Multiple sequence alignment - TraesCS5B01G534400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G534400 chr5B 100.000 5184 0 0 1 5184 690708003 690702820 0.000000e+00 9574
1 TraesCS5B01G534400 chr5B 82.443 131 13 5 608 736 459173618 459173496 7.100000e-19 106
2 TraesCS5B01G534400 chr4A 93.698 2158 90 12 1857 3985 621661908 621664048 0.000000e+00 3190
3 TraesCS5B01G534400 chr4A 90.976 1219 67 23 629 1827 621660714 621661909 0.000000e+00 1602
4 TraesCS5B01G534400 chr4A 86.936 1064 52 21 4018 5062 621664167 621665162 0.000000e+00 1114
5 TraesCS5B01G534400 chr4A 91.385 325 20 5 116 437 621659413 621659732 6.160000e-119 438
6 TraesCS5B01G534400 chr4A 76.600 500 76 19 2840 3311 622172238 622171752 2.410000e-58 237
7 TraesCS5B01G534400 chr4A 89.655 87 8 1 35 121 621646559 621646644 5.490000e-20 110
8 TraesCS5B01G534400 chr5D 93.218 1902 90 20 2114 3983 547276008 547274114 0.000000e+00 2761
9 TraesCS5B01G534400 chr5D 89.145 2082 135 42 66 2115 547278075 547276053 0.000000e+00 2508
10 TraesCS5B01G534400 chr5D 81.769 735 51 31 4080 4786 547273946 547273267 5.910000e-149 538
11 TraesCS5B01G534400 chr5D 94.937 158 8 0 4791 4948 547273081 547272924 1.110000e-61 248
12 TraesCS5B01G534400 chr5D 82.857 245 36 6 2849 3090 546837642 546837883 1.130000e-51 215
13 TraesCS5B01G534400 chr7A 87.455 1379 104 19 925 2291 298768526 298769847 0.000000e+00 1524
14 TraesCS5B01G534400 chr7A 84.028 144 9 8 608 742 725443092 725442954 5.450000e-25 126
15 TraesCS5B01G534400 chr7D 88.696 115 7 6 628 737 429707788 429707901 9.050000e-28 135
16 TraesCS5B01G534400 chr2B 83.571 140 15 6 606 742 800067295 800067161 1.960000e-24 124
17 TraesCS5B01G534400 chr6D 85.714 119 12 3 629 742 350264525 350264407 2.540000e-23 121
18 TraesCS5B01G534400 chr5A 85.841 113 12 4 633 742 592618789 592618900 3.280000e-22 117
19 TraesCS5B01G534400 chr3D 82.482 137 15 4 595 729 556852770 556852899 1.530000e-20 111
20 TraesCS5B01G534400 chr2D 82.222 135 13 4 606 733 575241249 575241119 7.100000e-19 106


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G534400 chr5B 690702820 690708003 5183 True 9574.00 9574 100.00000 1 5184 1 chr5B.!!$R2 5183
1 TraesCS5B01G534400 chr4A 621659413 621665162 5749 False 1586.00 3190 90.74875 116 5062 4 chr4A.!!$F2 4946
2 TraesCS5B01G534400 chr5D 547272924 547278075 5151 True 1513.75 2761 89.76725 66 4948 4 chr5D.!!$R1 4882
3 TraesCS5B01G534400 chr7A 298768526 298769847 1321 False 1524.00 1524 87.45500 925 2291 1 chr7A.!!$F1 1366

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
579 1330 0.028902 GGTGCCACGTTTTCAGTCAC 59.971 55.000 0.0 0.0 0.00 3.67 F
1357 2190 1.071385 CTGGGGCTATCACTCATCACC 59.929 57.143 0.0 0.0 0.00 4.02 F
1610 2443 0.391263 CTGGTCGCCCCACTACTTTC 60.391 60.000 0.0 0.0 38.72 2.62 F
3289 4177 0.249398 AGGACGGGTATGTGTTCTGC 59.751 55.000 0.0 0.0 0.00 4.26 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1594 2427 1.019805 GCTGAAAGTAGTGGGGCGAC 61.020 60.000 0.0 0.0 35.30 5.19 R
2985 3873 1.271597 CCTTGACTTCTCCCTGGTTGG 60.272 57.143 0.0 0.0 0.00 3.77 R
3575 4485 1.382522 CTGGCACCTGCATAACGAAT 58.617 50.000 0.0 0.0 44.36 3.34 R
4982 6218 0.037232 TTTTAAATTTGGCGGGGCGG 60.037 50.000 0.0 0.0 0.00 6.13 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 9.265901 CTCTCTCTCTATTCTTCTCTTACTGAG 57.734 40.741 0.00 0.00 43.96 3.35
27 28 7.715249 TCTCTCTCTATTCTTCTCTTACTGAGC 59.285 40.741 0.00 0.00 42.38 4.26
28 29 7.573710 TCTCTCTATTCTTCTCTTACTGAGCT 58.426 38.462 0.00 0.00 42.38 4.09
29 30 7.498900 TCTCTCTATTCTTCTCTTACTGAGCTG 59.501 40.741 0.00 0.00 42.38 4.24
30 31 7.342581 TCTCTATTCTTCTCTTACTGAGCTGA 58.657 38.462 0.00 0.00 42.38 4.26
31 32 7.831690 TCTCTATTCTTCTCTTACTGAGCTGAA 59.168 37.037 0.00 0.00 42.38 3.02
32 33 8.354711 TCTATTCTTCTCTTACTGAGCTGAAA 57.645 34.615 0.00 0.00 42.38 2.69
33 34 8.247562 TCTATTCTTCTCTTACTGAGCTGAAAC 58.752 37.037 0.00 0.00 42.38 2.78
34 35 6.412362 TTCTTCTCTTACTGAGCTGAAACT 57.588 37.500 0.00 0.00 42.38 2.66
35 36 7.526142 TTCTTCTCTTACTGAGCTGAAACTA 57.474 36.000 0.00 0.00 42.38 2.24
36 37 7.526142 TCTTCTCTTACTGAGCTGAAACTAA 57.474 36.000 0.00 0.00 42.38 2.24
37 38 7.371936 TCTTCTCTTACTGAGCTGAAACTAAC 58.628 38.462 0.00 0.00 42.38 2.34
38 39 6.650427 TCTCTTACTGAGCTGAAACTAACA 57.350 37.500 0.00 0.00 42.38 2.41
39 40 7.233389 TCTCTTACTGAGCTGAAACTAACAT 57.767 36.000 0.00 0.00 42.38 2.71
40 41 8.349568 TCTCTTACTGAGCTGAAACTAACATA 57.650 34.615 0.00 0.00 42.38 2.29
41 42 8.972127 TCTCTTACTGAGCTGAAACTAACATAT 58.028 33.333 0.00 0.00 42.38 1.78
42 43 9.593134 CTCTTACTGAGCTGAAACTAACATATT 57.407 33.333 0.00 0.00 35.84 1.28
43 44 9.944376 TCTTACTGAGCTGAAACTAACATATTT 57.056 29.630 0.00 0.00 0.00 1.40
47 48 8.299570 ACTGAGCTGAAACTAACATATTTTTGG 58.700 33.333 0.00 0.00 0.00 3.28
48 49 7.090173 TGAGCTGAAACTAACATATTTTTGGC 58.910 34.615 0.00 0.00 0.00 4.52
49 50 7.039784 TGAGCTGAAACTAACATATTTTTGGCT 60.040 33.333 0.00 0.00 0.00 4.75
50 51 7.092716 AGCTGAAACTAACATATTTTTGGCTG 58.907 34.615 0.00 0.00 0.00 4.85
51 52 7.039784 AGCTGAAACTAACATATTTTTGGCTGA 60.040 33.333 0.00 0.00 0.00 4.26
52 53 7.598493 GCTGAAACTAACATATTTTTGGCTGAA 59.402 33.333 0.00 0.00 0.00 3.02
53 54 9.643693 CTGAAACTAACATATTTTTGGCTGAAT 57.356 29.630 0.00 0.00 0.00 2.57
54 55 9.995003 TGAAACTAACATATTTTTGGCTGAATT 57.005 25.926 0.00 0.00 0.00 2.17
90 91 6.017523 CACACTACATCCAACAATGTGTGTAA 60.018 38.462 16.95 0.00 42.80 2.41
194 202 8.747471 TGCATAAAAATCCACTATCATCAAACA 58.253 29.630 0.00 0.00 0.00 2.83
195 203 9.754382 GCATAAAAATCCACTATCATCAAACAT 57.246 29.630 0.00 0.00 0.00 2.71
257 268 2.584236 AGGAGGCATGATTGATTCAGC 58.416 47.619 0.00 0.00 37.89 4.26
339 350 3.929094 TCAATTTGCCTCTCCAAAATGC 58.071 40.909 0.00 0.00 38.12 3.56
348 359 4.340381 GCCTCTCCAAAATGCATAACATCT 59.660 41.667 0.00 0.00 38.34 2.90
349 360 5.735354 GCCTCTCCAAAATGCATAACATCTG 60.735 44.000 0.00 0.00 38.34 2.90
357 368 0.877071 GCATAACATCTGATGCCCCG 59.123 55.000 17.24 5.60 42.18 5.73
381 393 1.206132 CTCCACAACCACATACGCCTA 59.794 52.381 0.00 0.00 0.00 3.93
