Multiple sequence alignment - TraesCS5B01G534500

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)



BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G534500 chr5B 100.000 3293 0 0 1 3293 690900635 690903927 0.000000e+00 6082.0
1 TraesCS5B01G534500 chr5B 79.026 739 133 7 1141 1861 690877769 690878503 1.370000e-133 486.0
2 TraesCS5B01G534500 chrUn 90.708 2303 120 36 62 2292 68523355 68521075 0.000000e+00 2981.0
3 TraesCS5B01G534500 chrUn 79.904 831 126 25 1141 1939 365280831 365281652 3.690000e-159 571.0
4 TraesCS5B01G534500 chrUn 79.952 828 125 25 1144 1939 385928226 385927408 3.690000e-159 571.0
5 TraesCS5B01G534500 chrUn 79.952 828 125 25 1144 1939 385946926 385946108 3.690000e-159 571.0
6 TraesCS5B01G534500 chrUn 79.904 831 126 25 1141 1939 434364217 434365038 3.690000e-159 571.0
7 TraesCS5B01G534500 chrUn 92.430 251 13 2 2316 2566 68520934 68520690 1.450000e-93 353.0
8 TraesCS5B01G534500 chrUn 97.222 36 1 0 1 36 68523389 68523354 9.870000e-06 62.1
9 TraesCS5B01G534500 chr5D 90.294 2009 104 45 62 2000 547616905 547614918 0.000000e+00 2545.0
10 TraesCS5B01G534500 chr5D 88.869 548 37 11 2029 2566 547614919 547614386 0.000000e+00 652.0
11 TraesCS5B01G534500 chr5D 97.222 36 1 0 1 36 547616939 547616904 9.870000e-06 62.1
12 TraesCS5B01G534500 chr4A 91.751 1867 98 24 7 1827 621572563 621570707 0.000000e+00 2543.0
13 TraesCS5B01G534500 chr4A 95.652 437 15 2 1868 2301 621570712 621570277 0.000000e+00 699.0
14 TraesCS5B01G534500 chr4A 87.045 247 25 6 2316 2561 621570227 621569987 4.190000e-69 272.0
15 TraesCS5B01G534500 chr4A 81.053 95 18 0 408 502 124407125 124407031 3.520000e-10 76.8
16 TraesCS5B01G534500 chr6B 87.619 735 77 10 2567 3293 254722 255450 0.000000e+00 841.0
17 TraesCS5B01G534500 chr4B 87.246 737 79 11 2566 3293 657293320 657294050 0.000000e+00 826.0
18 TraesCS5B01G534500 chr3B 87.079 743 77 13 2564 3293 114607663 114606927 0.000000e+00 822.0
19 TraesCS5B01G534500 chr7D 85.653 704 83 9 2603 3293 7456579 7457277 0.000000e+00 725.0
20 TraesCS5B01G534500 chr7D 83.688 141 21 2 467 605 99192912 99192772 7.410000e-27 132.0
21 TraesCS5B01G534500 chr3A 83.827 742 102 14 2565 3293 75623245 75623981 0.000000e+00 689.0
22 TraesCS5B01G534500 chr7B 91.954 174 10 3 3068 3240 444169993 444169823 1.180000e-59 241.0
23 TraesCS5B01G534500 chr2A 91.379 174 11 3 3068 3240 1634725 1634555 5.490000e-58 235.0
24 TraesCS5B01G534500 chr7A 79.358 218 38 7 398 611 93496590 93496804 2.650000e-31 147.0
