AutoCloner

Multiple sequence alignment - TraesCS5B01G534500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS5B01G534500	chr5B	100.000	3293	0	0	1	3293	690900635	690903927	0.000000e+00	6082.0
1	TraesCS5B01G534500	chr5B	79.026	739	133	7	1141	1861	690877769	690878503	1.370000e-133	486.0
2	TraesCS5B01G534500	chrUn	90.708	2303	120	36	62	2292	68523355	68521075	0.000000e+00	2981.0
3	TraesCS5B01G534500	chrUn	79.904	831	126	25	1141	1939	365280831	365281652	3.690000e-159	571.0
4	TraesCS5B01G534500	chrUn	79.952	828	125	25	1144	1939	385928226	385927408	3.690000e-159	571.0
5	TraesCS5B01G534500	chrUn	79.952	828	125	25	1144	1939	385946926	385946108	3.690000e-159	571.0
6	TraesCS5B01G534500	chrUn	79.904	831	126	25	1141	1939	434364217	434365038	3.690000e-159	571.0
7	TraesCS5B01G534500	chrUn	92.430	251	13	2	2316	2566	68520934	68520690	1.450000e-93	353.0
8	TraesCS5B01G534500	chrUn	97.222	36	1	0	1	36	68523389	68523354	9.870000e-06	62.1
9	TraesCS5B01G534500	chr5D	90.294	2009	104	45	62	2000	547616905	547614918	0.000000e+00	2545.0
10	TraesCS5B01G534500	chr5D	88.869	548	37	11	2029	2566	547614919	547614386	0.000000e+00	652.0
11	TraesCS5B01G534500	chr5D	97.222	36	1	0	1	36	547616939	547616904	9.870000e-06	62.1
12	TraesCS5B01G534500	chr4A	91.751	1867	98	24	7	1827	621572563	621570707	0.000000e+00	2543.0
13	TraesCS5B01G534500	chr4A	95.652	437	15	2	1868	2301	621570712	621570277	0.000000e+00	699.0
14	TraesCS5B01G534500	chr4A	87.045	247	25	6	2316	2561	621570227	621569987	4.190000e-69	272.0
15	TraesCS5B01G534500	chr4A	81.053	95	18	0	408	502	124407125	124407031	3.520000e-10	76.8
16	TraesCS5B01G534500	chr6B	87.619	735	77	10	2567	3293	254722	255450	0.000000e+00	841.0
17	TraesCS5B01G534500	chr4B	87.246	737	79	11	2566	3293	657293320	657294050	0.000000e+00	826.0
18	TraesCS5B01G534500	chr3B	87.079	743	77	13	2564	3293	114607663	114606927	0.000000e+00	822.0
19	TraesCS5B01G534500	chr7D	85.653	704	83	9	2603	3293	7456579	7457277	0.000000e+00	725.0
20	TraesCS5B01G534500	chr7D	83.688	141	21	2	467	605	99192912	99192772	7.410000e-27	132.0
21	TraesCS5B01G534500	chr3A	83.827	742	102	14	2565	3293	75623245	75623981	0.000000e+00	689.0
22	TraesCS5B01G534500	chr7B	91.954	174	10	3	3068	3240	444169993	444169823	1.180000e-59	241.0
23	TraesCS5B01G534500	chr2A	91.379	174	11	3	3068	3240	1634725	1634555	5.490000e-58	235.0
24	TraesCS5B01G534500	chr7A	79.358	218	38	7	398	611	93496590	93496804	2.650000e-31	147.0
25	TraesCS5B01G534500	chr7A	93.182	44	2	1	400	442	733454612	733454569	2.740000e-06	63.9
