Multiple sequence alignment - TraesCS5B01G534600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G534600 chr5B 100.000 5199 0 0 1 5199 690905301 690910499 0.000000e+00 9601.0
1 TraesCS5B01G534600 chr5B 93.023 43 3 0 279 321 558253364 558253406 4.350000e-06 63.9
2 TraesCS5B01G534600 chr4A 91.597 2523 171 23 1964 4453 621566293 621563779 0.000000e+00 3446.0
3 TraesCS5B01G534600 chr4A 89.644 898 52 21 1023 1888 621567496 621566608 0.000000e+00 1105.0
4 TraesCS5B01G534600 chr4A 87.500 632 64 12 2880 3499 24765543 24764915 0.000000e+00 715.0
5 TraesCS5B01G534600 chr4A 88.814 447 43 4 4581 5020 621563655 621563209 4.580000e-150 542.0
6 TraesCS5B01G534600 chr4A 85.057 522 56 14 1071 1581 24768062 24767552 3.590000e-141 512.0
7 TraesCS5B01G534600 chr4A 80.986 426 28 14 502 922 621568000 621567623 6.590000e-74 289.0
8 TraesCS5B01G534600 chr4A 84.483 290 43 2 1624 1912 24767429 24767141 8.520000e-73 285.0
9 TraesCS5B01G534600 chr4A 92.593 162 10 2 5040 5199 621563222 621563061 1.130000e-56 231.0
10 TraesCS5B01G534600 chr4A 85.340 191 28 0 4022 4212 24764450 24764260 1.140000e-46 198.0
11 TraesCS5B01G534600 chr4A 75.909 440 67 26 1974 2405 24766338 24765930 6.870000e-44 189.0
12 TraesCS5B01G534600 chrUn 91.671 1765 92 14 2717 4454 68496684 68494948 0.000000e+00 2394.0
13 TraesCS5B01G534600 chrUn 90.428 888 55 19 1023 1888 68509236 68508357 0.000000e+00 1142.0
14 TraesCS5B01G534600 chrUn 89.189 629 58 6 4581 5199 68494234 68493606 0.000000e+00 776.0
15 TraesCS5B01G534600 chrUn 82.615 650 89 10 23 649 68510544 68509896 2.120000e-153 553.0
16 TraesCS5B01G534600 chrUn 88.889 369 32 5 4581 4940 68494832 68494464 3.690000e-121 446.0
17 TraesCS5B01G534600 chrUn 85.204 392 39 9 2289 2675 68497064 68496687 8.170000e-103 385.0
18 TraesCS5B01G534600 chrUn 87.847 288 19 5 635 922 68509626 68509355 1.810000e-84 324.0
19 TraesCS5B01G534600 chrUn 84.548 343 34 9 1959 2291 68508207 68507874 6.490000e-84 322.0
20 TraesCS5B01G534600 chrUn 84.615 182 25 1 964 1145 68522397 68522219 1.490000e-40 178.0
21 TraesCS5B01G534600 chrUn 93.162 117 8 0 4338 4454 68494466 68494350 6.920000e-39 172.0
22 TraesCS5B01G534600 chr5D 91.671 1765 92 14 2717 4454 547608775 547607039 0.000000e+00 2394.0
23 TraesCS5B01G534600 chr5D 90.541 888 54 19 1023 1888 547610706 547609827 0.000000e+00 1147.0
24 TraesCS5B01G534600 chr5D 88.748 631 59 6 4581 5199 547606923 547606293 0.000000e+00 761.0
25 TraesCS5B01G534600 chr5D 84.563 732 75 17 1959 2675 547609486 547608778 0.000000e+00 691.0
26 TraesCS5B01G534600 chr5D 81.567 651 95 10 23 649 547612028 547611379 9.980000e-142 514.0
27 TraesCS5B01G534600 chr5D 86.505 289 22 6 635 922 547611097 547610825 8.460000e-78 302.0
28 TraesCS5B01G534600 chr5D 86.264 182 25 0 964 1145 547615950 547615769 1.140000e-46 198.0
29 TraesCS5B01G534600 chr5D 95.349 43 2 0 591 633 205561641 205561683 9.340000e-08 69.4
30 TraesCS5B01G534600 chr4D 88.262 673 70 9 2835 3501 442897547 442898216 0.000000e+00 797.0
31 TraesCS5B01G534600 chr4D 84.470 528 57 18 1068 1585 442895147 442895659 1.010000e-136 497.0
32 TraesCS5B01G534600 chr4D 86.063 287 40 0 1626 1912 442895775 442896061 5.060000e-80 309.0
33 TraesCS5B01G534600 chr4D 86.034 179 25 0 4022 4200 442898684 442898862 5.310000e-45 193.0
34 TraesCS5B01G534600 chr4D 95.000 40 2 0 279 318 194219019 194218980 4.350000e-06 63.9
35 TraesCS5B01G534600 chr4B 87.910 670 73 8 2835 3499 552016607 552017273 0.000000e+00 782.0
36 TraesCS5B01G534600 chr4B 86.089 496 44 17 1096 1581 552014241 552014721 1.290000e-140 510.0
37 TraesCS5B01G534600 chr4B 84.838 277 42 0 1626 1902 552014844 552015120 3.960000e-71 279.0
38 TraesCS5B01G534600 chr4B 85.475 179 26 0 4022 4200 552017694 552017872 2.470000e-43 187.0
39 TraesCS5B01G534600 chr7D 98.113 212 4 0 1370 1581 180440130 180440341 2.290000e-98 370.0
40 TraesCS5B01G534600 chr7D 89.362 47 5 0 590 636 379307179 379307133 5.620000e-05 60.2
41 TraesCS5B01G534600 chr3A 96.226 212 8 0 1370 1581 703853064 703852853 1.070000e-91 348.0
42 TraesCS5B01G534600 chr3A 87.755 49 2 2 1247 1295 703853689 703853645 3.000000e-03 54.7
43 TraesCS5B01G534600 chr6D 95.755 212 9 0 1370 1581 150886171 150885960 4.990000e-90 342.0
44 TraesCS5B01G534600 chr6D 95.122 41 2 0 280 320 197851840 197851880 1.210000e-06 65.8
45 TraesCS5B01G534600 chr6D 95.000 40 2 0 279 318 341299457 341299418 4.350000e-06 63.9
46 TraesCS5B01G534600 chr6D 89.362 47 1 2 1247 1293 150886796 150886754 7.270000e-04 56.5
47 TraesCS5B01G534600 chr7B 86.301 73 10 0 561 633 700723220 700723292 4.320000e-11 80.5
48 TraesCS5B01G534600 chr7B 95.000 40 2 0 276 315 642584423 642584462 4.350000e-06 63.9
49 TraesCS5B01G534600 chr6B 95.238 42 2 0 276 317 300626795 300626836 3.360000e-07 67.6
50 TraesCS5B01G534600 chr2B 95.349 43 1 1 279 321 404267392 404267351 3.360000e-07 67.6
51 TraesCS5B01G534600 chr3D 100.000 31 0 0 1265 1295 86081510 86081480 2.020000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G534600 chr5B 690905301 690910499 5198 False 9601.000000 9601 100.000000 1 5199 1 chr5B.!!$F2 5198
1 TraesCS5B01G534600 chr4A 621563061 621568000 4939 True 1122.600000 3446 88.726800 502 5199 5 chr4A.!!$R2 4697
2 TraesCS5B01G534600 chr4A 24764260 24768062 3802 True 379.800000 715 83.657800 1071 4212 5 chr4A.!!$R1 3141
3 TraesCS5B01G534600 chrUn 68493606 68497064 3458 True 834.600000 2394 89.623000 2289 5199 5 chrUn.!!$R2 2910
4 TraesCS5B01G534600 chrUn 68507874 68510544 2670 True 585.250000 1142 86.359500 23 2291 4 chrUn.!!$R3 2268
5 TraesCS5B01G534600 chr5D 547606293 547615950 9657 True 858.142857 2394 87.122714 23 5199 7 chr5D.!!$R1 5176
6 TraesCS5B01G534600 chr4D 442895147 442898862 3715 False 449.000000 797 86.207250 1068 4200 4 chr4D.!!$F1 3132
7 TraesCS5B01G534600 chr4B 552014241 552017872 3631 False 439.500000 782 86.078000 1096 4200 4 chr4B.!!$F1 3104
8 TraesCS5B01G534600 chr3A 703852853 703853689 836 True 201.350000 348 91.990500 1247 1581 2 chr3A.!!$R1 334

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
865 5096 0.105964 TTGGACGACTCCTTGTGGTG 59.894 55.0 0.00 0.0 37.74 4.17 F
1009 5293 0.391130 TCTCCTTTCAATGGCCGACG 60.391 55.0 0.00 0.0 0.00 5.12 F
1706 6620 0.616371 TTACCGGCATTACCTGTGCT 59.384 50.0 0.00 0.0 42.16 4.40 F
1841 6755 0.407139 AGCTTGCCACAAGGGAGATT 59.593 50.0 9.23 0.0 40.01 2.40 F
3665 9581 0.323451 CTTGGGGGTAAAGGCAGACC 60.323 60.0 0.00 0.0 34.75 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1758 6672 0.249398 ACCACCTGATCAGTTACCGC 59.751 55.000 21.11 0.0 0.00 5.68 R
1817 6731 0.600057 CCCTTGTGGCAAGCTTCTTC 59.400 55.000 0.00 0.0 0.00 2.87 R
3653 9569 2.814336 CTCAGGTTTGGTCTGCCTTTAC 59.186 50.000 0.00 0.0 35.27 2.01 R
3713 9641 6.155910 TGAGAAGTTCAATCTCAGGCTAGAAT 59.844 38.462 5.50 0.0 46.23 2.40 R
4898 11547 0.943673 TGACATGCAACACGGTTCTG 59.056 50.000 0.00 0.0 0.00 3.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
51 3952 6.764308 AGTTATTCATTGTATGCTGCTGTT 57.236 33.333 0.00 0.00 0.00 3.16
52 3953 6.789262 AGTTATTCATTGTATGCTGCTGTTC 58.211 36.000 0.00 0.00 0.00 3.18