25 TraesCS5B01G534500 chr7A 93.182 44 2 1 400 442 733454612 733454569 2.740000e-06 63.9
26 TraesCS5B01G534500 chr1A 78.607 201 35 8 415 610 550139557 550139360 3.450000e-25 126.0
27 TraesCS5B01G534500 chr2B 79.630 162 26 7 453 610 741898152 741898310 3.470000e-20 110.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G534500 chr5B 690900635 690903927 3292 False 6082.000000 6082 100.000000 1 3293 1 chr5B.!!$F2 3292
1 TraesCS5B01G534500 chr5B 690877769 690878503 734 False 486.000000 486 79.026000 1141 1861 1 chr5B.!!$F1 720
2 TraesCS5B01G534500 chrUn 68520690 68523389 2699 True 1132.033333 2981 93.453333 1 2566 3 chrUn.!!$R3 2565
3 TraesCS5B01G534500 chrUn 365280831 365281652 821 False 571.000000 571 79.904000 1141 1939 1 chrUn.!!$F1 798
4 TraesCS5B01G534500 chrUn 385927408 385928226 818 True 571.000000 571 79.952000 1144 1939 1 chrUn.!!$R1 795
5 TraesCS5B01G534500 chrUn 385946108 385946926 818 True 571.000000 571 79.952000 1144 1939 1 chrUn.!!$R2 795
6 TraesCS5B01G534500 chrUn 434364217 434365038 821 False 571.000000 571 79.904000 1141 1939 1 chrUn.!!$F2 798
7 TraesCS5B01G534500 chr5D 547614386 547616939 2553 True 1086.366667 2545 92.128333 1 2566 3 chr5D.!!$R1 2565
8 TraesCS5B01G534500 chr4A 621569987 621572563 2576 True 1171.333333 2543 91.482667 7 2561 3 chr4A.!!$R2 2554
9 TraesCS5B01G534500 chr6B 254722 255450 728 False 841.000000 841 87.619000 2567 3293 1 chr6B.!!$F1 726
10 TraesCS5B01G534500 chr4B 657293320 657294050 730 False 826.000000 826 87.246000 2566 3293 1 chr4B.!!$F1 727
11 TraesCS5B01G534500 chr3B 114606927 114607663 736 True 822.000000 822 87.079000 2564 3293 1 chr3B.!!$R1 729
12 TraesCS5B01G534500 chr7D 7456579 7457277 698 False 725.000000 725 85.653000 2603 3293 1 chr7D.!!$F1 690
13 TraesCS5B01G534500 chr3A 75623245 75623981 736 False 689.000000 689 83.827000 2565 3293 1 chr3A.!!$F1 728


AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
623 658 0.108804 CTCTCGGGTATGCGTGTGTT 60.109 55.0 0.0 0.0 0.0 3.32 F
1358 1440 0.394216 TTGGACATGGATTCTGGCCG 60.394 55.0 0.0 0.0 45.5 6.13 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1694 1782 0.988832 TAGCAAACTGTACCCTGGGG 59.011 55.0 18.88 7.87 42.03 4.96 R
2829 3064 0.179215 CTGCAATCCTTCGTTGACGC 60.179 55.0 0.00 0.00 39.60 5.19 R


All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 40 0.796312 GCGCTTGAAGAACGAATGGA 59.204 50.000 0.00 0.00 0.00 3.41
40 41 1.398390 GCGCTTGAAGAACGAATGGAT 59.602 47.619 0.00 0.00 0.00 3.41
73 74 3.181439 ACAAGGAGACAAGGGAAAAGAGG 60.181 47.826 0.00 0.00 0.00 3.69
