Multiple sequence alignment - TraesCS5B01G532700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G532700 chr5B 100.000 4436 0 0 1 4436 689998719 689994284 0.000000e+00 8192.0
1 TraesCS5B01G532700 chr5B 79.905 2319 432 26 1119 3411 262356909 262354599 0.000000e+00 1670.0
2 TraesCS5B01G532700 chr5B 91.954 87 3 4 4079 4164 330847830 330847747 7.790000e-23 119.0
3 TraesCS5B01G532700 chr5B 91.954 87 4 3 4079 4163 440199375 440199460 7.790000e-23 119.0
4 TraesCS5B01G532700 chr5B 83.158 95 10 6 3956 4045 163102229 163102322 1.020000e-11 82.4
5 TraesCS5B01G532700 chr5B 97.917 48 0 1 3999 4045 590248382 590248429 1.020000e-11 82.4
6 TraesCS5B01G532700 chr5D 89.425 2714 244 23 869 3572 546687629 546690309 0.000000e+00 3382.0
7 TraesCS5B01G532700 chr5D 79.794 2331 437 23 1107 3411 241271668 241273990 0.000000e+00 1664.0
8 TraesCS5B01G532700 chr5D 93.169 366 22 3 77 441 546686745 546687108 6.530000e-148 534.0
9 TraesCS5B01G532700 chr5D 89.163 203 18 4 633 833 546687428 546687628 2.650000e-62 250.0
10 TraesCS5B01G532700 chr5D 86.747 166 15 3 437 595 546687161 546687326 1.270000e-40 178.0
11 TraesCS5B01G532700 chr5D 92.857 84 4 2 4080 4162 10367313 10367231 2.170000e-23 121.0
12 TraesCS5B01G532700 chr5D 97.826 46 1 0 3577 3622 231356318 231356363 3.680000e-11 80.5
13 TraesCS5B01G532700 chr5D 89.286 56 4 2 3956 4009 234857584 234857529 7.960000e-08 69.4
14 TraesCS5B01G532700 chr5D 90.566 53 3 2 3947 3997 418431154 418431102 7.960000e-08 69.4
15 TraesCS5B01G532700 chr4A 89.320 2575 241 20 869 3441 622238130 622235588 0.000000e+00 3201.0
16 TraesCS5B01G532700 chr4A 91.758 364 23 6 78 441 622238991 622238635 2.380000e-137 499.0
17 TraesCS5B01G532700 chr4A 90.652 353 15 5 3618 3955 622235428 622235079 1.880000e-123 453.0
18 TraesCS5B01G532700 chr4A 94.094 254 13 1 4156 4407 622235077 622234824 6.960000e-103 385.0
19 TraesCS5B01G532700 chr4A 75.260 768 186 4 2385 3150 465543984 465544749 3.260000e-96 363.0
20 TraesCS5B01G532700 chr4A 90.547 201 17 2 633 833 622238329 622238131 9.460000e-67 265.0
21 TraesCS5B01G532700 chr4A 87.349 166 15 3 437 596 622238583 622238418 7.580000e-43 185.0
22 TraesCS5B01G532700 chr4A 92.135 89 4 3 4079 4165 38740453 38740540 6.030000e-24 122.0
23 TraesCS5B01G532700 chr4A 100.000 44 0 0 3577 3620 82849229 82849186 1.020000e-11 82.4
24 TraesCS5B01G532700 chr5A 79.923 2331 434 22 1107 3411 310984591 310986913 0.000000e+00 1681.0
25 TraesCS5B01G532700 chr5A 91.860 86 5 2 4079 4164 466005790 466005707 7.790000e-23 119.0
26 TraesCS5B01G532700 chr4D 75.518 772 185 4 2384 3153 111589139 111588370 4.190000e-100 375.0
27 TraesCS5B01G532700 chr4B 74.935 774 186 5 2384 3153 172381604 172380835 9.130000e-92 348.0
28 TraesCS5B01G532700 chr1B 90.476 105 6 4 4053 4156 32458338 32458237 7.740000e-28 135.0
29 TraesCS5B01G532700 chr1B 86.207 87 10 2 3948 4033 626399476 626399561 4.720000e-15 93.5
30 TraesCS5B01G532700 chr1B 98.000 50 1 0 3577 3626 662158820 662158869 2.200000e-13 87.9
31 TraesCS5B01G532700 chr1B 98.000 50 1 0 3577 3626 662161373 662161422 2.200000e-13 87.9
32 TraesCS5B01G532700 chrUn 95.000 80 2 2 4079 4157 75235807 75235729 1.680000e-24 124.0
33 TraesCS5B01G532700 chr6B 92.135 89 5 2 4079 4166 380517407 380517320 1.680000e-24 124.0
34 TraesCS5B01G532700 chr6B 92.857 84 4 2 4079 4161 544634216 544634134 2.170000e-23 121.0
35 TraesCS5B01G532700 chr2B 93.976 83 2 3 4079 4160 496962172 496962092 6.030000e-24 122.0
36 TraesCS5B01G532700 chr3B 93.671 79 3 2 4079 4156 20433648 20433725 2.800000e-22 117.0
37 TraesCS5B01G532700 chr3B 95.833 48 2 0 3998 4045 475827856 475827809 1.320000e-10 78.7
38 TraesCS5B01G532700 chr3B 95.833 48 2 0 3577 3624 773102376 773102423 1.320000e-10 78.7
39 TraesCS5B01G532700 chr3A 100.000 44 0 0 3577 3620 161458321 161458278 1.020000e-11 82.4
40 TraesCS5B01G532700 chr3A 100.000 44 0 0 3577 3620 303756835 303756792 1.020000e-11 82.4
41 TraesCS5B01G532700 chr1A 100.000 44 0 0 3577 3620 527694898 527694941 1.020000e-11 82.4
42 TraesCS5B01G532700 chr2A 85.897 78 6 2 3951 4028 390881116 390881188 1.320000e-10 78.7
43 TraesCS5B01G532700 chr2A 95.918 49 1 1 3998 4045 702949442 702949490 1.320000e-10 78.7
44 TraesCS5B01G532700 chr2A 94.118 51 2 1 3577 3627 690329377 690329426 4.760000e-10 76.8
