942265 0.000000e+00 676.0
6 TraesCS5B01G535700 chr5B 86.542 535 55 12 1 533 88346719 88347238 1.100000e-159 573.0
7 TraesCS5B01G535700 chr5B 80.758 343 30 18 691 1021 691799005 691798687 5.910000e-58 235.0
8 TraesCS5B01G535700 chr5D 83.652 2300 210 87 716 2933 547841744 547839529 0.000000e+00 2012.0
9 TraesCS5B01G535700 chr5D 88.043 1748 135 41 1107 2821 547884225 547882519 0.000000e+00 2002.0
10 TraesCS5B01G535700 chr5D 81.452 1612 179 64 1193 2754 547892913 547891372 0.000000e+00 1210.0
11 TraesCS5B01G535700 chr5D 84.321 861 107 15 2050 2894 547925523 547924675 0.000000e+00 817.0
12 TraesCS5B01G535700 chr5D 81.371 875 90 39 1122 1935 547926452 547925590 0.000000e+00 645.0
13 TraesCS5B01G535700 chr5D 87.729 546 53 11 3010 3544 385122472 385123014 3.000000e-175 625.0
14 TraesCS5B01G535700 chr5D 86.535 557 61 10 1 556 78793809 78794352 5.060000e-168 601.0
15 TraesCS5B01G535700 chr5D 83.585 463 47 18 643 1082 547884673 547884217 1.180000e-109 407.0
16 TraesCS5B01G535700 chr5D 84.082 245 27 6 681 924 547842495 547842262 3.560000e-55 226.0
17 TraesCS5B01G535700 chr4A 85.956 1652 124 54 1176 2752 618419131 618417513 0.000000e+00 1666.0
18 TraesCS5B01G535700 chr4A 85.558 1281 115 20 1591 2854 618412596 618411369 0.000000e+00 1277.0
19 TraesCS5B01G535700 chr4A 84.198 848 96 22 2043 2870 618529024 618528195 0.000000e+00 789.0
20 TraesCS5B01G535700 chr4A 82.609 851 114 21 2053 2885 618463771 618462937 0.000000e+00 721.0
21 TraesCS5B01G535700 chr4A 82.415 853 101 27 1122 1935 618529945 618529103 0.000000e+00 699.0
22 TraesCS5B01G535700 chr4A 82.010 806 78 34 1193 1961 618464601 618463826 1.080000e-174 623.0
23 TraesCS5B01G535700 chr4A 77.092 502 66 28 1027 1490 618413148 618412658 9.830000e-61 244.0
24 TraesCS5B01G535700 chr4A 85.841 226 26 4 691 914 618413417 618413196 5.910000e-58 235.0
25 TraesCS5B01G535700 chr4A 100.000 37 0 0 995 1031 618419312 618419276 6.350000e-08 69.4
26 TraesCS5B01G535700 chr3B 90.789 532 39 9 3016 3544 147659058 147659582 0.000000e+00 702.0
27 TraesCS5B01G535700 chr6D 89.818 550 48 6 1 549 427085085 427084543 0.000000e+00 699.0
28 TraesCS5B01G535700 chr7D 89.013 537 51 8 3013 3544 178506443 178506976 0.000000e+00 658.0
29 TraesCS5B01G535700 chr7D 87.453 534 57 9 3016 3544 541425460 541425988 1.090000e-169 606.0
30 TraesCS5B01G535700 chr6A 88.825 519 49 6 1 517 571792676 571792165 2.320000e-176 628.0
31 TraesCS5B01G535700 chr2B 88.015 534 56 7 3016 3544 401808766 401808236 3.000000e-175 625.0
32 TraesCS5B01G535700 chr2B 83.485 551 77 12 10 554 44111241 44111783 5.280000e-138 501.0
33 TraesCS5B01G535700 chr6B 87.266 534 58 7 15 546 642912496 642911971 5.060000e-168 601.0
34 TraesCS5B01G535700 chr6B 84.392 551 66 12 1 548 10882728 10882195 1.130000e-144 523.0
35 TraesCS5B01G535700 chr7A 86.891 534 61 8 3013 3541 643024573 643025102 1.100000e-164 590.0
36 TraesCS5B01G535700 chr3A 86.867 533 62 8 3016 3544 455235394 455234866 1.100000e-164 590.0
37 TraesCS5B01G535700 chr1D 86.691 541 57 11 3016 3544 379579157 379578620 1.420000e-163 586.0
38 TraesCS5B01G535700 chr5A 85.688 552 62 14 1 548 74938208 74938746 1.850000e-157 566.0
39 TraesCS5B01G535700 chr1A 87.247 494 48 12 68 556 465560612 465561095 1.860000e-152 549.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G535700 chr5B 691771470 691775013 3543 True 6545.000000 6545 100.000000 1 3544 1 chr5B.!!$R2 3543
1 TraesCS5B01G535700 chr5B 691823722 691825606 1884 True 1371.000000 1371 80.440000 995 2885 1 chr5B.!!$R3 1890
2 TraesCS5B01G535700 chr5B 691796998 691799005 2007 True 762.500000 1290 81.157500 691 2766 2 chr5B.!!$R4 2075
3 TraesCS5B01G535700 chr5B 691941327 691943086 1759 True 738.000000 800 83.420500 1173 2894 2 chr5B.!!$R5 1721
4 TraesCS5B01G535700 chr5B 411945679 411946207 528 True 717.000000 717 91.149000 3016 3544 1 chr5B.!!$R1 528
5 TraesCS5B01G535700 chr5B 88346719 88347238 519 False 573.000000 573 86.542000 1 533 1 chr5B.!!$F1 532
6 TraesCS5B01G535700 chr5D 547891372 547892913 1541 True 1210.000000 1210 81.452000 1193 2754 1 chr5D.!!$R1 1561
7 TraesCS5B01G535700 chr5D 547882519 547884673 2154 True 1204.500000 2002 85.814000 643 2821 2 chr5D.!!$R3 2178
8 TraesCS5B01G535700 chr5D 547839529 547842495 2966 True 1119.000000 2012 83.867000 681 2933 2 chr5D.!!$R2 2252
9 TraesCS5B01G535700 chr5D 547924675 547926452 1777 True 731.000000 817 82.846000 1122 2894 2 chr5D.!!$R4 1772
10 TraesCS5B01G535700 chr5D 385122472 385123014 542 False 625.000000 625 87.729000 3010 3544 1 chr5D.!!$F2 534
11 TraesCS5B01G535700 chr5D 78793809 78794352 543 False 601.000000 601 86.535000 1 556 1 chr5D.!!$F1 555
12 TraesCS5B01G535700 chr4A 618417513 618419312 1799 True 867.700000 1666 92.978000 995 2752 2 chr4A.!!$R2 1757
13 TraesCS5B01G535700 chr4A 618528195 618529945 1750 True 744.000000 789 83.306500 1122 2870 2 chr4A.!!$R4 1748
14 TraesCS5B01G535700 chr4A 618462937 618464601 1664 True 672.000000 721 82.309500 1193 2885 2 chr4A.!!$R3 1692
15 TraesCS5B01G535700 chr4A 618411369 618413417 2048 True 585.333333 1277 82.830333 691 2854 3 chr4A.!!$R1 2163
16 TraesCS5B01G535700 chr3B 147659058 147659582 524 False 702.000000 702 90.789000 3016 3544 1 chr3B.!!$F1 528
17 TraesCS5B01G535700 chr6D 427084543 427085085 542 True 699.000000 699 89.818000 1 549 1 chr6D.!!$R1 548
18 TraesCS5B01G535700 chr7D 178506443 178506976 533 False 658.000000 658 89.013000 3013 3544 1 chr7D.!!$F1 531
19 TraesCS5B01G535700 chr7D 541425460 541425988 528 False 606.000000 606 87.453000 3016 3544 1 chr7D.!!$F2 528
20 TraesCS5B01G535700 chr6A 571792165 571792676 511 True 628.000000 628 88.825000 1 517 1 chr6A.!!$R1 516
21 TraesCS5B01G535700 chr2B 401808236 401808766 530 True 625.000000 625 88.015000 3016 3544 1 chr2B.!!$R1 528
22 TraesCS5B01G535700 chr2B 44111241 44111783 542 False 501.000000 501 83.485000 10 554 1 chr2B.!!$F1 544
23 TraesCS5B01G535700 chr6B 642911971 642912496 525 True 601.000000 601 87.266000 15 546 1 chr6B.!!$R2 531
24 TraesCS5B01G535700 chr6B 10882195 10882728 533 True 523.000000 523 84.392000 1 548 1 chr6B.!!$R1 547
25 TraesCS5B01G535700 chr7A 643024573 643025102 529 False 590.000000 590 86.891000 3013 3541 1 chr7A.!!$F1 528