408 420 4.799678 CTTGTACTCTCTTCTTTCTCGCA 58.200 43.478 0.00 0.00 0.00 5.10
438 450 2.924757 TCTCTCATCCCATGCATGTC 57.075 50.000 24.58 0.00 0.00 3.06
464 1215 6.478344 GCCTTTTTATTGAACACATCACACAA 59.522 34.615 0.00 0.00 37.92 3.33
466 1217 7.706179 CCTTTTTATTGAACACATCACACAACT 59.294 33.333 0.00 0.00 37.92 3.16
490 1241 6.720309 TGTTGAATTATGATCAGGGAGACAA 58.280 36.000 0.09 1.17 0.00 3.18
500 1251 4.705110 TCAGGGAGACAAAGAACAATCA 57.295 40.909 0.00 0.00 0.00 2.57
531 1282 8.748412 TGGATAACCAGGAATGACTTTATTTTG 58.252 33.333 0.00 0.00 41.77 2.44
536 1287 6.782494 ACCAGGAATGACTTTATTTTGAAGGT 59.218 34.615 0.00 0.00 0.00 3.50
561 1312 6.204688 TGACTAAACTCTTTGCACTTGTATGG 59.795 38.462 0.00 0.00 0.00 2.74
579 1330 0.028902 GGTGCCACGTTTTCAGTCAC 59.971 55.000 0.00 0.00 0.00 3.67
580 1331 0.028902 GTGCCACGTTTTCAGTCACC 59.971 55.000 0.00 0.00 0.00 4.02
586 1337 3.366476 CCACGTTTTCAGTCACCAAAACA 60.366 43.478 11.48 0.00 40.90 2.83
588 1339 3.175929 CGTTTTCAGTCACCAAAACACC 58.824 45.455 11.48 0.00 40.90 4.16
616 1367 4.112634 TCAAAATAAGAAGGGTGTGGCT 57.887 40.909 0.00 0.00 0.00 4.75
617 1368 5.249780 TCAAAATAAGAAGGGTGTGGCTA 57.750 39.130 0.00 0.00 0.00 3.93
621 1372 7.719633 TCAAAATAAGAAGGGTGTGGCTATATC 59.280 37.037 0.00 0.00 0.00 1.63
622 1373 7.394144 AAATAAGAAGGGTGTGGCTATATCT 57.606 36.000 0.00 0.00 0.00 1.98
623 1374 4.965200 AAGAAGGGTGTGGCTATATCTC 57.035 45.455 0.00 0.00 0.00 2.75
624 1375 3.928754 AGAAGGGTGTGGCTATATCTCA 58.071 45.455 0.00 0.00 0.00 3.27
625 1376 3.900601 AGAAGGGTGTGGCTATATCTCAG 59.099 47.826 0.00 0.00 0.00 3.35
626 1377 3.336509 AGGGTGTGGCTATATCTCAGT 57.663 47.619 0.00 0.00 0.00 3.41
627 1378 3.658725 AGGGTGTGGCTATATCTCAGTT 58.341 45.455 0.00 0.00 0.00 3.16
732 1542 7.881643 AAGATCTCACGAATATAGCATCAAC 57.118 36.000 0.00 0.00 0.00 3.18
804 1615 1.376812 GGGAAGGATTTGGACGCGT 60.377 57.895 13.85 13.85 0.00 6.01
857 1668 1.153289 CTCGCTCCCACCCAATCAG 60.153 63.158 0.00 0.00 0.00 2.90
1011 1828 1.713830 GTACGAAATGCTGTCCGCC 59.286 57.895 0.00 0.00 38.05 6.13
1118 1941 4.527583 CAGCTGCCTCCGCCTCTC 62.528 72.222 0.00 0.00 0.00 3.20
1357 2190 1.071385 CTGGGGCTATCACTCATCACC 59.929 57.143 0.00 0.00 0.00 4.02
1380 2213 3.369175 TGAGACTATGAGACTGCCATGT 58.631 45.455 0.00 0.00 0.00 3.21
1384 2217 2.026915 ACTATGAGACTGCCATGTTGCA 60.027 45.455 0.00 0.00 39.37 4.08
1396 2229 1.855213 ATGTTGCATGCAGTTCGCGT 61.855 50.000 21.50 8.55 46.97 6.01
1610 2443 0.391263 CTGGTCGCCCCACTACTTTC 60.391 60.000 0.00 0.00 38.72 2.62
1623 2456 1.741706 CTACTTTCAGCCGACCGTAGA 59.258 52.381 0.00 0.00 30.83 2.59
1666 2499 1.503542 CGGATTGCAGCTGGTGAAC 59.496 57.895 17.12 0.00 0.00 3.18
1667 2500 0.957395 CGGATTGCAGCTGGTGAACT 60.957 55.000 17.12 0.00 0.00 3.01
1669 2502 2.436417 GGATTGCAGCTGGTGAACTTA 58.564 47.619 17.12 0.00 0.00 2.24
1671 2504 3.445096 GGATTGCAGCTGGTGAACTTAAT 59.555 43.478 17.12 2.78 0.00 1.40
1674 2507 6.350110 GGATTGCAGCTGGTGAACTTAATTTA 60.350 38.462 17.12 0.00 0.00 1.40
1707 2540 1.891150 CTGTTTTGGCTTGCAGATCCT 59.109 47.619 0.00 0.00 0.00 3.24
1710 2543 3.507233 TGTTTTGGCTTGCAGATCCTAAG 59.493 43.478 0.00 0.00 0.00 2.18
1716 2549 1.487976 CTTGCAGATCCTAAGAGGCCA 59.512 52.381 5.01 0.00 34.61 5.36
1835 2672 2.665165 TCCGGCATGCTAAAATCCATT 58.335 42.857 18.92 0.00 0.00 3.16
1866 2703 3.868757 TTGTAGCTAGTAGCCACTGTG 57.131 47.619 19.40 0.00 43.77 3.66
1886 2723 8.999431 CACTGTGTTTACTAATTAAGTGGATGT 58.001 33.333 0.00 0.00 39.39 3.06
2138 3022 1.958288 ACCTGGTTCTGATAGTGGCT 58.042 50.000 0.00 0.00 0.00 4.75
2189 3073 8.414003 TCACATGATCAGACACCTATTTAGTAC 58.586 37.037 0.00 0.00 0.00 2.73
2217 3101 2.564947 TGACAGTTTTGGTTGTGCCTTT 59.435 40.909 0.00 0.00 38.35 3.11
2234 3119 9.724839 TTGTGCCTTTAAATATTATTACTTCGC 57.275 29.630 0.00 0.00 0.00 4.70
2315 3200 2.159517 GGTAGTTGAAGCAAATGAGGCG 60.160 50.000 0.00 0.00 36.08 5.52
2414 3299 4.852134 TGATGGAATTGTTGGTTCTGTG 57.148 40.909 0.00 0.00 0.00 3.66
2682 3567 7.285172 TGCGTAAGTATCCTAGTGGTGTATTTA 59.715 37.037 0.00 0.00 41.68 1.40
2732 3618 4.455877 AGTGCAATCTAGTTAGTTTGTGGC 59.544 41.667 10.18 0.00 36.11 5.01
2820 3706 7.392393 CACATCAGGAATATGATCTTAATGCCA 59.608 37.037 0.00 0.00 37.84 4.92
2913 3801 5.452078 TTTTGTTGCTTACAAGGGAGATG 57.548 39.130 5.38 0.00 46.81 2.90
2985 3873 4.130118 CTGACATACTTGCATTCCCTACC 58.870 47.826 0.00 0.00 0.00 3.18
2989 3877 2.215942 ACTTGCATTCCCTACCCAAC 57.784 50.000 0.00 0.00 0.00 3.77
3077 3965 8.217111 ACATTGGACAAAATTATTCCTTTGGTT 58.783 29.630 0.00 0.00 36.94 3.67
3116 4004 3.864003 GCGTCTCAGGATGTTTTACTACC 59.136 47.826 0.00 0.00 37.40 3.18
3117 4005 4.381718 GCGTCTCAGGATGTTTTACTACCT 60.382 45.833 0.00 0.00 37.40 3.08
3157 4045 2.353803 GGAGTGGACTCGTGCAGTTAAT 60.354 50.000 0.43 0.00 43.76 1.40
3202 4090 2.620585 TCTATCACCTGATGCTGAGACG 59.379 50.000 0.00 0.00 36.05 4.18
3223 4111 3.007290 CGGCATCATCTCCTCCAGAAATA 59.993 47.826 0.00 0.00 33.62 1.40
3244 4132 6.882768 ATAGAACTTCTTCCAGGACTTGAT 57.117 37.500 0.00 0.00 0.00 2.57
3289 4177 0.249398 AGGACGGGTATGTGTTCTGC 59.751 55.000 0.00 0.00 0.00 4.26
3342 4230 3.244422 TGGTGTACCACTTTAAGAGCAGG 60.244 47.826 0.00 0.00 42.01 4.85
3356 4266 1.348036 GAGCAGGGTCCATGGTATACC 59.652 57.143 15.50 15.50 0.00 2.73
3367 4277 7.400915 GGGTCCATGGTATACCTGTATGTATAA 59.599 40.741 22.41 0.00 35.91 0.98
3519 4429 4.498323 CGTATCGTCCTAAAGCACACTAAC 59.502 45.833 0.00 0.00 0.00 2.34
3524 4434 5.865552 TCGTCCTAAAGCACACTAACATTAC 59.134 40.000 0.00 0.00 0.00 1.89
3536 4446 7.274904 GCACACTAACATTACTACTCATCGAAA 59.725 37.037 0.00 0.00 0.00 3.46
3537 4447 8.584600 CACACTAACATTACTACTCATCGAAAC 58.415 37.037 0.00 0.00 0.00 2.78
3544 4454 2.271800 CTACTCATCGAAACTGCCACC 58.728 52.381 0.00 0.00 0.00 4.61
3548 4458 1.278985 TCATCGAAACTGCCACCTGAT 59.721 47.619 0.00 0.00 0.00 2.90
3549 4459 2.499693 TCATCGAAACTGCCACCTGATA 59.500 45.455 0.00 0.00 0.00 2.15
3575 4485 3.449918 TGGTGATGTATTGGGTCTCTCA 58.550 45.455 0.00 0.00 0.00 3.27