53 3954 6.600822 AGTTATTCATTGTATGCTGCTGTTCT 59.399 34.615 0.00 0.00 0.00 3.01
56 3957 5.801350 TCATTGTATGCTGCTGTTCTTAC 57.199 39.130 0.00 0.00 0.00 2.34
62 3963 9.613428 ATTGTATGCTGCTGTTCTTACTTAATA 57.387 29.630 0.00 0.00 0.00 0.98
63 3964 9.613428 TTGTATGCTGCTGTTCTTACTTAATAT 57.387 29.630 0.00 0.00 0.00 1.28
87 3988 6.187125 AGATAATGTGCTGATGTGTTGTTC 57.813 37.500 0.00 0.00 0.00 3.18
102 4003 3.515502 TGTTGTTCATTTTGGGACCAACA 59.484 39.130 2.68 0.00 35.46 3.33
114 4015 2.039348 GGGACCAACAGCCTACAAGTAA 59.961 50.000 0.00 0.00 0.00 2.24
119 4020 3.551551 CAACAGCCTACAAGTAAAACGC 58.448 45.455 0.00 0.00 0.00 4.84
125 4026 4.630069 AGCCTACAAGTAAAACGCACTATG 59.370 41.667 0.00 0.00 0.00 2.23
207 4111 6.106673 ACTATCTTCAACTGTGGAAATACCG 58.893 40.000 0.00 0.00 42.61 4.02
217 4121 2.925563 GTGGAAATACCGACTACAACCG 59.074 50.000 0.00 0.00 42.61 4.44
219 4123 3.448301 TGGAAATACCGACTACAACCGAT 59.552 43.478 0.00 0.00 42.61 4.18
237 4141 0.749649 ATTGCGCAAAGACCAACCAA 59.250 45.000 28.81 0.00 0.00 3.67
241 4145 1.737363 GCGCAAAGACCAACCAAAACA 60.737 47.619 0.30 0.00 0.00 2.83
246 4150 5.391416 CGCAAAGACCAACCAAAACAAAAAT 60.391 36.000 0.00 0.00 0.00 1.82
247 4151 6.385843 GCAAAGACCAACCAAAACAAAAATT 58.614 32.000 0.00 0.00 0.00 1.82
250 4154 7.751768 AAGACCAACCAAAACAAAAATTCAA 57.248 28.000 0.00 0.00 0.00 2.69
251 4155 7.376435 AGACCAACCAAAACAAAAATTCAAG 57.624 32.000 0.00 0.00 0.00 3.02
254 4158 6.028987 CCAACCAAAACAAAAATTCAAGCAG 58.971 36.000 0.00 0.00 0.00 4.24
285 4189 7.649533 TTGTTCATGCTCCTTGATTCATAAT 57.350 32.000 0.00 0.00 0.00 1.28
312 4216 9.516546 TTATAGATACATTGGAGACGTATCACT 57.483 33.333 12.92 0.00 42.52 3.41
330 4234 4.736896 GACCCACTCCCGCACGAC 62.737 72.222 0.00 0.00 0.00 4.34
361 4265 1.001268 CCGTATGTCTCCATGACTCCG 60.001 57.143 0.00 0.00 45.54 4.63
379 4283 1.367840 GGACGCTTCCACTCACTGT 59.632 57.895 3.96 0.00 42.30 3.55
393 4297 0.108615 CACTGTCAAGTAGGCCCTCG 60.109 60.000 0.00 0.00 33.79 4.63
394 4298 1.258445 ACTGTCAAGTAGGCCCTCGG 61.258 60.000 0.00 0.00 33.79 4.63
419 4323 4.262506 GGTAGGTAGGCATTGACTATGACC 60.263 50.000 1.78 7.05 43.93 4.02
469 4373 4.135153 CGAGGCGGACACAGAGGG 62.135 72.222 0.00 0.00 0.00 4.30
500 4404 1.226323 GTCGATCTCGTGTCCGTGG 60.226 63.158 0.00 0.00 40.80 4.94
501 4405 1.673337 TCGATCTCGTGTCCGTGGT 60.673 57.895 0.00 0.00 40.80 4.16
502 4406 1.211969 CGATCTCGTGTCCGTGGTT 59.788 57.895 0.00 0.00 35.01 3.67
503 4407 0.388134 CGATCTCGTGTCCGTGGTTT 60.388 55.000 0.00 0.00 35.01 3.27
504 4408 1.068474 GATCTCGTGTCCGTGGTTTG 58.932 55.000 0.00 0.00 35.01 2.93
506 4410 1.959226 CTCGTGTCCGTGGTTTGGG 60.959 63.158 0.00 0.00 35.01 4.12
507 4411 3.656045 CGTGTCCGTGGTTTGGGC 61.656 66.667 0.00 0.00 0.00 5.36
508 4412 2.203294 GTGTCCGTGGTTTGGGCT 60.203 61.111 0.00 0.00 30.50 5.19
509 4413 1.826487 GTGTCCGTGGTTTGGGCTT 60.826 57.895 0.00 0.00 30.50 4.35
510 4414 1.826054 TGTCCGTGGTTTGGGCTTG 60.826 57.895 0.00 0.00 30.50 4.01
524 4446 1.000274 GGGCTTGAAATGTGTCCACAC 60.000 52.381 1.56 2.69 45.05 3.82
536 4458 1.270094 TGTCCACACGAACATGAGTCC 60.270 52.381 0.00 0.00 0.00 3.85
538 4460 1.626654 CCACACGAACATGAGTCCGC 61.627 60.000 0.00 0.00 0.00 5.54
539 4461 1.733041 ACACGAACATGAGTCCGCG 60.733 57.895 0.00 0.00 0.00 6.46
541 4463 0.802222 CACGAACATGAGTCCGCGAT 60.802 55.000 8.23 0.00 0.00 4.58
542 4464 0.108804 ACGAACATGAGTCCGCGATT 60.109 50.000 8.23 0.00 0.00 3.34
543 4465 0.999406 CGAACATGAGTCCGCGATTT 59.001 50.000 8.23 0.00 0.00 2.17
544 4466 1.267038 CGAACATGAGTCCGCGATTTG 60.267 52.381 8.23 0.00 0.00 2.32
545 4467 1.062587 GAACATGAGTCCGCGATTTGG 59.937 52.381 8.23 0.00 0.00 3.28
546 4468 0.249120 ACATGAGTCCGCGATTTGGA 59.751 50.000 8.23 0.00 0.00 3.53
547 4469 1.134401 ACATGAGTCCGCGATTTGGAT 60.134 47.619 8.23 0.00 37.93 3.41
548 4470 2.102420 ACATGAGTCCGCGATTTGGATA 59.898 45.455 8.23 0.00 37.93 2.59
555 4480 0.858583 CGCGATTTGGATATGCGTCA 59.141 50.000 0.00 0.00 43.50 4.35
560 4485 3.664107 GATTTGGATATGCGTCAGCCTA 58.336 45.455 0.00 0.00 44.33 3.93
589 4514 0.320073 TGTTTTCGTCCGCTCCGATT 60.320 50.000 0.00 0.00 33.81 3.34
642 4567 3.408634 CGTGTTGGAGTTTCCCTAACAT 58.591 45.455 4.85 0.00 39.30 2.71
663 4885 7.113658 ACATAGTGTTAATCCTCGATGTTCT 57.886 36.000 0.00 0.00 0.00 3.01
762 4984 6.076981 ACACTTGCTTGATAAACTTTCCTG 57.923 37.500 0.00 0.00 0.00 3.86
771 5002 7.435068 TTGATAAACTTTCCTGAGTTAGTGC 57.565 36.000 0.00 0.00 38.86 4.40
772 5003 6.530120 TGATAAACTTTCCTGAGTTAGTGCA 58.470 36.000 0.00 0.00 38.86 4.57
773 5004 6.650807 TGATAAACTTTCCTGAGTTAGTGCAG 59.349 38.462 0.00 0.00 38.86 4.41
774 5005 4.689612 AACTTTCCTGAGTTAGTGCAGA 57.310 40.909 0.00 0.00 38.06 4.26
775 5006 4.899352 ACTTTCCTGAGTTAGTGCAGAT 57.101 40.909 0.00 0.00 34.06 2.90
776 5007 4.573900 ACTTTCCTGAGTTAGTGCAGATG 58.426 43.478 0.00 0.00 34.06 2.90
777 5008 4.040952 ACTTTCCTGAGTTAGTGCAGATGT 59.959 41.667 0.00 0.00 34.06 3.06
778 5009 5.246203 ACTTTCCTGAGTTAGTGCAGATGTA 59.754 40.000 0.00 0.00 34.06 2.29
779 5010 4.991153 TCCTGAGTTAGTGCAGATGTAG 57.009 45.455 0.00 0.00 34.06 2.74
782 5013 4.440802 CCTGAGTTAGTGCAGATGTAGACC 60.441 50.000 0.00 0.00 34.06 3.85
805 5036 2.758979 AGACGGTGTCGGACATATCTTT 59.241 45.455 14.78 0.00 41.39 2.52
810 5041 3.621715 GGTGTCGGACATATCTTTGGTTC 59.378 47.826 14.78 0.00 0.00 3.62
818 5049 5.237344 GGACATATCTTTGGTTCGATTCCAG 59.763 44.000 9.28 1.47 36.28 3.86
827 5058 2.353406 GGTTCGATTCCAGTCCGAAAGA 60.353 50.000 0.00 0.00 42.75 2.52
838 5069 3.680458 CAGTCCGAAAGAGAAAAGGCTAC 59.320 47.826 0.00 0.00 0.00 3.58
839 5070 2.666994 GTCCGAAAGAGAAAAGGCTACG 59.333 50.000 0.00 0.00 0.00 3.51
862 5093 1.948104 TGTTTGGACGACTCCTTGTG 58.052 50.000 0.00 0.00 37.48 3.33
865 5096 0.105964 TTGGACGACTCCTTGTGGTG 59.894 55.000 0.00 0.00 37.74 4.17
922 5153 2.307049 GTTTCACACAAATTCTCGGCG 58.693 47.619 0.00 0.00 0.00 6.46
923 5154 1.872388 TTCACACAAATTCTCGGCGA 58.128 45.000 10.14 10.14 0.00 5.54
949 5230 1.503818 TTTTGGCTCGAGGTCGCAAC 61.504 55.000 15.58 0.00 39.60 4.17
950 5231 2.652382 TTTGGCTCGAGGTCGCAACA 62.652 55.000 15.58 0.00 39.60 3.33
951 5232 3.112709 GGCTCGAGGTCGCAACAC 61.113 66.667 15.58 0.00 39.60 3.32
952 5233 2.049063 GCTCGAGGTCGCAACACT 60.049 61.111 15.58 0.00 39.60 3.55
953 5234 2.089349 GCTCGAGGTCGCAACACTC 61.089 63.158 15.58 0.00 39.60 3.51
955 5236 3.470567 CGAGGTCGCAACACTCGC 61.471 66.667 3.34 0.00 45.97 5.03
956 5237 2.355837 GAGGTCGCAACACTCGCA 60.356 61.111 0.00 0.00 0.00 5.10
957 5238 1.954146 GAGGTCGCAACACTCGCAA 60.954 57.895 0.00 0.00 0.00 4.85
958 5239 2.159272 GAGGTCGCAACACTCGCAAC 62.159 60.000 0.00 0.00 0.00 4.17
988 5272 4.412207 GGAAACGCTATCGATTTTGCTTT 58.588 39.130 1.71 3.59 39.41 3.51
994 5278 4.592179 GCTATCGATTTTGCTTTGTCTCC 58.408 43.478 1.71 0.00 0.00 3.71
997 5281 5.712152 ATCGATTTTGCTTTGTCTCCTTT 57.288 34.783 0.00 0.00 0.00 3.11
1004 5288 2.297033 TGCTTTGTCTCCTTTCAATGGC 59.703 45.455 0.00 0.00 0.00 4.40
1005 5289 2.353109 GCTTTGTCTCCTTTCAATGGCC 60.353 50.000 0.00 0.00 0.00 5.36
1006 5290 1.533625 TTGTCTCCTTTCAATGGCCG 58.466 50.000 0.00 0.00 0.00 6.13