74 75 1.352687 AGGAGACAAGGGAAAAGAGGC 59.647 52.381 0.00 0.00 0.00 4.70
79 80 3.384789 AGACAAGGGAAAAGAGGCAAAAC 59.615 43.478 0.00 0.00 0.00 2.43
165 167 5.005779 GCTTGACACGATCATTTACCTAGTG 59.994 44.000 0.00 0.00 37.11 2.74
293 306 8.818141 TGCAATCATAGCTACTAGTAATTGTC 57.182 34.615 17.72 12.87 0.00 3.18
321 334 7.141758 ACTATCATTGGACCATGAACATAGT 57.858 36.000 0.00 4.40 0.00 2.12
362 377 5.163488 CCTTGATTTTCTCATGCATGGCTTA 60.163 40.000 25.97 6.24 32.72 3.09
443 458 1.123928 CTGGACAGTGGTATCCCCTC 58.876 60.000 0.00 0.00 33.69 4.30
446 461 0.326238 GACAGTGGTATCCCCTCCCA 60.326 60.000 0.00 0.00 0.00 4.37
448 463 1.275002 ACAGTGGTATCCCCTCCCAAT 60.275 52.381 0.00 0.00 0.00 3.16
449 464 2.021441 ACAGTGGTATCCCCTCCCAATA 60.021 50.000 0.00 0.00 0.00 1.90
450 465 2.639839 CAGTGGTATCCCCTCCCAATAG 59.360 54.545 0.00 0.00 0.00 1.73
530 546 2.422597 TCAGCCATGTTCGTTTAGTGG 58.577 47.619 0.00 0.00 0.00 4.00
611 627 3.074999 GCTGGCTCAGTCTCTCGGG 62.075 68.421 4.45 0.00 33.43 5.14
623 658 0.108804 CTCTCGGGTATGCGTGTGTT 60.109 55.000 0.00 0.00 0.00 3.32
641 676 7.619776 GCGTGTGTTCGTTCATAAATGTAAGTA 60.620 37.037 0.00 0.00 0.00 2.24
722 759 1.284198 ACTAGCTAGAACCTCCACGGA 59.716 52.381 27.45 0.00 36.31 4.69
803 867 3.018856 ACGGTGGTGTCGTCAGATATAA 58.981 45.455 0.00 0.00 35.87 0.98
927 991 5.471257 GTTTAACACAAACACAAACCCTCA 58.529 37.500 0.00 0.00 0.00 3.86
941 1005 1.693083 CCCTCAAACGGCGAATCGAC 61.693 60.000 16.62 1.05 0.00 4.20
953 1020 2.349438 GCGAATCGACTGCTTTTGAACA 60.349 45.455 6.91 0.00 0.00 3.18
996 1069 5.219633 GCTATCGATTCTCTTGGTCTCTTC 58.780 45.833 1.71 0.00 0.00 2.87
1031 1104 3.781307 CGCCAACCCCGAGATGGA 61.781 66.667 6.00 0.00 42.00 3.41
1032 1105 2.190578 GCCAACCCCGAGATGGAG 59.809 66.667 6.00 0.00 42.00 3.86
1033 1106 2.367202 GCCAACCCCGAGATGGAGA 61.367 63.158 6.00 0.00 42.00 3.71
1040 1116 1.834263 CCCCGAGATGGAGAAGAAGTT 59.166 52.381 0.00 0.00 42.00 2.66
1087 1163 3.680786 CCGAGACGGCAGTGGACA 61.681 66.667 0.00 0.00 41.17 4.02
1103 1179 4.021016 AGTGGACACATACCAGAAGAAGAC 60.021 45.833 5.14 0.00 38.14 3.01
1188 1264 1.141881 CGACATCCTACTGCGCCTT 59.858 57.895 4.18 0.00 0.00 4.35
1315 1397 2.187946 GCCTGTGCTATGACGGCT 59.812 61.111 0.00 0.00 34.61 5.52
1358 1440 0.394216 TTGGACATGGATTCTGGCCG 60.394 55.000 0.00 0.00 45.50 6.13
1645 1733 2.180432 GCAGCAGATATGCCAGATCA 57.820 50.000 9.09 0.00 37.73 2.92
1694 1782 2.760385 CTGGAGGGAGACGGGGAC 60.760 72.222 0.00 0.00 0.00 4.46
1746 1834 1.281867 CCATGGACTTACAGCAGGGAA 59.718 52.381 5.56 0.00 0.00 3.97