3651 4561 1.882623 GGAGACAGGTTGGCTTTCTTG 59.117 52.381 0.00 0.00 34.53 3.02
3659 4574 5.539955 ACAGGTTGGCTTTCTTGTTTGATAT 59.460 36.000 0.00 0.00 0.00 1.63
3741 4657 1.279846 GTGGATAGGTTTTCGGTCCCA 59.720 52.381 0.00 0.00 0.00 4.37
3758 4674 3.004734 GTCCCAGGTCAACAGAACAAATG 59.995 47.826 0.00 0.00 0.00 2.32
3773 4689 6.017605 CAGAACAAATGCTACATCCCATAGAC 60.018 42.308 0.00 0.00 0.00 2.59
3825 4741 8.072567 GCCATTGATCACAACTTATCTATTGAC 58.927 37.037 0.00 0.00 38.90 3.18
3838 4754 1.863454 CTATTGACATGTCCTGCGAGC 59.137 52.381 22.85 0.00 0.00 5.03
3899 4821 3.485877 GGCTCTTTTTATGCAGCTGTACG 60.486 47.826 16.64 0.00 32.14 3.67
3985 4909 6.349777 GCTGCATAACCAACCTGTTTATACAA 60.350 38.462 0.00 0.00 32.92 2.41
4005 5028 8.837788 ATACAATGTCCATATATCACACACAG 57.162 34.615 0.00 0.00 0.00 3.66
4008 5031 3.454082 TGTCCATATATCACACACAGGCA 59.546 43.478 0.00 0.00 0.00 4.75
4014 5037 7.391275 TCCATATATCACACACAGGCATTTATG 59.609 37.037 0.00 0.00 0.00 1.90
4043 5066 2.221981 CACCTTGTCTTCTCGCTTTCAC 59.778 50.000 0.00 0.00 0.00 3.18
4057 5080 2.030805 GCTTTCACAACTGTAGGCCAAG 60.031 50.000 5.01 1.33 0.00 3.61
4059 5082 2.543777 TCACAACTGTAGGCCAAGTC 57.456 50.000 5.01 0.00 0.00 3.01
4072 5095 5.643421 AGGCCAAGTCTTCATAGATGATT 57.357 39.130 5.01 0.00 36.56 2.57
4191 5214 4.785453 CGTTCCCTGAGCCTGCCC 62.785 72.222 0.00 0.00 0.00 5.36
4242 5274 5.243283 CCCTAACTAAGCGACCACACTATAT 59.757 44.000 0.00 0.00 0.00 0.86
4247 5279 7.991084 ACTAAGCGACCACACTATATATACA 57.009 36.000 0.00 0.00 0.00 2.29
4248 5280 8.577048 ACTAAGCGACCACACTATATATACAT 57.423 34.615 0.00 0.00 0.00 2.29
4249 5281 9.676861 ACTAAGCGACCACACTATATATACATA 57.323 33.333 0.00 0.00 0.00 2.29
4250 5282 9.932699 CTAAGCGACCACACTATATATACATAC 57.067 37.037 0.00 0.00 0.00 2.39
4268 5300 1.797025 ACTGAAGCCTAAACGACAGC 58.203 50.000 0.00 0.00 0.00 4.40
4271 5303 2.143122 TGAAGCCTAAACGACAGCTTG 58.857 47.619 0.09 0.00 45.20 4.01
4310 5343 2.305927 TGAAACTCCATTCCTCCCAGTC 59.694 50.000 0.00 0.00 0.00 3.51
4329 5362 2.828933 GGAGACCGAGAGTTGTTGC 58.171 57.895 0.00 0.00 0.00 4.17
4362 5395 2.093447 GCACTGCAATGAGTAGGTAGGT 60.093 50.000 0.00 0.00 33.78 3.08
4378 5411 4.120331 GTGCGGCAATCACCTGGC 62.120 66.667 3.23 0.00 38.47 4.85
4379 5412 4.349503 TGCGGCAATCACCTGGCT 62.350 61.111 0.00 0.00 39.65 4.75
4380 5413 3.818787 GCGGCAATCACCTGGCTG 61.819 66.667 0.00 0.00 39.65 4.85
4381 5414 2.046023 CGGCAATCACCTGGCTGA 60.046 61.111 0.00 0.00 39.65 4.26
4382 5415 1.675310 CGGCAATCACCTGGCTGAA 60.675 57.895 0.00 0.00 39.65 3.02
4402 5435 1.843851 ACTGAACCAACTGAACCCTCA 59.156 47.619 0.00 0.00 0.00 3.86
4403 5436 2.443255 ACTGAACCAACTGAACCCTCAT 59.557 45.455 0.00 0.00 0.00 2.90
4424 5457 6.037786 CATGGAGTTCCCGTGTATATGTAT 57.962 41.667 0.00 0.00 45.05 2.29
4427 5460 7.165460 TGGAGTTCCCGTGTATATGTATATG 57.835 40.000 0.00 0.00 37.93 1.78
4428 5461 6.040878 GGAGTTCCCGTGTATATGTATATGC 58.959 44.000 0.00 0.00 0.00 3.14
4429 5462 6.350696 GGAGTTCCCGTGTATATGTATATGCA 60.351 42.308 0.00 0.00 33.83 3.96
4430 5463 6.999950 AGTTCCCGTGTATATGTATATGCAA 58.000 36.000 0.00 0.00 37.17 4.08
4431 5464 7.446769 AGTTCCCGTGTATATGTATATGCAAA 58.553 34.615 0.00 0.00 37.17 3.68
4432 5465 8.100791 AGTTCCCGTGTATATGTATATGCAAAT 58.899 33.333 0.00 0.00 37.17 2.32
4458 5491 8.537729 AAATATAAATGCGTACGTTTGCTAAC 57.462 30.769 17.90 0.51 35.75 2.34
4498 5539 2.798283 TGTCGTGGTTTCGATGAAGTTC 59.202 45.455 0.00 0.00 41.78 3.01
4499 5540 2.055838 TCGTGGTTTCGATGAAGTTCG 58.944 47.619 0.00 0.00 40.46 3.95
4500 5541 1.790623 CGTGGTTTCGATGAAGTTCGT 59.209 47.619 0.00 0.00 40.03 3.85
4501 5542 2.981805 CGTGGTTTCGATGAAGTTCGTA 59.018 45.455 0.00 0.00 40.03 3.43
4502 5543 3.059044 CGTGGTTTCGATGAAGTTCGTAG 59.941 47.826 0.00 0.00 40.03 3.51
4504 5545 3.256383 TGGTTTCGATGAAGTTCGTAGGA 59.744 43.478 0.00 0.00 40.03 2.94
4505 5546 3.611549 GGTTTCGATGAAGTTCGTAGGAC 59.388 47.826 0.00 1.68 40.03 3.85
4520 5567 2.510238 GACTAGCAGCGGTGGCAG 60.510 66.667 17.54 10.64 43.41 4.85
4538 5585 2.351157 GCAGATGGCTCACTTTGTGTTC 60.351 50.000 0.00 0.00 40.25 3.18
4539 5586 2.227388 CAGATGGCTCACTTTGTGTTCC 59.773 50.000 0.00 1.87 34.79 3.62
4556 5603 5.169295 GTGTTCCTCGAAATAGCAACTAGT 58.831 41.667 0.00 0.00 0.00 2.57
4575 5622 4.676586 GCGTTTGGTTGGTCGCCG 62.677 66.667 0.00 0.00 42.33 6.46
4576 5623 4.020378 CGTTTGGTTGGTCGCCGG 62.020 66.667 0.00 0.00 0.00 6.13
4577 5624 2.903350 GTTTGGTTGGTCGCCGGT 60.903 61.111 1.90 0.00 0.00 5.28
4578 5625 2.592287 TTTGGTTGGTCGCCGGTC 60.592 61.111 1.90 0.00 0.00 4.79
4579 5626 4.973055 TTGGTTGGTCGCCGGTCG 62.973 66.667 1.90 7.73 40.15 4.79
4615 5662 4.402474 TGACCTGAATCTCGATAAGCAAGA 59.598 41.667 0.00 0.00 0.00 3.02
4616 5663 4.942852 ACCTGAATCTCGATAAGCAAGAG 58.057 43.478 0.00 0.00 0.00 2.85
4617 5664 3.740321 CCTGAATCTCGATAAGCAAGAGC 59.260 47.826 0.00 0.00 42.56 4.09
4618 5665 4.366586 CTGAATCTCGATAAGCAAGAGCA 58.633 43.478 0.00 0.00 45.49 4.26
4619 5666 4.953667 TGAATCTCGATAAGCAAGAGCAT 58.046 39.130 0.00 0.00 45.49 3.79
4627 5674 2.181021 GCAAGAGCATGCAGTGGC 59.819 61.111 21.98 11.78 45.70 5.01
4653 5703 2.697751 TCAAACAGTCAAATTGGGTGGG 59.302 45.455 0.00 0.00 0.00 4.61
4663 5713 4.044065 TCAAATTGGGTGGGAAGTACATCT 59.956 41.667 0.00 0.00 0.00 2.90
4703 5754 6.258230 TGCATTTTGGACAAAGATAGTCTG 57.742 37.500 0.00 0.00 36.29 3.51
4778 5829 7.148722 GCGAGATGCTAATTAGTTTATGGAGTC 60.149 40.741 13.91 0.00 41.73 3.36
4782 5833 6.591935 TGCTAATTAGTTTATGGAGTCTGGG 58.408 40.000 13.91 0.00 0.00 4.45
4786 5837 6.749036 ATTAGTTTATGGAGTCTGGGGTAG 57.251 41.667 0.00 0.00 0.00 3.18
4836 6068 4.451435 GGTAGGCTAGTGAAAAAGTGACAC 59.549 45.833 0.00 0.00 35.15 3.67
4981 6217 4.157120 CCACCATCCCGTCCCGTC 62.157 72.222 0.00 0.00 0.00 4.79
4982 6218 4.157120 CACCATCCCGTCCCGTCC 62.157 72.222 0.00 0.00 0.00 4.79
5015 6251 4.776795 ATTTAAAAGGGCAACACTACGG 57.223 40.909 0.00 0.00 39.74 4.02
5055 6291 4.439289 GCCTTGTGAGCTATTGGATTCAAC 60.439 45.833 0.00 0.00 35.48 3.18
5056 6292 4.201851 CCTTGTGAGCTATTGGATTCAACG 60.202 45.833 0.00 0.00 35.48 4.10