26 TraesCS5B01G535700 chr3A 455234866 455235394 528 True 590.000000 590 86.867000 3016 3544 1 chr3A.!!$R1 528
27 TraesCS5B01G535700 chr1D 379578620 379579157 537 True 586.000000 586 86.691000 3016 3544 1 chr1D.!!$R1 528
28 TraesCS5B01G535700 chr5A 74938208 74938746 538 False 566.000000 566 85.688000 1 548 1 chr5A.!!$F1 547

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
565 614 0.035247 TGGGCGGCGGTAAATTTACT 60.035 50.0 23.89 0.0 34.16 2.24 F
681 730 0.302288 TTCGTGCTTACGTGTGTTGC 59.698 50.0 0.00 0.0 0.00 4.17 F
1106 1917 0.526524 CATCGTCTTCCTCCTGCGTC 60.527 60.0 0.00 0.0 0.00 5.19 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1751 2787 0.251698 TGAATGGGCCAAGTGCATGA 60.252 50.0 11.89 0.0 43.89 3.07 R
2222 3296 0.321653 GGATCGGTTGGTGAAGCTGT 60.322 55.0 0.00 0.0 0.00 4.40 R
2906 4005 0.035036 CAGCCTCATGATCCTCGCAT 59.965 55.0 0.00 0.0 0.00 4.73 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 47 8.175069 TGTATTTTTGATACGAGTGAAATCAGC 58.825 33.333 0.00 0.00 31.64 4.26
145 181 8.909708 TGTTTTCTTAATTGTGAAGTCAGTTG 57.090 30.769 0.00 0.00 0.00 3.16
154 190 7.807977 ATTGTGAAGTCAGTTGTTTAGACAT 57.192 32.000 0.00 0.00 35.29 3.06
222 264 3.978855 GCCAAACTGAATGAAACGGTAAC 59.021 43.478 0.00 0.00 0.00 2.50
279 322 7.657761 TGGTCTTGTCTTAAAGATCTTGTCTTC 59.342 37.037 9.17 1.39 46.39 2.87
411 456 2.434336 GGTCTGGGAGTACACATGCATA 59.566 50.000 0.00 0.00 0.00 3.14
412 457 3.071602 GGTCTGGGAGTACACATGCATAT 59.928 47.826 0.00 0.00 0.00 1.78
413 458 4.444876 GGTCTGGGAGTACACATGCATATT 60.445 45.833 0.00 0.00 0.00 1.28
415 460 5.696724 GTCTGGGAGTACACATGCATATTAC 59.303 44.000 0.00 1.05 0.00 1.89
416 461 4.627058 TGGGAGTACACATGCATATTACG 58.373 43.478 0.00 0.00 0.00 3.18
453 500 3.638160 GGGCATGTTCATGTATTGGTCAT 59.362 43.478 13.24 0.00 0.00 3.06
464 511 2.205022 ATTGGTCATGTGGTGTCAGG 57.795 50.000 0.00 0.00 0.00 3.86
481 528 6.149807 GGTGTCAGGCTAGTATAGAGATGTAC 59.850 46.154 0.00 0.00 42.77 2.90
492 539 2.540383 AGAGATGTACTTCAGCCCACA 58.460 47.619 11.02 0.00 32.20 4.17
496 543 4.074970 AGATGTACTTCAGCCCACAAAAG 58.925 43.478 11.02 0.00 32.20 2.27
505 553 3.573967 TCAGCCCACAAAAGGATTTCTTC 59.426 43.478 0.00 0.00 37.28 2.87
536 584 5.564550 AGTCAAAGGATAGTGTGCATCTTT 58.435 37.500 0.00 0.00 0.00 2.52
549 598 6.035843 GTGTGCATCTTTATGTTAACATGGG 58.964 40.000 27.62 17.47 37.15 4.00
556 605 2.748647 GTTAACATGGGCGGCGGT 60.749 61.111 9.78 0.00 0.00 5.68
557 606 1.449956 GTTAACATGGGCGGCGGTA 60.450 57.895 9.78 0.00 0.00 4.02
558 607 1.025647 GTTAACATGGGCGGCGGTAA 61.026 55.000 9.78 0.00 0.00 2.85
559 608 0.322277 TTAACATGGGCGGCGGTAAA 60.322 50.000 9.78 0.00 0.00 2.01
560 609 0.107116 TAACATGGGCGGCGGTAAAT 60.107 50.000 9.78 0.00 0.00 1.40
561 610 0.968393 AACATGGGCGGCGGTAAATT 60.968 50.000 9.78 0.00 0.00 1.82
562 611 0.968393 ACATGGGCGGCGGTAAATTT 60.968 50.000 9.78 0.00 0.00 1.82
563 612 1.025812 CATGGGCGGCGGTAAATTTA 58.974 50.000 9.78 0.00 0.00 1.40
564 613 1.026584 ATGGGCGGCGGTAAATTTAC 58.973 50.000 18.30 18.30 0.00 2.01
565 614 0.035247 TGGGCGGCGGTAAATTTACT 60.035 50.000 23.89 0.00 34.16 2.24
566 615 1.097232 GGGCGGCGGTAAATTTACTT 58.903 50.000 23.89 0.00 34.16 2.24
567 616 2.287769 GGGCGGCGGTAAATTTACTTA 58.712 47.619 23.89 0.00 34.16 2.24
568 617 2.880268 GGGCGGCGGTAAATTTACTTAT 59.120 45.455 23.89 0.00 34.16 1.73
569 618 3.304190 GGGCGGCGGTAAATTTACTTATG 60.304 47.826 23.89 14.49 34.16 1.90
570 619 3.294102 GCGGCGGTAAATTTACTTATGC 58.706 45.455 23.89 20.74 34.16 3.14
571 620 3.537806 CGGCGGTAAATTTACTTATGCG 58.462 45.455 23.89 19.25 34.16 4.73
572 621 3.605231 CGGCGGTAAATTTACTTATGCGG 60.605 47.826 23.89 20.51 34.16 5.69
573 622 3.560896 GGCGGTAAATTTACTTATGCGGA 59.439 43.478 23.89 0.00 34.16 5.54
574 623 4.319261 GGCGGTAAATTTACTTATGCGGAG 60.319 45.833 23.89 8.69 34.16 4.63
575 624 4.508861 GCGGTAAATTTACTTATGCGGAGA 59.491 41.667 23.89 0.00 34.16 3.71
576 625 5.178809 GCGGTAAATTTACTTATGCGGAGAT 59.821 40.000 23.89 0.00 34.16 2.75
577 626 6.293244 GCGGTAAATTTACTTATGCGGAGATT 60.293 38.462 23.89 0.00 34.16 2.40
578 627 7.288672 CGGTAAATTTACTTATGCGGAGATTC 58.711 38.462 23.89 5.22 34.16 2.52
579 628 7.170998 CGGTAAATTTACTTATGCGGAGATTCT 59.829 37.037 23.89 0.00 34.16 2.40
580 629 9.485206 GGTAAATTTACTTATGCGGAGATTCTA 57.515 33.333 23.89 0.00 34.16 2.10
583 632 8.819643 AATTTACTTATGCGGAGATTCTAGAC 57.180 34.615 0.00 0.00 0.00 2.59
584 633 6.954487 TTACTTATGCGGAGATTCTAGACA 57.046 37.500 0.00 0.00 0.00 3.41
585 634 7.526142 TTACTTATGCGGAGATTCTAGACAT 57.474 36.000 0.00 0.00 0.00 3.06
586 635 6.412362 ACTTATGCGGAGATTCTAGACATT 57.588 37.500 0.00 0.00 0.00 2.71
587 636 6.219473 ACTTATGCGGAGATTCTAGACATTG 58.781 40.000 0.00 0.00 0.00 2.82
588 637 4.944619 ATGCGGAGATTCTAGACATTGA 57.055 40.909 0.00 0.00 0.00 2.57
589 638 4.944619 TGCGGAGATTCTAGACATTGAT 57.055 40.909 0.00 0.00 0.00 2.57
590 639 4.625028 TGCGGAGATTCTAGACATTGATG 58.375 43.478 0.00 0.00 0.00 3.07
591 640 4.100035 TGCGGAGATTCTAGACATTGATGT 59.900 41.667 0.00 0.00 45.16 3.06
592 641 5.053145 GCGGAGATTCTAGACATTGATGTT 58.947 41.667 0.00 0.00 41.95 2.71
593 642 5.176590 GCGGAGATTCTAGACATTGATGTTC 59.823 44.000 0.00 0.00 41.95 3.18
594 643 5.694006 CGGAGATTCTAGACATTGATGTTCC 59.306 44.000 0.00 0.00 41.95 3.62
595 644 6.586344 GGAGATTCTAGACATTGATGTTCCA 58.414 40.000 0.00 0.00 41.95 3.53
596 645 7.222872 GGAGATTCTAGACATTGATGTTCCAT 58.777 38.462 0.00 0.00 41.95 3.41
597 646 7.172875 GGAGATTCTAGACATTGATGTTCCATG 59.827 40.741 0.00 0.00 41.95 3.66
598 647 7.799081 AGATTCTAGACATTGATGTTCCATGA 58.201 34.615 0.00 0.00 41.95 3.07
599 648 8.270030 AGATTCTAGACATTGATGTTCCATGAA 58.730 33.333 0.00 1.27 41.95 2.57
600 649 8.991783 ATTCTAGACATTGATGTTCCATGAAT 57.008 30.769 0.00 3.18 41.95 2.57
601 650 8.812513 TTCTAGACATTGATGTTCCATGAATT 57.187 30.769 0.00 0.00 41.95 2.17
602 651 8.217131 TCTAGACATTGATGTTCCATGAATTG 57.783 34.615 0.00 0.00 41.95 2.32
603 652 8.048514 TCTAGACATTGATGTTCCATGAATTGA 58.951 33.333 0.00 0.00 41.95 2.57
604 653 7.470935 AGACATTGATGTTCCATGAATTGAA 57.529 32.000 0.00 0.00 41.95 2.69
605 654 8.074613 AGACATTGATGTTCCATGAATTGAAT 57.925 30.769 0.00 0.00 41.95 2.57
606 655 9.192642 AGACATTGATGTTCCATGAATTGAATA 57.807 29.630 0.00 0.00 41.95 1.75
607 656 9.976511 GACATTGATGTTCCATGAATTGAATAT 57.023 29.630 0.00 0.00 41.95 1.28