45 TraesCS5B01G532700 chr7D 97.727 44 0 1 3955 3997 602741759 602741716 1.710000e-09 75.0
46 TraesCS5B01G532700 chr7B 97.674 43 0 1 3956 3997 671765741 671765699 6.150000e-09 73.1
47 TraesCS5B01G532700 chr2D 93.878 49 2 1 3998 4045 62613794 62613842 6.150000e-09 73.1
48 TraesCS5B01G532700 chr6D 95.556 45 1 1 3954 3997 249994867 249994823 2.210000e-08 71.3
49 TraesCS5B01G532700 chr7A 86.885 61 3 5 3940 3997 36555025 36554967 3.700000e-06 63.9
50 TraesCS5B01G532700 chr7A 93.023 43 2 1 3998 4039 294406696 294406654 1.330000e-05 62.1
51 TraesCS5B01G532700 chr3D 91.667 48 1 1 3998 4045 587512957 587513001 3.700000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G532700 chr5B 689994284 689998719 4435 True 8192.000000 8192 100.000 1 4436 1 chr5B.!!$R3 4435
1 TraesCS5B01G532700 chr5B 262354599 262356909 2310 True 1670.000000 1670 79.905 1119 3411 1 chr5B.!!$R1 2292
2 TraesCS5B01G532700 chr5D 241271668 241273990 2322 False 1664.000000 1664 79.794 1107 3411 1 chr5D.!!$F2 2304
3 TraesCS5B01G532700 chr5D 546686745 546690309 3564 False 1086.000000 3382 89.626 77 3572 4 chr5D.!!$F3 3495
4 TraesCS5B01G532700 chr4A 622234824 622238991 4167 True 831.333333 3201 90.620 78 4407 6 chr4A.!!$R2 4329
5 TraesCS5B01G532700 chr4A 465543984 465544749 765 False 363.000000 363 75.260 2385 3150 1 chr4A.!!$F2 765
6 TraesCS5B01G532700 chr5A 310984591 310986913 2322 False 1681.000000 1681 79.923 1107 3411 1 chr5A.!!$F1 2304
7 TraesCS5B01G532700 chr4D 111588370 111589139 769 True 375.000000 375 75.518 2384 3153 1 chr4D.!!$R1 769
8 TraesCS5B01G532700 chr4B 172380835 172381604 769 True 348.000000 348 74.935 2384 3153 1 chr4B.!!$R1 769

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
533 599 0.253044 GAGCATCTTGGTACCCAGCA 59.747 55.0 10.07 0.0 33.81 4.41 F
1044 1176 0.110486 TTGCCACCACTTCCCTCTTC 59.890 55.0 0.00 0.0 0.00 2.87 F
1046 1178 0.322008 GCCACCACTTCCCTCTTCTG 60.322 60.0 0.00 0.0 0.00 3.02 F
1047 1179 0.322008 CCACCACTTCCCTCTTCTGC 60.322 60.0 0.00 0.0 0.00 4.26 F
1474 1615 0.396435 TGATTCGCCCACAGACACTT 59.604 50.0 0.00 0.0 0.00 3.16 F
1490 1631 0.538287 ACTTTCCTGCCAACTCAGCC 60.538 55.0 0.00 0.0 32.87 4.85 F
1636 1777 0.549950 CTGGCCAGACCCTGATCATT 59.450 55.0 29.88 0.0 37.83 2.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1694 1835 0.533308 CGACCCAAAACTCCCGTCAA 60.533 55.000 0.0 0.0 0.00 3.18 R
2299 2440 1.002430 GTCAAGATGAGGTGGTGCAGA 59.998 52.381 0.0 0.0 0.00 4.26 R
2979 3129 1.025812 AGTCGGTGATCTTAGGCTCG 58.974 55.000 0.0 0.0 0.00 5.03 R
3003 3153 4.276431 CCTCGGTTTAGTAACTTTGCCAAA 59.724 41.667 0.0 0.0 34.59 3.28 R
3231 3381 4.439700 CCTTCCAGTTTATCTGCAAGCATG 60.440 45.833 0.0 0.0 39.79 4.06 R
3256 3406 6.704289 TTCATCAATCCAAGAATCATCACC 57.296 37.500 0.0 0.0 0.00 4.02 R
3507 3690 4.768583 AGTTTTTCCACATTGTTGCACAT 58.231 34.783 0.0 0.0 0.00 3.21 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 38 9.638300 CTGATATTTCTTAACGTATTCTGTTGC 57.362 33.333 0.00 0.00 0.00 4.17
38 39 9.157104 TGATATTTCTTAACGTATTCTGTTGCA 57.843 29.630 0.00 0.00 0.00 4.08
39 40 9.982291 GATATTTCTTAACGTATTCTGTTGCAA 57.018 29.630 0.00 0.00 0.00 4.08
41 42 8.673626 ATTTCTTAACGTATTCTGTTGCAATG 57.326 30.769 0.59 0.00 0.00 2.82
42 43 6.795098 TCTTAACGTATTCTGTTGCAATGT 57.205 33.333 0.59 0.00 0.00 2.71
43 44 7.892778 TCTTAACGTATTCTGTTGCAATGTA 57.107 32.000 0.59 0.00 0.00 2.29
44 45 8.487313 TCTTAACGTATTCTGTTGCAATGTAT 57.513 30.769 0.59 1.29 0.00 2.29
45 46 8.941977 TCTTAACGTATTCTGTTGCAATGTATT 58.058 29.630 0.59 0.00 0.00 1.89
46 47 9.554724 CTTAACGTATTCTGTTGCAATGTATTT 57.445 29.630 0.59 0.00 0.00 1.40
47 48 7.795431 AACGTATTCTGTTGCAATGTATTTG 57.205 32.000 0.59 0.00 38.43 2.32
48 49 6.321717 ACGTATTCTGTTGCAATGTATTTGG 58.678 36.000 0.59 0.00 35.75 3.28
49 50 6.150307 ACGTATTCTGTTGCAATGTATTTGGA 59.850 34.615 0.59 0.00 35.75 3.53
50 51 7.026562 CGTATTCTGTTGCAATGTATTTGGAA 58.973 34.615 0.59 0.00 42.57 3.53
51 52 7.540400 CGTATTCTGTTGCAATGTATTTGGAAA 59.460 33.333 0.59 0.00 45.68 3.13
52 53 9.202273 GTATTCTGTTGCAATGTATTTGGAAAA 57.798 29.630 0.59 0.00 45.68 2.29
53 54 8.674263 ATTCTGTTGCAATGTATTTGGAAAAA 57.326 26.923 0.59 0.00 45.68 1.94
54 55 8.674263 TTCTGTTGCAATGTATTTGGAAAAAT 57.326 26.923 0.59 0.00 45.68 1.82