5062 6298 6.480320 GTGAGCTATTGGATTCAACGTAAGAT 59.520 38.462 0.00 0.00 43.62 2.40
5063 6299 6.479990 TGAGCTATTGGATTCAACGTAAGATG 59.520 38.462 0.00 0.00 42.13 2.90
5064 6300 5.760253 AGCTATTGGATTCAACGTAAGATGG 59.240 40.000 0.00 0.00 40.97 3.51
5065 6301 4.900635 ATTGGATTCAACGTAAGATGGC 57.099 40.909 0.00 0.00 40.97 4.40
5066 6302 2.639065 TGGATTCAACGTAAGATGGCC 58.361 47.619 0.00 0.00 40.97 5.36
5067 6303 1.597663 GGATTCAACGTAAGATGGCCG 59.402 52.381 0.00 0.00 40.97 6.13
5068 6304 2.277084 GATTCAACGTAAGATGGCCGT 58.723 47.619 0.00 0.00 40.97 5.68
5069 6305 2.172851 TTCAACGTAAGATGGCCGTT 57.827 45.000 0.00 0.00 44.81 4.44
5070 6306 3.316071 TTCAACGTAAGATGGCCGTTA 57.684 42.857 0.00 0.00 42.34 3.18
5071 6307 2.883574 TCAACGTAAGATGGCCGTTAG 58.116 47.619 0.00 0.00 42.34 2.34
5072 6308 1.931172 CAACGTAAGATGGCCGTTAGG 59.069 52.381 0.00 4.76 42.34 2.69
5073 6309 1.188863 ACGTAAGATGGCCGTTAGGT 58.811 50.000 0.00 5.42 39.84 3.08
5074 6310 1.551883 ACGTAAGATGGCCGTTAGGTT 59.448 47.619 0.00 0.00 39.84 3.50
5075 6311 2.199236 CGTAAGATGGCCGTTAGGTTC 58.801 52.381 0.00 0.00 39.11 3.62
5076 6312 2.417651 CGTAAGATGGCCGTTAGGTTCA 60.418 50.000 0.00 0.00 39.11 3.18
5077 6313 2.871096 AAGATGGCCGTTAGGTTCAA 57.129 45.000 0.00 0.00 40.50 2.69
5078 6314 2.109425 AGATGGCCGTTAGGTTCAAC 57.891 50.000 0.00 0.00 40.50 3.18
5079 6315 1.628846 AGATGGCCGTTAGGTTCAACT 59.371 47.619 0.00 0.00 40.50 3.16
5080 6316 1.737793 GATGGCCGTTAGGTTCAACTG 59.262 52.381 0.00 0.00 40.50 3.16
5081 6317 0.470766 TGGCCGTTAGGTTCAACTGT 59.529 50.000 0.00 0.00 40.50 3.55
5082 6318 0.872388 GGCCGTTAGGTTCAACTGTG 59.128 55.000 0.00 0.00 40.50 3.66
5083 6319 1.541670 GGCCGTTAGGTTCAACTGTGA 60.542 52.381 0.00 0.00 40.50 3.58
5084 6320 1.798813 GCCGTTAGGTTCAACTGTGAG 59.201 52.381 0.00 0.00 40.50 3.51
5085 6321 1.798813 CCGTTAGGTTCAACTGTGAGC 59.201 52.381 0.00 0.00 34.49 4.26
5086 6322 2.548067 CCGTTAGGTTCAACTGTGAGCT 60.548 50.000 0.00 0.00 35.45 4.09
5087 6323 3.131396 CGTTAGGTTCAACTGTGAGCTT 58.869 45.455 0.00 0.00 35.45 3.74
5088 6324 3.560068 CGTTAGGTTCAACTGTGAGCTTT 59.440 43.478 0.00 0.00 35.45 3.51
5089 6325 4.552767 CGTTAGGTTCAACTGTGAGCTTTG 60.553 45.833 0.00 0.00 35.45 2.77
5090 6326 1.678101 AGGTTCAACTGTGAGCTTTGC 59.322 47.619 0.00 0.00 35.45 3.68
5091 6327 1.405105 GGTTCAACTGTGAGCTTTGCA 59.595 47.619 0.00 0.00 35.45 4.08
5092 6328 2.159254 GGTTCAACTGTGAGCTTTGCAA 60.159 45.455 0.00 0.00 35.45 4.08
5093 6329 2.849880 TCAACTGTGAGCTTTGCAAC 57.150 45.000 0.00 0.00 0.00 4.17
5094 6330 2.090760 TCAACTGTGAGCTTTGCAACA 58.909 42.857 0.00 0.00 0.00 3.33
5095 6331 2.491298 TCAACTGTGAGCTTTGCAACAA 59.509 40.909 0.00 0.00 29.66 2.83
5096 6332 3.130869 TCAACTGTGAGCTTTGCAACAAT 59.869 39.130 0.00 0.00 29.66 2.71
5097 6333 3.088194 ACTGTGAGCTTTGCAACAATG 57.912 42.857 0.00 0.00 29.66 2.82
5098 6334 2.689471 ACTGTGAGCTTTGCAACAATGA 59.311 40.909 0.00 0.00 29.66 2.57
5099 6335 3.319972 ACTGTGAGCTTTGCAACAATGAT 59.680 39.130 0.00 0.00 29.66 2.45
5100 6336 3.644823 TGTGAGCTTTGCAACAATGATG 58.355 40.909 0.00 0.00 0.00 3.07
5101 6337 3.318557 TGTGAGCTTTGCAACAATGATGA 59.681 39.130 0.00 0.00 0.00 2.92
5102 6338 4.021807 TGTGAGCTTTGCAACAATGATGAT 60.022 37.500 0.00 0.00 0.00 2.45
5103 6339 4.326278 GTGAGCTTTGCAACAATGATGATG 59.674 41.667 0.00 0.00 32.84 3.07
5104 6340 4.021807 TGAGCTTTGCAACAATGATGATGT 60.022 37.500 0.00 0.00 32.33 3.06
5105 6341 4.890088 AGCTTTGCAACAATGATGATGTT 58.110 34.783 0.00 0.00 41.50 2.71
5106 6342 5.302360 AGCTTTGCAACAATGATGATGTTT 58.698 33.333 0.00 0.00 38.90 2.83
5107 6343 5.407387 AGCTTTGCAACAATGATGATGTTTC 59.593 36.000 0.00 0.00 38.90 2.78
5108 6344 5.666913 GCTTTGCAACAATGATGATGTTTCG 60.667 40.000 0.00 0.00 38.90 3.46
5109 6345 4.502171 TGCAACAATGATGATGTTTCGT 57.498 36.364 0.00 0.00 38.90 3.85
5110 6346 4.869215 TGCAACAATGATGATGTTTCGTT 58.131 34.783 0.00 0.00 38.90 3.85
5111 6347 4.916831 TGCAACAATGATGATGTTTCGTTC 59.083 37.500 0.00 0.00 38.90 3.95
5112 6348 4.029418 GCAACAATGATGATGTTTCGTTCG 59.971 41.667 0.00 0.00 38.90 3.95
5113 6349 4.340894 ACAATGATGATGTTTCGTTCGG 57.659 40.909 0.00 0.00 0.00 4.30
5114 6350 4.000325 ACAATGATGATGTTTCGTTCGGA 59.000 39.130 0.00 0.00 0.00 4.55
5115 6351 4.635765 ACAATGATGATGTTTCGTTCGGAT 59.364 37.500 0.00 0.00 0.00 4.18
5116 6352 4.801147 ATGATGATGTTTCGTTCGGATG 57.199 40.909 0.00 0.00 0.00 3.51
5117 6353 3.595173 TGATGATGTTTCGTTCGGATGT 58.405 40.909 0.00 0.00 0.00 3.06
5118 6354 4.000325 TGATGATGTTTCGTTCGGATGTT 59.000 39.130 0.00 0.00 0.00 2.71
5119 6355 4.454161 TGATGATGTTTCGTTCGGATGTTT 59.546 37.500 0.00 0.00 0.00 2.83
5120 6356 4.140518 TGATGTTTCGTTCGGATGTTTG 57.859 40.909 0.00 0.00 0.00 2.93
5121 6357 2.392933 TGTTTCGTTCGGATGTTTGC 57.607 45.000 0.00 0.00 0.00 3.68
5122 6358 1.671328 TGTTTCGTTCGGATGTTTGCA 59.329 42.857 0.00 0.00 0.00 4.08
5123 6359 2.097629 TGTTTCGTTCGGATGTTTGCAA 59.902 40.909 0.00 0.00 0.00 4.08
5124 6360 2.392933 TTCGTTCGGATGTTTGCAAC 57.607 45.000 0.00 0.00 0.00 4.17
5125 6361 1.300481 TCGTTCGGATGTTTGCAACA 58.700 45.000 0.00 0.88 46.94 3.33
5126 6362 1.262950 TCGTTCGGATGTTTGCAACAG 59.737 47.619 0.00 0.00 45.95 3.16
5127 6363 1.262950 CGTTCGGATGTTTGCAACAGA 59.737 47.619 0.00 0.00 45.95 3.41
5128 6364 2.662791 CGTTCGGATGTTTGCAACAGAG 60.663 50.000 0.00 0.00 45.95 3.35
5129 6365 2.254546 TCGGATGTTTGCAACAGAGT 57.745 45.000 0.00 0.00 45.95 3.24
5130 6366 2.571212 TCGGATGTTTGCAACAGAGTT 58.429 42.857 0.00 0.00 45.95 3.01
5131 6367 2.290367 TCGGATGTTTGCAACAGAGTTG 59.710 45.455 0.00 5.56 45.95 3.16
5132 6368 2.290367 CGGATGTTTGCAACAGAGTTGA 59.710 45.455 13.58 0.00 45.95 3.18
5133 6369 3.058016 CGGATGTTTGCAACAGAGTTGAT 60.058 43.478 13.58 0.00 45.95 2.57
5134 6370 4.232221 GGATGTTTGCAACAGAGTTGATG 58.768 43.478 13.58 0.00 45.95 3.07
5135 6371 4.261741 GGATGTTTGCAACAGAGTTGATGT 60.262 41.667 13.58 0.00 45.95 3.06
5136 6372 4.717233 TGTTTGCAACAGAGTTGATGTT 57.283 36.364 13.58 0.00 41.47 2.71
5143 6379 4.558538 AACAGAGTTGATGTTGCAGAAC 57.441 40.909 0.00 0.00 39.36 3.01