613 662 9.850628 GATGTTCCATGAATTGAATATATGTGG 57.149 33.333 0.00 0.00 0.00 4.17
614 663 7.660112 TGTTCCATGAATTGAATATATGTGGC 58.340 34.615 0.00 0.00 0.00 5.01
615 664 7.287235 TGTTCCATGAATTGAATATATGTGGCA 59.713 33.333 0.00 0.00 0.00 4.92
616 665 8.308931 GTTCCATGAATTGAATATATGTGGCAT 58.691 33.333 0.00 0.00 0.00 4.40
617 666 9.531158 TTCCATGAATTGAATATATGTGGCATA 57.469 29.630 0.00 0.00 0.00 3.14
618 667 9.703677 TCCATGAATTGAATATATGTGGCATAT 57.296 29.630 1.41 1.41 0.00 1.78
619 668 9.744468 CCATGAATTGAATATATGTGGCATATG 57.256 33.333 7.02 0.00 0.00 1.78
622 671 9.299465 TGAATTGAATATATGTGGCATATGTGT 57.701 29.630 7.02 0.00 0.00 3.72
627 676 9.964303 TGAATATATGTGGCATATGTGTTTTTC 57.036 29.630 7.02 4.52 0.00 2.29
628 677 9.117145 GAATATATGTGGCATATGTGTTTTTCG 57.883 33.333 7.02 0.00 0.00 3.46
629 678 4.782019 ATGTGGCATATGTGTTTTTCGT 57.218 36.364 4.29 0.00 0.00 3.85
630 679 4.153958 TGTGGCATATGTGTTTTTCGTC 57.846 40.909 4.29 0.00 0.00 4.20
631 680 3.565902 TGTGGCATATGTGTTTTTCGTCA 59.434 39.130 4.29 0.00 0.00 4.35
632 681 4.158384 GTGGCATATGTGTTTTTCGTCAG 58.842 43.478 4.29 0.00 0.00 3.51
633 682 3.818210 TGGCATATGTGTTTTTCGTCAGT 59.182 39.130 4.29 0.00 0.00 3.41
634 683 4.277174 TGGCATATGTGTTTTTCGTCAGTT 59.723 37.500 4.29 0.00 0.00 3.16
635 684 4.616802 GGCATATGTGTTTTTCGTCAGTTG 59.383 41.667 4.29 0.00 0.00 3.16
636 685 5.212194 GCATATGTGTTTTTCGTCAGTTGT 58.788 37.500 4.29 0.00 0.00 3.32
637 686 5.339611 GCATATGTGTTTTTCGTCAGTTGTC 59.660 40.000 4.29 0.00 0.00 3.18
638 687 6.658831 CATATGTGTTTTTCGTCAGTTGTCT 58.341 36.000 0.00 0.00 0.00 3.41
639 688 7.570507 GCATATGTGTTTTTCGTCAGTTGTCTA 60.571 37.037 4.29 0.00 0.00 2.59
640 689 6.861065 ATGTGTTTTTCGTCAGTTGTCTAT 57.139 33.333 0.00 0.00 0.00 1.98
641 690 6.671614 TGTGTTTTTCGTCAGTTGTCTATT 57.328 33.333 0.00 0.00 0.00 1.73
642 691 7.079182 TGTGTTTTTCGTCAGTTGTCTATTT 57.921 32.000 0.00 0.00 0.00 1.40
643 692 7.531716 TGTGTTTTTCGTCAGTTGTCTATTTT 58.468 30.769 0.00 0.00 0.00 1.82
644 693 7.483375 TGTGTTTTTCGTCAGTTGTCTATTTTG 59.517 33.333 0.00 0.00 0.00 2.44
645 694 7.483691 GTGTTTTTCGTCAGTTGTCTATTTTGT 59.516 33.333 0.00 0.00 0.00 2.83
646 695 8.024285 TGTTTTTCGTCAGTTGTCTATTTTGTT 58.976 29.630 0.00 0.00 0.00 2.83
647 696 8.521059 GTTTTTCGTCAGTTGTCTATTTTGTTC 58.479 33.333 0.00 0.00 0.00 3.18
648 697 5.917541 TCGTCAGTTGTCTATTTTGTTCC 57.082 39.130 0.00 0.00 0.00 3.62
649 698 5.361427 TCGTCAGTTGTCTATTTTGTTCCA 58.639 37.500 0.00 0.00 0.00 3.53
650 699 5.995282 TCGTCAGTTGTCTATTTTGTTCCAT 59.005 36.000 0.00 0.00 0.00 3.41
665 714 8.662369 TTTTGTTCCATATATGTTCGTTTTCG 57.338 30.769 11.73 0.00 45.64 3.46
667 716 6.767080 TGTTCCATATATGTTCGTTTTCGTG 58.233 36.000 11.73 0.00 44.46 4.35
668 717 5.398176 TCCATATATGTTCGTTTTCGTGC 57.602 39.130 11.73 0.00 44.46 5.34
669 718 5.113383 TCCATATATGTTCGTTTTCGTGCT 58.887 37.500 11.73 0.00 44.46 4.40
670 719 5.583061 TCCATATATGTTCGTTTTCGTGCTT 59.417 36.000 11.73 0.00 44.46 3.91
671 720 6.757478 TCCATATATGTTCGTTTTCGTGCTTA 59.243 34.615 11.73 0.00 44.46 3.09
672 721 6.844279 CCATATATGTTCGTTTTCGTGCTTAC 59.156 38.462 11.73 0.00 44.46 2.34
673 722 2.631663 TGTTCGTTTTCGTGCTTACG 57.368 45.000 0.00 0.00 44.46 3.18
675 724 2.283661 GTTCGTTTTCGTGCTTACGTG 58.716 47.619 0.00 0.00 44.46 4.49
677 726 1.255859 TCGTTTTCGTGCTTACGTGTG 59.744 47.619 0.00 0.00 44.46 3.82
678 727 1.005766 CGTTTTCGTGCTTACGTGTGT 60.006 47.619 0.00 0.00 38.65 3.72
679 728 2.535335 CGTTTTCGTGCTTACGTGTGTT 60.535 45.455 0.00 0.00 38.65 3.32
680 729 2.722936 TTTCGTGCTTACGTGTGTTG 57.277 45.000 0.00 0.00 0.00 3.33
681 730 0.302288 TTCGTGCTTACGTGTGTTGC 59.698 50.000 0.00 0.00 0.00 4.17
682 731 1.436446 CGTGCTTACGTGTGTTGCG 60.436 57.895 0.00 0.00 31.66 4.85
683 732 1.083015 GTGCTTACGTGTGTTGCGG 60.083 57.895 0.00 0.00 31.66 5.69
684 733 2.127383 GCTTACGTGTGTTGCGGC 60.127 61.111 0.00 0.00 0.00 6.53
686 735 2.203029 TTACGTGTGTTGCGGCCA 60.203 55.556 2.24 0.00 0.00 5.36
697 751 0.885196 TTGCGGCCAATGTTAACCTC 59.115 50.000 2.24 0.00 0.00 3.85
706 760 4.798387 GCCAATGTTAACCTCTTATTTGCG 59.202 41.667 2.48 0.00 0.00 4.85
709 763 5.813080 ATGTTAACCTCTTATTTGCGACC 57.187 39.130 2.48 0.00 0.00 4.79
711 765 4.453136 TGTTAACCTCTTATTTGCGACCAC 59.547 41.667 2.48 0.00 0.00 4.16
726 780 2.159841 CGACCACTGTAGATTTGTTGCG 60.160 50.000 0.00 0.00 0.00 4.85
846 1631 2.650778 CCGCAGCCCCTTTGAAAC 59.349 61.111 0.00 0.00 0.00 2.78
847 1632 1.903404 CCGCAGCCCCTTTGAAACT 60.903 57.895 0.00 0.00 0.00 2.66
851 1636 1.412343 GCAGCCCCTTTGAAACTGAAA 59.588 47.619 0.00 0.00 0.00 2.69
852 1637 2.158971 GCAGCCCCTTTGAAACTGAAAA 60.159 45.455 0.00 0.00 0.00 2.29
853 1638 3.721035 CAGCCCCTTTGAAACTGAAAAG 58.279 45.455 0.00 0.00 33.95 2.27
941 1740 3.266636 CCATTTATATACCGCCGCATCA 58.733 45.455 0.00 0.00 0.00 3.07
956 1755 1.337071 GCATCAACCATGATCCAGCAG 59.663 52.381 0.00 0.00 44.53 4.24
957 1756 2.927028 CATCAACCATGATCCAGCAGA 58.073 47.619 0.00 0.00 44.53 4.26
958 1757 2.408271 TCAACCATGATCCAGCAGAC 57.592 50.000 0.00 0.00 0.00 3.51
1040 1845 3.052490 CCCCTCTTCTCCTCTTCCTCTTA 60.052 52.174 0.00 0.00 0.00 2.10
1053 1864 7.513091 TCCTCTTCCTCTTATTCCCCTATTTAC 59.487 40.741 0.00 0.00 0.00 2.01
1063 1874 3.393687 TCCCCTATTTACATGGCACTCT 58.606 45.455 0.00 0.00 0.00 3.24
1077 1888 3.443925 CTCTCGCGCCTCACCAGA 61.444 66.667 0.00 0.00 0.00 3.86
1087 1898 1.474143 GCCTCACCAGACAGAATAGCC 60.474 57.143 0.00 0.00 0.00 3.93
1088 1899 1.833630 CCTCACCAGACAGAATAGCCA 59.166 52.381 0.00 0.00 0.00 4.75
1090 1901 3.494048 CCTCACCAGACAGAATAGCCATC 60.494 52.174 0.00 0.00 0.00 3.51
1091 1902 2.101415 TCACCAGACAGAATAGCCATCG 59.899 50.000 0.00 0.00 0.00 3.84
1092 1903 2.111384 ACCAGACAGAATAGCCATCGT 58.889 47.619 0.00 0.00 0.00 3.73
1093 1904 2.101582 ACCAGACAGAATAGCCATCGTC 59.898 50.000 0.00 0.00 0.00 4.20
1094 1905 2.363680 CCAGACAGAATAGCCATCGTCT 59.636 50.000 0.00 0.00 33.85 4.18
1095 1906 3.181471 CCAGACAGAATAGCCATCGTCTT 60.181 47.826 0.00 0.00 32.42 3.01
1096 1907 4.047822 CAGACAGAATAGCCATCGTCTTC 58.952 47.826 0.00 0.00 32.42 2.87
1097 1908 3.068873 AGACAGAATAGCCATCGTCTTCC 59.931 47.826 0.00 0.00 31.45 3.46
1098 1909 3.034635 ACAGAATAGCCATCGTCTTCCT 58.965 45.455 0.00 0.00 0.00 3.36
1099 1910 3.068873 ACAGAATAGCCATCGTCTTCCTC 59.931 47.826 0.00 0.00 0.00 3.71