26	TraesCS5B01G534500	chr1A	78.607	201	35	8	415	610	550139557	550139360	3.450000e-25	126.0
27	TraesCS5B01G534500	chr2B	79.630	162	26	7	453	610	741898152	741898310	3.470000e-20	110.0

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS5B01G534500	chr5B	690900635	690903927	3292	False	6082.000000	6082	100.000000	1	3293	1	chr5B.!!$F2	3292
1	TraesCS5B01G534500	chr5B	690877769	690878503	734	False	486.000000	486	79.026000	1141	1861	1	chr5B.!!$F1	720
2	TraesCS5B01G534500	chrUn	68520690	68523389	2699	True	1132.033333	2981	93.453333	1	2566	3	chrUn.!!$R3	2565
3	TraesCS5B01G534500	chrUn	365280831	365281652	821	False	571.000000	571	79.904000	1141	1939	1	chrUn.!!$F1	798
4	TraesCS5B01G534500	chrUn	385927408	385928226	818	True	571.000000	571	79.952000	1144	1939	1	chrUn.!!$R1	795
5	TraesCS5B01G534500	chrUn	385946108	385946926	818	True	571.000000	571	79.952000	1144	1939	1	chrUn.!!$R2	795
6	TraesCS5B01G534500	chrUn	434364217	434365038	821	False	571.000000	571	79.904000	1141	1939	1	chrUn.!!$F2	798
7	TraesCS5B01G534500	chr5D	547614386	547616939	2553	True	1086.366667	2545	92.128333	1	2566	3	chr5D.!!$R1	2565
8	TraesCS5B01G534500	chr4A	621569987	621572563	2576	True	1171.333333	2543	91.482667	7	2561	3	chr4A.!!$R2	2554
9	TraesCS5B01G534500	chr6B	254722	255450	728	False	841.000000	841	87.619000	2567	3293	1	chr6B.!!$F1	726
10	TraesCS5B01G534500	chr4B	657293320	657294050	730	False	826.000000	826	87.246000	2566	3293	1	chr4B.!!$F1	727
11	TraesCS5B01G534500	chr3B	114606927	114607663	736	True	822.000000	822	87.079000	2564	3293	1	chr3B.!!$R1	729
12	TraesCS5B01G534500	chr7D	7456579	7457277	698	False	725.000000	725	85.653000	2603	3293	1	chr7D.!!$F1	690
13	TraesCS5B01G534500	chr3A	75623245	75623981	736	False	689.000000	689	83.827000	2565	3293	1	chr3A.!!$F1	728

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
623	658	0.108804	CTCTCGGGTATGCGTGTGTT	60.109	55.0	0.0	0.0	0.0	3.32	F
1358	1440	0.394216	TTGGACATGGATTCTGGCCG	60.394	55.0	0.0	0.0	45.5	6.13	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1694	1782	0.988832	TAGCAAACTGTACCCTGGGG	59.011	55.0	18.88	7.87	42.03	4.96	R
2829	3064	0.179215	CTGCAATCCTTCGTTGACGC	60.179	55.0	0.00	0.00	39.60	5.19	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
39	40	0.796312	GCGCTTGAAGAACGAATGGA	59.204	50.000	0.00	0.00	0.00	3.41
40	41	1.398390	GCGCTTGAAGAACGAATGGAT	59.602	47.619	0.00	0.00	0.00	3.41
73	74	3.181439	ACAAGGAGACAAGGGAAAAGAGG	60.181	47.826	0.00	0.00	0.00	3.69
74	75	1.352687	AGGAGACAAGGGAAAAGAGGC	59.647	52.381	0.00	0.00	0.00	4.70