5144 6380 3.813443 ACAGAGTTGATGTTGCAGAACT 58.187 40.909 0.00 0.00 32.79 3.01
5145 6381 3.812053 ACAGAGTTGATGTTGCAGAACTC 59.188 43.478 12.86 12.86 43.06 3.01
5146 6382 3.811497 CAGAGTTGATGTTGCAGAACTCA 59.189 43.478 18.65 6.76 44.48 3.41
5147 6383 4.454847 CAGAGTTGATGTTGCAGAACTCAT 59.545 41.667 18.65 8.07 44.48 2.90
5148 6384 4.454847 AGAGTTGATGTTGCAGAACTCATG 59.545 41.667 18.65 0.00 44.48 3.07
5149 6385 3.057736 AGTTGATGTTGCAGAACTCATGC 60.058 43.478 0.00 0.00 44.11 4.06
5150 6386 1.465777 TGATGTTGCAGAACTCATGCG 59.534 47.619 0.00 0.00 46.87 4.73
5151 6387 1.733912 GATGTTGCAGAACTCATGCGA 59.266 47.619 0.00 0.00 46.87 5.10
5152 6388 1.812235 TGTTGCAGAACTCATGCGAT 58.188 45.000 0.00 0.00 46.87 4.58
5153 6389 1.465777 TGTTGCAGAACTCATGCGATG 59.534 47.619 0.00 0.00 46.87 3.84
5154 6390 1.733912 GTTGCAGAACTCATGCGATGA 59.266 47.619 0.00 0.00 46.87 2.92
5155 6391 2.097680 TGCAGAACTCATGCGATGAA 57.902 45.000 0.00 0.00 46.87 2.57
5156 6392 2.004733 TGCAGAACTCATGCGATGAAG 58.995 47.619 0.00 0.00 46.87 3.02
5157 6393 1.329906 GCAGAACTCATGCGATGAAGG 59.670 52.381 0.00 0.00 39.11 3.46
5158 6394 2.625737 CAGAACTCATGCGATGAAGGT 58.374 47.619 0.00 0.00 39.11 3.50
5159 6395 3.785486 CAGAACTCATGCGATGAAGGTA 58.215 45.455 0.00 0.00 39.11 3.08
5160 6396 4.375272 CAGAACTCATGCGATGAAGGTAT 58.625 43.478 0.00 0.00 39.11 2.73
5161 6397 4.813161 CAGAACTCATGCGATGAAGGTATT 59.187 41.667 0.00 0.00 39.11 1.89
5162 6398 4.813161 AGAACTCATGCGATGAAGGTATTG 59.187 41.667 0.00 0.00 39.11 1.90
5163 6399 2.874701 ACTCATGCGATGAAGGTATTGC 59.125 45.455 0.00 0.00 39.11 3.56
5164 6400 3.136763 CTCATGCGATGAAGGTATTGCT 58.863 45.455 0.00 0.00 39.11 3.91
5165 6401 2.874086 TCATGCGATGAAGGTATTGCTG 59.126 45.455 0.00 0.00 38.13 4.41
5166 6402 1.016627 TGCGATGAAGGTATTGCTGC 58.983 50.000 0.00 0.00 38.13 5.25
5167 6403 1.016627 GCGATGAAGGTATTGCTGCA 58.983 50.000 0.00 0.00 35.11 4.41
5168 6404 1.401552 GCGATGAAGGTATTGCTGCAA 59.598 47.619 18.43 18.43 35.11 4.08
5169 6405 2.159393 GCGATGAAGGTATTGCTGCAAA 60.159 45.455 20.06 6.18 35.11 3.68
5170 6406 3.429085 CGATGAAGGTATTGCTGCAAAC 58.571 45.455 20.06 16.88 0.00 2.93
5171 6407 3.127548 CGATGAAGGTATTGCTGCAAACT 59.872 43.478 20.06 14.45 0.00 2.66
5172 6408 4.379813 CGATGAAGGTATTGCTGCAAACTT 60.380 41.667 20.06 21.20 0.00 2.66
5173 6409 4.935352 TGAAGGTATTGCTGCAAACTTT 57.065 36.364 20.06 18.58 0.00 2.66
5174 6410 5.275067 TGAAGGTATTGCTGCAAACTTTT 57.725 34.783 20.06 11.53 0.00 2.27
5175 6411 6.398234 TGAAGGTATTGCTGCAAACTTTTA 57.602 33.333 20.06 13.82 0.00 1.52
5176 6412 6.991938 TGAAGGTATTGCTGCAAACTTTTAT 58.008 32.000 20.06 3.32 0.00 1.40
5177 6413 7.441017 TGAAGGTATTGCTGCAAACTTTTATT 58.559 30.769 20.06 7.99 0.00 1.40
5178 6414 7.930865 TGAAGGTATTGCTGCAAACTTTTATTT 59.069 29.630 20.06 1.78 0.00 1.40
5179 6415 8.675705 AAGGTATTGCTGCAAACTTTTATTTT 57.324 26.923 20.06 1.01 0.00 1.82
5180 6416 8.675705 AGGTATTGCTGCAAACTTTTATTTTT 57.324 26.923 20.06 0.47 0.00 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 9.944376 AAATATGTTAGTTTCAGCTCAGTAAGA 57.056 29.630 0.00 0.00 0.00 2.10
21 22 8.299570 CCAAAAATATGTTAGTTTCAGCTCAGT 58.700 33.333 0.00 0.00 0.00 3.41
22 23 7.274250 GCCAAAAATATGTTAGTTTCAGCTCAG 59.726 37.037 0.00 0.00 0.00 3.35
23 24 7.039784 AGCCAAAAATATGTTAGTTTCAGCTCA 60.040 33.333 0.00 0.00 32.32 4.26
24 25 7.274250 CAGCCAAAAATATGTTAGTTTCAGCTC 59.726 37.037 0.00 0.00 34.19 4.09
25 26 7.039784 TCAGCCAAAAATATGTTAGTTTCAGCT 60.040 33.333 0.00 0.00 35.68 4.24
26 27 7.090173 TCAGCCAAAAATATGTTAGTTTCAGC 58.910 34.615 0.00 0.00 0.00 4.26
27 28 9.643693 ATTCAGCCAAAAATATGTTAGTTTCAG 57.356 29.630 0.00 0.00 0.00 3.02
28 29 9.995003 AATTCAGCCAAAAATATGTTAGTTTCA 57.005 25.926 0.00 0.00 0.00 2.69
40 41 9.118300 TGAACATACAAAAATTCAGCCAAAAAT 57.882 25.926 0.00 0.00 0.00 1.82
41 42 8.394121 GTGAACATACAAAAATTCAGCCAAAAA 58.606 29.630 0.00 0.00 31.94 1.94
42 43 7.550551 TGTGAACATACAAAAATTCAGCCAAAA 59.449 29.630 0.00 0.00 31.94 2.44
43 44 7.010923 GTGTGAACATACAAAAATTCAGCCAAA 59.989 33.333 0.00 0.00 31.94 3.28
44 45 6.478344 GTGTGAACATACAAAAATTCAGCCAA 59.522 34.615 0.00 0.00 31.94 4.52
45 46 5.982516 GTGTGAACATACAAAAATTCAGCCA 59.017 36.000 0.00 0.00 31.94 4.75
46 47 6.215845 AGTGTGAACATACAAAAATTCAGCC 58.784 36.000 4.71 0.00 31.94 4.85
47 48 7.860373 TGTAGTGTGAACATACAAAAATTCAGC 59.140 33.333 4.71 0.00 31.94 4.26
48 49 9.897744 ATGTAGTGTGAACATACAAAAATTCAG 57.102 29.630 4.71 0.00 35.82 3.02
49 50 9.891828 GATGTAGTGTGAACATACAAAAATTCA 57.108 29.630 4.71 0.00 37.69 2.57
50 51 9.341899 GGATGTAGTGTGAACATACAAAAATTC 57.658 33.333 4.71 0.00 37.98 2.17
51 52 8.855110 TGGATGTAGTGTGAACATACAAAAATT 58.145 29.630 0.00 0.00 43.57 1.82
52 53 8.402798 TGGATGTAGTGTGAACATACAAAAAT 57.597 30.769 0.00 0.00 43.57 1.82
53 54 7.809546 TGGATGTAGTGTGAACATACAAAAA 57.190 32.000 0.00 0.00 43.57 1.94
57 58 5.859495 TGTTGGATGTAGTGTGAACATACA 58.141 37.500 0.00 0.00 44.57 2.29
58 59 6.795098 TTGTTGGATGTAGTGTGAACATAC 57.205 37.500 0.00 0.00 37.69 2.39
59 60 6.939730 ACATTGTTGGATGTAGTGTGAACATA 59.060 34.615 0.00 0.00 38.43 2.29
60 61 5.769662 ACATTGTTGGATGTAGTGTGAACAT 59.230 36.000 0.00 0.00 38.43 2.71
61 62 5.008514 CACATTGTTGGATGTAGTGTGAACA 59.991 40.000 0.00 0.00 38.15 3.18
62 63 5.008613 ACACATTGTTGGATGTAGTGTGAAC 59.991 40.000 9.29 0.00 38.15 3.18
63 64 5.129634 ACACATTGTTGGATGTAGTGTGAA 58.870 37.500 9.29 0.00 38.15 3.18
64 65 4.713553 ACACATTGTTGGATGTAGTGTGA 58.286 39.130 9.29 0.00 38.15 3.58
101 102 8.587950 CACAAGCGTAAGTTTTCACAATTTTTA 58.412 29.630 0.00 0.00 39.40 1.52
102 103 7.452231 CACAAGCGTAAGTTTTCACAATTTTT 58.548 30.769 0.00 0.00 39.40 1.94
104 105 5.005299 GCACAAGCGTAAGTTTTCACAATTT 59.995 36.000 0.00 0.00 39.40 1.82
105 106 4.502645 GCACAAGCGTAAGTTTTCACAATT 59.497 37.500 0.00 0.00 39.40 2.32
132 133 5.359576 GTGCACCCAGTTATGAAATAATCCA 59.640 40.000 5.22 0.00 41.51 3.41
133 134 5.359576 TGTGCACCCAGTTATGAAATAATCC 59.640 40.000 15.69 0.00 41.51 3.01
257 268 2.775911 ATCATGTCATCGGCTATGGG 57.224 50.000 0.00 0.00 36.15 4.00