1840 1949 0.523072 CATGGCGTTTGACCTTGGAG 59.477 55.000 0.00 0.00 0.00 3.86
2121 2233 1.377072 CATGTGGATGCGGGTGACA 60.377 57.895 0.00 0.00 0.00 3.58
2174 2286 2.008045 GCTGCGGTATTACGACCCAAA 61.008 52.381 0.00 0.00 35.95 3.28
2193 2305 2.683211 AAACCAGGGCTTTCACAGAT 57.317 45.000 0.00 0.00 0.00 2.90
2292 2404 3.057315 GGAGAGCTGCATTAGAGAGCTAG 60.057 52.174 1.02 0.00 43.18 3.42
2361 2590 3.821841 CGTCCACCAATAAGAAACTTGC 58.178 45.455 0.00 0.00 0.00 4.01
2367 2596 6.027749 CCACCAATAAGAAACTTGCGTAATC 58.972 40.000 0.00 0.00 0.00 1.75
2549 2778 9.896645 TCTCTAATTAGCAGATGAAGACAAAAT 57.103 29.630 7.67 0.00 0.00 1.82
2553 2782 7.692460 ATTAGCAGATGAAGACAAAATCACA 57.308 32.000 0.00 0.00 0.00 3.58
2615 2844 2.819608 CCAAATTTGGGACGATCACAGT 59.180 45.455 26.87 0.00 44.70 3.55
2616 2845 4.006989 CCAAATTTGGGACGATCACAGTA 58.993 43.478 26.87 0.00 44.70 2.74
2642 2871 6.151663 TCCGTCCGATTCATCTATTTACAA 57.848 37.500 0.00 0.00 0.00 2.41
2648 2877 6.645003 TCCGATTCATCTATTTACAACCATCG 59.355 38.462 0.00 0.00 0.00 3.84
2661 2890 2.502492 CCATCGGATCTGACGCCCT 61.502 63.158 6.33 0.00 0.00 5.19
2719 2949 4.899239 CGCAGAGCATCGACCCCC 62.899 72.222 0.00 0.00 42.67 5.40
2722 2952 2.835431 AGAGCATCGACCCCCTCG 60.835 66.667 0.00 0.00 42.67 4.63
2807 3041 1.671979 CGTCAGGATTGCATCATGGT 58.328 50.000 9.73 0.00 41.13 3.55
2884 3120 2.048127 GTTCCAGCTCGCGGTTCT 60.048 61.111 6.13 0.00 0.00 3.01
2906 3142 4.380945 GGTTCCAGCATGCCCCCA 62.381 66.667 15.66 0.00 31.97 4.96
2909 3145 3.157733 TTCCAGCATGCCCCCAACA 62.158 57.895 15.66 0.00 31.97 3.33
2953 3189 0.804364 CTTTGGCTTGCATCGTGCTA 59.196 50.000 10.54 3.48 45.31 3.49
2962 3198 2.431454 TGCATCGTGCTATCCAACAAA 58.569 42.857 10.54 0.00 45.31 2.83
2997 3234 5.675684 ACAAACAAAATCCTCAAGTGGTT 57.324 34.783 0.00 0.00 0.00 3.67
2998 3235 6.783708 ACAAACAAAATCCTCAAGTGGTTA 57.216 33.333 0.00 0.00 0.00 2.85
3043 3280 4.705023 GGTTCCAGCAAATAAAGGCTCTAA 59.295 41.667 0.00 0.00 38.56 2.10
3062 3299 6.870439 GCTCTAATTCCAGCAAAACAAATTCT 59.130 34.615 4.09 0.00 35.56 2.40
3148 3395 4.057432 TCCAGCAAAAGCAAATTTAGCAC 58.943 39.130 12.88 0.00 0.00 4.40
3178 3425 3.334691 TCCAAGGTCGATTGTAGCAAAG 58.665 45.455 0.00 0.00 0.00 2.77
3220 3470 4.404073 AGCAAAATAATATGCCGGTTCCAA 59.596 37.500 1.90 0.00 43.57 3.53
3226 3476 3.866883 ATATGCCGGTTCCAACAAAAG 57.133 42.857 1.90 0.00 0.00 2.27
3242 3492 0.174617 AAAGCACAAAACCGGTGGTG 59.825 50.000 22.95 22.95 45.37 4.17
3245 3495 2.835895 ACAAAACCGGTGGTGGCC 60.836 61.111 8.52 0.00 35.34 5.36