79	80	3.384789	AGACAAGGGAAAAGAGGCAAAAC	59.615	43.478	0.00	0.00	0.00	2.43
165	167	5.005779	GCTTGACACGATCATTTACCTAGTG	59.994	44.000	0.00	0.00	37.11	2.74
293	306	8.818141	TGCAATCATAGCTACTAGTAATTGTC	57.182	34.615	17.72	12.87	0.00	3.18
321	334	7.141758	ACTATCATTGGACCATGAACATAGT	57.858	36.000	0.00	4.40	0.00	2.12
362	377	5.163488	CCTTGATTTTCTCATGCATGGCTTA	60.163	40.000	25.97	6.24	32.72	3.09
443	458	1.123928	CTGGACAGTGGTATCCCCTC	58.876	60.000	0.00	0.00	33.69	4.30
446	461	0.326238	GACAGTGGTATCCCCTCCCA	60.326	60.000	0.00	0.00	0.00	4.37
448	463	1.275002	ACAGTGGTATCCCCTCCCAAT	60.275	52.381	0.00	0.00	0.00	3.16
449	464	2.021441	ACAGTGGTATCCCCTCCCAATA	60.021	50.000	0.00	0.00	0.00	1.90
450	465	2.639839	CAGTGGTATCCCCTCCCAATAG	59.360	54.545	0.00	0.00	0.00	1.73
530	546	2.422597	TCAGCCATGTTCGTTTAGTGG	58.577	47.619	0.00	0.00	0.00	4.00
611	627	3.074999	GCTGGCTCAGTCTCTCGGG	62.075	68.421	4.45	0.00	33.43	5.14
623	658	0.108804	CTCTCGGGTATGCGTGTGTT	60.109	55.000	0.00	0.00	0.00	3.32
641	676	7.619776	GCGTGTGTTCGTTCATAAATGTAAGTA	60.620	37.037	0.00	0.00	0.00	2.24
722	759	1.284198	ACTAGCTAGAACCTCCACGGA	59.716	52.381	27.45	0.00	36.31	4.69
803	867	3.018856	ACGGTGGTGTCGTCAGATATAA	58.981	45.455	0.00	0.00	35.87	0.98
927	991	5.471257	GTTTAACACAAACACAAACCCTCA	58.529	37.500	0.00	0.00	0.00	3.86
941	1005	1.693083	CCCTCAAACGGCGAATCGAC	61.693	60.000	16.62	1.05	0.00	4.20
953	1020	2.349438	GCGAATCGACTGCTTTTGAACA	60.349	45.455	6.91	0.00	0.00	3.18
996	1069	5.219633	GCTATCGATTCTCTTGGTCTCTTC	58.780	45.833	1.71	0.00	0.00	2.87
1031	1104	3.781307	CGCCAACCCCGAGATGGA	61.781	66.667	6.00	0.00	42.00	3.41
1032	1105	2.190578	GCCAACCCCGAGATGGAG	59.809	66.667	6.00	0.00	42.00	3.86
1033	1106	2.367202	GCCAACCCCGAGATGGAGA	61.367	63.158	6.00	0.00	42.00	3.71
1040	1116	1.834263	CCCCGAGATGGAGAAGAAGTT	59.166	52.381	0.00	0.00	42.00	2.66
1087	1163	3.680786	CCGAGACGGCAGTGGACA	61.681	66.667	0.00	0.00	41.17	4.02
1103	1179	4.021016	AGTGGACACATACCAGAAGAAGAC	60.021	45.833	5.14	0.00	38.14	3.01
1188	1264	1.141881	CGACATCCTACTGCGCCTT	59.858	57.895	4.18	0.00	0.00	4.35
1315	1397	2.187946	GCCTGTGCTATGACGGCT	59.812	61.111	0.00	0.00	34.61	5.52
1358	1440	0.394216	TTGGACATGGATTCTGGCCG	60.394	55.000	0.00	0.00	45.50	6.13
1645	1733	2.180432	GCAGCAGATATGCCAGATCA	57.820	50.000	9.09	0.00	37.73	2.92
1694	1782	2.760385	CTGGAGGGAGACGGGGAC	60.760	72.222	0.00	0.00	0.00	4.46
1746	1834	1.281867	CCATGGACTTACAGCAGGGAA	59.718	52.381	5.56	0.00	0.00	3.97
1840	1949	0.523072	CATGGCGTTTGACCTTGGAG	59.477	55.000	0.00	0.00	0.00	3.86