339 350 2.146342 GACGGGGCATCAGATGTTATG 58.854 52.381 12.18 3.28 0.00 1.90
357 368 1.076332 GTATGTGGTTGTGGAGCGAC 58.924 55.000 0.00 0.00 0.00 5.19
381 393 4.038162 AGAAAGAAGAGAGTACAAGCGTGT 59.962 41.667 10.83 10.83 42.09 4.49
408 420 5.832539 TGGGATGAGAGAAAAGAAGAAGT 57.167 39.130 0.00 0.00 0.00 3.01
438 450 5.116983 GTGTGATGTGTTCAATAAAAAGGCG 59.883 40.000 0.00 0.00 35.70 5.52
464 1215 6.070021 TGTCTCCCTGATCATAATTCAACAGT 60.070 38.462 0.00 0.00 0.00 3.55
466 1217 6.312141 TGTCTCCCTGATCATAATTCAACA 57.688 37.500 0.00 0.00 0.00 3.33
531 1282 4.816925 AGTGCAAAGAGTTTAGTCACCTTC 59.183 41.667 0.00 0.00 0.00 3.46
536 1287 6.204688 CCATACAAGTGCAAAGAGTTTAGTCA 59.795 38.462 0.00 0.00 0.00 3.41
561 1312 0.028902 GGTGACTGAAAACGTGGCAC 59.971 55.000 7.79 7.79 0.00 5.01
586 1337 9.100197 ACACCCTTCTTATTTTGATAAAATGGT 57.900 29.630 9.19 4.81 41.01 3.55
588 1339 9.369904 CCACACCCTTCTTATTTTGATAAAATG 57.630 33.333 9.19 0.00 41.01 2.32
604 1355 3.643792 ACTGAGATATAGCCACACCCTTC 59.356 47.826 0.00 0.00 0.00 3.46
623 1374 7.827819 TGGTTAAATCTCAGTCGATTAACTG 57.172 36.000 12.68 5.78 46.54 3.16
624 1375 8.095169 ACTTGGTTAAATCTCAGTCGATTAACT 58.905 33.333 12.68 0.00 33.47 2.24
625 1376 8.252964 ACTTGGTTAAATCTCAGTCGATTAAC 57.747 34.615 6.91 6.91 33.47 2.01
626 1377 8.311836 AGACTTGGTTAAATCTCAGTCGATTAA 58.688 33.333 0.00 0.00 33.47 1.40
627 1378 7.837863 AGACTTGGTTAAATCTCAGTCGATTA 58.162 34.615 0.00 0.00 33.47 1.75
688 1498 7.876936 ATCTTACATTGAGATCTGTGCAATT 57.123 32.000 0.00 0.00 30.37 2.32
689 1499 7.493743 GATCTTACATTGAGATCTGTGCAAT 57.506 36.000 0.00 0.58 43.88 3.56
763 1573 7.872483 TCCCTGCATTTTCTTTACTGATTTTTC 59.128 33.333 0.00 0.00 0.00 2.29
857 1668 1.498865 ATGGATTTGATCGGCGCGTC 61.499 55.000 8.43 3.30 0.00 5.19
1230 2053 2.794820 AAACAGCTGAGGCGAGGCTC 62.795 60.000 23.35 18.23 44.37 4.70
1318 2151 1.505807 CCGGCATTGCATCGAACAA 59.494 52.632 11.39 6.69 0.00 2.83
1357 2190 4.202233 ACATGGCAGTCTCATAGTCTCATG 60.202 45.833 0.00 0.00 36.51 3.07
1362 2195 2.611292 GCAACATGGCAGTCTCATAGTC 59.389 50.000 0.00 0.00 0.00 2.59
1380 2213 2.555782 GACGCGAACTGCATGCAA 59.444 55.556 22.88 5.74 46.97 4.08
1384 2217 2.809601 GTCCGACGCGAACTGCAT 60.810 61.111 15.93 0.00 46.97 3.96
1396 2229 3.059982 CACAGCCTTCCAGTCCGA 58.940 61.111 0.00 0.00 0.00 4.55
1594 2427 1.019805 GCTGAAAGTAGTGGGGCGAC 61.020 60.000 0.00 0.00 35.30 5.19
1610 2443 2.572191 TTTGTATCTACGGTCGGCTG 57.428 50.000 0.00 0.00 0.00 4.85
1623 2456 7.099120 GCCTCTTGAATTGTTTCCATTTGTAT 58.901 34.615 0.00 0.00 0.00 2.29
1647 2480 2.334946 TTCACCAGCTGCAATCCGC 61.335 57.895 8.66 0.00 42.89 5.54
1669 2502 8.522830 CCAAAACAGACACAGACCATATAAATT 58.477 33.333 0.00 0.00 0.00 1.82
1671 2504 6.072175 GCCAAAACAGACACAGACCATATAAA 60.072 38.462 0.00 0.00 0.00 1.40
1674 2507 3.758554 GCCAAAACAGACACAGACCATAT 59.241 43.478 0.00 0.00 0.00 1.78
1707 2540 6.480763 TGTAACATCTTGAATTGGCCTCTTA 58.519 36.000 3.32 0.00 0.00 2.10
1710 2543 5.643379 TTGTAACATCTTGAATTGGCCTC 57.357 39.130 3.32 0.00 0.00 4.70
1716 2549 8.164070 ACTAGGTCCTTTGTAACATCTTGAATT 58.836 33.333 0.00 0.00 0.00 2.17
1777 2610 3.733443 AAGCATGACAAAAGGGACAAC 57.267 42.857 0.00 0.00 0.00 3.32
1835 2672 6.984474 GGCTACTAGCTACAAATGAATGTGTA 59.016 38.462 7.99 0.00 41.99 2.90
2078 2916 4.771114 TTGAAGGACAGTTTCTTGGAGA 57.229 40.909 0.00 0.00 0.00 3.71
2112 2950 6.408206 GCCACTATCAGAACCAGGTTTACTAT 60.408 42.308 6.21 1.35 0.00 2.12
2121 3005 2.636830 CCAAGCCACTATCAGAACCAG 58.363 52.381 0.00 0.00 0.00 4.00
2123 3007 1.383523 GCCAAGCCACTATCAGAACC 58.616 55.000 0.00 0.00 0.00 3.62
2138 3022 2.041620 AGGCTGTAATTGAGAAGGCCAA 59.958 45.455 5.01 0.00 40.40 4.52
2189 3073 5.331902 CACAACCAAAACTGTCAGTGTAAG 58.668 41.667 6.18 0.00 0.00 2.34
2234 3119 3.689161 TGGTGCTCATTTGGTCGAAATAG 59.311 43.478 0.00 0.00 32.65 1.73
2315 3200 6.876257 TCTCAGAGAATACAAGCTTCTTTTCC 59.124 38.462 0.00 0.00 33.18 3.13
2682 3567 4.009675 TGCAGGCGATTTTACTGAGAAAT 58.990 39.130 0.00 0.00 34.21 2.17
2790 3676 8.929260 TTAAGATCATATTCCTGATGTGCATT 57.071 30.769 0.00 0.00 36.01 3.56
2791 3677 8.957466 CATTAAGATCATATTCCTGATGTGCAT 58.043 33.333 0.00 0.00 36.01 3.96
2820 3706 7.927629 CCCTAAAACACTGCATTATAATTGCAT 59.072 33.333 17.29 8.64 37.95 3.96
2922 3810 4.081142 TCTGATTCAAGATAAGACGCCCAA 60.081 41.667 0.00 0.00 0.00 4.12
2961 3849 3.878778 AGGGAATGCAAGTATGTCAGAC 58.121 45.455 0.00 0.00 0.00 3.51
2985 3873 1.271597 CCTTGACTTCTCCCTGGTTGG 60.272 57.143 0.00 0.00 0.00 3.77
2989 3877 2.703007 CCTATCCTTGACTTCTCCCTGG 59.297 54.545 0.00 0.00 0.00 4.45
3116 4004 7.010552 CCACTCCTAAACGAATGAAGTTGATAG 59.989 40.741 0.00 0.00 31.43 2.08
3117 4005 6.816640 CCACTCCTAAACGAATGAAGTTGATA 59.183 38.462 0.00 0.00 31.43 2.15
3157 4045 5.806818 TCGGGTTCCTACAAAACATGATTA 58.193 37.500 0.00 0.00 0.00 1.75
3202 4090 3.505480 ATTTCTGGAGGAGATGATGCC 57.495 47.619 0.00 0.00 0.00 4.40
3223 4111 4.263243 CCATCAAGTCCTGGAAGAAGTTCT 60.263 45.833 0.00 0.00 34.07 3.01
3342 4230 6.869206 ATACATACAGGTATACCATGGACC 57.131 41.667 23.87 16.15 38.89 4.46
3356 4266 5.588240 TCACGGCAGAACTTATACATACAG 58.412 41.667 0.00 0.00 0.00 2.74
3367 4277 1.620819 ACAGAAGATCACGGCAGAACT 59.379 47.619 0.00 0.00 0.00 3.01
3496 4406 3.146618 AGTGTGCTTTAGGACGATACG 57.853 47.619 0.00 0.00 39.39 3.06
3519 4429 5.005779 GTGGCAGTTTCGATGAGTAGTAATG 59.994 44.000 0.00 0.00 0.00 1.90
3524 4434 2.093973 AGGTGGCAGTTTCGATGAGTAG 60.094 50.000 0.00 0.00 0.00 2.57
3536 4446 3.115390 ACCATACTTATCAGGTGGCAGT 58.885 45.455 0.00 0.00 34.69 4.40
3537 4447 3.470709 CACCATACTTATCAGGTGGCAG 58.529 50.000 0.00 0.00 45.96 4.85
3544 4454 7.453393 ACCCAATACATCACCATACTTATCAG 58.547 38.462 0.00 0.00 0.00 2.90
3548 4458 6.844388 AGAGACCCAATACATCACCATACTTA 59.156 38.462 0.00 0.00 0.00 2.24
3549 4459 5.667626 AGAGACCCAATACATCACCATACTT 59.332 40.000 0.00 0.00 0.00 2.24
3575 4485 1.382522 CTGGCACCTGCATAACGAAT 58.617 50.000 0.00 0.00 44.36 3.34
3667 4582 5.477291 TGCCCACCGAAAGAAAATAATACAA 59.523 36.000 0.00 0.00 0.00 2.41
3669 4584 5.124936 ACTGCCCACCGAAAGAAAATAATAC 59.875 40.000 0.00 0.00 0.00 1.89