1100 1911 2.630580 AGAATAGCCATCGTCTTCCTCC 59.369 50.000 0.00 0.00 0.00 4.30
1101 1912 2.390225 ATAGCCATCGTCTTCCTCCT 57.610 50.000 0.00 0.00 0.00 3.69
1102 1913 1.403814 TAGCCATCGTCTTCCTCCTG 58.596 55.000 0.00 0.00 0.00 3.86
1103 1914 1.522580 GCCATCGTCTTCCTCCTGC 60.523 63.158 0.00 0.00 0.00 4.85
1104 1915 1.227089 CCATCGTCTTCCTCCTGCG 60.227 63.158 0.00 0.00 0.00 5.18
1105 1916 1.513158 CATCGTCTTCCTCCTGCGT 59.487 57.895 0.00 0.00 0.00 5.24
1106 1917 0.526524 CATCGTCTTCCTCCTGCGTC 60.527 60.000 0.00 0.00 0.00 5.19
1107 1918 1.668101 ATCGTCTTCCTCCTGCGTCC 61.668 60.000 0.00 0.00 0.00 4.79
1108 1919 2.636412 CGTCTTCCTCCTGCGTCCA 61.636 63.158 0.00 0.00 0.00 4.02
1109 1920 1.079750 GTCTTCCTCCTGCGTCCAC 60.080 63.158 0.00 0.00 0.00 4.02
1116 1974 0.951040 CTCCTGCGTCCACAAAGACC 60.951 60.000 0.00 0.00 32.91 3.85
1134 2000 1.746220 ACCAGCTCTAGAAGTAGTGCG 59.254 52.381 0.00 0.00 46.18 5.34
1191 2063 1.873591 GTGATTCTTGTTGTGACGGCT 59.126 47.619 0.00 0.00 0.00 5.52
1231 2131 1.514811 CGATCATGTCTTCTTCGTCGC 59.485 52.381 0.00 0.00 0.00 5.19
1269 2190 1.590147 GTTCGAGAGCCCGAGGAAA 59.410 57.895 0.00 0.00 39.90 3.13
1359 2280 1.750297 GTACGACACCACCAACCCT 59.250 57.895 0.00 0.00 0.00 4.34
1366 2331 0.764890 CACCACCAACCCTCTCTCAA 59.235 55.000 0.00 0.00 0.00 3.02
1377 2342 5.109500 ACCCTCTCTCAATCTGAATTTCC 57.891 43.478 0.00 0.00 0.00 3.13
1385 2350 6.665695 TCTCAATCTGAATTTCCCATCATGA 58.334 36.000 0.00 0.00 0.00 3.07
1388 2353 4.868172 TCTGAATTTCCCATCATGAGGT 57.132 40.909 6.62 0.00 0.00 3.85
1391 2356 1.683943 ATTTCCCATCATGAGGTGCG 58.316 50.000 6.62 0.00 0.00 5.34
1557 2535 1.740296 GCTCCACGTACGCACCAAT 60.740 57.895 16.72 0.00 0.00 3.16
1562 2540 1.133598 CCACGTACGCACCAATCTCTA 59.866 52.381 16.72 0.00 0.00 2.43
1563 2547 2.416296 CCACGTACGCACCAATCTCTAA 60.416 50.000 16.72 0.00 0.00 2.10
1572 2587 4.635765 CGCACCAATCTCTAATTCTTCCAA 59.364 41.667 0.00 0.00 0.00 3.53
1593 2624 2.808543 ACTTTTTCTGCTCCATCGTGTC 59.191 45.455 0.00 0.00 0.00 3.67
1623 2654 2.540931 GGTGTTTGCTGAAATGCTGTTG 59.459 45.455 0.00 0.00 0.00 3.33
1652 2687 3.532896 GTTTCTGACGATGCAGGGA 57.467 52.632 0.00 0.00 36.55 4.20
1789 2839 6.018425 CCATTCATTCTATCTTGACTTGGACG 60.018 42.308 0.00 0.00 31.53 4.79
1792 2842 6.697395 TCATTCTATCTTGACTTGGACGAAA 58.303 36.000 0.00 0.00 0.00 3.46
1798 2848 3.629855 TCTTGACTTGGACGAAAATTGCA 59.370 39.130 0.00 0.00 0.00 4.08
2041 3096 5.702670 ACAATGACCAATCACTTGACACTAG 59.297 40.000 0.00 0.00 37.79 2.57
2222 3296 0.184692 TCACAATGCAACCAGGGTCA 59.815 50.000 0.00 0.00 0.00 4.02
2228 3302 1.529244 GCAACCAGGGTCACAGCTT 60.529 57.895 0.00 0.00 0.00 3.74
2234 3308 0.179020 CAGGGTCACAGCTTCACCAA 60.179 55.000 7.61 0.00 31.06 3.67
2242 3316 0.036010 CAGCTTCACCAACCGATCCT 60.036 55.000 0.00 0.00 0.00 3.24
2310 3384 2.808206 GGTAGGGAGGGCGATGTGG 61.808 68.421 0.00 0.00 0.00 4.17
2501 3575 3.306088 CCATGCAGGACTATTACTACGGG 60.306 52.174 0.00 0.00 41.22 5.28
2577 3651 5.695363 GTGTCTCGATGTGATGATGATCAAT 59.305 40.000 0.00 0.00 40.39 2.57
2589 3663 4.017808 TGATGATCAATGTCATGGTGCAA 58.982 39.130 0.00 0.00 38.88 4.08
2594 3668 1.266446 CAATGTCATGGTGCAACGTCA 59.734 47.619 0.00 0.00 38.12 4.35
2612 3698 3.055385 CGTCATGGAGGAAAGGGAAACTA 60.055 47.826 0.00 0.00 0.00 2.24
2618 3704 5.076873 TGGAGGAAAGGGAAACTACATTTG 58.923 41.667 0.00 0.00 0.00 2.32
2619 3705 5.077564 GGAGGAAAGGGAAACTACATTTGT 58.922 41.667 0.00 0.00 0.00 2.83
2620 3706 6.183361 TGGAGGAAAGGGAAACTACATTTGTA 60.183 38.462 0.00 0.00 0.00 2.41
2714 3811 9.959749 TGTTCATAGGAAAGAATGTAAAACAAC 57.040 29.630 0.00 0.00 34.13 3.32
2725 3822 8.238481 AGAATGTAAAACAACAAAACTGTGTG 57.762 30.769 0.00 0.00 32.02 3.82
2726 3823 8.085296 AGAATGTAAAACAACAAAACTGTGTGA 58.915 29.630 0.00 0.00 32.02 3.58
2727 3824 8.770438 AATGTAAAACAACAAAACTGTGTGAT 57.230 26.923 0.00 0.00 32.02 3.06
2728 3825 7.804614 TGTAAAACAACAAAACTGTGTGATC 57.195 32.000 0.00 0.00 0.00 2.92
2754 3851 8.577296 CGATGAGGAGGAAGTTAGTAATGATTA 58.423 37.037 0.00 0.00 0.00 1.75
2760 3857 9.699703 GGAGGAAGTTAGTAATGATTATCTCAC 57.300 37.037 0.00 0.00 36.48 3.51
2775 3872 8.892723 TGATTATCTCACAATAGCAAAACGAAT 58.107 29.630 0.00 0.00 0.00 3.34
2776 3873 9.722056 GATTATCTCACAATAGCAAAACGAATT 57.278 29.630 0.00 0.00 0.00 2.17
2777 3874 8.894409 TTATCTCACAATAGCAAAACGAATTG 57.106 30.769 0.00 0.00 35.83 2.32
2778 3875 6.312399 TCTCACAATAGCAAAACGAATTGT 57.688 33.333 0.00 0.00 41.87 2.71
2894 3993 2.472909 GGGCATGCGGTACAGCTTC 61.473 63.158 18.82 7.67 38.13 3.86
2906 4005 4.440663 CGGTACAGCTTCATTCTCTCATGA 60.441 45.833 0.00 0.00 0.00 3.07
2910 4009 3.523142 GCTTCATTCTCTCATGATGCG 57.477 47.619 0.00 0.00 41.69 4.73
2911 4010 3.129109 GCTTCATTCTCTCATGATGCGA 58.871 45.455 0.00 0.00 41.69 5.10
2915 4017 3.577415 TCATTCTCTCATGATGCGAGGAT 59.423 43.478 12.03 6.49 27.83 3.24
2922 4024 2.764439 ATGATGCGAGGATCATGAGG 57.236 50.000 17.26 0.00 40.80 3.86
2923 4025 0.034476 TGATGCGAGGATCATGAGGC 59.966 55.000 0.09 0.21 33.17 4.70
2933 4035 1.140452 GATCATGAGGCTGAAGCAGGA 59.860 52.381 0.09 0.00 44.36 3.86
2934 4036 0.540454 TCATGAGGCTGAAGCAGGAG 59.460 55.000 4.43 0.00 44.36 3.69
2935 4037 0.540454 CATGAGGCTGAAGCAGGAGA 59.460 55.000 4.43 0.00 44.36 3.71
2936 4038 0.540923 ATGAGGCTGAAGCAGGAGAC 59.459 55.000 4.43 0.00 44.36 3.36
2937 4039 1.220477 GAGGCTGAAGCAGGAGACC 59.780 63.158 4.43 0.00 44.36 3.85
2938 4040 2.250741 GAGGCTGAAGCAGGAGACCC 62.251 65.000 4.43 0.00 44.36 4.46
2939 4041 2.297129 GGCTGAAGCAGGAGACCCT 61.297 63.158 4.43 0.00 45.74 4.34
2940 4042 1.220477 GCTGAAGCAGGAGACCCTC 59.780 63.158 0.00 0.00 42.02 4.30
2941 4043 1.548357 GCTGAAGCAGGAGACCCTCA 61.548 60.000 0.00 0.00 42.02 3.86
2942 4044 0.979665 CTGAAGCAGGAGACCCTCAA 59.020 55.000 0.00 0.00 42.02 3.02
2943 4045 1.558756 CTGAAGCAGGAGACCCTCAAT 59.441 52.381 0.00 0.00 42.02 2.57
2944 4046 1.988107 TGAAGCAGGAGACCCTCAATT 59.012 47.619 0.00 0.00 42.02 2.32
2945 4047 2.290514 TGAAGCAGGAGACCCTCAATTG 60.291 50.000 0.00 0.00 42.02 2.32
2946 4048 1.661463 AGCAGGAGACCCTCAATTGA 58.339 50.000 8.12 8.12 42.02 2.57
2947 4049 1.988107 AGCAGGAGACCCTCAATTGAA 59.012 47.619 9.88 0.00 42.02 2.69
2948 4050 2.026449 AGCAGGAGACCCTCAATTGAAG 60.026 50.000 9.88 3.06 42.02 3.02
2949 4051 2.026822 GCAGGAGACCCTCAATTGAAGA 60.027 50.000 9.88 0.00 42.02 2.87