2121	2233	1.377072	CATGTGGATGCGGGTGACA	60.377	57.895	0.00	0.00	0.00	3.58
2174	2286	2.008045	GCTGCGGTATTACGACCCAAA	61.008	52.381	0.00	0.00	35.95	3.28
2193	2305	2.683211	AAACCAGGGCTTTCACAGAT	57.317	45.000	0.00	0.00	0.00	2.90
2292	2404	3.057315	GGAGAGCTGCATTAGAGAGCTAG	60.057	52.174	1.02	0.00	43.18	3.42
2361	2590	3.821841	CGTCCACCAATAAGAAACTTGC	58.178	45.455	0.00	0.00	0.00	4.01
2367	2596	6.027749	CCACCAATAAGAAACTTGCGTAATC	58.972	40.000	0.00	0.00	0.00	1.75
2549	2778	9.896645	TCTCTAATTAGCAGATGAAGACAAAAT	57.103	29.630	7.67	0.00	0.00	1.82
2553	2782	7.692460	ATTAGCAGATGAAGACAAAATCACA	57.308	32.000	0.00	0.00	0.00	3.58
2615	2844	2.819608	CCAAATTTGGGACGATCACAGT	59.180	45.455	26.87	0.00	44.70	3.55
2616	2845	4.006989	CCAAATTTGGGACGATCACAGTA	58.993	43.478	26.87	0.00	44.70	2.74
2642	2871	6.151663	TCCGTCCGATTCATCTATTTACAA	57.848	37.500	0.00	0.00	0.00	2.41
2648	2877	6.645003	TCCGATTCATCTATTTACAACCATCG	59.355	38.462	0.00	0.00	0.00	3.84
2661	2890	2.502492	CCATCGGATCTGACGCCCT	61.502	63.158	6.33	0.00	0.00	5.19
2719	2949	4.899239	CGCAGAGCATCGACCCCC	62.899	72.222	0.00	0.00	42.67	5.40
2722	2952	2.835431	AGAGCATCGACCCCCTCG	60.835	66.667	0.00	0.00	42.67	4.63
2807	3041	1.671979	CGTCAGGATTGCATCATGGT	58.328	50.000	9.73	0.00	41.13	3.55
2884	3120	2.048127	GTTCCAGCTCGCGGTTCT	60.048	61.111	6.13	0.00	0.00	3.01
2906	3142	4.380945	GGTTCCAGCATGCCCCCA	62.381	66.667	15.66	0.00	31.97	4.96
2909	3145	3.157733	TTCCAGCATGCCCCCAACA	62.158	57.895	15.66	0.00	31.97	3.33
2953	3189	0.804364	CTTTGGCTTGCATCGTGCTA	59.196	50.000	10.54	3.48	45.31	3.49
2962	3198	2.431454	TGCATCGTGCTATCCAACAAA	58.569	42.857	10.54	0.00	45.31	2.83
2997	3234	5.675684	ACAAACAAAATCCTCAAGTGGTT	57.324	34.783	0.00	0.00	0.00	3.67
2998	3235	6.783708	ACAAACAAAATCCTCAAGTGGTTA	57.216	33.333	0.00	0.00	0.00	2.85
3043	3280	4.705023	GGTTCCAGCAAATAAAGGCTCTAA	59.295	41.667	0.00	0.00	38.56	2.10
3062	3299	6.870439	GCTCTAATTCCAGCAAAACAAATTCT	59.130	34.615	4.09	0.00	35.56	2.40
3148	3395	4.057432	TCCAGCAAAAGCAAATTTAGCAC	58.943	39.130	12.88	0.00	0.00	4.40
3178	3425	3.334691	TCCAAGGTCGATTGTAGCAAAG	58.665	45.455	0.00	0.00	0.00	2.77
3220	3470	4.404073	AGCAAAATAATATGCCGGTTCCAA	59.596	37.500	1.90	0.00	43.57	3.53
3226	3476	3.866883	ATATGCCGGTTCCAACAAAAG	57.133	42.857	1.90	0.00	0.00	2.27
3242	3492	0.174617	AAAGCACAAAACCGGTGGTG	59.825	50.000	22.95	22.95	45.37	4.17
3245	3495	2.835895	ACAAAACCGGTGGTGGCC	60.836	61.111	8.52	0.00	35.34	5.36

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