1007 5291 0.690192 TGTCTCCTTTCAATGGCCGA 59.310 50.000 0.00 0.00 0.00 5.54
1008 5292 1.087501 GTCTCCTTTCAATGGCCGAC 58.912 55.000 0.00 0.00 0.00 4.79
1009 5293 0.391130 TCTCCTTTCAATGGCCGACG 60.391 55.000 0.00 0.00 0.00 5.12
1010 5294 1.369091 CTCCTTTCAATGGCCGACGG 61.369 60.000 10.29 10.29 0.00 4.79
1069 5353 1.445716 CGTCGACGATCCTAAGGCCT 61.446 60.000 33.35 0.00 43.02 5.19
1218 5511 2.508887 GCCTCTGCTCTGCACTCG 60.509 66.667 0.00 0.00 33.79 4.18
1236 5537 4.632974 CCTCGCTAGCCATGCCCC 62.633 72.222 9.66 0.00 0.00 5.80
1241 5544 2.146061 GCTAGCCATGCCCCTCTCT 61.146 63.158 2.29 0.00 0.00 3.10
1242 5545 0.833834 GCTAGCCATGCCCCTCTCTA 60.834 60.000 2.29 0.00 0.00 2.43
1243 5546 1.949799 CTAGCCATGCCCCTCTCTAT 58.050 55.000 0.00 0.00 0.00 1.98
1244 5547 1.554160 CTAGCCATGCCCCTCTCTATG 59.446 57.143 0.00 0.00 0.00 2.23
1245 5548 1.303155 GCCATGCCCCTCTCTATGC 60.303 63.158 0.00 0.00 0.00 3.14
1259 5562 0.940126 CTATGCATGTCGGTTGGCTC 59.060 55.000 10.16 0.00 0.00 4.70
1263 5569 1.339535 TGCATGTCGGTTGGCTCATTA 60.340 47.619 0.00 0.00 0.00 1.90
1264 5570 1.742831 GCATGTCGGTTGGCTCATTAA 59.257 47.619 0.00 0.00 0.00 1.40
1265 5571 2.358898 GCATGTCGGTTGGCTCATTAAT 59.641 45.455 0.00 0.00 0.00 1.40
1268 5574 4.433186 TGTCGGTTGGCTCATTAATTTG 57.567 40.909 0.00 0.00 0.00 2.32
1269 5575 3.192422 TGTCGGTTGGCTCATTAATTTGG 59.808 43.478 0.00 0.00 0.00 3.28
1272 5578 4.082463 TCGGTTGGCTCATTAATTTGGTTC 60.082 41.667 0.00 0.00 0.00 3.62
1273 5579 4.082245 CGGTTGGCTCATTAATTTGGTTCT 60.082 41.667 0.00 0.00 0.00 3.01
1314 5774 1.444724 CGGCACCGTGTACGAATCA 60.445 57.895 5.91 0.00 43.02 2.57
1605 6468 6.352016 TCTCATCTGCTCCTTATTGGATAC 57.648 41.667 0.00 0.00 45.16 2.24
1622 6495 4.573201 TGGATACTAATAACAAACCGCAGC 59.427 41.667 0.00 0.00 37.61 5.25
1624 6497 3.824414 ACTAATAACAAACCGCAGCAC 57.176 42.857 0.00 0.00 0.00 4.40
1646 6560 5.344128 CACTGTGCTGAATCTTATTTGTTGC 59.656 40.000 0.00 0.00 0.00 4.17
1706 6620 0.616371 TTACCGGCATTACCTGTGCT 59.384 50.000 0.00 0.00 42.16 4.40
1763 6677 0.975556 TCTCCAAGATGCCAGCGGTA 60.976 55.000 0.00 0.00 0.00 4.02
1812 6726 2.614057 GGGACGCTCATTAAGTGGATTG 59.386 50.000 0.00 0.00 39.97 2.67
1841 6755 0.407139 AGCTTGCCACAAGGGAGATT 59.593 50.000 9.23 0.00 40.01 2.40
1856 6770 7.725844 ACAAGGGAGATTAAGATTCTTGTGTTT 59.274 33.333 9.22 0.00 40.85 2.83
1871 6785 0.531974 TGTTTGACGAGGCAGACCAC 60.532 55.000 0.00 0.00 39.06 4.16
1889 6803 1.466167 CACATGCTTGCTGAGGTACAC 59.534 52.381 0.00 0.00 0.00 2.90
1892 6806 1.882912 TGCTTGCTGAGGTACACTTG 58.117 50.000 0.00 0.00 0.00 3.16
1894 6808 2.038952 TGCTTGCTGAGGTACACTTGAT 59.961 45.455 0.00 0.00 0.00 2.57
1898 6812 3.325870 TGCTGAGGTACACTTGATTTCG 58.674 45.455 0.00 0.00 0.00 3.46
1902 6816 3.994392 TGAGGTACACTTGATTTCGCTTC 59.006 43.478 0.00 0.00 0.00 3.86
1908 6822 4.573900 ACACTTGATTTCGCTTCTCATCT 58.426 39.130 0.00 0.00 0.00 2.90
1913 6827 6.700960 ACTTGATTTCGCTTCTCATCTATCAG 59.299 38.462 0.00 0.00 0.00 2.90
1914 6828 4.987285 TGATTTCGCTTCTCATCTATCAGC 59.013 41.667 0.00 0.00 0.00 4.26
1916 6830 3.913548 TCGCTTCTCATCTATCAGCTC 57.086 47.619 0.00 0.00 0.00 4.09
1918 6832 2.225255 CGCTTCTCATCTATCAGCTCGA 59.775 50.000 0.00 0.00 0.00 4.04
1923 6837 4.650734 TCTCATCTATCAGCTCGAGTCAT 58.349 43.478 15.13 6.24 0.00 3.06
1924 6838 4.694982 TCTCATCTATCAGCTCGAGTCATC 59.305 45.833 15.13 0.00 0.00 2.92
1925 6839 4.392940 TCATCTATCAGCTCGAGTCATCA 58.607 43.478 15.13 0.00 0.00 3.07
1926 6840 4.215185 TCATCTATCAGCTCGAGTCATCAC 59.785 45.833 15.13 0.00 0.00 3.06
1927 6841 2.881513 TCTATCAGCTCGAGTCATCACC 59.118 50.000 15.13 0.00 0.00 4.02
1928 6842 1.478631 ATCAGCTCGAGTCATCACCA 58.521 50.000 15.13 0.00 0.00 4.17
2014 7744 2.653726 TGTGCTGGTGAATGTTCTTGT 58.346 42.857 0.00 0.00 0.00 3.16
2055 7785 7.772757 AGTGATTCTAAAAGGATCATGAAGGAC 59.227 37.037 0.00 0.00 0.00 3.85
2088 7818 1.070134 GCTGGTGACTGTCAGGTAACA 59.930 52.381 11.41 5.04 41.41 2.41
2094 7827 4.035208 GGTGACTGTCAGGTAACACTTTTG 59.965 45.833 11.41 0.00 41.41 2.44
2099 7832 4.787551 TGTCAGGTAACACTTTTGGTCAT 58.212 39.130 0.00 0.00 41.41 3.06
2100 7833 4.578516 TGTCAGGTAACACTTTTGGTCATG 59.421 41.667 0.00 0.00 41.41 3.07
2134 7867 7.425577 TTGACTTTGACAGTAGAATCACATG 57.574 36.000 0.00 0.00 35.01 3.21
2140 7873 5.062528 TGACAGTAGAATCACATGCAACAA 58.937 37.500 0.00 0.00 0.00 2.83
2174 7908 6.192360 CGGAATAGTTCAAAATCGAATGTCC 58.808 40.000 0.00 0.00 0.00 4.02
2181 7915 4.532276 TCAAAATCGAATGTCCGTTGTTG 58.468 39.130 0.00 0.00 0.00 3.33
2198 7932 2.957680 TGTTGTGGCAATCATGTGTTCT 59.042 40.909 0.00 0.00 0.00 3.01
2202 7936 4.650734 TGTGGCAATCATGTGTTCTAGAA 58.349 39.130 0.00 0.00 0.00 2.10
2227 7969 9.933723 AAAATATTTTGAATCTTGGGACTTCTG 57.066 29.630 12.62 0.00 0.00 3.02
2240 7982 3.435169 GGGACTTCTGAAGGGAAACAACT 60.435 47.826 20.61 0.00 0.00 3.16
2248 7990 5.656416 TCTGAAGGGAAACAACTTGTTCATT 59.344 36.000 7.62 0.90 40.14 2.57
2310 8116 4.038883 ACCGGTTGCTAATGATAGGTAGAC 59.961 45.833 0.00 0.00 0.00 2.59
2313 8119 3.936372 TGCTAATGATAGGTAGACGGC 57.064 47.619 0.00 0.00 0.00 5.68
2318 8124 6.037098 GCTAATGATAGGTAGACGGCTTATG 58.963 44.000 0.00 0.00 0.00 1.90
2346 8152 1.894466 TGGGTCATTTGGTGATGCAAG 59.106 47.619 0.00 0.00 39.48 4.01
2357 8163 2.831526 GGTGATGCAAGGGGTTGTATTT 59.168 45.455 0.00 0.00 0.00 1.40
2390 8197 9.195411 GCAAGTTTTTCTGATTGTGATATTCAA 57.805 29.630 0.00 0.00 0.00 2.69
2461 8273 7.412627 ACAATACATATTCATCCATGGGCATA 58.587 34.615 13.02 3.89 0.00 3.14
2535 8353 9.003658 GCATTATCTATGTAACTGGCTAATTGT 57.996 33.333 0.00 0.00 36.57 2.71
2551 8369 5.066505 GCTAATTGTACATTGGGAACTCCTG 59.933 44.000 0.00 0.00 36.20 3.86
2563 8381 9.046846 CATTGGGAACTCCTGTCCTATATATAA 57.953 37.037 0.00 0.00 36.20 0.98
2586 8404 9.745880 ATAATTAAGTAGTTGATCCACACTACG 57.254 33.333 15.85 0.00 37.74 3.51
2596 8414 2.173519 TCCACACTACGTCTTAAGGGG 58.826 52.381 1.85 0.00 0.00 4.79
2601 8435 3.629398 ACACTACGTCTTAAGGGGTATCG 59.371 47.826 1.85 1.92 0.00 2.92
2605 8439 4.156455 ACGTCTTAAGGGGTATCGTCTA 57.844 45.455 1.85 0.00 0.00 2.59
2606 8440 4.133078 ACGTCTTAAGGGGTATCGTCTAG 58.867 47.826 1.85 0.00 0.00 2.43
2607 8441 4.133078 CGTCTTAAGGGGTATCGTCTAGT 58.867 47.826 1.85 0.00 0.00 2.57
2608 8442 4.213059 CGTCTTAAGGGGTATCGTCTAGTC 59.787 50.000 1.85 0.00 0.00 2.59
2611 8445 6.939163 GTCTTAAGGGGTATCGTCTAGTCATA 59.061 42.308 1.85 0.00 0.00 2.15
2630 8464 7.155328 AGTCATAGTAATCTTAAAGCCATCCG 58.845 38.462 0.00 0.00 0.00 4.18
2647 8481 2.693762 CGCTGGGTGTCATTGCCTG 61.694 63.158 0.00 0.00 0.00 4.85
2742 8579 5.886960 ATCCTTTGTGATGCTTGTAACTC 57.113 39.130 0.00 0.00 0.00 3.01
2845 8685 8.268850 TCTTAGTACTCATCAAATTTCTTGCC 57.731 34.615 0.00 0.00 0.00 4.52
2869 8709 6.197096 CCTCGATGTGTTTGTTTCTCTTTTTG 59.803 38.462 0.00 0.00 0.00 2.44
2878 8718 5.843673 TGTTTCTCTTTTTGTATGGTGCA 57.156 34.783 0.00 0.00 0.00 4.57
2960 8832 9.543018 CGAGAAAGTGAAGGATTTTATTACAAC 57.457 33.333 0.00 0.00 0.00 3.32
2980 8852 3.267483 ACGGTCATTAAGGATGGAAACG 58.733 45.455 0.00 0.00 36.37 3.60
3321 9193 5.012664 TGACCAATCACAGGTACTATGTGTT 59.987 40.000 22.56 15.78 46.49 3.32