55 56 8.085720 TCTGTTGCAATGTATTTGGAAAAATG 57.914 30.769 0.59 0.00 45.68 2.32
56 57 7.714377 TCTGTTGCAATGTATTTGGAAAAATGT 59.286 29.630 0.59 0.00 45.68 2.71
57 58 8.218338 TGTTGCAATGTATTTGGAAAAATGTT 57.782 26.923 0.59 0.00 45.68 2.71
58 59 9.330063 TGTTGCAATGTATTTGGAAAAATGTTA 57.670 25.926 0.59 0.00 45.68 2.41
109 111 9.284968 TGATTTTTATTCCGAGTCTTTTCTTCT 57.715 29.630 0.00 0.00 0.00 2.85
181 183 0.915904 CTTGCATGTTTATTGGCGCG 59.084 50.000 0.00 0.00 0.00 6.86
322 324 4.907269 ACAAAAATGGGGAGTTTTCAGGAT 59.093 37.500 0.00 0.00 0.00 3.24
351 353 0.686769 ACTCTGTACCCGGATCCACC 60.687 60.000 13.41 0.00 0.00 4.61
352 354 0.397254 CTCTGTACCCGGATCCACCT 60.397 60.000 13.41 0.00 36.31 4.00
369 371 1.089920 CCTGACATGCCTAACACTGC 58.910 55.000 0.00 0.00 0.00 4.40
387 389 4.332819 CACTGCAGTAACCATTTACTAGGC 59.667 45.833 21.20 0.00 45.23 3.93
406 408 0.745845 CTCTGCCGGACCTTGAATGG 60.746 60.000 5.05 0.00 0.00 3.16
437 439 3.818210 TCTCAAAACGGTGTGCATACATT 59.182 39.130 15.93 6.24 39.39 2.71
438 440 4.998033 TCTCAAAACGGTGTGCATACATTA 59.002 37.500 15.93 0.00 39.39 1.90
439 441 5.121611 TCTCAAAACGGTGTGCATACATTAG 59.878 40.000 15.93 6.06 39.39 1.73
490 549 8.962884 AAAAGCTTAAATTCTTGTCATTTGGT 57.037 26.923 0.00 0.00 0.00 3.67
493 552 7.899973 AGCTTAAATTCTTGTCATTTGGTCAT 58.100 30.769 0.00 0.00 0.00 3.06
495 554 7.412237 GCTTAAATTCTTGTCATTTGGTCATGC 60.412 37.037 0.00 0.00 0.00 4.06
496 555 5.733620 AATTCTTGTCATTTGGTCATGCT 57.266 34.783 0.00 0.00 0.00 3.79
497 556 4.508461 TTCTTGTCATTTGGTCATGCTG 57.492 40.909 0.00 0.00 0.00 4.41
515 581 2.489329 GCTGCAAAGTAGAGGCAAATGA 59.511 45.455 0.00 0.00 37.06 2.57
531 597 3.287867 AATGAGCATCTTGGTACCCAG 57.712 47.619 10.07 8.23 33.81 4.45
533 599 0.253044 GAGCATCTTGGTACCCAGCA 59.747 55.000 10.07 0.00 33.81 4.41
534 600 0.698238 AGCATCTTGGTACCCAGCAA 59.302 50.000 10.07 0.00 39.77 3.91
566 632 3.423539 ACTTTCTCCATACTTGCAGCA 57.576 42.857 0.00 0.00 0.00 4.41
578 644 2.149803 TTGCAGCAGATGTGGCTTGC 62.150 55.000 0.00 0.00 40.23 4.01
596 662 5.334879 GGCTTGCATTATTCCACGTATTAGG 60.335 44.000 0.00 0.00 0.00 2.69
598 664 6.565999 GCTTGCATTATTCCACGTATTAGGTC 60.566 42.308 0.00 0.00 0.00 3.85
599 665 5.302360 TGCATTATTCCACGTATTAGGTCC 58.698 41.667 0.00 0.00 0.00 4.46
601 667 5.775686 CATTATTCCACGTATTAGGTCCGA 58.224 41.667 0.00 0.00 0.00 4.55
605 688 4.741321 TCCACGTATTAGGTCCGAAAAT 57.259 40.909 0.00 0.00 0.00 1.82
624 707 8.638565 CCGAAAATAAAAGCAAGTTAACATCAG 58.361 33.333 8.61 0.00 0.00 2.90
625 708 8.155923 CGAAAATAAAAGCAAGTTAACATCAGC 58.844 33.333 8.61 5.98 0.00 4.26
626 709 9.196552 GAAAATAAAAGCAAGTTAACATCAGCT 57.803 29.630 8.61 8.17 0.00 4.24
627 710 8.524870 AAATAAAAGCAAGTTAACATCAGCTG 57.475 30.769 7.63 7.63 31.88 4.24
628 711 5.772825 AAAAGCAAGTTAACATCAGCTGA 57.227 34.783 20.79 20.79 31.88 4.26
629 712 5.972107 AAAGCAAGTTAACATCAGCTGAT 57.028 34.783 23.75 23.75 34.56 2.90
630 713 5.557891 AAGCAAGTTAACATCAGCTGATC 57.442 39.130 26.44 14.64 31.21 2.92
631 714 4.582869 AGCAAGTTAACATCAGCTGATCA 58.417 39.130 26.44 11.77 31.21 2.92
642 773 5.129980 ACATCAGCTGATCAGTCAATTCCTA 59.870 40.000 26.44 0.00 33.05 2.94
652 783 8.200120 TGATCAGTCAATTCCTATGAGTGTTAG 58.800 37.037 10.23 0.00 44.75 2.34
655 786 6.758886 CAGTCAATTCCTATGAGTGTTAGGTC 59.241 42.308 3.73 0.00 41.31 3.85
657 788 4.939052 ATTCCTATGAGTGTTAGGTCCG 57.061 45.455 0.00 0.00 37.94 4.79
716 848 2.122547 ACAACGGAGACCCCACCT 60.123 61.111 0.00 0.00 34.14 4.00
720 852 1.057851 AACGGAGACCCCACCTTGAA 61.058 55.000 0.00 0.00 34.14 2.69
763 895 5.813383 ACATTGTCTTCATTCATCTGTCCT 58.187 37.500 0.00 0.00 0.00 3.85
796 928 4.193826 TCTCCTTGAGGACTTTTCATCG 57.806 45.455 0.00 0.00 39.78 3.84
804 936 2.039084 AGGACTTTTCATCGAGCTTGGT 59.961 45.455 0.00 0.00 0.00 3.67
806 938 3.067106 GACTTTTCATCGAGCTTGGTGA 58.933 45.455 13.23 13.23 0.00 4.02
810 942 1.079819 CATCGAGCTTGGTGACCGT 60.080 57.895 8.72 0.00 0.00 4.83
826 958 2.861935 GACCGTCAAAAGTCGAACTTGA 59.138 45.455 0.00 0.00 38.66 3.02
829 961 3.493129 CCGTCAAAAGTCGAACTTGATCA 59.507 43.478 7.97 0.00 38.66 2.92
833 965 5.904080 GTCAAAAGTCGAACTTGATCAACTG 59.096 40.000 3.38 0.00 38.66 3.16
834 966 5.815222 TCAAAAGTCGAACTTGATCAACTGA 59.185 36.000 3.38 0.00 38.66 3.41