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 40 5.688814 TGTCTCCTTGTGATGATTCTCAT 57.311 39.130 0.00 0.00 40.34 2.90
40 41 5.485620 CTTGTCTCCTTGTGATGATTCTCA 58.514 41.667 0.00 0.00 0.00 3.27
73 74 0.591659 GACCCTCGAACAGGTTTTGC 59.408 55.000 3.20 0.00 41.51 3.68
74 75 1.235724 GGACCCTCGAACAGGTTTTG 58.764 55.000 3.20 0.00 41.51 2.44
79 80 2.663196 GGTGGACCCTCGAACAGG 59.337 66.667 0.00 0.00 43.01 4.00
120 122 2.461110 CCGGATGAGTTTTCGGCCG 61.461 63.158 22.12 22.12 40.33 6.13
218 220 6.688813 GCTTGGCTCTTTATTTTGTATCTTCG 59.311 38.462 0.00 0.00 0.00 3.79
223 225 8.313292 TGAATTGCTTGGCTCTTTATTTTGTAT 58.687 29.630 0.00 0.00 0.00 2.29
293 306 5.418524 TGTTCATGGTCCAATGATAGTTTGG 59.581 40.000 0.00 0.00 44.14 3.28
362 377 2.270352 TTTTCCCGACAGTTGCTCAT 57.730 45.000 0.00 0.00 0.00 2.90
387 402 4.975502 CACAGATTCATTCGTAGAGAGAGC 59.024 45.833 0.00 0.00 38.43 4.09
388 403 5.067153 ACCACAGATTCATTCGTAGAGAGAG 59.933 44.000 0.00 0.00 38.43 3.20
462 478 6.048732 TCAGAGCACCAATGTCAAGTATAA 57.951 37.500 0.00 0.00 0.00 0.98
512 528 1.349688 TCCCACTAAACGAACATGGCT 59.650 47.619 0.00 0.00 0.00 4.75
548 564 1.700955 ACCACAGGTGTCTCGTACTT 58.299 50.000 0.00 0.00 32.98 2.24
611 627 4.571375 TTATGAACGAACACACGCATAC 57.429 40.909 0.00 0.00 36.70 2.39
623 658 9.974980 TGAGCATATACTTACATTTATGAACGA 57.025 29.630 0.00 0.00 0.00 3.85
641 676 4.041321 AGTGGCTGACATACATGAGCATAT 59.959 41.667 0.00 0.00 31.42 1.78
698 735 2.617774 GTGGAGGTTCTAGCTAGTACGG 59.382 54.545 20.10 0.00 0.00 4.02
880 944 1.286501 TGAATATGTTCAGCGCCGTC 58.713 50.000 2.29 0.00 39.36 4.79
927 991 0.949105 AAGCAGTCGATTCGCCGTTT 60.949 50.000 0.00 0.00 0.00 3.60
941 1005 2.474526 CCGATAGCGTGTTCAAAAGCAG 60.475 50.000 0.00 0.00 35.23 4.24
970 1042 3.003897 AGACCAAGAGAATCGATAGCGTC 59.996 47.826 0.00 0.00 42.67 5.19
1031 1104 1.911766 TCGGCCGGGAACTTCTTCT 60.912 57.895 27.83 0.00 0.00 2.85
1032 1105 1.740664 GTCGGCCGGGAACTTCTTC 60.741 63.158 27.83 0.00 0.00 2.87
1033 1106 2.346365 GTCGGCCGGGAACTTCTT 59.654 61.111 27.83 0.00 0.00 2.52
1087 1163 2.761208 CCTCCGTCTTCTTCTGGTATGT 59.239 50.000 0.00 0.00 0.00 2.29
1188 1264 3.059982 CAGACCGACTTGGCAGGA 58.940 61.111 2.65 0.00 43.94 3.86
1306 1388 1.363807 CATCGCCAGAGCCGTCATA 59.636 57.895 0.00 0.00 34.57 2.15
1358 1440 4.373116 TCACCCGCTTGAGGACGC 62.373 66.667 0.00 0.00 0.00 5.19
1374 1456 0.166814 GGCTTGTGACGTCAATGCTC 59.833 55.000 21.95 8.07 0.00 4.26
1639 1727 2.967599 TCGTTGAGGGTGATGATCTG 57.032 50.000 0.00 0.00 0.00 2.90
1645 1733 2.806745 CGCCATTATCGTTGAGGGTGAT 60.807 50.000 0.00 0.00 0.00 3.06