3687 4603 3.270877 CAGTAGTACAATGGAACTGCCC 58.729 50.000 2.52 0.00 34.97 5.36
3741 4657 4.460263 TGTAGCATTTGTTCTGTTGACCT 58.540 39.130 0.00 0.00 0.00 3.85
3758 4674 3.838244 TGTTGGTCTATGGGATGTAGC 57.162 47.619 0.00 0.00 0.00 3.58
3825 4741 0.739462 TTTACGGCTCGCAGGACATG 60.739 55.000 0.00 0.00 0.00 3.21
3838 4754 1.808411 ACAGATGGCAGTGTTTACGG 58.192 50.000 0.00 0.00 0.00 4.02
3899 4821 2.161855 TCATTCCATGGCTTCACACAC 58.838 47.619 6.96 0.00 0.00 3.82
3924 4846 0.732538 GGCACGGCTGTAAACATTGC 60.733 55.000 0.00 0.00 0.00 3.56
3938 4860 4.746361 TGGCATGTTTTTGGCACG 57.254 50.000 0.00 0.00 46.02 5.34
3985 4909 4.102996 TGCCTGTGTGTGATATATGGACAT 59.897 41.667 0.00 0.00 0.00 3.06
4008 5031 8.806146 AGAAGACAAGGTGTTTATTGCATAAAT 58.194 29.630 0.00 0.00 37.11 1.40
4014 5037 4.712763 CGAGAAGACAAGGTGTTTATTGC 58.287 43.478 0.00 0.00 0.00 3.56
4043 5066 3.126001 TGAAGACTTGGCCTACAGTTG 57.874 47.619 3.32 0.00 0.00 3.16
4190 5213 2.747855 GAACCTTCAGGCAGGCGG 60.748 66.667 0.00 0.00 37.47 6.13
4191 5214 2.747855 GGAACCTTCAGGCAGGCG 60.748 66.667 0.00 0.00 37.47 5.52
4242 5274 7.337480 TGTCGTTTAGGCTTCAGTATGTATA 57.663 36.000 0.00 0.00 37.40 1.47
4247 5279 3.195825 AGCTGTCGTTTAGGCTTCAGTAT 59.804 43.478 0.00 0.00 0.00 2.12
4248 5280 2.561419 AGCTGTCGTTTAGGCTTCAGTA 59.439 45.455 0.00 0.00 0.00 2.74
4249 5281 1.344763 AGCTGTCGTTTAGGCTTCAGT 59.655 47.619 0.00 0.00 0.00 3.41
4250 5282 2.086054 AGCTGTCGTTTAGGCTTCAG 57.914 50.000 0.00 0.00 0.00 3.02
4268 5300 0.448990 CACCATGCATGTCGACCAAG 59.551 55.000 24.58 9.57 0.00 3.61
4271 5303 2.793946 GCACCATGCATGTCGACC 59.206 61.111 24.58 5.29 44.26 4.79
4362 5395 4.349503 AGCCAGGTGATTGCCGCA 62.350 61.111 0.00 0.00 0.00 5.69
4378 5411 2.618709 GGGTTCAGTTGGTTCAGTTCAG 59.381 50.000 0.00 0.00 0.00 3.02
4379 5412 2.241176 AGGGTTCAGTTGGTTCAGTTCA 59.759 45.455 0.00 0.00 0.00 3.18
4380 5413 2.879026 GAGGGTTCAGTTGGTTCAGTTC 59.121 50.000 0.00 0.00 0.00 3.01
4381 5414 2.241176 TGAGGGTTCAGTTGGTTCAGTT 59.759 45.455 0.00 0.00 0.00 3.16
4382 5415 1.843851 TGAGGGTTCAGTTGGTTCAGT 59.156 47.619 0.00 0.00 0.00 3.41
4402 5435 7.632898 GCATATACATATACACGGGAACTCCAT 60.633 40.741 0.00 0.00 37.91 3.41
4403 5436 6.350696 GCATATACATATACACGGGAACTCCA 60.351 42.308 0.00 0.00 37.91 3.86
4427 5460 9.758470 CAAACGTACGCATTTATATTTATTTGC 57.242 29.630 16.72 0.00 0.00 3.68
4428 5461 9.758470 GCAAACGTACGCATTTATATTTATTTG 57.242 29.630 16.72 13.81 0.00 2.32
4429 5462 9.724839 AGCAAACGTACGCATTTATATTTATTT 57.275 25.926 16.72 0.34 0.00 1.40
4432 5465 9.635632 GTTAGCAAACGTACGCATTTATATTTA 57.364 29.630 16.72 0.00 0.00 1.40
4458 5491 4.394712 AGTTTCTGCTCCCCGCCG 62.395 66.667 0.00 0.00 38.05 6.46
4463 5496 0.249911 ACGACACAGTTTCTGCTCCC 60.250 55.000 0.00 0.00 34.37 4.30
4498 5539 1.064296 CACCGCTGCTAGTCCTACG 59.936 63.158 0.00 0.00 0.00 3.51
4499 5540 1.437986 CCACCGCTGCTAGTCCTAC 59.562 63.158 0.00 0.00 0.00 3.18
4500 5541 2.423898 GCCACCGCTGCTAGTCCTA 61.424 63.158 0.00 0.00 0.00 2.94
4501 5542 3.775654 GCCACCGCTGCTAGTCCT 61.776 66.667 0.00 0.00 0.00 3.85
4502 5543 4.082523 TGCCACCGCTGCTAGTCC 62.083 66.667 0.00 0.00 35.36 3.85
4504 5545 2.362369 ATCTGCCACCGCTGCTAGT 61.362 57.895 0.00 0.00 35.36 2.57
4505 5546 1.886313 CATCTGCCACCGCTGCTAG 60.886 63.158 0.00 0.00 35.36 3.42
4520 5567 2.485814 GAGGAACACAAAGTGAGCCATC 59.514 50.000 3.88 0.00 36.96 3.51
4538 5585 3.975670 CGCTACTAGTTGCTATTTCGAGG 59.024 47.826 23.62 4.58 0.00 4.63
4539 5586 4.599047 ACGCTACTAGTTGCTATTTCGAG 58.401 43.478 23.62 10.41 0.00 4.04
4556 5603 3.645286 GCGACCAACCAAACGCTA 58.355 55.556 0.00 0.00 46.06 4.26
4584 5631 3.173390 GATTCAGGTCATGGCGCGC 62.173 63.158 25.94 25.94 0.00 6.86
4585 5632 1.493950 GAGATTCAGGTCATGGCGCG 61.494 60.000 0.00 0.00 0.00 6.86
4586 5633 1.493950 CGAGATTCAGGTCATGGCGC 61.494 60.000 0.00 0.00 0.00 6.53
4623 5670 3.502191 TTGACTGTTTGAAGTTGCCAC 57.498 42.857 0.00 0.00 0.00 5.01
4624 5671 4.734398 ATTTGACTGTTTGAAGTTGCCA 57.266 36.364 0.00 0.00 0.00 4.92
4625 5672 4.270808 CCAATTTGACTGTTTGAAGTTGCC 59.729 41.667 0.00 0.00 0.00 4.52
4626 5673 4.270808 CCCAATTTGACTGTTTGAAGTTGC 59.729 41.667 0.00 0.00 0.00 4.17
4627 5674 5.291614 CACCCAATTTGACTGTTTGAAGTTG 59.708 40.000 0.00 0.00 0.00 3.16
4628 5675 5.418676 CACCCAATTTGACTGTTTGAAGTT 58.581 37.500 0.00 0.00 0.00 2.66
4629 5676 4.141959 CCACCCAATTTGACTGTTTGAAGT 60.142 41.667 0.00 0.00 0.00 3.01
4630 5677 4.370917 CCACCCAATTTGACTGTTTGAAG 58.629 43.478 0.00 0.00 0.00 3.02
4631 5678 3.133721 CCCACCCAATTTGACTGTTTGAA 59.866 43.478 0.00 0.00 0.00 2.69
4632 5679 2.697751 CCCACCCAATTTGACTGTTTGA 59.302 45.455 0.00 0.00 0.00 2.69
4685 5736 6.003326 TGATTGCAGACTATCTTTGTCCAAA 58.997 36.000 0.00 0.00 35.21 3.28
4703 5754 1.466856 TGCTGACCCAGATTGATTGC 58.533 50.000 0.00 0.00 32.44 3.56
4778 5829 4.215613 GGCTTTAATTAATCGCTACCCCAG 59.784 45.833 15.40 2.33 0.00 4.45
4782 5833 3.364664 GCCGGCTTTAATTAATCGCTACC 60.365 47.826 22.15 5.01 0.00 3.18
4786 5837 1.662026 CGGCCGGCTTTAATTAATCGC 60.662 52.381 28.56 3.07 0.00 4.58
4814 6046 4.150098 CGTGTCACTTTTTCACTAGCCTAC 59.850 45.833 0.65 0.00 0.00 3.18
4836 6068 1.389853 CGTACGTCTGCATCATCTCG 58.610 55.000 7.22 0.00 0.00 4.04
4980 6216 2.783122 TTAAATTTGGCGGGGCGGGA 62.783 55.000 0.00 0.00 0.00 5.14
4981 6217 1.889530 TTTAAATTTGGCGGGGCGGG 61.890 55.000 0.00 0.00 0.00 6.13
4982 6218 0.037232 TTTTAAATTTGGCGGGGCGG 60.037 50.000 0.00 0.00 0.00 6.13
4983 6219 1.355005 CTTTTAAATTTGGCGGGGCG 58.645 50.000 0.00 0.00 0.00 6.13
4984 6220 1.677518 CCCTTTTAAATTTGGCGGGGC 60.678 52.381 0.00 0.00 0.00 5.80
4985 6221 1.677518 GCCCTTTTAAATTTGGCGGGG 60.678 52.381 14.55 13.96 35.98 5.73
5025 6261 0.975556 TAGCTCACAAGGCGGATCCA 60.976 55.000 13.41 0.00 37.29 3.41
5031 6267 1.959042 ATCCAATAGCTCACAAGGCG 58.041 50.000 0.00 0.00 34.52 5.52
5055 6291 2.199236 GAACCTAACGGCCATCTTACG 58.801 52.381 2.24 0.00 0.00 3.18
5056 6292 3.255969 TGAACCTAACGGCCATCTTAC 57.744 47.619 2.24 0.00 0.00 2.34