835 967 6.483307 TCAAAAGTCGAACTTGATCAACTGAT 59.517 34.615 3.38 0.00 38.66 2.90
836 968 7.655732 TCAAAAGTCGAACTTGATCAACTGATA 59.344 33.333 3.38 0.00 38.66 2.15
837 969 8.446273 CAAAAGTCGAACTTGATCAACTGATAT 58.554 33.333 3.38 0.00 38.66 1.63
838 970 7.531280 AAGTCGAACTTGATCAACTGATATG 57.469 36.000 3.38 0.00 37.00 1.78
839 971 6.867550 AGTCGAACTTGATCAACTGATATGA 58.132 36.000 3.38 0.00 34.37 2.15
840 972 6.977502 AGTCGAACTTGATCAACTGATATGAG 59.022 38.462 3.38 0.00 34.37 2.90
841 973 6.754209 GTCGAACTTGATCAACTGATATGAGT 59.246 38.462 3.38 0.00 34.37 3.41
842 974 7.915923 GTCGAACTTGATCAACTGATATGAGTA 59.084 37.037 3.38 0.00 34.37 2.59
843 975 8.633561 TCGAACTTGATCAACTGATATGAGTAT 58.366 33.333 3.38 0.00 34.37 2.12
844 976 8.697960 CGAACTTGATCAACTGATATGAGTATG 58.302 37.037 3.38 0.00 34.37 2.39
845 977 9.539825 GAACTTGATCAACTGATATGAGTATGT 57.460 33.333 3.38 0.00 34.37 2.29
846 978 8.883954 ACTTGATCAACTGATATGAGTATGTG 57.116 34.615 3.38 0.00 34.37 3.21
847 979 8.481314 ACTTGATCAACTGATATGAGTATGTGT 58.519 33.333 3.38 0.00 34.37 3.72
848 980 9.971922 CTTGATCAACTGATATGAGTATGTGTA 57.028 33.333 3.38 0.00 34.37 2.90
850 982 9.971922 TGATCAACTGATATGAGTATGTGTAAG 57.028 33.333 0.00 0.00 34.37 2.34
851 983 9.973450 GATCAACTGATATGAGTATGTGTAAGT 57.027 33.333 0.00 0.00 34.37 2.24
853 985 9.586435 TCAACTGATATGAGTATGTGTAAGTTG 57.414 33.333 0.00 0.00 41.17 3.16
854 986 8.820933 CAACTGATATGAGTATGTGTAAGTTGG 58.179 37.037 0.00 0.00 37.94 3.77
855 987 8.306313 ACTGATATGAGTATGTGTAAGTTGGA 57.694 34.615 0.00 0.00 0.00 3.53
856 988 8.928448 ACTGATATGAGTATGTGTAAGTTGGAT 58.072 33.333 0.00 0.00 0.00 3.41
861 993 7.712204 TGAGTATGTGTAAGTTGGATACTCA 57.288 36.000 13.55 13.55 46.75 3.41
862 994 8.306313 TGAGTATGTGTAAGTTGGATACTCAT 57.694 34.615 13.55 8.89 45.29 2.90
863 995 9.416284 TGAGTATGTGTAAGTTGGATACTCATA 57.584 33.333 13.55 8.20 45.29 2.15
874 1006 7.966812 AGTTGGATACTCATATCAGTGCATTA 58.033 34.615 0.00 0.00 39.29 1.90
882 1014 8.059798 ACTCATATCAGTGCATTAAAAAGCTT 57.940 30.769 0.00 0.00 0.00 3.74
886 1018 9.142515 CATATCAGTGCATTAAAAAGCTTTTGA 57.857 29.630 24.50 15.19 0.00 2.69
888 1020 6.336566 TCAGTGCATTAAAAAGCTTTTGACA 58.663 32.000 24.50 14.83 0.00 3.58
889 1021 6.985645 TCAGTGCATTAAAAAGCTTTTGACAT 59.014 30.769 24.50 13.69 0.00 3.06
890 1022 7.042590 TCAGTGCATTAAAAAGCTTTTGACATG 60.043 33.333 24.50 23.20 0.00 3.21
891 1023 6.203338 AGTGCATTAAAAAGCTTTTGACATGG 59.797 34.615 24.50 13.11 0.00 3.66
892 1024 6.018016 GTGCATTAAAAAGCTTTTGACATGGT 60.018 34.615 24.50 9.92 0.00 3.55
893 1025 6.541641 TGCATTAAAAAGCTTTTGACATGGTT 59.458 30.769 24.50 9.21 0.00 3.67
894 1026 6.852345 GCATTAAAAAGCTTTTGACATGGTTG 59.148 34.615 24.50 13.84 0.00 3.77
897 1029 9.995003 ATTAAAAAGCTTTTGACATGGTTGATA 57.005 25.926 24.50 6.36 0.00 2.15
899 1031 6.655078 AAAGCTTTTGACATGGTTGATAGT 57.345 33.333 5.69 0.00 0.00 2.12
923 1055 1.699634 ACACTGAAGCACCCTGTATGT 59.300 47.619 0.00 0.00 0.00 2.29
924 1056 2.079158 CACTGAAGCACCCTGTATGTG 58.921 52.381 0.00 0.00 36.79 3.21
938 1070 5.118990 CCTGTATGTGTCCACCTAGAAATG 58.881 45.833 0.00 0.00 0.00 2.32
939 1071 5.104941 CCTGTATGTGTCCACCTAGAAATGA 60.105 44.000 0.00 0.00 0.00 2.57
941 1073 6.170506 TGTATGTGTCCACCTAGAAATGAAC 58.829 40.000 0.00 0.00 0.00 3.18
945 1077 3.259902 GTCCACCTAGAAATGAACGGTC 58.740 50.000 0.00 0.00 0.00 4.79
946 1078 2.235402 TCCACCTAGAAATGAACGGTCC 59.765 50.000 0.00 0.00 0.00 4.46
947 1079 2.236395 CCACCTAGAAATGAACGGTCCT 59.764 50.000 0.00 0.00 0.00 3.85
949 1081 3.195825 CACCTAGAAATGAACGGTCCTCT 59.804 47.826 0.00 0.00 0.00 3.69
950 1082 3.838903 ACCTAGAAATGAACGGTCCTCTT 59.161 43.478 0.00 0.00 0.00 2.85
951 1083 5.021458 ACCTAGAAATGAACGGTCCTCTTA 58.979 41.667 0.00 0.00 0.00 2.10
952 1084 5.661759 ACCTAGAAATGAACGGTCCTCTTAT 59.338 40.000 0.00 0.00 0.00 1.73
953 1085 6.837568 ACCTAGAAATGAACGGTCCTCTTATA 59.162 38.462 0.00 0.00 0.00 0.98
954 1086 7.343833 ACCTAGAAATGAACGGTCCTCTTATAA 59.656 37.037 0.00 0.00 0.00 0.98
955 1087 7.868415 CCTAGAAATGAACGGTCCTCTTATAAG 59.132 40.741 6.11 6.11 0.00 1.73
956 1088 7.184067 AGAAATGAACGGTCCTCTTATAAGT 57.816 36.000 12.19 0.00 0.00 2.24
971 1103 8.351461 CCTCTTATAAGTAGTAGTACTTGTGCC 58.649 40.741 26.52 0.00 46.91 5.01
975 1107 0.452987 TAGTAGTACTTGTGCCGCCG 59.547 55.000 8.40 0.00 0.00 6.46