1694 1782 0.988832 TAGCAAACTGTACCCTGGGG 59.011 55.000 18.88 7.87 42.03 4.96
1746 1834 3.374402 CCCTCGACCACAGCGACT 61.374 66.667 0.00 0.00 33.71 4.18
1840 1949 3.357079 CGGCTGCCACACCTTGTC 61.357 66.667 20.29 0.00 0.00 3.18
2121 2233 1.975407 GATGCTGCAGCCTGTTGGT 60.975 57.895 34.64 12.33 41.18 3.67
2174 2286 2.242043 CATCTGTGAAAGCCCTGGTTT 58.758 47.619 0.00 0.00 35.90 3.27
2361 2590 2.418746 CCCAGACACCCTTCAGATTACG 60.419 54.545 0.00 0.00 0.00 3.18
2367 2596 1.339151 GCTAACCCAGACACCCTTCAG 60.339 57.143 0.00 0.00 0.00 3.02
2526 2755 9.713740 GTGATTTTGTCTTCATCTGCTAATTAG 57.286 33.333 8.20 8.20 0.00 1.73
2549 2778 4.344679 ACTGGCCTTTCAATTTTCATGTGA 59.655 37.500 3.32 0.00 0.00 3.58
2553 2782 5.750352 ATCACTGGCCTTTCAATTTTCAT 57.250 34.783 3.32 0.00 0.00 2.57
2605 2834 1.404391 GGACGGATGTACTGTGATCGT 59.596 52.381 0.00 0.00 38.34 3.73
2608 2837 1.758936 TCGGACGGATGTACTGTGAT 58.241 50.000 0.00 0.00 38.34 3.06
2611 2840 2.097036 TGAATCGGACGGATGTACTGT 58.903 47.619 0.00 0.00 41.27 3.55
2615 2844 5.977489 AATAGATGAATCGGACGGATGTA 57.023 39.130 0.00 0.00 34.93 2.29
2616 2845 4.873746 AATAGATGAATCGGACGGATGT 57.126 40.909 0.00 0.00 34.93 3.06
2642 2871 2.797278 GGGCGTCAGATCCGATGGT 61.797 63.158 0.42 0.00 0.00 3.55
2648 2877 0.755698 TGTAGGAGGGCGTCAGATCC 60.756 60.000 9.66 0.00 0.00 3.36
2661 2890 2.041350 AGGGAAGAAGACGACTGTAGGA 59.959 50.000 0.00 0.00 0.00 2.94
2755 2985 4.719369 GCGTCGGAGCTCGTTGGT 62.719 66.667 7.83 0.00 40.32 3.67
2758 2988 4.755614 GACGCGTCGGAGCTCGTT 62.756 66.667 25.19 0.00 40.32 3.85
2792 3026 0.820891 GGCGACCATGATGCAATCCT 60.821 55.000 0.00 0.00 44.73 3.24
2829 3064 0.179215 CTGCAATCCTTCGTTGACGC 60.179 55.000 0.00 0.00 39.60 5.19
2830 3065 0.179215 GCTGCAATCCTTCGTTGACG 60.179 55.000 0.00 0.00 41.45 4.35
2864 3100 3.469863 AACCGCGAGCTGGAACCAA 62.470 57.895 8.23 0.00 0.00 3.67
2884 3120 1.380246 GGCATGCTGGAACCATGGA 60.380 57.895 21.47 0.00 40.24 3.41
2966 3202 8.839310 TTGAGGATTTTGTTTGTTTTCAGAAA 57.161 26.923 0.00 0.00 0.00 2.52
3032 3269 5.772672 TGTTTTGCTGGAATTAGAGCCTTTA 59.227 36.000 5.87 0.00 34.04 1.85
3043 3280 7.288810 TCTACAGAATTTGTTTTGCTGGAAT 57.711 32.000 0.00 0.00 41.29 3.01
3220 3470 1.404851 CCACCGGTTTTGTGCTTTTGT 60.405 47.619 2.97 0.00 32.30 2.83
3226 3476 2.415426 CCACCACCGGTTTTGTGC 59.585 61.111 18.73 0.00 31.02 4.57
3242 3492 2.110578 ACTTGCCTCCATATTTTGGCC 58.889 47.619 0.00 0.00 46.01 5.36
3265 3519 4.320348 GCATCCTGCATCTATTTCTTCTGC 60.320 45.833 0.00 0.00 44.26 4.26



Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.