39	40	5.688814	TGTCTCCTTGTGATGATTCTCAT	57.311	39.130	0.00	0.00	40.34	2.90
40	41	5.485620	CTTGTCTCCTTGTGATGATTCTCA	58.514	41.667	0.00	0.00	0.00	3.27
73	74	0.591659	GACCCTCGAACAGGTTTTGC	59.408	55.000	3.20	0.00	41.51	3.68
74	75	1.235724	GGACCCTCGAACAGGTTTTG	58.764	55.000	3.20	0.00	41.51	2.44
79	80	2.663196	GGTGGACCCTCGAACAGG	59.337	66.667	0.00	0.00	43.01	4.00
120	122	2.461110	CCGGATGAGTTTTCGGCCG	61.461	63.158	22.12	22.12	40.33	6.13
218	220	6.688813	GCTTGGCTCTTTATTTTGTATCTTCG	59.311	38.462	0.00	0.00	0.00	3.79
223	225	8.313292	TGAATTGCTTGGCTCTTTATTTTGTAT	58.687	29.630	0.00	0.00	0.00	2.29
293	306	5.418524	TGTTCATGGTCCAATGATAGTTTGG	59.581	40.000	0.00	0.00	44.14	3.28
362	377	2.270352	TTTTCCCGACAGTTGCTCAT	57.730	45.000	0.00	0.00	0.00	2.90
387	402	4.975502	CACAGATTCATTCGTAGAGAGAGC	59.024	45.833	0.00	0.00	38.43	4.09
388	403	5.067153	ACCACAGATTCATTCGTAGAGAGAG	59.933	44.000	0.00	0.00	38.43	3.20
462	478	6.048732	TCAGAGCACCAATGTCAAGTATAA	57.951	37.500	0.00	0.00	0.00	0.98
512	528	1.349688	TCCCACTAAACGAACATGGCT	59.650	47.619	0.00	0.00	0.00	4.75
548	564	1.700955	ACCACAGGTGTCTCGTACTT	58.299	50.000	0.00	0.00	32.98	2.24
611	627	4.571375	TTATGAACGAACACACGCATAC	57.429	40.909	0.00	0.00	36.70	2.39
623	658	9.974980	TGAGCATATACTTACATTTATGAACGA	57.025	29.630	0.00	0.00	0.00	3.85
641	676	4.041321	AGTGGCTGACATACATGAGCATAT	59.959	41.667	0.00	0.00	31.42	1.78
698	735	2.617774	GTGGAGGTTCTAGCTAGTACGG	59.382	54.545	20.10	0.00	0.00	4.02
880	944	1.286501	TGAATATGTTCAGCGCCGTC	58.713	50.000	2.29	0.00	39.36	4.79
927	991	0.949105	AAGCAGTCGATTCGCCGTTT	60.949	50.000	0.00	0.00	0.00	3.60
941	1005	2.474526	CCGATAGCGTGTTCAAAAGCAG	60.475	50.000	0.00	0.00	35.23	4.24
970	1042	3.003897	AGACCAAGAGAATCGATAGCGTC	59.996	47.826	0.00	0.00	42.67	5.19
1031	1104	1.911766	TCGGCCGGGAACTTCTTCT	60.912	57.895	27.83	0.00	0.00	2.85
1032	1105	1.740664	GTCGGCCGGGAACTTCTTC	60.741	63.158	27.83	0.00	0.00	2.87
1033	1106	2.346365	GTCGGCCGGGAACTTCTT	59.654	61.111	27.83	0.00	0.00	2.52
1087	1163	2.761208	CCTCCGTCTTCTTCTGGTATGT	59.239	50.000	0.00	0.00	0.00	2.29
1188	1264	3.059982	CAGACCGACTTGGCAGGA	58.940	61.111	2.65	0.00	43.94	3.86
1306	1388	1.363807	CATCGCCAGAGCCGTCATA	59.636	57.895	0.00	0.00	34.57	2.15
1358	1440	4.373116	TCACCCGCTTGAGGACGC	62.373	66.667	0.00	0.00	0.00	5.19
1374	1456	0.166814	GGCTTGTGACGTCAATGCTC	59.833	55.000	21.95	8.07	0.00	4.26
1639	1727	2.967599	TCGTTGAGGGTGATGATCTG	57.032	50.000	0.00	0.00	0.00	2.90
1645	1733	2.806745	CGCCATTATCGTTGAGGGTGAT	60.807	50.000	0.00	0.00	0.00	3.06