1009 1141 1.001764 TCTGCAACCATGGCTCCTG 60.002 57.895 13.04 5.49 0.00 3.86
1015 1147 0.323178 AACCATGGCTCCTGCTCTTG 60.323 55.000 13.04 0.00 39.59 3.02
1017 1149 2.119655 CATGGCTCCTGCTCTTGCC 61.120 63.158 0.00 0.00 45.10 4.52
1039 1171 2.203480 TGCTTGCCACCACTTCCC 60.203 61.111 0.00 0.00 0.00 3.97
1041 1173 1.973812 GCTTGCCACCACTTCCCTC 60.974 63.158 0.00 0.00 0.00 4.30
1042 1174 1.763770 CTTGCCACCACTTCCCTCT 59.236 57.895 0.00 0.00 0.00 3.69
1043 1175 0.111253 CTTGCCACCACTTCCCTCTT 59.889 55.000 0.00 0.00 0.00 2.85
1044 1176 0.110486 TTGCCACCACTTCCCTCTTC 59.890 55.000 0.00 0.00 0.00 2.87
1045 1177 0.768221 TGCCACCACTTCCCTCTTCT 60.768 55.000 0.00 0.00 0.00 2.85
1046 1178 0.322008 GCCACCACTTCCCTCTTCTG 60.322 60.000 0.00 0.00 0.00 3.02
1047 1179 0.322008 CCACCACTTCCCTCTTCTGC 60.322 60.000 0.00 0.00 0.00 4.26
1048 1180 0.689623 CACCACTTCCCTCTTCTGCT 59.310 55.000 0.00 0.00 0.00 4.24
1049 1181 1.072965 CACCACTTCCCTCTTCTGCTT 59.927 52.381 0.00 0.00 0.00 3.91
1050 1182 2.303022 CACCACTTCCCTCTTCTGCTTA 59.697 50.000 0.00 0.00 0.00 3.09
1051 1183 3.054802 CACCACTTCCCTCTTCTGCTTAT 60.055 47.826 0.00 0.00 0.00 1.73
1052 1184 3.198853 ACCACTTCCCTCTTCTGCTTATC 59.801 47.826 0.00 0.00 0.00 1.75
1053 1185 3.432890 CCACTTCCCTCTTCTGCTTATCC 60.433 52.174 0.00 0.00 0.00 2.59
1054 1186 3.454082 CACTTCCCTCTTCTGCTTATCCT 59.546 47.826 0.00 0.00 0.00 3.24
1062 1194 4.029520 TCTTCTGCTTATCCTCTCTGCTT 58.970 43.478 0.00 0.00 0.00 3.91
1066 1198 5.911752 TCTGCTTATCCTCTCTGCTTTTAG 58.088 41.667 0.00 0.00 0.00 1.85
1068 1200 6.607600 TCTGCTTATCCTCTCTGCTTTTAGTA 59.392 38.462 0.00 0.00 0.00 1.82
1069 1201 6.574350 TGCTTATCCTCTCTGCTTTTAGTAC 58.426 40.000 0.00 0.00 0.00 2.73
1082 1214 5.011738 TGCTTTTAGTACCAAGAGCTGTAGT 59.988 40.000 15.56 0.00 36.77 2.73
1083 1215 6.209986 TGCTTTTAGTACCAAGAGCTGTAGTA 59.790 38.462 15.56 0.00 36.77 1.82
1084 1216 6.752815 GCTTTTAGTACCAAGAGCTGTAGTAG 59.247 42.308 8.92 0.00 33.90 2.57
1101 1233 7.833285 TGTAGTAGCACATGATATTCTACCA 57.167 36.000 0.00 0.00 32.31 3.25
1117 1249 9.976776 ATATTCTACCATTACGATCCTCTCTAA 57.023 33.333 0.00 0.00 0.00 2.10
1143 1275 2.706890 GAAGCCTTCCAAACCGACATA 58.293 47.619 0.00 0.00 0.00 2.29
1155 1287 4.910956 GACATACTGCAGTCGCCA 57.089 55.556 25.56 5.97 37.32 5.69
1184 1316 0.973632 TTCTCCTGCGGCTTCTACAA 59.026 50.000 0.00 0.00 0.00 2.41
1345 1477 1.264020 TCAAAGATTATGATGGCGCGC 59.736 47.619 25.94 25.94 0.00 6.86
1407 1548 1.399791 GCTCAGCTGTTGAATACTGGC 59.600 52.381 14.67 0.80 34.81 4.85
1441 1582 8.358148 TCTTGAAGAATACCGATGGTAAGATAC 58.642 37.037 0.00 0.00 41.85 2.24
1443 1584 7.658261 TGAAGAATACCGATGGTAAGATACTG 58.342 38.462 0.00 0.00 41.85 2.74
1461 1602 3.705604 ACTGTGGCAAAGTTTTGATTCG 58.294 40.909 3.96 0.00 40.55 3.34
1474 1615 0.396435 TGATTCGCCCACAGACACTT 59.604 50.000 0.00 0.00 0.00 3.16
1485 1626 1.212935 ACAGACACTTTCCTGCCAACT 59.787 47.619 0.00 0.00 33.90 3.16
1490 1631 0.538287 ACTTTCCTGCCAACTCAGCC 60.538 55.000 0.00 0.00 32.87 4.85
1499 1640 1.003355 CAACTCAGCCCATCACCGT 60.003 57.895 0.00 0.00 0.00 4.83
1516 1657 5.663456 TCACCGTTTCTACAAAGTTAGTGT 58.337 37.500 0.00 0.00 0.00 3.55
1517 1658 5.521010 TCACCGTTTCTACAAAGTTAGTGTG 59.479 40.000 0.00 0.00 0.00 3.82
1527 1668 5.254901 ACAAAGTTAGTGTGTACAACCCAA 58.745 37.500 0.00 0.00 0.00 4.12
1567 1708 5.171476 ACTACATCTTCCGTTTCAGTGATG 58.829 41.667 0.00 0.00 37.77 3.07
1573 1714 4.878971 TCTTCCGTTTCAGTGATGTTTCAA 59.121 37.500 0.00 0.00 32.48 2.69
1576 1717 7.390440 TCTTCCGTTTCAGTGATGTTTCAATAT 59.610 33.333 0.00 0.00 32.48 1.28
1635 1776 0.622738 ACTGGCCAGACCCTGATCAT 60.623 55.000 39.19 9.77 37.83 2.45
1636 1777 0.549950 CTGGCCAGACCCTGATCATT 59.450 55.000 29.88 0.00 37.83 2.57
1643 1784 3.710677 CCAGACCCTGATCATTCTCTCTT 59.289 47.826 0.00 0.00 32.44 2.85
1645 1786 5.358922 CAGACCCTGATCATTCTCTCTTTC 58.641 45.833 0.00 0.00 32.44 2.62
1692 1833 3.739401 ACTAGGTTGGGGATTTTGGAG 57.261 47.619 0.00 0.00 0.00 3.86
1694 1835 3.858638 ACTAGGTTGGGGATTTTGGAGAT 59.141 43.478 0.00 0.00 0.00 2.75
1696 1837 3.444029 AGGTTGGGGATTTTGGAGATTG 58.556 45.455 0.00 0.00 0.00 2.67
1698 1839 3.195610 GGTTGGGGATTTTGGAGATTGAC 59.804 47.826 0.00 0.00 0.00 3.18
1725 1866 1.243902 TTGGGTCGAGTGATTTTGCC 58.756 50.000 0.00 0.00 0.00 4.52