3353 9239 7.384932 CCAATTTTACTCACAGGTTGAATTTCC 59.615 37.037 0.00 0.00 32.21 3.13
3532 9418 7.209471 TCGCATACTTTCCAAAACAAATAGT 57.791 32.000 0.00 0.00 0.00 2.12
3543 9429 6.377996 TCCAAAACAAATAGTGGGAGATGATG 59.622 38.462 0.00 0.00 0.00 3.07
3561 9447 9.787532 GAGATGATGACTGTATTCTATTCTAGC 57.212 37.037 0.00 0.00 0.00 3.42
3653 9569 0.401356 AAATGCAAAAGGCTTGGGGG 59.599 50.000 0.00 0.00 45.15 5.40
3665 9581 0.323451 CTTGGGGGTAAAGGCAGACC 60.323 60.000 0.00 0.00 34.75 3.85
3666 9582 1.068943 TTGGGGGTAAAGGCAGACCA 61.069 55.000 5.07 0.00 37.47 4.02
3691 9613 6.759497 ACCTGAGTAATAAGAAAACATGCC 57.241 37.500 0.00 0.00 0.00 4.40
3713 9641 7.863722 TGCCACCTTTAGTAAACCTAATGATA 58.136 34.615 0.00 0.00 35.59 2.15
3788 9716 8.805175 TGAATAAGATTTGGCAAGAATTCTGAA 58.195 29.630 9.17 0.00 0.00 3.02
3852 9830 6.669977 GCTTGTCGATTATGGACGTTATATGC 60.670 42.308 3.12 0.00 37.22 3.14
3994 9972 3.627395 CAGCTACCCTGTTGTCCAATA 57.373 47.619 0.00 0.00 36.79 1.90
4003 9982 4.704540 CCCTGTTGTCCAATAACAATGCTA 59.295 41.667 0.00 0.00 40.96 3.49
4014 9993 7.038729 TCCAATAACAATGCTAATTTTGTGGGA 60.039 33.333 0.00 0.00 36.26 4.37
4034 10013 7.042335 GTGGGATATATTCCTAACTGAATCGG 58.958 42.308 11.54 0.00 44.75 4.18
4074 10053 1.305219 TTCAACCTGCTATGCGGTGC 61.305 55.000 6.79 0.00 36.13 5.01
4138 10117 1.697432 CACAAAGTACAGGAGGTCCCA 59.303 52.381 0.00 0.00 37.41 4.37
4245 10224 2.418368 TGTGCACTTGTCTTCCAACT 57.582 45.000 19.41 0.00 0.00 3.16
4274 10253 4.391830 ACTTATATGATTATGTTGCCGCCG 59.608 41.667 0.00 0.00 0.00 6.46
4275 10254 1.518325 TATGATTATGTTGCCGCCGG 58.482 50.000 0.00 0.00 0.00 6.13
4288 10267 4.973055 GCCGGCACACACGTGGTA 62.973 66.667 24.80 0.00 43.81 3.25
4295 10274 1.666700 GCACACACGTGGTACTTTTGA 59.333 47.619 21.57 0.00 43.81 2.69
4307 10286 5.017490 TGGTACTTTTGAACCAAACTGGAA 58.983 37.500 0.00 0.00 40.96 3.53
4315 10317 0.478507 ACCAAACTGGAAGGGTCAGG 59.521 55.000 0.00 0.00 40.96 3.86
4316 10318 0.771127 CCAAACTGGAAGGGTCAGGA 59.229 55.000 0.00 0.00 40.96 3.86
4317 10319 1.271597 CCAAACTGGAAGGGTCAGGAG 60.272 57.143 0.00 0.00 40.96 3.69
4318 10320 1.421646 CAAACTGGAAGGGTCAGGAGT 59.578 52.381 0.00 0.00 39.30 3.85
4319 10321 1.821088 AACTGGAAGGGTCAGGAGTT 58.179 50.000 0.00 0.00 39.30 3.01
4320 10322 1.821088 ACTGGAAGGGTCAGGAGTTT 58.179 50.000 0.00 0.00 39.30 2.66
4321 10323 1.421646 ACTGGAAGGGTCAGGAGTTTG 59.578 52.381 0.00 0.00 39.30 2.93
4322 10324 0.771127 TGGAAGGGTCAGGAGTTTGG 59.229 55.000 0.00 0.00 0.00 3.28
4323 10325 1.064825 GGAAGGGTCAGGAGTTTGGA 58.935 55.000 0.00 0.00 0.00 3.53
4324 10326 1.636003 GGAAGGGTCAGGAGTTTGGAT 59.364 52.381 0.00 0.00 0.00 3.41
4325 10327 2.041755 GGAAGGGTCAGGAGTTTGGATT 59.958 50.000 0.00 0.00 0.00 3.01
4326 10328 3.265995 GGAAGGGTCAGGAGTTTGGATTA 59.734 47.826 0.00 0.00 0.00 1.75
4327 10329 4.263771 GGAAGGGTCAGGAGTTTGGATTAA 60.264 45.833 0.00 0.00 0.00 1.40
4328 10330 4.576330 AGGGTCAGGAGTTTGGATTAAG 57.424 45.455 0.00 0.00 0.00 1.85
4329 10331 3.916989 AGGGTCAGGAGTTTGGATTAAGT 59.083 43.478 0.00 0.00 0.00 2.24
4330 10332 4.354087 AGGGTCAGGAGTTTGGATTAAGTT 59.646 41.667 0.00 0.00 0.00 2.66
4331 10333 4.459337 GGGTCAGGAGTTTGGATTAAGTTG 59.541 45.833 0.00 0.00 0.00 3.16
4332 10334 5.070685 GGTCAGGAGTTTGGATTAAGTTGT 58.929 41.667 0.00 0.00 0.00 3.32
4333 10335 6.235664 GGTCAGGAGTTTGGATTAAGTTGTA 58.764 40.000 0.00 0.00 0.00 2.41
4334 10336 6.713450 GGTCAGGAGTTTGGATTAAGTTGTAA 59.287 38.462 0.00 0.00 0.00 2.41
4335 10337 7.308408 GGTCAGGAGTTTGGATTAAGTTGTAAC 60.308 40.741 0.00 0.00 0.00 2.50
4336 10338 7.444487 GTCAGGAGTTTGGATTAAGTTGTAACT 59.556 37.037 0.00 0.00 42.04 2.24
4337 10339 8.653191 TCAGGAGTTTGGATTAAGTTGTAACTA 58.347 33.333 0.00 0.00 38.57 2.24
4338 10340 8.936864 CAGGAGTTTGGATTAAGTTGTAACTAG 58.063 37.037 0.00 0.00 38.57 2.57
4383 10385 8.082242 TGTCATATACCTTGATATCGTGAACTG 58.918 37.037 0.00 0.00 0.00 3.16
4394 10396 7.492524 TGATATCGTGAACTGAGAATAGCTTT 58.507 34.615 0.00 0.00 0.00 3.51
4403 10405 8.721478 TGAACTGAGAATAGCTTTGATGTTTAC 58.279 33.333 0.00 0.00 0.00 2.01
4424 10426 2.482721 CGTACCTTGTGATGGAACCAAC 59.517 50.000 0.00 0.00 0.00 3.77
4425 10427 3.751518 GTACCTTGTGATGGAACCAACT 58.248 45.455 0.00 0.00 0.00 3.16
4429 10431 4.042809 ACCTTGTGATGGAACCAACTCATA 59.957 41.667 6.68 0.00 0.00 2.15
4468 10510 0.532417 GCACCTGCCACATTTTTGCA 60.532 50.000 0.00 0.00 34.31 4.08
4493 10535 4.260985 ACACTTTGTTGATGGCATCGATA 58.739 39.130 19.96 14.88 0.00 2.92
4514 10556 6.537660 CGATATCACACCATATGATGAAGCAT 59.462 38.462 3.38 1.44 37.38 3.79
4552 10594 6.501781 ACAATCACTTTCTGAGCTTTTCTTG 58.498 36.000 0.00 0.00 30.20 3.02
4553 10595 5.702349 ATCACTTTCTGAGCTTTTCTTGG 57.298 39.130 0.00 0.00 30.20 3.61
4554 10596 3.316308 TCACTTTCTGAGCTTTTCTTGGC 59.684 43.478 0.00 0.00 0.00 4.52
4555 10597 2.625314 ACTTTCTGAGCTTTTCTTGGCC 59.375 45.455 0.00 0.00 0.00 5.36
4556 10598 2.363306 TTCTGAGCTTTTCTTGGCCA 57.637 45.000 0.00 0.00 0.00 5.36
4557 10599 2.363306 TCTGAGCTTTTCTTGGCCAA 57.637 45.000 19.25 19.25 0.00 4.52
4558 10600 2.880443 TCTGAGCTTTTCTTGGCCAAT 58.120 42.857 20.85 0.88 0.00 3.16
4559 10601 4.032960 TCTGAGCTTTTCTTGGCCAATA 57.967 40.909 20.85 9.50 0.00 1.90
4560 10602 4.406456 TCTGAGCTTTTCTTGGCCAATAA 58.594 39.130 20.85 15.97 0.00 1.40
4561 10603 4.832266 TCTGAGCTTTTCTTGGCCAATAAA 59.168 37.500 20.85 21.23 0.00 1.40
4562 10604 4.881920 TGAGCTTTTCTTGGCCAATAAAC 58.118 39.130 24.21 15.74 0.00 2.01
4563 10605 4.245660 GAGCTTTTCTTGGCCAATAAACC 58.754 43.478 24.21 18.43 0.00 3.27
4564 10606 3.645687 AGCTTTTCTTGGCCAATAAACCA 59.354 39.130 24.21 12.82 0.00 3.67
4565 10607 4.102367 AGCTTTTCTTGGCCAATAAACCAA 59.898 37.500 24.21 12.21 43.59 3.67
4566 10608 5.003160 GCTTTTCTTGGCCAATAAACCAAT 58.997 37.500 24.21 0.00 44.67 3.16
4567 10609 5.106594 GCTTTTCTTGGCCAATAAACCAATG 60.107 40.000 24.21 13.70 44.67 2.82
4568 10610 5.559148 TTTCTTGGCCAATAAACCAATGT 57.441 34.783 20.85 0.00 44.67 2.71
4569 10611 4.533919 TCTTGGCCAATAAACCAATGTG 57.466 40.909 20.85 2.31 44.67 3.21
4570 10612 3.900601 TCTTGGCCAATAAACCAATGTGT 59.099 39.130 20.85 0.00 44.67 3.72
4571 10613 5.080337 TCTTGGCCAATAAACCAATGTGTA 58.920 37.500 20.85 0.00 44.67 2.90
4572 10614 5.719085 TCTTGGCCAATAAACCAATGTGTAT 59.281 36.000 20.85 0.00 44.67 2.29
4573 10615 6.212388 TCTTGGCCAATAAACCAATGTGTATT 59.788 34.615 20.85 0.00 44.67 1.89
4574 10616 6.365970 TGGCCAATAAACCAATGTGTATTT 57.634 33.333 0.61 0.00 33.45 1.40
4575 10617 6.169094 TGGCCAATAAACCAATGTGTATTTG 58.831 36.000 0.61 0.00 33.45 2.32
4576 10618 6.014242 TGGCCAATAAACCAATGTGTATTTGA 60.014 34.615 0.61 0.00 33.45 2.69
4577 10619 6.312672 GGCCAATAAACCAATGTGTATTTGAC 59.687 38.462 0.00 0.00 33.45 3.18
4578 10620 6.870965 GCCAATAAACCAATGTGTATTTGACA 59.129 34.615 0.00 0.00 33.45 3.58
4579 10621 7.548780 GCCAATAAACCAATGTGTATTTGACAT 59.451 33.333 0.00 0.00 41.14 3.06
4580 10622 9.434420 CCAATAAACCAATGTGTATTTGACATT 57.566 29.630 0.00 0.00 43.34 2.71
4585 10627 8.592105 AACCAATGTGTATTTGACATTTTCTG 57.408 30.769 0.00 0.00 41.16 3.02
4586 10628 7.950512 ACCAATGTGTATTTGACATTTTCTGA 58.049 30.769 0.00 0.00 41.16 3.27