2950 4052 3.604582 CAGGAGACCCTCAATTGAAGAC 58.395 50.000 9.88 4.74 42.02 3.01
2951 4053 3.262915 CAGGAGACCCTCAATTGAAGACT 59.737 47.826 9.88 9.36 42.02 3.24
2952 4054 3.262915 AGGAGACCCTCAATTGAAGACTG 59.737 47.826 9.88 0.00 38.86 3.51
2953 4055 3.006247 GAGACCCTCAATTGAAGACTGC 58.994 50.000 9.88 0.00 0.00 4.40
2954 4056 2.087646 GACCCTCAATTGAAGACTGCC 58.912 52.381 9.88 0.00 0.00 4.85
2955 4057 1.089920 CCCTCAATTGAAGACTGCCG 58.910 55.000 9.88 0.00 0.00 5.69
2956 4058 1.339055 CCCTCAATTGAAGACTGCCGA 60.339 52.381 9.88 0.00 0.00 5.54
2957 4059 2.005451 CCTCAATTGAAGACTGCCGAG 58.995 52.381 9.88 0.00 0.00 4.63
2958 4060 1.396301 CTCAATTGAAGACTGCCGAGC 59.604 52.381 9.88 0.00 0.00 5.03
2959 4061 1.002430 TCAATTGAAGACTGCCGAGCT 59.998 47.619 5.45 0.00 0.00 4.09
2960 4062 1.396301 CAATTGAAGACTGCCGAGCTC 59.604 52.381 2.73 2.73 0.00 4.09
2961 4063 0.901124 ATTGAAGACTGCCGAGCTCT 59.099 50.000 12.85 0.00 0.00 4.09
2962 4064 0.037882 TTGAAGACTGCCGAGCTCTG 60.038 55.000 12.85 6.45 0.00 3.35
2963 4065 0.895559 TGAAGACTGCCGAGCTCTGA 60.896 55.000 12.85 0.00 0.00 3.27
2964 4066 0.457681 GAAGACTGCCGAGCTCTGAC 60.458 60.000 12.85 1.19 0.00 3.51
2965 4067 2.202544 GACTGCCGAGCTCTGACG 60.203 66.667 12.85 0.00 0.00 4.35
2966 4068 2.983930 GACTGCCGAGCTCTGACGT 61.984 63.158 12.85 5.84 0.00 4.34
2967 4069 2.505777 CTGCCGAGCTCTGACGTG 60.506 66.667 12.85 0.00 0.00 4.49
2968 4070 3.274455 CTGCCGAGCTCTGACGTGT 62.274 63.158 12.85 0.00 0.00 4.49
2969 4071 2.807045 GCCGAGCTCTGACGTGTG 60.807 66.667 12.85 0.00 0.00 3.82
2970 4072 2.126307 CCGAGCTCTGACGTGTGG 60.126 66.667 12.85 0.00 0.00 4.17
2971 4073 2.626780 CCGAGCTCTGACGTGTGGA 61.627 63.158 12.85 0.00 0.00 4.02
2972 4074 1.442857 CGAGCTCTGACGTGTGGAC 60.443 63.158 12.85 0.00 0.00 4.02
2973 4075 1.857318 CGAGCTCTGACGTGTGGACT 61.857 60.000 12.85 0.00 0.00 3.85
2974 4076 0.387878 GAGCTCTGACGTGTGGACTG 60.388 60.000 6.43 0.00 0.00 3.51
2975 4077 2.024319 GCTCTGACGTGTGGACTGC 61.024 63.158 0.00 0.00 0.00 4.40
2976 4078 1.363807 CTCTGACGTGTGGACTGCA 59.636 57.895 0.00 0.00 0.00 4.41
2977 4079 0.249447 CTCTGACGTGTGGACTGCAA 60.249 55.000 0.00 0.00 0.00 4.08
2978 4080 0.176910 TCTGACGTGTGGACTGCAAA 59.823 50.000 0.00 0.00 0.00 3.68
2979 4081 0.583438 CTGACGTGTGGACTGCAAAG 59.417 55.000 0.00 0.00 0.00 2.77
2980 4082 1.279840 GACGTGTGGACTGCAAAGC 59.720 57.895 0.00 0.00 0.00 3.51
2981 4083 1.153168 ACGTGTGGACTGCAAAGCT 60.153 52.632 0.00 0.00 0.00 3.74
2982 4084 0.105964 ACGTGTGGACTGCAAAGCTA 59.894 50.000 0.00 0.00 0.00 3.32
2983 4085 1.270839 ACGTGTGGACTGCAAAGCTAT 60.271 47.619 0.00 0.00 0.00 2.97
2984 4086 1.806542 CGTGTGGACTGCAAAGCTATT 59.193 47.619 0.00 0.00 0.00 1.73
2985 4087 2.413239 CGTGTGGACTGCAAAGCTATTG 60.413 50.000 0.00 0.00 0.00 1.90
2986 4088 1.541147 TGTGGACTGCAAAGCTATTGC 59.459 47.619 20.06 20.06 45.11 3.56
2996 4098 5.010249 GCAAAGCTATTGCACTTGAAAAC 57.990 39.130 21.23 0.00 44.34 2.43
2997 4099 4.746611 GCAAAGCTATTGCACTTGAAAACT 59.253 37.500 21.23 0.00 44.34 2.66
2998 4100 5.332808 GCAAAGCTATTGCACTTGAAAACTG 60.333 40.000 21.23 0.00 44.34 3.16
2999 4101 3.905784 AGCTATTGCACTTGAAAACTGC 58.094 40.909 1.12 0.00 42.74 4.40
3000 4102 2.658325 GCTATTGCACTTGAAAACTGCG 59.342 45.455 0.00 0.00 38.29 5.18
3001 4103 2.138596 ATTGCACTTGAAAACTGCGG 57.861 45.000 0.00 0.00 38.29 5.69
3002 4104 0.527385 TTGCACTTGAAAACTGCGGC 60.527 50.000 0.00 0.00 38.29 6.53
3003 4105 1.360192 GCACTTGAAAACTGCGGCT 59.640 52.632 0.00 0.00 0.00 5.52
3004 4106 0.591170 GCACTTGAAAACTGCGGCTA 59.409 50.000 0.00 0.00 0.00 3.93
3005 4107 1.663161 GCACTTGAAAACTGCGGCTAC 60.663 52.381 0.00 0.00 0.00 3.58
3006 4108 1.873591 CACTTGAAAACTGCGGCTACT 59.126 47.619 0.00 0.00 0.00 2.57
3007 4109 3.064207 CACTTGAAAACTGCGGCTACTA 58.936 45.455 0.00 0.00 0.00 1.82
3008 4110 3.496884 CACTTGAAAACTGCGGCTACTAA 59.503 43.478 0.00 0.00 0.00 2.24
3009 4111 3.746492 ACTTGAAAACTGCGGCTACTAAG 59.254 43.478 0.00 0.00 0.00 2.18
3010 4112 2.695359 TGAAAACTGCGGCTACTAAGG 58.305 47.619 0.00 0.00 0.00 2.69
3011 4113 1.397343 GAAAACTGCGGCTACTAAGGC 59.603 52.381 0.00 0.00 44.69 4.35
3012 4114 0.392595 AAACTGCGGCTACTAAGGCC 60.393 55.000 0.00 0.00 45.34 5.19
3144 4248 2.460757 GTTAGACAACCTACCGCCAA 57.539 50.000 0.00 0.00 0.00 4.52
3261 4366 0.178301 GTCTAACCCTACAGCCAGCC 59.822 60.000 0.00 0.00 0.00 4.85
3301 4408 1.173913 GCAGTTATTTTGCCCGACCT 58.826 50.000 0.00 0.00 35.54 3.85
3305 4414 0.033894 TTATTTTGCCCGACCTCCCC 60.034 55.000 0.00 0.00 0.00 4.81
3306 4415 2.260088 TATTTTGCCCGACCTCCCCG 62.260 60.000 0.00 0.00 0.00 5.73
3328 4437 0.113190 CTGCCTTTTCTTCCCACCCT 59.887 55.000 0.00 0.00 0.00 4.34
3330 4439 0.969149 GCCTTTTCTTCCCACCCTTG 59.031 55.000 0.00 0.00 0.00 3.61
3337 4447 3.829311 TTCCCACCCTTGCCCCTCT 62.829 63.158 0.00 0.00 0.00 3.69
3402 4520 2.175499 CTCTCATCTCCTCCACTCTCCT 59.825 54.545 0.00 0.00 0.00 3.69
3415 4533 2.100584 CACTCTCCTCCTTGGATCTTCG 59.899 54.545 0.00 0.00 45.16 3.79
3435 4554 3.493877 TCGCCGTTTCTTCATCGTTTTTA 59.506 39.130 0.00 0.00 0.00 1.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 7.064134 ACGCTGATTTCACTCGTATCAAAAATA 59.936 33.333 2.47 0.00 31.33 1.40
10 11 5.178623 ACGCTGATTTCACTCGTATCAAAAA 59.821 36.000 2.47 0.00 31.33 1.94
12 13 4.242475 ACGCTGATTTCACTCGTATCAAA 58.758 39.130 2.47 0.00 31.33 2.69
13 14 3.845178 ACGCTGATTTCACTCGTATCAA 58.155 40.909 2.47 0.00 31.33 2.57
138 174 8.138365 TGTTTCACTATGTCTAAACAACTGAC 57.862 34.615 0.00 0.00 38.50 3.51
198 240 1.001815 CCGTTTCATTCAGTTTGGCGT 60.002 47.619 0.00 0.00 0.00 5.68
199 241 1.001815 ACCGTTTCATTCAGTTTGGCG 60.002 47.619 0.00 0.00 0.00 5.69
380 425 1.323412 CTCCCAGACCACTCTATCGG 58.677 60.000 0.00 0.00 0.00 4.18
381 426 2.060050 ACTCCCAGACCACTCTATCG 57.940 55.000 0.00 0.00 0.00 2.92
382 427 3.633065 GTGTACTCCCAGACCACTCTATC 59.367 52.174 0.00 0.00 0.00 2.08
383 428 3.011369 TGTGTACTCCCAGACCACTCTAT 59.989 47.826 0.00 0.00 0.00 1.98
384 429 2.377531 TGTGTACTCCCAGACCACTCTA 59.622 50.000 0.00 0.00 0.00 2.43
385 430 1.147191 TGTGTACTCCCAGACCACTCT 59.853 52.381 0.00 0.00 0.00 3.24
411 456 2.888414 CCCCACAACCTTTTCACGTAAT 59.112 45.455 0.00 0.00 0.00 1.89
412 457 2.299521 CCCCACAACCTTTTCACGTAA 58.700 47.619 0.00 0.00 0.00 3.18