1731 1872 1.086696 CGAGTGATTTTGCCGATGGT 58.913 50.000 0.00 0.00 0.00 3.55
1791 1932 4.736473 AGAGAAGGCTAACTCTAGATCCC 58.264 47.826 18.26 0.00 40.98 3.85
1890 2031 2.668625 TGCAACATCCATGGCATATGT 58.331 42.857 6.96 9.39 35.40 2.29
1905 2046 5.311913 TGGCATATGTGGTCCTAATGGAATA 59.688 40.000 4.29 0.00 45.18 1.75
2080 2221 3.114606 TGGGGCTCTGATCAGAAACATA 58.885 45.455 25.09 10.12 36.94 2.29
2083 2224 4.445448 GGGGCTCTGATCAGAAACATATGT 60.445 45.833 25.09 1.41 36.94 2.29
2110 2251 5.241506 TCAGTTTCTTTTCATGCTTGTAGGG 59.758 40.000 0.00 0.00 0.00 3.53
2122 2263 3.244665 TGCTTGTAGGGATATCTGCATGG 60.245 47.826 2.05 0.00 0.00 3.66
2124 2265 1.630369 TGTAGGGATATCTGCATGGGC 59.370 52.381 2.05 0.00 41.68 5.36
2152 2293 2.229792 CCTGCAAAGGCTTTCAGTACA 58.770 47.619 24.55 13.42 41.91 2.90
2162 2303 3.496160 GGCTTTCAGTACAAGGAAGGTGA 60.496 47.826 8.06 0.00 0.00 4.02
2163 2304 3.498777 GCTTTCAGTACAAGGAAGGTGAC 59.501 47.826 8.06 0.00 0.00 3.67
2168 2309 1.071228 GTACAAGGAAGGTGACGGGTT 59.929 52.381 0.00 0.00 0.00 4.11
2176 2317 3.322828 GGAAGGTGACGGGTTATGCTATA 59.677 47.826 0.00 0.00 0.00 1.31
2187 2328 4.626172 GGGTTATGCTATACGAAAGCTAGC 59.374 45.833 6.62 6.62 42.63 3.42
2200 2341 3.728385 AAGCTAGCCTTTTCAGTGGAT 57.272 42.857 12.13 0.00 0.00 3.41
2213 2354 1.846439 CAGTGGATGGACCTACCCAAT 59.154 52.381 0.00 0.00 40.04 3.16
2221 2362 4.411256 TGGACCTACCCAATAAACGATC 57.589 45.455 0.00 0.00 38.00 3.69
2250 2391 5.933617 ACAATATATCTCAAGCTTCCTGCA 58.066 37.500 0.00 0.00 45.94 4.41
2286 2427 2.763448 AGATACAGCTTTTCCTCGCTCT 59.237 45.455 0.00 0.00 33.45 4.09
2289 2430 1.074752 CAGCTTTTCCTCGCTCTGAC 58.925 55.000 0.00 0.00 33.45 3.51
2299 2440 2.061773 CTCGCTCTGACGTGTTTGATT 58.938 47.619 0.00 0.00 0.00 2.57
2322 2463 1.271054 GCACCACCTCATCTTGACTGT 60.271 52.381 0.00 0.00 0.00 3.55
2324 2465 3.854666 CACCACCTCATCTTGACTGTAG 58.145 50.000 0.00 0.00 0.00 2.74
2333 2474 4.467438 TCATCTTGACTGTAGCCAGATGAA 59.533 41.667 13.87 3.90 41.50 2.57
2367 2511 7.962918 CCAATTCTACAAGTGCATAACAGTAAC 59.037 37.037 0.00 0.00 0.00 2.50
2578 2722 1.238439 ACTTGTGAAGGCGACAATGG 58.762 50.000 0.00 0.00 32.96 3.16
2586 2730 3.191162 TGAAGGCGACAATGGATTTCAAG 59.809 43.478 0.00 0.00 0.00 3.02
2610 2754 0.692756 AGCTAGGAAGGGGAAGCTCC 60.693 60.000 0.00 0.00 41.35 4.70
2663 2807 0.990374 AGGCCAGTTGCTCTGAAGAT 59.010 50.000 5.01 0.00 46.27 2.40
2706 2850 3.316308 GCAAAGAAGAGTTCCAAGCTGAA 59.684 43.478 0.00 0.00 0.00 3.02
2793 2937 2.027460 CACCGGCTGTTGGTTTGC 59.973 61.111 0.00 0.00 37.72 3.68
2979 3129 8.794335 AGAATATACTCTTGGACCAAAACTTC 57.206 34.615 8.59 5.13 0.00 3.01
3003 3153 2.354805 GCCTAAGATCACCGACTTTGGT 60.355 50.000 0.00 0.00 45.21 3.67
3264 3414 5.669447 AGATAAACTGGAAGGAGGTGATGAT 59.331 40.000 0.00 0.00 39.30 2.45
3591 3774 9.722184 AAAAGTACTCCCTTTAGTGATCTAAAC 57.278 33.333 0.00 0.00 40.05 2.01
3592 3775 7.098074 AGTACTCCCTTTAGTGATCTAAACG 57.902 40.000 0.00 0.00 40.05 3.60
3593 3776 4.756502 ACTCCCTTTAGTGATCTAAACGC 58.243 43.478 0.00 0.00 40.05 4.84
3594 3777 4.466726 ACTCCCTTTAGTGATCTAAACGCT 59.533 41.667 0.00 0.00 40.05 5.07
3595 3778 5.007385 TCCCTTTAGTGATCTAAACGCTC 57.993 43.478 0.00 0.00 40.05 5.03
3596 3779 4.710375 TCCCTTTAGTGATCTAAACGCTCT 59.290 41.667 0.00 0.00 40.05 4.09
3597 3780 5.187186 TCCCTTTAGTGATCTAAACGCTCTT 59.813 40.000 0.00 0.00 40.05 2.85
3598 3781 6.379133 TCCCTTTAGTGATCTAAACGCTCTTA 59.621 38.462 0.00 0.00 40.05 2.10
3599 3782 7.069578 TCCCTTTAGTGATCTAAACGCTCTTAT 59.930 37.037 0.00 0.00 40.05 1.73
3600 3783 8.358148 CCCTTTAGTGATCTAAACGCTCTTATA 58.642 37.037 0.00 0.00 40.05 0.98
3601 3784 9.745880 CCTTTAGTGATCTAAACGCTCTTATAA 57.254 33.333 0.00 0.00 40.05 0.98
3606 3789 9.654663 AGTGATCTAAACGCTCTTATAAAAGTT 57.345 29.630 0.00 0.00 34.13 2.66
3614 3797 7.829378 ACGCTCTTATAAAAGTTTACAGAGG 57.171 36.000 16.49 11.85 35.69 3.69
3615 3798 6.817140 ACGCTCTTATAAAAGTTTACAGAGGG 59.183 38.462 22.31 22.31 43.34 4.30
3616 3799 7.039882 CGCTCTTATAAAAGTTTACAGAGGGA 58.960 38.462 20.93 3.69 42.11 4.20
3617 3800 7.222999 CGCTCTTATAAAAGTTTACAGAGGGAG 59.777 40.741 20.93 10.43 42.11 4.30
3618 3801 8.041919 GCTCTTATAAAAGTTTACAGAGGGAGT 58.958 37.037 16.49 0.00 35.69 3.85
3650 3833 6.604171 TGATTCTAATGCATAAGTGTGGGAT 58.396 36.000 0.00 0.00 0.00 3.85