4587 10629 8.084073 ACCAATGTGTATTTGACATTTTCTGAG 58.916 33.333 0.00 0.00 41.16 3.35
4588 10630 7.062605 CCAATGTGTATTTGACATTTTCTGAGC 59.937 37.037 0.00 0.00 41.16 4.26
4589 10631 6.882610 TGTGTATTTGACATTTTCTGAGCT 57.117 33.333 0.00 0.00 41.14 4.09
4590 10632 7.275888 TGTGTATTTGACATTTTCTGAGCTT 57.724 32.000 0.00 0.00 41.14 3.74
4591 10633 7.715657 TGTGTATTTGACATTTTCTGAGCTTT 58.284 30.769 0.00 0.00 41.14 3.51
4592 10634 8.196771 TGTGTATTTGACATTTTCTGAGCTTTT 58.803 29.630 0.00 0.00 41.14 2.27
4593 10635 8.694394 GTGTATTTGACATTTTCTGAGCTTTTC 58.306 33.333 0.00 0.00 41.14 2.29
4594 10636 8.632679 TGTATTTGACATTTTCTGAGCTTTTCT 58.367 29.630 0.00 0.00 31.20 2.52
4595 10637 9.468532 GTATTTGACATTTTCTGAGCTTTTCTT 57.531 29.630 0.00 0.00 0.00 2.52
4596 10638 8.953368 ATTTGACATTTTCTGAGCTTTTCTTT 57.047 26.923 0.00 0.00 0.00 2.52
4620 10662 6.169094 TGCCAATAAACCAATGTGTATTTGG 58.831 36.000 1.01 1.01 33.45 3.28
4664 10706 7.928307 AACATTGTTGTAGCACTCAAGATAT 57.072 32.000 0.15 0.00 34.06 1.63
4796 11443 2.268298 TCAAAATACTCGCTCGGAAGC 58.732 47.619 0.00 0.00 45.56 3.86
4826 11475 4.697756 TGCTGCGGGCTGTGGTAC 62.698 66.667 0.00 0.00 42.39 3.34
4880 11529 3.201045 TGGATATGAAATTCGGACACCCA 59.799 43.478 0.00 0.00 0.00 4.51
4883 11532 1.600023 TGAAATTCGGACACCCACAC 58.400 50.000 0.00 0.00 0.00 3.82
4885 11534 0.179040 AAATTCGGACACCCACACGT 60.179 50.000 0.00 0.00 0.00 4.49
4886 11535 0.601841 AATTCGGACACCCACACGTC 60.602 55.000 0.00 0.00 0.00 4.34
4888 11537 2.355837 CGGACACCCACACGTCTG 60.356 66.667 0.00 0.00 32.57 3.51
4889 11538 2.819550 GGACACCCACACGTCTGT 59.180 61.111 0.00 0.00 32.57 3.41
4911 11563 2.774439 ACATTTCAGAACCGTGTTGC 57.226 45.000 0.00 0.00 0.00 4.17
4915 11567 1.674359 TTCAGAACCGTGTTGCATGT 58.326 45.000 0.00 0.00 0.00 3.21
4927 11579 4.370917 GTGTTGCATGTCAAAAATGGTCT 58.629 39.130 4.47 0.00 36.26 3.85
4953 11606 2.031157 GTGTCAGTCCGGATTTTTGTGG 60.031 50.000 7.81 0.00 0.00 4.17
4955 11608 1.422024 TCAGTCCGGATTTTTGTGGGA 59.578 47.619 7.81 0.00 0.00 4.37
4961 11614 3.158676 CCGGATTTTTGTGGGAGGTTTA 58.841 45.455 0.00 0.00 0.00 2.01
4963 11616 3.365565 CGGATTTTTGTGGGAGGTTTACG 60.366 47.826 0.00 0.00 0.00 3.18
5005 11658 5.191124 CCCTTAGGGTATTCAAACCACTACT 59.809 44.000 9.64 0.00 41.67 2.57
5019 11704 9.796120 TCAAACCACTACTAAATTTTGAGTTTG 57.204 29.630 17.15 17.15 40.85 2.93
5020 11705 8.539674 CAAACCACTACTAAATTTTGAGTTTGC 58.460 33.333 6.63 0.00 35.50 3.68
5021 11706 7.341445 ACCACTACTAAATTTTGAGTTTGCA 57.659 32.000 6.63 0.00 0.00 4.08
5022 11707 7.425606 ACCACTACTAAATTTTGAGTTTGCAG 58.574 34.615 6.63 0.00 0.00 4.41
5023 11708 7.284489 ACCACTACTAAATTTTGAGTTTGCAGA 59.716 33.333 6.63 0.00 0.00 4.26
5024 11709 8.299570 CCACTACTAAATTTTGAGTTTGCAGAT 58.700 33.333 6.63 0.00 0.00 2.90
5025 11710 9.121517 CACTACTAAATTTTGAGTTTGCAGATG 57.878 33.333 6.63 0.00 0.00 2.90
5026 11711 8.850156 ACTACTAAATTTTGAGTTTGCAGATGT 58.150 29.630 6.63 0.00 0.00 3.06
5098 11784 7.894753 TTGAATGGATCCTGTGCAATATTTA 57.105 32.000 14.23 0.00 0.00 1.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 3929 6.600822 AGAACAGCAGCATACAATGAATAACT 59.399 34.615 0.00 0.00 0.00 2.24
30 3931 7.395190 AAGAACAGCAGCATACAATGAATAA 57.605 32.000 0.00 0.00 0.00 1.40
62 3963 7.553760 TGAACAACACATCAGCACATTATCTAT 59.446 33.333 0.00 0.00 0.00 1.98
63 3964 6.878389 TGAACAACACATCAGCACATTATCTA 59.122 34.615 0.00 0.00 0.00 1.98
71 3972 4.209703 CCAAAATGAACAACACATCAGCAC 59.790 41.667 0.00 0.00 0.00 4.40
74 3975 4.984161 GTCCCAAAATGAACAACACATCAG 59.016 41.667 0.00 0.00 0.00 2.90
78 3979 3.099905 TGGTCCCAAAATGAACAACACA 58.900 40.909 0.00 0.00 0.00 3.72
87 3988 1.341080 AGGCTGTTGGTCCCAAAATG 58.659 50.000 0.00 0.00 37.70 2.32
102 4003 3.121738 AGTGCGTTTTACTTGTAGGCT 57.878 42.857 0.00 0.00 0.00 4.58
114 4015 7.589395 TCATTTATGTTTCACATAGTGCGTTT 58.411 30.769 0.00 0.00 41.56 3.60
137 4038 7.285172 TCTCTTCAAATGGTTCACTCAATTTCA 59.715 33.333 0.00 0.00 0.00 2.69
138 4039 7.592903 GTCTCTTCAAATGGTTCACTCAATTTC 59.407 37.037 0.00 0.00 0.00 2.17
139 4040 7.428826 GTCTCTTCAAATGGTTCACTCAATTT 58.571 34.615 0.00 0.00 0.00 1.82
140 4041 6.015940 GGTCTCTTCAAATGGTTCACTCAATT 60.016 38.462 0.00 0.00 0.00 2.32
142 4043 4.821805 GGTCTCTTCAAATGGTTCACTCAA 59.178 41.667 0.00 0.00 0.00 3.02
143 4044 4.141505 TGGTCTCTTCAAATGGTTCACTCA 60.142 41.667 0.00 0.00 0.00 3.41
144 4045 4.389374 TGGTCTCTTCAAATGGTTCACTC 58.611 43.478 0.00 0.00 0.00 3.51
149 4053 5.535753 CCTTTTGGTCTCTTCAAATGGTT 57.464 39.130 11.11 0.00 41.02 3.67
179 4083 4.286297 TCCACAGTTGAAGATAGTTGGG 57.714 45.455 0.00 0.00 0.00 4.12
180 4084 6.824305 ATTTCCACAGTTGAAGATAGTTGG 57.176 37.500 0.00 0.00 0.00 3.77
190 4094 4.281435 TGTAGTCGGTATTTCCACAGTTGA 59.719 41.667 0.00 0.00 35.57 3.18
195 4099 3.614630 CGGTTGTAGTCGGTATTTCCACA 60.615 47.826 0.00 0.00 35.57 4.17
197 4101 2.824936 TCGGTTGTAGTCGGTATTTCCA 59.175 45.455 0.00 0.00 35.57 3.53
207 4111 0.793861 TTGCGCAATCGGTTGTAGTC 59.206 50.000 21.02 2.66 37.65 2.59
217 4121 0.313672 TGGTTGGTCTTTGCGCAATC 59.686 50.000 25.64 16.59 0.00 2.67
219 4123 0.532573 TTTGGTTGGTCTTTGCGCAA 59.467 45.000 21.02 21.02 0.00 4.85
241 4145 9.598517 TGAACAAAATAGTCTGCTTGAATTTTT 57.401 25.926 0.00 0.00 28.24 1.94
246 4150 6.016024 AGCATGAACAAAATAGTCTGCTTGAA 60.016 34.615 0.00 0.00 35.31 2.69
247 4151 5.474532 AGCATGAACAAAATAGTCTGCTTGA 59.525 36.000 0.00 0.00 35.31 3.02
250 4154 4.397417 GGAGCATGAACAAAATAGTCTGCT 59.603 41.667 0.00 0.00 41.11 4.24
251 4155 4.397417 AGGAGCATGAACAAAATAGTCTGC 59.603 41.667 0.00 0.00 0.00 4.26
254 4158 6.500684 TCAAGGAGCATGAACAAAATAGTC 57.499 37.500 0.00 0.00 0.00 2.59
296 4200 2.431057 GGGTCAGTGATACGTCTCCAAT 59.569 50.000 0.00 0.00 0.00 3.16
298 4202 1.272258 TGGGTCAGTGATACGTCTCCA 60.272 52.381 0.00 0.00 0.00 3.86
300 4204 2.093106 AGTGGGTCAGTGATACGTCTC 58.907 52.381 0.00 0.00 0.00 3.36
330 4234 3.202001 CATACGGGTGGCAAGGCG 61.202 66.667 0.00 0.00 0.00 5.52
336 4240 3.305314 TGGAGACATACGGGTGGC 58.695 61.111 0.00 0.00 33.40 5.01
361 4265 0.667792 GACAGTGAGTGGAAGCGTCC 60.668 60.000 12.27 12.27 45.21 4.79
379 4283 1.987855 CCACCGAGGGCCTACTTGA 60.988 63.158 5.73 0.00 0.00 3.02
393 4297 1.838077 AGTCAATGCCTACCTACCACC 59.162 52.381 0.00 0.00 0.00 4.61
394 4298 4.344102 TCATAGTCAATGCCTACCTACCAC 59.656 45.833 0.00 0.00 35.38 4.16
419 4323 2.260434 CACCCGACCACCACTACG 59.740 66.667 0.00 0.00 0.00 3.51
457 4361 4.436998 GCGTCCCCTCTGTGTCCG 62.437 72.222 0.00 0.00 0.00 4.79
480 4384 1.739196 ACGGACACGAGATCGACGA 60.739 57.895 18.74 0.00 44.60 4.20
485 4389 1.068474 CAAACCACGGACACGAGATC 58.932 55.000 0.00 0.00 44.60 2.75
486 4390 0.320421 CCAAACCACGGACACGAGAT 60.320 55.000 0.00 0.00 44.60 2.75
491 4395 1.826487 AAGCCCAAACCACGGACAC 60.826 57.895 0.00 0.00 0.00 3.67
500 4404 2.102252 TGGACACATTTCAAGCCCAAAC 59.898 45.455 0.00 0.00 0.00 2.93
501 4405 2.102252 GTGGACACATTTCAAGCCCAAA 59.898 45.455 0.00 0.00 0.00 3.28
502 4406 1.686052 GTGGACACATTTCAAGCCCAA 59.314 47.619 0.00 0.00 0.00 4.12
503 4407 1.327303 GTGGACACATTTCAAGCCCA 58.673 50.000 0.00 0.00 0.00 5.36