413 458 1.477195 CCCCCACAACCTTTTCACGTA 60.477 52.381 0.00 0.00 0.00 3.57
415 460 2.037871 CCCCCACAACCTTTTCACG 58.962 57.895 0.00 0.00 0.00 4.35
416 461 1.045911 TGCCCCCACAACCTTTTCAC 61.046 55.000 0.00 0.00 0.00 3.18
453 500 4.079958 TCTCTATACTAGCCTGACACCACA 60.080 45.833 0.00 0.00 0.00 4.17
464 511 6.127842 GGGCTGAAGTACATCTCTATACTAGC 60.128 46.154 0.00 0.00 34.40 3.42
481 528 3.575687 AGAAATCCTTTTGTGGGCTGAAG 59.424 43.478 0.00 0.00 0.00 3.02
496 543 8.943002 TCCTTTGACTAATAAACGAAGAAATCC 58.057 33.333 0.00 0.00 0.00 3.01
505 553 7.064134 TGCACACTATCCTTTGACTAATAAACG 59.936 37.037 0.00 0.00 0.00 3.60
536 584 0.816018 CCGCCGCCCATGTTAACATA 60.816 55.000 20.39 0.00 34.26 2.29
549 598 3.294102 GCATAAGTAAATTTACCGCCGC 58.706 45.455 21.92 16.42 34.19 6.53
557 606 9.262358 GTCTAGAATCTCCGCATAAGTAAATTT 57.738 33.333 0.00 0.00 0.00 1.82
558 607 8.421784 TGTCTAGAATCTCCGCATAAGTAAATT 58.578 33.333 0.00 0.00 0.00 1.82
559 608 7.952671 TGTCTAGAATCTCCGCATAAGTAAAT 58.047 34.615 0.00 0.00 0.00 1.40
560 609 7.342769 TGTCTAGAATCTCCGCATAAGTAAA 57.657 36.000 0.00 0.00 0.00 2.01
561 610 6.954487 TGTCTAGAATCTCCGCATAAGTAA 57.046 37.500 0.00 0.00 0.00 2.24
562 611 7.230712 TCAATGTCTAGAATCTCCGCATAAGTA 59.769 37.037 0.00 0.00 0.00 2.24
563 612 6.040955 TCAATGTCTAGAATCTCCGCATAAGT 59.959 38.462 0.00 0.00 0.00 2.24
564 613 6.450545 TCAATGTCTAGAATCTCCGCATAAG 58.549 40.000 0.00 0.00 0.00 1.73
565 614 6.405278 TCAATGTCTAGAATCTCCGCATAA 57.595 37.500 0.00 0.00 0.00 1.90
566 615 6.015095 ACATCAATGTCTAGAATCTCCGCATA 60.015 38.462 0.00 0.00 35.87 3.14
567 616 4.944619 TCAATGTCTAGAATCTCCGCAT 57.055 40.909 0.00 0.00 0.00 4.73
568 617 4.100035 ACATCAATGTCTAGAATCTCCGCA 59.900 41.667 0.00 0.00 35.87 5.69
569 618 4.626042 ACATCAATGTCTAGAATCTCCGC 58.374 43.478 0.00 0.00 35.87 5.54
570 619 5.694006 GGAACATCAATGTCTAGAATCTCCG 59.306 44.000 0.00 0.00 40.80 4.63
571 620 6.586344 TGGAACATCAATGTCTAGAATCTCC 58.414 40.000 0.00 0.00 40.80 3.71
590 639 7.660112 TGCCACATATATTCAATTCATGGAAC 58.340 34.615 0.00 0.00 0.00 3.62
591 640 7.836479 TGCCACATATATTCAATTCATGGAA 57.164 32.000 0.00 0.00 0.00 3.53
592 641 9.703677 ATATGCCACATATATTCAATTCATGGA 57.296 29.630 0.00 0.00 0.00 3.41
593 642 9.744468 CATATGCCACATATATTCAATTCATGG 57.256 33.333 0.00 0.00 0.00 3.66
596 645 9.299465 ACACATATGCCACATATATTCAATTCA 57.701 29.630 1.58 0.00 0.00 2.57
601 650 9.964303 GAAAAACACATATGCCACATATATTCA 57.036 29.630 1.58 0.00 0.00 2.57
602 651 9.117145 CGAAAAACACATATGCCACATATATTC 57.883 33.333 1.58 0.00 0.00 1.75
603 652 8.629158 ACGAAAAACACATATGCCACATATATT 58.371 29.630 1.58 0.00 0.00 1.28
604 653 8.165239 ACGAAAAACACATATGCCACATATAT 57.835 30.769 1.58 0.00 0.00 0.86
605 654 7.281100 TGACGAAAAACACATATGCCACATATA 59.719 33.333 1.58 0.00 0.00 0.86
606 655 6.094742 TGACGAAAAACACATATGCCACATAT 59.905 34.615 1.58 0.00 0.00 1.78
607 656 5.412904 TGACGAAAAACACATATGCCACATA 59.587 36.000 1.58 0.00 0.00 2.29
608 657 4.217334 TGACGAAAAACACATATGCCACAT 59.783 37.500 1.58 0.00 0.00 3.21
609 658 3.565902 TGACGAAAAACACATATGCCACA 59.434 39.130 1.58 0.00 0.00 4.17
610 659 4.153958 TGACGAAAAACACATATGCCAC 57.846 40.909 1.58 0.00 0.00 5.01
611 660 3.818210 ACTGACGAAAAACACATATGCCA 59.182 39.130 1.58 0.00 0.00 4.92
612 661 4.419522 ACTGACGAAAAACACATATGCC 57.580 40.909 1.58 0.00 0.00 4.40
613 662 5.212194 ACAACTGACGAAAAACACATATGC 58.788 37.500 1.58 0.00 0.00 3.14
614 663 6.658831 AGACAACTGACGAAAAACACATATG 58.341 36.000 0.00 0.00 0.00 1.78
615 664 6.861065 AGACAACTGACGAAAAACACATAT 57.139 33.333 0.00 0.00 0.00 1.78
616 665 7.956420 ATAGACAACTGACGAAAAACACATA 57.044 32.000 0.00 0.00 0.00 2.29
617 666 6.861065 ATAGACAACTGACGAAAAACACAT 57.139 33.333 0.00 0.00 0.00 3.21
618 667 6.671614 AATAGACAACTGACGAAAAACACA 57.328 33.333 0.00 0.00 0.00 3.72
619 668 7.483691 ACAAAATAGACAACTGACGAAAAACAC 59.516 33.333 0.00 0.00 0.00 3.32
620 669 7.531716 ACAAAATAGACAACTGACGAAAAACA 58.468 30.769 0.00 0.00 0.00 2.83
621 670 7.964545 ACAAAATAGACAACTGACGAAAAAC 57.035 32.000 0.00 0.00 0.00 2.43
622 671 7.698970 GGAACAAAATAGACAACTGACGAAAAA 59.301 33.333 0.00 0.00 0.00 1.94
623 672 7.148222 TGGAACAAAATAGACAACTGACGAAAA 60.148 33.333 0.00 0.00 31.92 2.29
624 673 6.316640 TGGAACAAAATAGACAACTGACGAAA 59.683 34.615 0.00 0.00 31.92 3.46
625 674 5.818336 TGGAACAAAATAGACAACTGACGAA 59.182 36.000 0.00 0.00 31.92 3.85
626 675 5.361427 TGGAACAAAATAGACAACTGACGA 58.639 37.500 0.00 0.00 31.92 4.20
627 676 5.666969 TGGAACAAAATAGACAACTGACG 57.333 39.130 0.00 0.00 31.92 4.35
644 693 5.675444 GCACGAAAACGAACATATATGGAAC 59.325 40.000 16.96 6.79 0.00 3.62
645 694 5.583061 AGCACGAAAACGAACATATATGGAA 59.417 36.000 16.96 0.00 0.00 3.53
646 695 5.113383 AGCACGAAAACGAACATATATGGA 58.887 37.500 16.96 0.00 0.00 3.41
647 696 5.403897 AGCACGAAAACGAACATATATGG 57.596 39.130 16.96 2.09 0.00 2.74
648 697 7.801383 GTAAGCACGAAAACGAACATATATG 57.199 36.000 11.29 11.29 0.00 1.78
665 714 1.083015 CCGCAACACACGTAAGCAC 60.083 57.895 0.00 0.00 45.62 4.40
667 716 2.127383 GCCGCAACACACGTAAGC 60.127 61.111 0.00 0.00 45.62 3.09
669 718 1.167155 ATTGGCCGCAACACACGTAA 61.167 50.000 0.00 0.00 0.00 3.18
670 719 1.598407 ATTGGCCGCAACACACGTA 60.598 52.632 0.00 0.00 0.00 3.57
671 720 2.904866 ATTGGCCGCAACACACGT 60.905 55.556 0.00 0.00 0.00 4.49
672 721 2.428902 CATTGGCCGCAACACACG 60.429 61.111 0.00 0.00 0.00 4.49
673 722 0.312416 TAACATTGGCCGCAACACAC 59.688 50.000 0.00 0.00 0.00 3.82
675 724 1.414378 GTTAACATTGGCCGCAACAC 58.586 50.000 0.00 0.00 0.00 3.32
677 726 0.601057 AGGTTAACATTGGCCGCAAC 59.399 50.000 8.10 0.00 0.00 4.17
678 727 0.885196 GAGGTTAACATTGGCCGCAA 59.115 50.000 8.10 0.00 0.00 4.85
679 728 0.037590 AGAGGTTAACATTGGCCGCA 59.962 50.000 8.10 0.00 0.00 5.69
680 729 1.173913 AAGAGGTTAACATTGGCCGC 58.826 50.000 8.10 0.00 0.00 6.53
681 730 5.339990 CAAATAAGAGGTTAACATTGGCCG 58.660 41.667 8.10 0.00 0.00 6.13
682 731 5.109210 GCAAATAAGAGGTTAACATTGGCC 58.891 41.667 8.10 0.00 0.00 5.36
683 732 4.798387 CGCAAATAAGAGGTTAACATTGGC 59.202 41.667 8.10 6.44 0.00 4.52
684 733 6.027749 GTCGCAAATAAGAGGTTAACATTGG 58.972 40.000 8.10 0.00 0.00 3.16
686 735 5.708230 TGGTCGCAAATAAGAGGTTAACATT 59.292 36.000 8.10 1.82 0.00 2.71
697 751 6.128282 ACAAATCTACAGTGGTCGCAAATAAG 60.128 38.462 0.00 0.00 0.00 1.73