3666 3849 7.048512 AGTGTGGGATAGATTTAGTAAGCAAC 58.951 38.462 0.00 0.00 0.00 4.17
3667 3850 6.821665 GTGTGGGATAGATTTAGTAAGCAACA 59.178 38.462 0.00 0.00 0.00 3.33
3691 3874 0.320160 GCGAAAGACGGGGTAGTTGT 60.320 55.000 0.00 0.00 42.83 3.32
3697 3880 1.206371 AGACGGGGTAGTTGTACATGC 59.794 52.381 0.00 0.00 0.00 4.06
3706 3889 1.094785 GTTGTACATGCGAGGCCATT 58.905 50.000 5.01 0.00 0.00 3.16
3707 3890 1.093972 TTGTACATGCGAGGCCATTG 58.906 50.000 5.01 0.00 0.00 2.82
3708 3891 1.356624 GTACATGCGAGGCCATTGC 59.643 57.895 5.01 6.17 38.98 3.56
3734 3926 7.117812 CCGTTAGTGTGTTGTATCTTGATTTCT 59.882 37.037 0.00 0.00 0.00 2.52
3746 3938 7.928706 TGTATCTTGATTTCTAGCCTTAAGAGC 59.071 37.037 3.36 5.95 0.00 4.09
3960 4158 8.773404 TCTCTAAAGTTTATGCAAAGTACTCC 57.227 34.615 0.00 0.00 0.00 3.85
3961 4159 7.822822 TCTCTAAAGTTTATGCAAAGTACTCCC 59.177 37.037 0.00 0.00 0.00 4.30
3962 4160 7.686434 TCTAAAGTTTATGCAAAGTACTCCCT 58.314 34.615 0.00 0.00 0.00 4.20
3963 4161 6.819397 AAAGTTTATGCAAAGTACTCCCTC 57.181 37.500 0.00 0.00 0.00 4.30
3964 4162 4.844884 AGTTTATGCAAAGTACTCCCTCC 58.155 43.478 0.00 0.00 0.00 4.30
3965 4163 3.536956 TTATGCAAAGTACTCCCTCCG 57.463 47.619 0.00 0.00 0.00 4.63
3966 4164 1.276622 ATGCAAAGTACTCCCTCCGT 58.723 50.000 0.00 0.00 0.00 4.69
3967 4165 1.053424 TGCAAAGTACTCCCTCCGTT 58.947 50.000 0.00 0.00 0.00 4.44
3968 4166 1.418637 TGCAAAGTACTCCCTCCGTTT 59.581 47.619 0.00 0.00 0.00 3.60
3969 4167 2.074576 GCAAAGTACTCCCTCCGTTTC 58.925 52.381 0.00 0.00 0.00 2.78
3970 4168 2.549349 GCAAAGTACTCCCTCCGTTTCA 60.549 50.000 0.00 0.00 0.00 2.69
3971 4169 3.735591 CAAAGTACTCCCTCCGTTTCAA 58.264 45.455 0.00 0.00 0.00 2.69
3972 4170 4.131596 CAAAGTACTCCCTCCGTTTCAAA 58.868 43.478 0.00 0.00 0.00 2.69
3973 4171 4.426736 AAGTACTCCCTCCGTTTCAAAA 57.573 40.909 0.00 0.00 0.00 2.44
3974 4172 4.635699 AGTACTCCCTCCGTTTCAAAAT 57.364 40.909 0.00 0.00 0.00 1.82
3975 4173 5.750352 AGTACTCCCTCCGTTTCAAAATA 57.250 39.130 0.00 0.00 0.00 1.40
3976 4174 5.731591 AGTACTCCCTCCGTTTCAAAATAG 58.268 41.667 0.00 0.00 0.00 1.73
3977 4175 4.903045 ACTCCCTCCGTTTCAAAATAGA 57.097 40.909 0.00 0.00 0.00 1.98
3978 4176 5.437191 ACTCCCTCCGTTTCAAAATAGAT 57.563 39.130 0.00 0.00 0.00 1.98
3979 4177 5.186198 ACTCCCTCCGTTTCAAAATAGATG 58.814 41.667 0.00 0.00 0.00 2.90
3980 4178 5.045869 ACTCCCTCCGTTTCAAAATAGATGA 60.046 40.000 0.00 0.00 0.00 2.92
3981 4179 6.001449 TCCCTCCGTTTCAAAATAGATGAT 57.999 37.500 0.00 0.00 0.00 2.45
3982 4180 6.055588 TCCCTCCGTTTCAAAATAGATGATC 58.944 40.000 0.00 0.00 0.00 2.92
3983 4181 5.239525 CCCTCCGTTTCAAAATAGATGATCC 59.760 44.000 0.00 0.00 0.00 3.36
3984 4182 5.822519 CCTCCGTTTCAAAATAGATGATCCA 59.177 40.000 0.00 0.00 0.00 3.41
3985 4183 6.318648 CCTCCGTTTCAAAATAGATGATCCAA 59.681 38.462 0.00 0.00 0.00 3.53
3986 4184 7.013655 CCTCCGTTTCAAAATAGATGATCCAAT 59.986 37.037 0.00 0.00 0.00 3.16
3987 4185 8.292444 TCCGTTTCAAAATAGATGATCCAATT 57.708 30.769 0.00 0.00 0.00 2.32
3988 4186 8.748412 TCCGTTTCAAAATAGATGATCCAATTT 58.252 29.630 0.00 0.00 0.00 1.82
3989 4187 9.369904 CCGTTTCAAAATAGATGATCCAATTTT 57.630 29.630 9.17 9.17 33.07 1.82
3998 4196 6.530019 AGATGATCCAATTTTGTACAACCC 57.470 37.500 8.07 0.00 0.00 4.11
3999 4197 4.775058 TGATCCAATTTTGTACAACCCG 57.225 40.909 8.07 0.00 0.00 5.28
4000 4198 4.145807 TGATCCAATTTTGTACAACCCGT 58.854 39.130 8.07 0.00 0.00 5.28
4001 4199 4.585162 TGATCCAATTTTGTACAACCCGTT 59.415 37.500 8.07 0.00 0.00 4.44
4002 4200 4.571372 TCCAATTTTGTACAACCCGTTC 57.429 40.909 8.07 0.00 0.00 3.95
4003 4201 4.208746 TCCAATTTTGTACAACCCGTTCT 58.791 39.130 8.07 0.00 0.00 3.01
4004 4202 5.374921 TCCAATTTTGTACAACCCGTTCTA 58.625 37.500 8.07 0.00 0.00 2.10
4005 4203 5.826737 TCCAATTTTGTACAACCCGTTCTAA 59.173 36.000 8.07 0.00 0.00 2.10
4006 4204 6.320672 TCCAATTTTGTACAACCCGTTCTAAA 59.679 34.615 8.07 0.00 0.00 1.85
4007 4205 6.979238 CCAATTTTGTACAACCCGTTCTAAAA 59.021 34.615 8.07 0.00 0.00 1.52
4008 4206 7.654116 CCAATTTTGTACAACCCGTTCTAAAAT 59.346 33.333 8.07 0.00 0.00 1.82
4009 4207 9.680315 CAATTTTGTACAACCCGTTCTAAAATA 57.320 29.630 8.07 0.00 0.00 1.40
4010 4208 9.902196 AATTTTGTACAACCCGTTCTAAAATAG 57.098 29.630 8.07 0.00 0.00 1.73
4011 4209 8.674263 TTTTGTACAACCCGTTCTAAAATAGA 57.326 30.769 8.07 0.00 0.00 1.98
4012 4210 8.851541 TTTGTACAACCCGTTCTAAAATAGAT 57.148 30.769 8.07 0.00 34.22 1.98