504 4408 1.000274 GTGTGGACACATTTCAAGCCC 60.000 52.381 8.54 0.00 45.75 5.19
506 4410 1.601903 TCGTGTGGACACATTTCAAGC 59.398 47.619 8.54 0.00 46.75 4.01
507 4411 3.064682 TGTTCGTGTGGACACATTTCAAG 59.935 43.478 8.54 0.00 46.75 3.02
508 4412 3.010420 TGTTCGTGTGGACACATTTCAA 58.990 40.909 8.54 0.00 46.75 2.69
509 4413 2.633488 TGTTCGTGTGGACACATTTCA 58.367 42.857 8.54 3.97 46.75 2.69
510 4414 3.249799 TCATGTTCGTGTGGACACATTTC 59.750 43.478 8.54 0.00 46.75 2.17
526 4448 1.086696 CCAAATCGCGGACTCATGTT 58.913 50.000 6.13 0.00 0.00 2.71
530 4452 2.754472 CATATCCAAATCGCGGACTCA 58.246 47.619 6.13 0.00 34.69 3.41
538 4460 1.195448 GGCTGACGCATATCCAAATCG 59.805 52.381 0.00 0.00 38.10 3.34
539 4461 2.498167 AGGCTGACGCATATCCAAATC 58.502 47.619 0.00 0.00 38.10 2.17
541 4463 3.769739 ATAGGCTGACGCATATCCAAA 57.230 42.857 0.00 0.00 38.66 3.28
542 4464 3.402110 CAATAGGCTGACGCATATCCAA 58.598 45.455 0.00 0.00 41.81 3.53
543 4465 2.289631 CCAATAGGCTGACGCATATCCA 60.290 50.000 0.00 0.00 41.81 3.41
544 4466 2.350522 CCAATAGGCTGACGCATATCC 58.649 52.381 0.00 0.00 41.81 2.59
545 4467 2.350522 CCCAATAGGCTGACGCATATC 58.649 52.381 0.00 0.00 41.81 1.63
546 4468 2.479566 CCCAATAGGCTGACGCATAT 57.520 50.000 0.00 0.00 44.27 1.78
548 4470 4.885426 CCCAATAGGCTGACGCAT 57.115 55.556 0.00 0.00 38.10 4.73
560 4485 0.958822 GACGAAAACACTGGCCCAAT 59.041 50.000 0.00 0.00 0.00 3.16
570 4495 0.320073 AATCGGAGCGGACGAAAACA 60.320 50.000 4.68 0.00 44.20 2.83
598 4523 1.082169 CGCATTTGGTCCACACGTG 60.082 57.895 15.48 15.48 0.00 4.49
602 4527 1.963855 CCGACGCATTTGGTCCACA 60.964 57.895 0.00 0.00 0.00 4.17
642 4567 6.769134 TGAGAACATCGAGGATTAACACTA 57.231 37.500 3.06 0.00 0.00 2.74
663 4885 2.188062 TGCTCACAAGTCATGCATGA 57.812 45.000 25.42 25.42 0.00 3.07
762 4984 4.720649 TGGTCTACATCTGCACTAACTC 57.279 45.455 0.00 0.00 0.00 3.01
782 5013 2.099263 AGATATGTCCGACACCGTCTTG 59.901 50.000 2.57 0.00 0.00 3.02
797 5028 5.237344 GGACTGGAATCGAACCAAAGATATG 59.763 44.000 14.07 5.33 36.95 1.78
805 5036 0.970640 TTCGGACTGGAATCGAACCA 59.029 50.000 12.84 12.84 37.88 3.67
810 5041 2.941453 TCTCTTTCGGACTGGAATCG 57.059 50.000 0.00 0.00 0.00 3.34
818 5049 2.666994 CGTAGCCTTTTCTCTTTCGGAC 59.333 50.000 0.00 0.00 0.00 4.79
827 5058 2.271944 AACAAGCCGTAGCCTTTTCT 57.728 45.000 0.00 0.00 41.25 2.52
838 5069 1.566018 GGAGTCGTCCAAACAAGCCG 61.566 60.000 0.00 0.00 43.31 5.52
839 5070 0.250338 AGGAGTCGTCCAAACAAGCC 60.250 55.000 0.00 0.00 46.80 4.35
876 5107 0.604243 AATATATTTGGCGGCGCGGA 60.604 50.000 26.95 14.07 0.00 5.54
877 5108 0.179200 GAATATATTTGGCGGCGCGG 60.179 55.000 26.95 11.08 0.00 6.46
878 5109 0.515127 TGAATATATTTGGCGGCGCG 59.485 50.000 26.95 0.00 0.00 6.86
879 5110 2.697431 TTGAATATATTTGGCGGCGC 57.303 45.000 26.17 26.17 0.00 6.53
880 5111 3.420576 CGTTTTGAATATATTTGGCGGCG 59.579 43.478 0.51 0.51 0.00 6.46
881 5112 4.356289 ACGTTTTGAATATATTTGGCGGC 58.644 39.130 0.00 0.00 0.00 6.53
934 5215 3.112709 GTGTTGCGACCTCGAGCC 61.113 66.667 6.99 0.00 43.02 4.70
954 5235 2.354188 GTTTCCGGTTGCGGTTGC 60.354 61.111 0.00 0.00 43.20 4.17
955 5236 2.051703 CGTTTCCGGTTGCGGTTG 60.052 61.111 0.00 0.00 0.00 3.77
956 5237 2.992607 TAGCGTTTCCGGTTGCGGTT 62.993 55.000 19.34 1.76 43.33 4.44
957 5238 2.791501 ATAGCGTTTCCGGTTGCGGT 62.792 55.000 18.53 18.53 43.33 5.68
958 5239 2.032185 GATAGCGTTTCCGGTTGCGG 62.032 60.000 0.00 0.00 43.33 5.69
984 5268 2.353109 GGCCATTGAAAGGAGACAAAGC 60.353 50.000 0.00 0.00 0.00 3.51
988 5272 0.690192 TCGGCCATTGAAAGGAGACA 59.310 50.000 2.24 0.00 0.00 3.41
994 5278 2.485122 GCCGTCGGCCATTGAAAG 59.515 61.111 26.23 0.00 44.06 2.62
1012 5296 4.128388 CAAATCGGGGTTGGCGGC 62.128 66.667 0.00 0.00 0.00 6.53
1013 5297 3.448340 CCAAATCGGGGTTGGCGG 61.448 66.667 0.67 0.00 39.21 6.13
1014 5298 2.360600 TCCAAATCGGGGTTGGCG 60.361 61.111 7.55 0.00 44.45 5.69
1015 5299 0.610785 TTCTCCAAATCGGGGTTGGC 60.611 55.000 7.55 0.00 44.45 4.52
1016 5300 1.004277 TCTTCTCCAAATCGGGGTTGG 59.996 52.381 6.39 6.39 45.89 3.77
1017 5301 2.489938 TCTTCTCCAAATCGGGGTTG 57.510 50.000 0.00 0.00 36.19 3.77
1018 5302 2.375509 ACTTCTTCTCCAAATCGGGGTT 59.624 45.455 0.00 0.00 36.19 4.11
1019 5303 1.985895 ACTTCTTCTCCAAATCGGGGT 59.014 47.619 0.00 0.00 36.19 4.95
1020 5304 2.633488 GACTTCTTCTCCAAATCGGGG 58.367 52.381 0.00 0.00 36.02 5.73
1021 5305 2.633488 GGACTTCTTCTCCAAATCGGG 58.367 52.381 0.00 0.00 34.36 5.14
1069 5353 4.047059 GTCCACCGCCGTCTCGAA 62.047 66.667 0.00 0.00 0.00 3.71
1235 5536 2.477825 CAACCGACATGCATAGAGAGG 58.522 52.381 0.00 1.51 0.00 3.69
1236 5537 2.477825 CCAACCGACATGCATAGAGAG 58.522 52.381 0.00 0.00 0.00 3.20
1241 5544 0.251634 TGAGCCAACCGACATGCATA 59.748 50.000 0.00 0.00 0.00 3.14
1242 5545 0.394762 ATGAGCCAACCGACATGCAT 60.395 50.000 0.00 0.00 0.00 3.96
1243 5546 0.608856 AATGAGCCAACCGACATGCA 60.609 50.000 0.00 0.00 0.00 3.96
1244 5547 1.378531 TAATGAGCCAACCGACATGC 58.621 50.000 0.00 0.00 0.00 4.06
1245 5548 4.637483 AATTAATGAGCCAACCGACATG 57.363 40.909 0.00 0.00 0.00 3.21
1259 5562 5.178061 GGGGAGCAAAGAACCAAATTAATG 58.822 41.667 0.00 0.00 0.00 1.90
1263 5569 2.634453 CTGGGGAGCAAAGAACCAAATT 59.366 45.455 0.00 0.00 0.00 1.82
1264 5570 2.250924 CTGGGGAGCAAAGAACCAAAT 58.749 47.619 0.00 0.00 0.00 2.32
1265 5571 1.703411 CTGGGGAGCAAAGAACCAAA 58.297 50.000 0.00 0.00 0.00 3.28
1268 5574 0.895559 CACCTGGGGAGCAAAGAACC 60.896 60.000 0.00 0.00 0.00 3.62
1269 5575 0.895559 CCACCTGGGGAGCAAAGAAC 60.896 60.000 0.00 0.00 0.00 3.01
1272 5578 2.677875 GCCACCTGGGGAGCAAAG 60.678 66.667 0.00 0.00 37.04 2.77
1273 5579 4.299796 GGCCACCTGGGGAGCAAA 62.300 66.667 0.00 0.00 37.04 3.68
1314 5774 2.359602 TCCTCGAAGGTCGTCGCT 60.360 61.111 1.65 0.00 41.35 4.93
1593 6408 8.287503 GCGGTTTGTTATTAGTATCCAATAAGG 58.712 37.037 0.00 0.00 39.47 2.69
1594 6409 8.832521 TGCGGTTTGTTATTAGTATCCAATAAG 58.167 33.333 0.00 0.00 30.52 1.73
1605 6468 3.188460 ACAGTGCTGCGGTTTGTTATTAG 59.812 43.478 0.00 0.00 0.00 1.73
1622 6495 5.344128 GCAACAAATAAGATTCAGCACAGTG 59.656 40.000 0.00 0.00 0.00 3.66
1624 6497 5.706916 AGCAACAAATAAGATTCAGCACAG 58.293 37.500 0.00 0.00 0.00 3.66
1755 6669 0.537188 ACCTGATCAGTTACCGCTGG 59.463 55.000 21.11 6.16 37.12 4.85
1758 6672 0.249398 ACCACCTGATCAGTTACCGC 59.751 55.000 21.11 0.00 0.00 5.68
1763 6677 2.881403 GCCAATCACCACCTGATCAGTT 60.881 50.000 21.11 4.13 38.82 3.16
1817 6731 0.600057 CCCTTGTGGCAAGCTTCTTC 59.400 55.000 0.00 0.00 0.00 2.87
1841 6755 4.451096 GCCTCGTCAAACACAAGAATCTTA 59.549 41.667 0.00 0.00 0.00 2.10
1856 6770 1.293179 CATGTGGTCTGCCTCGTCA 59.707 57.895 0.00 0.00 35.27 4.35
1871 6785 2.105006 AGTGTACCTCAGCAAGCATG 57.895 50.000 0.00 0.00 0.00 4.06
1889 6803 6.346758 GCTGATAGATGAGAAGCGAAATCAAG 60.347 42.308 0.00 0.00 0.00 3.02
1892 6806 5.229423 AGCTGATAGATGAGAAGCGAAATC 58.771 41.667 0.00 0.00 38.90 2.17
1894 6808 4.615949 GAGCTGATAGATGAGAAGCGAAA 58.384 43.478 0.00 0.00 38.90 3.46
1898 6812 3.253188 ACTCGAGCTGATAGATGAGAAGC 59.747 47.826 13.61 0.00 0.00 3.86
1902 6816 4.455190 TGATGACTCGAGCTGATAGATGAG 59.545 45.833 13.61 0.00 0.00 2.90
1908 6822 2.654863 TGGTGATGACTCGAGCTGATA 58.345 47.619 13.61 0.00 0.00 2.15