706 760 2.806244 ACGCAACAAATCTACAGTGGTC 59.194 45.455 0.00 0.00 0.00 4.02
709 763 3.181520 GGCTACGCAACAAATCTACAGTG 60.182 47.826 0.00 0.00 0.00 3.66
711 765 3.000041 TGGCTACGCAACAAATCTACAG 59.000 45.455 0.00 0.00 0.00 2.74
726 780 6.435428 CGACCCACAAAATTTATATGGCTAC 58.565 40.000 8.96 3.71 0.00 3.58
809 1583 3.491652 GCTTCGGAACTCAGGCGC 61.492 66.667 0.00 0.00 0.00 6.53
903 1700 1.071471 GGCGATCGGGATGATGGTT 59.929 57.895 18.30 0.00 37.47 3.67
941 1740 0.994247 TGGTCTGCTGGATCATGGTT 59.006 50.000 0.00 0.00 28.77 3.67
956 1755 2.665603 GGAGGTGAGGTGCTGGTC 59.334 66.667 0.00 0.00 0.00 4.02
957 1756 2.930562 GGGAGGTGAGGTGCTGGT 60.931 66.667 0.00 0.00 0.00 4.00
958 1757 3.721706 GGGGAGGTGAGGTGCTGG 61.722 72.222 0.00 0.00 0.00 4.85
989 1788 1.329906 GCCTCAGCATCTTCGTTGATG 59.670 52.381 13.29 13.29 44.72 3.07
990 1789 1.065926 TGCCTCAGCATCTTCGTTGAT 60.066 47.619 0.00 0.00 46.52 2.57
991 1790 0.321346 TGCCTCAGCATCTTCGTTGA 59.679 50.000 0.00 0.00 46.52 3.18
992 1791 2.845019 TGCCTCAGCATCTTCGTTG 58.155 52.632 0.00 0.00 46.52 4.10
1040 1845 4.416848 AGAGTGCCATGTAAATAGGGGAAT 59.583 41.667 0.00 0.00 0.00 3.01
1063 1874 4.056125 CTGTCTGGTGAGGCGCGA 62.056 66.667 12.10 0.00 0.00 5.87
1077 1888 3.034635 AGGAAGACGATGGCTATTCTGT 58.965 45.455 0.00 0.00 0.00 3.41
1087 1898 0.526524 GACGCAGGAGGAAGACGATG 60.527 60.000 0.00 0.00 0.00 3.84
1088 1899 1.668101 GGACGCAGGAGGAAGACGAT 61.668 60.000 0.00 0.00 0.00 3.73
1090 1901 2.182030 GGACGCAGGAGGAAGACG 59.818 66.667 0.00 0.00 0.00 4.18
1091 1902 1.079750 GTGGACGCAGGAGGAAGAC 60.080 63.158 0.00 0.00 0.00 3.01
1092 1903 1.118965 TTGTGGACGCAGGAGGAAGA 61.119 55.000 0.00 0.00 0.00 2.87
1093 1904 0.250295 TTTGTGGACGCAGGAGGAAG 60.250 55.000 0.00 0.00 0.00 3.46
1094 1905 0.250295 CTTTGTGGACGCAGGAGGAA 60.250 55.000 0.00 0.00 0.00 3.36
1095 1906 1.118965 TCTTTGTGGACGCAGGAGGA 61.119 55.000 0.00 0.00 0.00 3.71
1096 1907 0.951040 GTCTTTGTGGACGCAGGAGG 60.951 60.000 0.00 0.00 0.00 4.30
1097 1908 0.951040 GGTCTTTGTGGACGCAGGAG 60.951 60.000 0.00 0.00 37.12 3.69
1098 1909 1.070786 GGTCTTTGTGGACGCAGGA 59.929 57.895 0.00 0.00 37.12 3.86
1099 1910 1.227823 TGGTCTTTGTGGACGCAGG 60.228 57.895 0.00 0.00 37.12 4.85
1100 1911 1.845809 GCTGGTCTTTGTGGACGCAG 61.846 60.000 0.00 0.00 37.46 5.18
1101 1912 1.891919 GCTGGTCTTTGTGGACGCA 60.892 57.895 0.00 0.00 37.12 5.24
1102 1913 1.569479 GAGCTGGTCTTTGTGGACGC 61.569 60.000 0.00 0.00 37.12 5.19
1103 1914 0.034059 AGAGCTGGTCTTTGTGGACG 59.966 55.000 3.02 0.00 37.12 4.79
1104 1915 2.563179 TCTAGAGCTGGTCTTTGTGGAC 59.437 50.000 15.26 0.00 36.64 4.02
1105 1916 2.889512 TCTAGAGCTGGTCTTTGTGGA 58.110 47.619 15.26 3.89 36.64 4.02
1106 1917 3.007398 ACTTCTAGAGCTGGTCTTTGTGG 59.993 47.826 15.26 5.12 36.64 4.17
1107 1918 4.264460 ACTTCTAGAGCTGGTCTTTGTG 57.736 45.455 15.26 6.42 36.64 3.33
1108 1919 5.047660 CACTACTTCTAGAGCTGGTCTTTGT 60.048 44.000 15.26 10.77 36.64 2.83
1109 1920 5.406649 CACTACTTCTAGAGCTGGTCTTTG 58.593 45.833 15.26 8.69 36.64 2.77
1116 1974 3.375610 TCTTCGCACTACTTCTAGAGCTG 59.624 47.826 0.00 0.00 35.15 4.24
1134 2000 3.307129 GGAAGAGGAGAGGTTTGGTCTTC 60.307 52.174 0.00 0.00 39.36 2.87
1191 2063 1.476833 GCTGGTGGGAACAAGAAGACA 60.477 52.381 0.00 0.00 46.06 3.41
1269 2190 0.839946 ACAGCACCTTCTTCACCACT 59.160 50.000 0.00 0.00 0.00 4.00
1359 2280 6.317663 TGATGGGAAATTCAGATTGAGAGA 57.682 37.500 0.00 0.00 0.00 3.10
1366 2331 5.138276 CACCTCATGATGGGAAATTCAGAT 58.862 41.667 7.95 0.00 0.00 2.90
1377 2342 3.945434 GCGCGCACCTCATGATGG 61.945 66.667 29.10 2.61 0.00 3.51
1388 2353 4.961511 AAGAGGTCAACGCGCGCA 62.962 61.111 32.58 11.75 0.00 6.09
1391 2356 0.944311 TCAAGAAGAGGTCAACGCGC 60.944 55.000 5.73 0.00 0.00 6.86
1557 2535 7.721399 AGCAGAAAAAGTTGGAAGAATTAGAGA 59.279 33.333 0.00 0.00 0.00 3.10
1562 2540 5.363580 TGGAGCAGAAAAAGTTGGAAGAATT 59.636 36.000 0.00 0.00 0.00 2.17
1563 2547 4.895297 TGGAGCAGAAAAAGTTGGAAGAAT 59.105 37.500 0.00 0.00 0.00 2.40
1572 2587 2.808543 GACACGATGGAGCAGAAAAAGT 59.191 45.455 0.00 0.00 0.00 2.66
1623 2654 3.748107 CGTCAGAAACGTAGAACACAC 57.252 47.619 0.00 0.00 46.42 3.82
1652 2687 1.372501 AGTCCTGGTGGGTAAATGCT 58.627 50.000 0.00 0.00 36.25 3.79
1655 2690 2.236395 CGAGAAGTCCTGGTGGGTAAAT 59.764 50.000 0.00 0.00 36.25 1.40
1658 2693 0.613853 CCGAGAAGTCCTGGTGGGTA 60.614 60.000 0.00 0.00 36.25 3.69
1751 2787 0.251698 TGAATGGGCCAAGTGCATGA 60.252 50.000 11.89 0.00 43.89 3.07
1789 2839 3.365820 CGAGCATTCAGGTTGCAATTTTC 59.634 43.478 0.59 0.00 42.62 2.29
1792 2842 1.203052 CCGAGCATTCAGGTTGCAATT 59.797 47.619 0.59 0.00 42.62 2.32
1868 2919 2.203084 TTCTGCACGCCGTTGGAA 60.203 55.556 0.00 0.00 0.00 3.53
2041 3096 2.346803 TCCTAGCATTGTTCGAGCAAC 58.653 47.619 17.30 5.70 35.28 4.17
2222 3296 0.321653 GGATCGGTTGGTGAAGCTGT 60.322 55.000 0.00 0.00 0.00 4.40
2242 3316 2.781595 GAAAGCGTTCCAGCCCTCGA 62.782 60.000 0.30 0.00 38.01 4.04
2381 3455 3.289834 AGCACAAACCGCAGCAGG 61.290 61.111 0.00 0.00 37.30 4.85
2501 3575 3.354499 CTTCTCGAAGCCGTTGCGC 62.354 63.158 0.00 0.00 44.33 6.09
2577 3651 0.873721 CATGACGTTGCACCATGACA 59.126 50.000 8.13 0.00 39.86 3.58
2589 3663 1.358152 TTCCCTTTCCTCCATGACGT 58.642 50.000 0.00 0.00 0.00 4.34
2594 3668 5.536497 AATGTAGTTTCCCTTTCCTCCAT 57.464 39.130 0.00 0.00 0.00 3.41
2709 3806 4.955925 TCGATCACACAGTTTTGTTGTT 57.044 36.364 0.00 0.00 34.62 2.83
2714 3811 3.996363 TCCTCATCGATCACACAGTTTTG 59.004 43.478 0.00 0.00 0.00 2.44
2719 3816 2.027385 TCCTCCTCATCGATCACACAG 58.973 52.381 0.00 0.00 0.00 3.66
2725 3822 6.636562 TTACTAACTTCCTCCTCATCGATC 57.363 41.667 0.00 0.00 0.00 3.69
2726 3823 6.778069 TCATTACTAACTTCCTCCTCATCGAT 59.222 38.462 0.00 0.00 0.00 3.59
2727 3824 6.127101 TCATTACTAACTTCCTCCTCATCGA 58.873 40.000 0.00 0.00 0.00 3.59
2728 3825 6.392625 TCATTACTAACTTCCTCCTCATCG 57.607 41.667 0.00 0.00 0.00 3.84
2754 3851 6.913170 ACAATTCGTTTTGCTATTGTGAGAT 58.087 32.000 0.00 0.00 39.15 2.75
2756 3853 6.991485 AACAATTCGTTTTGCTATTGTGAG 57.009 33.333 0.00 0.00 40.14 3.51
2760 3857 8.113062 TGAAACAAACAATTCGTTTTGCTATTG 58.887 29.630 4.05 0.00 45.79 1.90
2761 3858 8.190888 TGAAACAAACAATTCGTTTTGCTATT 57.809 26.923 4.05 0.00 45.79 1.73
2775 3872 6.426328 GCCCAAACATATGATGAAACAAACAA 59.574 34.615 10.38 0.00 0.00 2.83
2776 3873 5.931146 GCCCAAACATATGATGAAACAAACA 59.069 36.000 10.38 0.00 0.00 2.83