1694	1782	0.988832	TAGCAAACTGTACCCTGGGG	59.011	55.000	18.88	7.87	42.03	4.96
1746	1834	3.374402	CCCTCGACCACAGCGACT	61.374	66.667	0.00	0.00	33.71	4.18
1840	1949	3.357079	CGGCTGCCACACCTTGTC	61.357	66.667	20.29	0.00	0.00	3.18
2121	2233	1.975407	GATGCTGCAGCCTGTTGGT	60.975	57.895	34.64	12.33	41.18	3.67
2174	2286	2.242043	CATCTGTGAAAGCCCTGGTTT	58.758	47.619	0.00	0.00	35.90	3.27
2361	2590	2.418746	CCCAGACACCCTTCAGATTACG	60.419	54.545	0.00	0.00	0.00	3.18
2367	2596	1.339151	GCTAACCCAGACACCCTTCAG	60.339	57.143	0.00	0.00	0.00	3.02
2526	2755	9.713740	GTGATTTTGTCTTCATCTGCTAATTAG	57.286	33.333	8.20	8.20	0.00	1.73
2549	2778	4.344679	ACTGGCCTTTCAATTTTCATGTGA	59.655	37.500	3.32	0.00	0.00	3.58
2553	2782	5.750352	ATCACTGGCCTTTCAATTTTCAT	57.250	34.783	3.32	0.00	0.00	2.57
2605	2834	1.404391	GGACGGATGTACTGTGATCGT	59.596	52.381	0.00	0.00	38.34	3.73
2608	2837	1.758936	TCGGACGGATGTACTGTGAT	58.241	50.000	0.00	0.00	38.34	3.06
2611	2840	2.097036	TGAATCGGACGGATGTACTGT	58.903	47.619	0.00	0.00	41.27	3.55
2615	2844	5.977489	AATAGATGAATCGGACGGATGTA	57.023	39.130	0.00	0.00	34.93	2.29
2616	2845	4.873746	AATAGATGAATCGGACGGATGT	57.126	40.909	0.00	0.00	34.93	3.06
2642	2871	2.797278	GGGCGTCAGATCCGATGGT	61.797	63.158	0.42	0.00	0.00	3.55
2648	2877	0.755698	TGTAGGAGGGCGTCAGATCC	60.756	60.000	9.66	0.00	0.00	3.36
2661	2890	2.041350	AGGGAAGAAGACGACTGTAGGA	59.959	50.000	0.00	0.00	0.00	2.94
2755	2985	4.719369	GCGTCGGAGCTCGTTGGT	62.719	66.667	7.83	0.00	40.32	3.67
2758	2988	4.755614	GACGCGTCGGAGCTCGTT	62.756	66.667	25.19	0.00	40.32	3.85
2792	3026	0.820891	GGCGACCATGATGCAATCCT	60.821	55.000	0.00	0.00	44.73	3.24
2829	3064	0.179215	CTGCAATCCTTCGTTGACGC	60.179	55.000	0.00	0.00	39.60	5.19
2830	3065	0.179215	GCTGCAATCCTTCGTTGACG	60.179	55.000	0.00	0.00	41.45	4.35
2864	3100	3.469863	AACCGCGAGCTGGAACCAA	62.470	57.895	8.23	0.00	0.00	3.67
2884	3120	1.380246	GGCATGCTGGAACCATGGA	60.380	57.895	21.47	0.00	40.24	3.41
2966	3202	8.839310	TTGAGGATTTTGTTTGTTTTCAGAAA	57.161	26.923	0.00	0.00	0.00	2.52
3032	3269	5.772672	TGTTTTGCTGGAATTAGAGCCTTTA	59.227	36.000	5.87	0.00	34.04	1.85
3043	3280	7.288810	TCTACAGAATTTGTTTTGCTGGAAT	57.711	32.000	0.00	0.00	41.29	3.01
3220	3470	1.404851	CCACCGGTTTTGTGCTTTTGT	60.405	47.619	2.97	0.00	32.30	2.83
3226	3476	2.415426	CCACCACCGGTTTTGTGC	59.585	61.111	18.73	0.00	31.02	4.57
3242	3492	2.110578	ACTTGCCTCCATATTTTGGCC	58.889	47.619	0.00	0.00	46.01	5.36
3265	3519	4.320348	GCATCCTGCATCTATTTCTTCTGC	60.320	45.833	0.00	0.00	44.26	4.26

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.