1913 6827 7.063544 GGTATATTAATTGGTGATGACTCGAGC 59.936 40.741 13.61 6.11 0.00 5.03
1914 6828 7.545965 GGGTATATTAATTGGTGATGACTCGAG 59.454 40.741 11.84 11.84 0.00 4.04
1916 6830 7.158697 TGGGTATATTAATTGGTGATGACTCG 58.841 38.462 0.00 0.00 0.00 4.18
1918 6832 9.300681 CATTGGGTATATTAATTGGTGATGACT 57.699 33.333 0.00 0.00 0.00 3.41
1987 7716 3.554934 ACATTCACCAGCACAAGAAAGA 58.445 40.909 0.00 0.00 0.00 2.52
2055 7785 1.066645 TCACCAGCACTGCTCTGTATG 60.067 52.381 0.00 0.00 36.40 2.39
2088 7818 6.601613 TCAAAAGTAGTCACATGACCAAAAGT 59.398 34.615 8.41 0.00 45.85 2.66
2094 7827 6.260050 TCAAAGTCAAAAGTAGTCACATGACC 59.740 38.462 8.41 0.00 45.85 4.02
2099 7832 6.170506 ACTGTCAAAGTCAAAAGTAGTCACA 58.829 36.000 0.00 0.00 31.64 3.58
2100 7833 6.663944 ACTGTCAAAGTCAAAAGTAGTCAC 57.336 37.500 0.00 0.00 31.64 3.67
2140 7873 2.224426 TGAACTATTCCGGTGTGCAAGT 60.224 45.455 0.00 0.00 0.00 3.16
2149 7882 6.119144 ACATTCGATTTTGAACTATTCCGG 57.881 37.500 0.00 0.00 0.00 5.14
2150 7883 6.192360 GGACATTCGATTTTGAACTATTCCG 58.808 40.000 0.00 0.00 0.00 4.30
2174 7908 2.052891 CACATGATTGCCACAACAACG 58.947 47.619 0.00 0.00 31.03 4.10
2181 7915 5.627499 TTTCTAGAACACATGATTGCCAC 57.373 39.130 4.18 0.00 0.00 5.01
2202 7936 9.312904 TCAGAAGTCCCAAGATTCAAAATATTT 57.687 29.630 0.00 0.00 0.00 1.40
2227 7969 7.489160 AGTAAATGAACAAGTTGTTTCCCTTC 58.511 34.615 21.70 9.17 41.28 3.46
2240 7982 7.935520 TGAGCACATACAAAGTAAATGAACAA 58.064 30.769 0.00 0.00 0.00 2.83
2248 7990 5.003160 AGCACATGAGCACATACAAAGTAA 58.997 37.500 17.61 0.00 35.09 2.24
2310 8116 2.616842 GACCCATTTACACCATAAGCCG 59.383 50.000 0.00 0.00 0.00 5.52
2313 8119 6.154363 ACCAAATGACCCATTTACACCATAAG 59.846 38.462 4.80 0.00 41.40 1.73
2318 8124 3.829601 TCACCAAATGACCCATTTACACC 59.170 43.478 4.80 0.00 41.40 4.16
2346 8152 7.737972 AACTTGCAAAATTAAATACAACCCC 57.262 32.000 0.00 0.00 0.00 4.95
2357 8163 9.376075 TCACAATCAGAAAAACTTGCAAAATTA 57.624 25.926 0.00 0.00 0.00 1.40
2390 8197 8.261492 TGTGTTGCTTCAAACATAAACAAAAT 57.739 26.923 0.00 0.00 41.81 1.82
2441 8251 6.727231 ACAAATATGCCCATGGATGAATATGT 59.273 34.615 15.22 7.99 0.00 2.29
2503 8321 6.037610 GCCAGTTACATAGATAATGCCATAGC 59.962 42.308 0.00 0.00 39.39 2.97
2535 8353 2.915869 AGGACAGGAGTTCCCAATGTA 58.084 47.619 0.00 0.00 37.41 2.29
2563 8381 7.166691 ACGTAGTGTGGATCAACTACTTAAT 57.833 36.000 20.98 8.84 42.51 1.40
2586 8404 5.128919 TGACTAGACGATACCCCTTAAGAC 58.871 45.833 3.36 0.00 0.00 3.01
2605 8439 7.155328 CGGATGGCTTTAAGATTACTATGACT 58.845 38.462 0.00 0.00 0.00 3.41
2606 8440 6.128526 GCGGATGGCTTTAAGATTACTATGAC 60.129 42.308 0.00 0.00 39.11 3.06
2607 8441 5.932303 GCGGATGGCTTTAAGATTACTATGA 59.068 40.000 0.00 0.00 39.11 2.15
2608 8442 6.170675 GCGGATGGCTTTAAGATTACTATG 57.829 41.667 0.00 0.00 39.11 2.23
2630 8464 2.998279 GCAGGCAATGACACCCAGC 61.998 63.158 0.00 0.00 0.00 4.85
2639 8473 4.558178 TGAATGTAAAGTTGCAGGCAATG 58.442 39.130 10.21 0.00 38.28 2.82
2671 8507 8.143193 AGTGAAATATCAAAGCAAATCAACACA 58.857 29.630 0.00 0.00 37.30 3.72
2690 8526 4.141620 CCACATGGACTAGGCTAGTGAAAT 60.142 45.833 30.75 17.41 39.59 2.17
2742 8579 2.951642 ACATCCATGGAATTACGCCAAG 59.048 45.455 20.67 1.55 39.21 3.61
2798 8638 8.918961 AAGAATGTTCGTAATGTTTTGACAAA 57.081 26.923 0.00 0.00 0.00 2.83
2800 8640 8.832521 ACTAAGAATGTTCGTAATGTTTTGACA 58.167 29.630 0.00 0.00 0.00 3.58
2827 8667 4.326826 TCGAGGCAAGAAATTTGATGAGT 58.673 39.130 0.00 0.00 0.00 3.41
2837 8677 2.948979 ACAAACACATCGAGGCAAGAAA 59.051 40.909 0.00 0.00 0.00 2.52
2844 8684 5.424121 AAAGAGAAACAAACACATCGAGG 57.576 39.130 0.00 0.00 0.00 4.63
2845 8685 6.747280 ACAAAAAGAGAAACAAACACATCGAG 59.253 34.615 0.00 0.00 0.00 4.04
2869 8709 9.807649 AATTCAGATAAGAAAAATGCACCATAC 57.192 29.630 0.00 0.00 0.00 2.39
2889 8760 4.110482 GCAGCTGGCATAAAAGAATTCAG 58.890 43.478 17.12 0.00 43.97 3.02
2960 8832 3.527533 TCGTTTCCATCCTTAATGACCG 58.472 45.455 0.00 0.00 37.59 4.79
2973 8845 6.371548 CCTTCTTCACAAATATCTCGTTTCCA 59.628 38.462 0.00 0.00 0.00 3.53
2980 8852 9.612066 AAGATCTTCCTTCTTCACAAATATCTC 57.388 33.333 0.88 0.00 0.00 2.75
3022 8894 4.058817 GGGACTCGGACTTTATATTGCTG 58.941 47.826 0.00 0.00 0.00 4.41
3159 9031 4.452455 ACATAGTCCTCTTTTGTCAAAGCG 59.548 41.667 0.00 0.00 39.56 4.68
3321 9193 7.721842 TCAACCTGTGAGTAAAATTGGTATGAA 59.278 33.333 0.00 0.00 0.00 2.57
3353 9239 9.754382 CCTTTCAATGGGATAATGTTAGAATTG 57.246 33.333 0.00 0.00 0.00 2.32
3509 9395 6.307800 CCACTATTTGTTTTGGAAAGTATGCG 59.692 38.462 0.00 0.00 0.00 4.73
3532 9418 7.732140 AGAATAGAATACAGTCATCATCTCCCA 59.268 37.037 0.00 0.00 0.00 4.37
3595 9483 7.447238 ACCATTATTATGCTTATAACGGCTGTT 59.553 33.333 16.59 16.59 42.19 3.16
3596 9484 6.940298 ACCATTATTATGCTTATAACGGCTGT 59.060 34.615 0.00 0.00 26.74 4.40
3653 9569 2.814336 CTCAGGTTTGGTCTGCCTTTAC 59.186 50.000 0.00 0.00 35.27 2.01
3665 9581 7.542130 GGCATGTTTTCTTATTACTCAGGTTTG 59.458 37.037 0.00 0.00 0.00 2.93
3666 9582 7.232534 TGGCATGTTTTCTTATTACTCAGGTTT 59.767 33.333 0.00 0.00 0.00 3.27
3713 9641 6.155910 TGAGAAGTTCAATCTCAGGCTAGAAT 59.844 38.462 5.50 0.00 46.23 2.40
3852 9830 9.533253 AGAAAATCAGTTTACAATCCAAACAAG 57.467 29.630 0.00 0.00 38.16 3.16
3968 9946 4.202524 TGGACAACAGGGTAGCTGTTAATT 60.203 41.667 0.00 0.00 42.39 1.40
3973 9951 1.136828 TTGGACAACAGGGTAGCTGT 58.863 50.000 0.00 0.00 36.49 4.40
4014 9993 7.246171 AGCACCGATTCAGTTAGGAATATAT 57.754 36.000 0.00 0.00 37.61 0.86
4026 10005 0.388520 TGTCACGAGCACCGATTCAG 60.389 55.000 5.53 0.00 41.76 3.02
4074 10053 5.045668 TGTCATCAAAATGTCATCGGTTG 57.954 39.130 0.00 0.00 34.32 3.77
4078 10057 6.410048 CGATCTTTGTCATCAAAATGTCATCG 59.590 38.462 0.00 0.00 42.02 3.84
4202 10181 1.544825 TTGCCTCCCGTTCCTGAGAG 61.545 60.000 0.00 0.00 0.00 3.20
4209 10188 0.321653 ACATCTGTTGCCTCCCGTTC 60.322 55.000 0.00 0.00 0.00 3.95
4245 10224 8.341903 CGGCAACATAATCATATAAGTTGAACA 58.658 33.333 0.00 0.00 38.80 3.18
4274 10253 1.018910 AAAAGTACCACGTGTGTGCC 58.981 50.000 15.65 7.50 45.04 5.01
4275 10254 1.666700 TCAAAAGTACCACGTGTGTGC 59.333 47.619 15.65 14.81 45.04 4.57
4288 10267 3.450817 CCCTTCCAGTTTGGTTCAAAAGT 59.549 43.478 0.00 0.00 39.03 2.66
4295 10274 1.133482 CCTGACCCTTCCAGTTTGGTT 60.133 52.381 0.00 0.00 39.03 3.67
4307 10286 3.916989 ACTTAATCCAAACTCCTGACCCT 59.083 43.478 0.00 0.00 0.00 4.34
4320 10322 8.689972 GCCTACTACTAGTTACAACTTAATCCA 58.310 37.037 0.00 0.00 40.37 3.41
4321 10323 8.140628 GGCCTACTACTAGTTACAACTTAATCC 58.859 40.741 0.00 0.00 40.37 3.01
4322 10324 8.140628 GGGCCTACTACTAGTTACAACTTAATC 58.859 40.741 0.84 0.00 40.37 1.75
4323 10325 7.620888 TGGGCCTACTACTAGTTACAACTTAAT 59.379 37.037 4.53 0.00 40.37 1.40
4324 10326 6.953520 TGGGCCTACTACTAGTTACAACTTAA 59.046 38.462 4.53 0.00 40.37 1.85
4325 10327 6.378280 GTGGGCCTACTACTAGTTACAACTTA 59.622 42.308 12.81 0.00 40.37 2.24
4326 10328 5.186603 GTGGGCCTACTACTAGTTACAACTT 59.813 44.000 12.81 0.00 40.37 2.66
4327 10329 4.708909 GTGGGCCTACTACTAGTTACAACT 59.291 45.833 12.81 0.00 42.91 3.16
4328 10330 4.463891 TGTGGGCCTACTACTAGTTACAAC 59.536 45.833 21.02 0.00 0.00 3.32