5062 6298 0.470766 ACAGTTGAACCTAACGGCCA 59.529 50.000 2.24 0.00 35.73 5.36
5063 6299 0.872388 CACAGTTGAACCTAACGGCC 59.128 55.000 0.00 0.00 35.73 6.13
5064 6300 1.798813 CTCACAGTTGAACCTAACGGC 59.201 52.381 0.00 0.00 35.73 5.68
5065 6301 1.798813 GCTCACAGTTGAACCTAACGG 59.201 52.381 0.00 0.00 35.73 4.44
5066 6302 2.755650 AGCTCACAGTTGAACCTAACG 58.244 47.619 0.00 0.00 35.73 3.18
5067 6303 4.789802 GCAAAGCTCACAGTTGAACCTAAC 60.790 45.833 0.00 0.00 0.00 2.34
5068 6304 3.315191 GCAAAGCTCACAGTTGAACCTAA 59.685 43.478 0.00 0.00 0.00 2.69
5069 6305 2.878406 GCAAAGCTCACAGTTGAACCTA 59.122 45.455 0.00 0.00 0.00 3.08
5070 6306 1.678101 GCAAAGCTCACAGTTGAACCT 59.322 47.619 0.00 0.00 0.00 3.50
5071 6307 1.405105 TGCAAAGCTCACAGTTGAACC 59.595 47.619 0.00 0.00 0.00 3.62
5072 6308 2.849880 TGCAAAGCTCACAGTTGAAC 57.150 45.000 0.00 0.00 0.00 3.18
5073 6309 2.491298 TGTTGCAAAGCTCACAGTTGAA 59.509 40.909 0.00 0.00 0.00 2.69
5074 6310 2.090760 TGTTGCAAAGCTCACAGTTGA 58.909 42.857 0.00 0.00 0.00 3.18
5075 6311 2.565210 TGTTGCAAAGCTCACAGTTG 57.435 45.000 0.00 0.00 0.00 3.16
5076 6312 3.130869 TCATTGTTGCAAAGCTCACAGTT 59.869 39.130 0.00 0.00 0.00 3.16
5077 6313 2.689471 TCATTGTTGCAAAGCTCACAGT 59.311 40.909 0.00 0.00 0.00 3.55
5078 6314 3.358707 TCATTGTTGCAAAGCTCACAG 57.641 42.857 0.00 0.00 0.00 3.66
5079 6315 3.318557 TCATCATTGTTGCAAAGCTCACA 59.681 39.130 0.00 0.00 0.00 3.58
5080 6316 3.904571 TCATCATTGTTGCAAAGCTCAC 58.095 40.909 0.00 0.00 0.00 3.51
5081 6317 4.021807 ACATCATCATTGTTGCAAAGCTCA 60.022 37.500 0.00 0.00 0.00 4.26
5082 6318 4.491676 ACATCATCATTGTTGCAAAGCTC 58.508 39.130 0.00 0.00 0.00 4.09
5083 6319 4.530710 ACATCATCATTGTTGCAAAGCT 57.469 36.364 0.00 0.00 0.00 3.74
5084 6320 5.600908 AAACATCATCATTGTTGCAAAGC 57.399 34.783 0.00 0.00 37.38 3.51
5085 6321 5.403166 ACGAAACATCATCATTGTTGCAAAG 59.597 36.000 0.00 0.00 37.38 2.77
5086 6322 5.288015 ACGAAACATCATCATTGTTGCAAA 58.712 33.333 0.00 0.00 37.38 3.68
5087 6323 4.869215 ACGAAACATCATCATTGTTGCAA 58.131 34.783 0.00 0.00 37.38 4.08
5088 6324 4.502171 ACGAAACATCATCATTGTTGCA 57.498 36.364 0.00 0.00 37.38 4.08
5089 6325 4.029418 CGAACGAAACATCATCATTGTTGC 59.971 41.667 0.00 0.00 37.38 4.17
5090 6326 4.554586 CCGAACGAAACATCATCATTGTTG 59.445 41.667 0.00 0.00 37.38 3.33
5091 6327 4.454161 TCCGAACGAAACATCATCATTGTT 59.546 37.500 0.00 0.00 38.91 2.83
5092 6328 4.000325 TCCGAACGAAACATCATCATTGT 59.000 39.130 0.00 0.00 0.00 2.71
5093 6329 4.598406 TCCGAACGAAACATCATCATTG 57.402 40.909 0.00 0.00 0.00 2.82
5094 6330 4.635765 ACATCCGAACGAAACATCATCATT 59.364 37.500 0.00 0.00 0.00 2.57
5095 6331 4.191544 ACATCCGAACGAAACATCATCAT 58.808 39.130 0.00 0.00 0.00 2.45
5096 6332 3.595173 ACATCCGAACGAAACATCATCA 58.405 40.909 0.00 0.00 0.00 3.07
5097 6333 4.600012 AACATCCGAACGAAACATCATC 57.400 40.909 0.00 0.00 0.00 2.92
5098 6334 4.722194 CAAACATCCGAACGAAACATCAT 58.278 39.130 0.00 0.00 0.00 2.45
5099 6335 3.608241 GCAAACATCCGAACGAAACATCA 60.608 43.478 0.00 0.00 0.00 3.07
5100 6336 2.908626 GCAAACATCCGAACGAAACATC 59.091 45.455 0.00 0.00 0.00 3.06
5101 6337 2.292016 TGCAAACATCCGAACGAAACAT 59.708 40.909 0.00 0.00 0.00 2.71
5102 6338 1.671328 TGCAAACATCCGAACGAAACA 59.329 42.857 0.00 0.00 0.00 2.83
5103 6339 2.392933 TGCAAACATCCGAACGAAAC 57.607 45.000 0.00 0.00 0.00 2.78
5122 6358 4.202441 AGTTCTGCAACATCAACTCTGTT 58.798 39.130 0.00 0.00 37.31 3.16
5123 6359 3.812053 GAGTTCTGCAACATCAACTCTGT 59.188 43.478 11.86 0.00 41.01 3.41
5124 6360 3.811497 TGAGTTCTGCAACATCAACTCTG 59.189 43.478 16.70 0.00 43.47 3.35
5125 6361 4.077300 TGAGTTCTGCAACATCAACTCT 57.923 40.909 16.70 0.00 43.47 3.24
5126 6362 4.720090 CATGAGTTCTGCAACATCAACTC 58.280 43.478 12.09 12.09 43.40 3.01
5127 6363 3.057736 GCATGAGTTCTGCAACATCAACT 60.058 43.478 0.00 0.00 39.46 3.16
5128 6364 3.240069 GCATGAGTTCTGCAACATCAAC 58.760 45.455 0.00 0.00 39.46 3.18
5129 6365 2.095617 CGCATGAGTTCTGCAACATCAA 60.096 45.455 0.00 0.00 39.64 2.57
5130 6366 1.465777 CGCATGAGTTCTGCAACATCA 59.534 47.619 0.00 0.00 39.64 3.07
5131 6367 1.733912 TCGCATGAGTTCTGCAACATC 59.266 47.619 0.00 0.00 39.64 3.06
5132 6368 1.812235 TCGCATGAGTTCTGCAACAT 58.188 45.000 0.00 0.00 39.64 2.71
5133 6369 1.465777 CATCGCATGAGTTCTGCAACA 59.534 47.619 0.00 0.00 39.64 3.33
5134 6370 1.733912 TCATCGCATGAGTTCTGCAAC 59.266 47.619 0.00 0.00 39.64 4.17
5135 6371 2.097680 TCATCGCATGAGTTCTGCAA 57.902 45.000 0.00 0.00 39.64 4.08
5136 6372 2.004733 CTTCATCGCATGAGTTCTGCA 58.995 47.619 0.00 0.00 40.94 4.41
5137 6373 1.329906 CCTTCATCGCATGAGTTCTGC 59.670 52.381 0.00 0.00 40.94 4.26
5138 6374 2.625737 ACCTTCATCGCATGAGTTCTG 58.374 47.619 0.00 0.00 40.94 3.02
5139 6375 4.679373 ATACCTTCATCGCATGAGTTCT 57.321 40.909 0.00 0.00 40.94 3.01
5140 6376 4.553547 GCAATACCTTCATCGCATGAGTTC 60.554 45.833 0.00 0.00 40.94 3.01
5141 6377 3.313526 GCAATACCTTCATCGCATGAGTT 59.686 43.478 0.00 0.00 40.94 3.01
5142 6378 2.874701 GCAATACCTTCATCGCATGAGT 59.125 45.455 0.00 0.00 40.94 3.41
5143 6379 3.059120 CAGCAATACCTTCATCGCATGAG 60.059 47.826 0.00 0.00 40.94 2.90
5144 6380 2.874086 CAGCAATACCTTCATCGCATGA 59.126 45.455 0.00 0.00 37.55 3.07
5145 6381 2.603892 GCAGCAATACCTTCATCGCATG 60.604 50.000 0.00 0.00 0.00 4.06
5146 6382 1.605710 GCAGCAATACCTTCATCGCAT 59.394 47.619 0.00 0.00 0.00 4.73
5147 6383 1.016627 GCAGCAATACCTTCATCGCA 58.983 50.000 0.00 0.00 0.00 5.10
5148 6384 1.016627 TGCAGCAATACCTTCATCGC 58.983 50.000 0.00 0.00 0.00 4.58
5149 6385 3.127548 AGTTTGCAGCAATACCTTCATCG 59.872 43.478 9.12 0.00 0.00 3.84
5150 6386 4.708726 AGTTTGCAGCAATACCTTCATC 57.291 40.909 9.12 0.00 0.00 2.92
5151 6387 5.473066 AAAGTTTGCAGCAATACCTTCAT 57.527 34.783 9.12 0.00 0.00 2.57
5152 6388 4.935352 AAAGTTTGCAGCAATACCTTCA 57.065 36.364 9.12 0.00 0.00 3.02
5153 6389 7.889589 AATAAAAGTTTGCAGCAATACCTTC 57.110 32.000 9.12 0.00 0.00 3.46
5154 6390 8.675705 AAAATAAAAGTTTGCAGCAATACCTT 57.324 26.923 9.12 8.81 0.00 3.50
5155 6391 8.675705 AAAAATAAAAGTTTGCAGCAATACCT 57.324 26.923 9.12 2.67 0.00 3.08


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.