2777 3874 5.931146 TGCCCAAACATATGATGAAACAAAC 59.069 36.000 10.38 0.00 0.00 2.93
2778 3875 6.106648 TGCCCAAACATATGATGAAACAAA 57.893 33.333 10.38 0.00 0.00 2.83
2894 3993 3.382048 TCCTCGCATCATGAGAGAATG 57.618 47.619 19.20 3.63 45.38 2.67
2906 4005 0.035036 CAGCCTCATGATCCTCGCAT 59.965 55.000 0.00 0.00 0.00 4.73
2910 4009 1.140452 TGCTTCAGCCTCATGATCCTC 59.860 52.381 0.00 0.00 41.18 3.71
2911 4010 1.141254 CTGCTTCAGCCTCATGATCCT 59.859 52.381 0.00 0.00 41.18 3.24
2915 4017 0.540454 CTCCTGCTTCAGCCTCATGA 59.460 55.000 0.00 0.00 41.18 3.07
2921 4023 2.250741 GAGGGTCTCCTGCTTCAGCC 62.251 65.000 0.00 0.00 45.05 4.85
2922 4024 1.220477 GAGGGTCTCCTGCTTCAGC 59.780 63.158 0.00 0.00 45.05 4.26
2923 4025 0.979665 TTGAGGGTCTCCTGCTTCAG 59.020 55.000 0.00 0.00 45.05 3.02
2933 4035 2.290577 GGCAGTCTTCAATTGAGGGTCT 60.291 50.000 16.67 12.41 0.00 3.85
2934 4036 2.087646 GGCAGTCTTCAATTGAGGGTC 58.912 52.381 16.67 10.60 0.00 4.46
2935 4037 1.611673 CGGCAGTCTTCAATTGAGGGT 60.612 52.381 16.67 3.02 0.00 4.34
2936 4038 1.089920 CGGCAGTCTTCAATTGAGGG 58.910 55.000 16.67 10.25 0.00 4.30
2937 4039 2.005451 CTCGGCAGTCTTCAATTGAGG 58.995 52.381 11.18 11.18 0.00 3.86
2938 4040 1.396301 GCTCGGCAGTCTTCAATTGAG 59.604 52.381 8.41 3.62 0.00 3.02
2939 4041 1.002430 AGCTCGGCAGTCTTCAATTGA 59.998 47.619 3.38 3.38 0.00 2.57
2940 4042 1.396301 GAGCTCGGCAGTCTTCAATTG 59.604 52.381 0.00 0.00 0.00 2.32
2941 4043 1.277557 AGAGCTCGGCAGTCTTCAATT 59.722 47.619 8.37 0.00 0.00 2.32
2942 4044 0.901124 AGAGCTCGGCAGTCTTCAAT 59.099 50.000 8.37 0.00 0.00 2.57
2943 4045 0.037882 CAGAGCTCGGCAGTCTTCAA 60.038 55.000 8.37 0.00 0.00 2.69
2944 4046 0.895559 TCAGAGCTCGGCAGTCTTCA 60.896 55.000 9.22 0.00 0.00 3.02
2945 4047 0.457681 GTCAGAGCTCGGCAGTCTTC 60.458 60.000 9.22 0.00 0.00 2.87
2946 4048 1.589113 GTCAGAGCTCGGCAGTCTT 59.411 57.895 9.22 0.00 0.00 3.01
2947 4049 2.695759 CGTCAGAGCTCGGCAGTCT 61.696 63.158 9.22 0.00 0.00 3.24
2948 4050 2.202544 CGTCAGAGCTCGGCAGTC 60.203 66.667 9.22 0.00 0.00 3.51
2949 4051 2.986413 ACGTCAGAGCTCGGCAGT 60.986 61.111 9.22 8.43 0.00 4.40
2950 4052 2.505777 CACGTCAGAGCTCGGCAG 60.506 66.667 9.22 7.80 0.00 4.85
2951 4053 3.295273 ACACGTCAGAGCTCGGCA 61.295 61.111 9.22 0.00 0.00 5.69
2952 4054 2.807045 CACACGTCAGAGCTCGGC 60.807 66.667 9.22 4.58 0.00 5.54
2953 4055 2.126307 CCACACGTCAGAGCTCGG 60.126 66.667 8.37 7.99 0.00 4.63
2954 4056 1.442857 GTCCACACGTCAGAGCTCG 60.443 63.158 8.37 3.55 0.00 5.03
2955 4057 0.387878 CAGTCCACACGTCAGAGCTC 60.388 60.000 5.27 5.27 0.00 4.09
2956 4058 1.662608 CAGTCCACACGTCAGAGCT 59.337 57.895 0.00 0.00 0.00 4.09
2957 4059 2.024319 GCAGTCCACACGTCAGAGC 61.024 63.158 0.00 0.00 0.00 4.09
2958 4060 0.249447 TTGCAGTCCACACGTCAGAG 60.249 55.000 0.00 0.00 0.00 3.35
2959 4061 0.176910 TTTGCAGTCCACACGTCAGA 59.823 50.000 0.00 0.00 0.00 3.27
2960 4062 0.583438 CTTTGCAGTCCACACGTCAG 59.417 55.000 0.00 0.00 0.00 3.51
2961 4063 1.436195 GCTTTGCAGTCCACACGTCA 61.436 55.000 0.00 0.00 0.00 4.35
2962 4064 1.160329 AGCTTTGCAGTCCACACGTC 61.160 55.000 0.00 0.00 0.00 4.34
2963 4065 0.105964 TAGCTTTGCAGTCCACACGT 59.894 50.000 0.00 0.00 0.00 4.49
2964 4066 1.442769 ATAGCTTTGCAGTCCACACG 58.557 50.000 0.00 0.00 0.00 4.49
2965 4067 2.669391 GCAATAGCTTTGCAGTCCACAC 60.669 50.000 21.23 0.00 44.34 3.82
2966 4068 1.541147 GCAATAGCTTTGCAGTCCACA 59.459 47.619 21.23 0.00 44.34 4.17
2967 4069 2.268730 GCAATAGCTTTGCAGTCCAC 57.731 50.000 21.23 0.00 44.34 4.02
2974 4076 4.746611 AGTTTTCAAGTGCAATAGCTTTGC 59.253 37.500 20.06 20.06 45.11 3.68
2975 4077 6.206600 CAGTTTTCAAGTGCAATAGCTTTG 57.793 37.500 0.00 0.00 42.74 2.77
2986 4088 1.873591 AGTAGCCGCAGTTTTCAAGTG 59.126 47.619 0.00 0.00 34.90 3.16
2987 4089 2.256117 AGTAGCCGCAGTTTTCAAGT 57.744 45.000 0.00 0.00 0.00 3.16
2988 4090 3.125316 CCTTAGTAGCCGCAGTTTTCAAG 59.875 47.826 0.00 0.00 0.00 3.02
2989 4091 3.071479 CCTTAGTAGCCGCAGTTTTCAA 58.929 45.455 0.00 0.00 0.00 2.69
2990 4092 2.695359 CCTTAGTAGCCGCAGTTTTCA 58.305 47.619 0.00 0.00 0.00 2.69
2991 4093 1.397343 GCCTTAGTAGCCGCAGTTTTC 59.603 52.381 0.00 0.00 0.00 2.29
2992 4094 1.450025 GCCTTAGTAGCCGCAGTTTT 58.550 50.000 0.00 0.00 0.00 2.43
2993 4095 0.392595 GGCCTTAGTAGCCGCAGTTT 60.393 55.000 0.00 0.00 41.41 2.66
2994 4096 1.221021 GGCCTTAGTAGCCGCAGTT 59.779 57.895 0.00 0.00 41.41 3.16
2995 4097 2.901042 GGCCTTAGTAGCCGCAGT 59.099 61.111 0.00 0.00 41.41 4.40
3001 4103 1.389555 ATTTTGGCGGCCTTAGTAGC 58.610 50.000 21.46 0.00 0.00 3.58
3002 4104 3.486875 CGAAATTTTGGCGGCCTTAGTAG 60.487 47.826 21.46 1.28 0.00 2.57
3003 4105 2.420722 CGAAATTTTGGCGGCCTTAGTA 59.579 45.455 21.46 0.00 0.00 1.82
3004 4106 1.201414 CGAAATTTTGGCGGCCTTAGT 59.799 47.619 21.46 1.78 0.00 2.24
3005 4107 1.201414 ACGAAATTTTGGCGGCCTTAG 59.799 47.619 21.46 8.43 0.00 2.18
3006 4108 1.068194 CACGAAATTTTGGCGGCCTTA 60.068 47.619 21.46 5.38 0.00 2.69
3007 4109 0.319469 CACGAAATTTTGGCGGCCTT 60.319 50.000 21.46 5.25 0.00 4.35
3008 4110 1.288752 CACGAAATTTTGGCGGCCT 59.711 52.632 21.46 0.00 0.00 5.19
3009 4111 0.598942 AACACGAAATTTTGGCGGCC 60.599 50.000 13.32 13.32 0.00 6.13
3010 4112 1.213491 AAACACGAAATTTTGGCGGC 58.787 45.000 10.22 0.00 0.00 6.53
3011 4113 2.860735 TCAAAACACGAAATTTTGGCGG 59.139 40.909 10.22 2.08 43.94 6.13
3012 4114 3.844540 GTCAAAACACGAAATTTTGGCG 58.155 40.909 10.22 3.47 43.94 5.69
3013 4115 3.001838 GGGTCAAAACACGAAATTTTGGC 59.998 43.478 10.22 16.17 46.25 4.52
3014 4116 4.438148 AGGGTCAAAACACGAAATTTTGG 58.562 39.130 10.22 2.00 43.94 3.28
3046 4148 2.438021 CCGGGGTCAGATCCTGAATTTA 59.562 50.000 10.57 0.00 42.46 1.40
3301 4408 4.360405 GAAAAGGCAGGGCGGGGA 62.360 66.667 0.00 0.00 0.00 4.81
3305 4414 2.343426 GGGAAGAAAAGGCAGGGCG 61.343 63.158 0.00 0.00 0.00 6.13
3306 4415 1.228862 TGGGAAGAAAAGGCAGGGC 60.229 57.895 0.00 0.00 0.00 5.19
3328 4437 3.393970 CCAGCGAGAGAGGGGCAA 61.394 66.667 0.00 0.00 0.00 4.52
3337 4447 1.188219 AAGAGGAACTGCCAGCGAGA 61.188 55.000 0.00 0.00 41.55 4.04
3402 4520 0.323629 AAACGGCGAAGATCCAAGGA 59.676 50.000 16.62 0.00 0.00 3.36
3415 4533 3.596562 CGTAAAAACGATGAAGAAACGGC 59.403 43.478 0.00 0.00 34.64 5.68
3435 4554 2.123251 AGGGCCATCTCGATCCGT 60.123 61.111 6.18 0.00 0.00 4.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.