4329 10331 4.463891 GTGTGGGCCTACTACTAGTTACAA 59.536 45.833 21.02 0.00 0.00 2.41
4330 10332 4.019174 GTGTGGGCCTACTACTAGTTACA 58.981 47.826 21.02 0.00 0.00 2.41
4331 10333 4.276642 AGTGTGGGCCTACTACTAGTTAC 58.723 47.826 21.02 7.37 0.00 2.50
4332 10334 4.598036 AGTGTGGGCCTACTACTAGTTA 57.402 45.455 21.02 0.00 0.00 2.24
4333 10335 3.469750 AGTGTGGGCCTACTACTAGTT 57.530 47.619 21.02 0.00 0.00 2.24
4334 10336 3.469750 AAGTGTGGGCCTACTACTAGT 57.530 47.619 21.02 0.00 0.00 2.57
4335 10337 3.514309 ACAAAGTGTGGGCCTACTACTAG 59.486 47.826 21.02 17.40 0.00 2.57
4336 10338 3.259876 CACAAAGTGTGGGCCTACTACTA 59.740 47.826 21.02 0.00 44.27 1.82
4337 10339 2.038557 CACAAAGTGTGGGCCTACTACT 59.961 50.000 21.02 17.70 44.27 2.57
4338 10340 2.423577 CACAAAGTGTGGGCCTACTAC 58.576 52.381 21.02 15.82 44.27 2.73
4383 10385 7.491696 AGGTACGTAAACATCAAAGCTATTCTC 59.508 37.037 0.00 0.00 0.00 2.87
4394 10396 4.932799 CCATCACAAGGTACGTAAACATCA 59.067 41.667 0.00 0.00 0.00 3.07
4403 10405 2.465860 TGGTTCCATCACAAGGTACG 57.534 50.000 0.00 0.00 0.00 3.67
4443 10445 0.035056 AATGTGGCAGGTGCTAGTCC 60.035 55.000 1.26 0.00 41.70 3.85
4479 10521 3.181456 TGGTGTGATATCGATGCCATCAA 60.181 43.478 8.54 0.00 30.85 2.57
4493 10535 6.304624 AGAATGCTTCATCATATGGTGTGAT 58.695 36.000 15.54 1.72 36.79 3.06
4514 10556 7.993183 AGAAAGTGATTGTTCCTTGTAGAAGAA 59.007 33.333 0.19 0.00 34.01 2.52
4520 10562 5.470098 GCTCAGAAAGTGATTGTTCCTTGTA 59.530 40.000 0.00 0.00 33.51 2.41
4530 10572 5.508657 GCCAAGAAAAGCTCAGAAAGTGATT 60.509 40.000 0.00 0.00 33.51 2.57
4552 10594 6.312672 GTCAAATACACATTGGTTTATTGGCC 59.687 38.462 0.00 0.00 31.90 5.36
4553 10595 6.870965 TGTCAAATACACATTGGTTTATTGGC 59.129 34.615 0.00 0.00 31.90 4.52
4554 10596 9.434420 AATGTCAAATACACATTGGTTTATTGG 57.566 29.630 0.00 0.00 41.86 3.16
4559 10601 9.044150 CAGAAAATGTCAAATACACATTGGTTT 57.956 29.630 0.00 0.00 42.47 3.27
4560 10602 8.420222 TCAGAAAATGTCAAATACACATTGGTT 58.580 29.630 0.00 0.00 42.47 3.67
4561 10603 7.950512 TCAGAAAATGTCAAATACACATTGGT 58.049 30.769 0.00 0.00 42.47 3.67
4562 10604 7.062605 GCTCAGAAAATGTCAAATACACATTGG 59.937 37.037 0.00 0.00 42.47 3.16
4563 10605 7.811236 AGCTCAGAAAATGTCAAATACACATTG 59.189 33.333 0.00 0.00 42.47 2.82
4564 10606 7.889469 AGCTCAGAAAATGTCAAATACACATT 58.111 30.769 0.00 0.00 44.67 2.71
4565 10607 7.458409 AGCTCAGAAAATGTCAAATACACAT 57.542 32.000 0.00 0.00 42.09 3.21
4566 10608 6.882610 AGCTCAGAAAATGTCAAATACACA 57.117 33.333 0.00 0.00 42.09 3.72
4567 10609 8.579682 AAAAGCTCAGAAAATGTCAAATACAC 57.420 30.769 0.00 0.00 42.09 2.90
4568 10610 8.632679 AGAAAAGCTCAGAAAATGTCAAATACA 58.367 29.630 0.00 0.00 43.86 2.29
4569 10611 9.468532 AAGAAAAGCTCAGAAAATGTCAAATAC 57.531 29.630 0.00 0.00 0.00 1.89
4571 10613 8.823818 CAAAGAAAAGCTCAGAAAATGTCAAAT 58.176 29.630 0.00 0.00 0.00 2.32
4572 10614 7.201548 GCAAAGAAAAGCTCAGAAAATGTCAAA 60.202 33.333 0.00 0.00 0.00 2.69
4573 10615 6.256321 GCAAAGAAAAGCTCAGAAAATGTCAA 59.744 34.615 0.00 0.00 0.00 3.18
4574 10616 5.750067 GCAAAGAAAAGCTCAGAAAATGTCA 59.250 36.000 0.00 0.00 0.00 3.58
4575 10617 5.176406 GGCAAAGAAAAGCTCAGAAAATGTC 59.824 40.000 0.00 0.00 0.00 3.06
4576 10618 5.052481 GGCAAAGAAAAGCTCAGAAAATGT 58.948 37.500 0.00 0.00 0.00 2.71
4577 10619 5.051816 TGGCAAAGAAAAGCTCAGAAAATG 58.948 37.500 0.00 0.00 0.00 2.32
4578 10620 5.280654 TGGCAAAGAAAAGCTCAGAAAAT 57.719 34.783 0.00 0.00 0.00 1.82
4579 10621 4.734398 TGGCAAAGAAAAGCTCAGAAAA 57.266 36.364 0.00 0.00 0.00 2.29
4580 10622 4.734398 TTGGCAAAGAAAAGCTCAGAAA 57.266 36.364 0.00 0.00 0.00 2.52
4581 10623 4.942761 ATTGGCAAAGAAAAGCTCAGAA 57.057 36.364 3.01 0.00 0.00 3.02
4582 10624 6.215845 GTTTATTGGCAAAGAAAAGCTCAGA 58.784 36.000 3.01 0.00 28.81 3.27
4583 10625 5.406477 GGTTTATTGGCAAAGAAAAGCTCAG 59.594 40.000 19.35 0.00 28.81 3.35
4584 10626 5.163364 TGGTTTATTGGCAAAGAAAAGCTCA 60.163 36.000 23.42 13.39 28.81 4.26
4585 10627 5.296748 TGGTTTATTGGCAAAGAAAAGCTC 58.703 37.500 23.42 10.13 28.81 4.09
4586 10628 5.289083 TGGTTTATTGGCAAAGAAAAGCT 57.711 34.783 23.42 4.52 28.81 3.74
4587 10629 6.017192 ACATTGGTTTATTGGCAAAGAAAAGC 60.017 34.615 19.61 19.61 28.81 3.51
4588 10630 7.012232 ACACATTGGTTTATTGGCAAAGAAAAG 59.988 33.333 3.01 0.00 28.81 2.27
4589 10631 6.825721 ACACATTGGTTTATTGGCAAAGAAAA 59.174 30.769 3.01 2.83 28.81 2.29
4590 10632 6.352516 ACACATTGGTTTATTGGCAAAGAAA 58.647 32.000 3.01 5.27 0.00 2.52
4591 10633 5.923204 ACACATTGGTTTATTGGCAAAGAA 58.077 33.333 3.01 0.00 0.00 2.52
4592 10634 5.543507 ACACATTGGTTTATTGGCAAAGA 57.456 34.783 3.01 0.00 0.00 2.52
4593 10635 7.903995 AATACACATTGGTTTATTGGCAAAG 57.096 32.000 3.01 0.00 30.68 2.77
4594 10636 7.173907 CCAAATACACATTGGTTTATTGGCAAA 59.826 33.333 3.01 0.00 41.95 3.68
4595 10637 6.652481 CCAAATACACATTGGTTTATTGGCAA 59.348 34.615 0.68 0.68 41.95 4.52
4596 10638 6.169094 CCAAATACACATTGGTTTATTGGCA 58.831 36.000 0.00 0.00 41.95 4.92
4620 10662 4.095782 TGTTTTCAACTCACTACCAACAGC 59.904 41.667 0.00 0.00 0.00 4.40
4642 10684 7.312657 ACATATCTTGAGTGCTACAACAATG 57.687 36.000 0.00 0.00 0.00 2.82
4772 11419 5.464965 TTCCGAGCGAGTATTTTGATTTC 57.535 39.130 0.00 0.00 0.00 2.17
4829 11478 1.807226 GTAGTTGATTTGGGGGCGC 59.193 57.895 0.00 0.00 0.00 6.53
4842 11491 8.500753 TTCATATCCAAAGCAAATACGTAGTT 57.499 30.769 1.75 1.75 37.78 2.24
4880 11529 3.792401 TCTGAAATGTTCACAGACGTGT 58.208 40.909 0.00 0.00 44.02 4.49
4883 11532 3.362986 CGGTTCTGAAATGTTCACAGACG 60.363 47.826 0.00 0.00 39.80 4.18
4885 11534 3.559655 CACGGTTCTGAAATGTTCACAGA 59.440 43.478 0.00 0.00 38.61 3.41
4886 11535 3.312421 ACACGGTTCTGAAATGTTCACAG 59.688 43.478 0.00 0.00 35.46 3.66
4888 11537 3.963383 ACACGGTTCTGAAATGTTCAC 57.037 42.857 0.00 0.00 35.46 3.18
4889 11538 3.488384 GCAACACGGTTCTGAAATGTTCA 60.488 43.478 11.05 0.00 38.17 3.18
4891 11540 2.425312 TGCAACACGGTTCTGAAATGTT 59.575 40.909 9.08 9.08 33.86 2.71
4892 11541 2.020720 TGCAACACGGTTCTGAAATGT 58.979 42.857 0.00 0.00 0.00 2.71
4893 11542 2.772568 TGCAACACGGTTCTGAAATG 57.227 45.000 0.00 0.00 0.00 2.32
4895 11544 2.020720 ACATGCAACACGGTTCTGAAA 58.979 42.857 0.00 0.00 0.00 2.69
4896 11545 1.601903 GACATGCAACACGGTTCTGAA 59.398 47.619 0.00 0.00 0.00 3.02
4898 11547 0.943673 TGACATGCAACACGGTTCTG 59.056 50.000 0.00 0.00 0.00 3.02
4899 11548 1.674359 TTGACATGCAACACGGTTCT 58.326 45.000 0.00 0.00 0.00 3.01
4911 11563 3.253188 ACGTCCAGACCATTTTTGACATG 59.747 43.478 0.00 0.00 0.00 3.21
4915 11567 2.875933 GACACGTCCAGACCATTTTTGA 59.124 45.455 0.00 0.00 0.00 2.69
4953 11606 3.435671 CCAACAATGAGACGTAAACCTCC 59.564 47.826 0.00 0.00 0.00 4.30
4955 11608 4.039973 TCTCCAACAATGAGACGTAAACCT 59.960 41.667 0.00 0.00 34.03 3.50
4961 11614 2.350522 GCATCTCCAACAATGAGACGT 58.649 47.619 0.00 0.00 41.40 4.34
4963 11616 2.019984 GGGCATCTCCAACAATGAGAC 58.980 52.381 0.00 0.00 41.40 3.36
5043 11728 9.909043 CGTATGAACATTTACGATCAAATACAA 57.091 29.630 4.70 0.00 42.83 2.41
5044 11729 9.303537 TCGTATGAACATTTACGATCAAATACA 57.696 29.630 8.19 0.00 43.63 2.29
5070 11755 5.486735 TTGCACAGGATCCATTCAAAAAT 57.513 34.783 15.82 0.00 0.00 1.82


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.