4013 4211 7.837202 TGTACAACCCGTTCTAAAATAGATG 57.163 36.000 0.00 0.00 34.22 2.90
4014 4212 7.613585 TGTACAACCCGTTCTAAAATAGATGA 58.386 34.615 0.00 0.00 34.22 2.92
4015 4213 6.980051 ACAACCCGTTCTAAAATAGATGAC 57.020 37.500 0.00 0.00 34.22 3.06
4016 4214 5.878669 ACAACCCGTTCTAAAATAGATGACC 59.121 40.000 0.00 0.00 34.22 4.02
4017 4215 5.032327 ACCCGTTCTAAAATAGATGACCC 57.968 43.478 0.00 0.00 34.22 4.46
4018 4216 4.472108 ACCCGTTCTAAAATAGATGACCCA 59.528 41.667 0.00 0.00 34.22 4.51
4019 4217 5.045432 ACCCGTTCTAAAATAGATGACCCAA 60.045 40.000 0.00 0.00 34.22 4.12
4020 4218 5.296035 CCCGTTCTAAAATAGATGACCCAAC 59.704 44.000 0.00 0.00 34.22 3.77
4021 4219 6.113411 CCGTTCTAAAATAGATGACCCAACT 58.887 40.000 0.00 0.00 34.22 3.16
4022 4220 6.598064 CCGTTCTAAAATAGATGACCCAACTT 59.402 38.462 0.00 0.00 34.22 2.66
4023 4221 7.120726 CCGTTCTAAAATAGATGACCCAACTTT 59.879 37.037 0.00 0.00 34.22 2.66
4024 4222 7.962918 CGTTCTAAAATAGATGACCCAACTTTG 59.037 37.037 0.00 0.00 34.22 2.77
4025 4223 8.793592 GTTCTAAAATAGATGACCCAACTTTGT 58.206 33.333 0.00 0.00 34.22 2.83
4027 4225 9.444600 TCTAAAATAGATGACCCAACTTTGTAC 57.555 33.333 0.00 0.00 0.00 2.90
4028 4226 9.226606 CTAAAATAGATGACCCAACTTTGTACA 57.773 33.333 0.00 0.00 0.00 2.90
4029 4227 8.472007 AAAATAGATGACCCAACTTTGTACAA 57.528 30.769 3.59 3.59 0.00 2.41
4030 4228 7.687941 AATAGATGACCCAACTTTGTACAAG 57.312 36.000 8.56 6.02 0.00 3.16
4031 4229 5.048846 AGATGACCCAACTTTGTACAAGT 57.951 39.130 8.56 6.63 0.00 3.16
4032 4230 5.445964 AGATGACCCAACTTTGTACAAGTT 58.554 37.500 8.56 11.95 40.80 2.66
4040 4238 5.767816 AACTTTGTACAAGTTGGGTCATC 57.232 39.130 17.21 0.00 38.88 2.92
4041 4239 5.048846 ACTTTGTACAAGTTGGGTCATCT 57.951 39.130 8.56 0.00 0.00 2.90
4042 4240 6.182507 ACTTTGTACAAGTTGGGTCATCTA 57.817 37.500 8.56 0.00 0.00 1.98
4043 4241 6.779860 ACTTTGTACAAGTTGGGTCATCTAT 58.220 36.000 8.56 0.00 0.00 1.98
4044 4242 7.231467 ACTTTGTACAAGTTGGGTCATCTATT 58.769 34.615 8.56 0.00 0.00 1.73
4045 4243 7.174946 ACTTTGTACAAGTTGGGTCATCTATTG 59.825 37.037 8.56 0.00 0.00 1.90
4046 4244 6.367374 TGTACAAGTTGGGTCATCTATTGA 57.633 37.500 7.96 0.00 0.00 2.57
4047 4245 6.774673 TGTACAAGTTGGGTCATCTATTGAA 58.225 36.000 7.96 0.00 35.70 2.69
4048 4246 6.653320 TGTACAAGTTGGGTCATCTATTGAAC 59.347 38.462 7.96 0.00 41.69 3.18
4064 4262 7.439381 TCTATTGAACCGTAAATAGATGACCC 58.561 38.462 10.49 0.00 39.38 4.46
4065 4263 5.423704 TTGAACCGTAAATAGATGACCCA 57.576 39.130 0.00 0.00 0.00 4.51
4066 4264 5.423704 TGAACCGTAAATAGATGACCCAA 57.576 39.130 0.00 0.00 0.00 4.12
4067 4265 5.180271 TGAACCGTAAATAGATGACCCAAC 58.820 41.667 0.00 0.00 0.00 3.77
4068 4266 5.046159 TGAACCGTAAATAGATGACCCAACT 60.046 40.000 0.00 0.00 0.00 3.16
4069 4267 5.431179 ACCGTAAATAGATGACCCAACTT 57.569 39.130 0.00 0.00 0.00 2.66
4070 4268 5.812286 ACCGTAAATAGATGACCCAACTTT 58.188 37.500 0.00 0.00 0.00 2.66
4071 4269 5.646360 ACCGTAAATAGATGACCCAACTTTG 59.354 40.000 0.00 0.00 0.00 2.77
4072 4270 5.646360 CCGTAAATAGATGACCCAACTTTGT 59.354 40.000 0.00 0.00 0.00 2.83
4073 4271 6.819649 CCGTAAATAGATGACCCAACTTTGTA 59.180 38.462 0.00 0.00 0.00 2.41
4074 4272 7.201582 CCGTAAATAGATGACCCAACTTTGTAC 60.202 40.741 0.00 0.00 0.00 2.90
4075 4273 7.332430 CGTAAATAGATGACCCAACTTTGTACA 59.668 37.037 0.00 0.00 0.00 2.90
4076 4274 9.005777 GTAAATAGATGACCCAACTTTGTACAA 57.994 33.333 3.59 3.59 0.00 2.41
4077 4275 7.448748 AATAGATGACCCAACTTTGTACAAC 57.551 36.000 8.07 0.00 0.00 3.32
4078 4276 4.142038 AGATGACCCAACTTTGTACAACC 58.858 43.478 8.07 0.00 0.00 3.77
4079 4277 2.657143 TGACCCAACTTTGTACAACCC 58.343 47.619 8.07 0.00 0.00 4.11
4080 4278 1.605232 GACCCAACTTTGTACAACCCG 59.395 52.381 8.07 2.57 0.00 5.28
4081 4279 1.064537 ACCCAACTTTGTACAACCCGT 60.065 47.619 8.07 3.23 0.00 5.28
4082 4280 2.025898 CCCAACTTTGTACAACCCGTT 58.974 47.619 8.07 9.24 0.00 4.44
4083 4281 2.427812 CCCAACTTTGTACAACCCGTTT 59.572 45.455 8.07 0.00 0.00 3.60
4084 4282 3.489568 CCCAACTTTGTACAACCCGTTTC 60.490 47.826 8.07 0.00 0.00 2.78
4085 4283 3.128938 CCAACTTTGTACAACCCGTTTCA 59.871 43.478 8.07 0.00 0.00 2.69
4086 4284 4.380655 CCAACTTTGTACAACCCGTTTCAA 60.381 41.667 8.07 0.00 0.00 2.69
4087 4285 5.162075 CAACTTTGTACAACCCGTTTCAAA 58.838 37.500 8.07 0.00 32.91 2.69
4088 4286 5.388408 ACTTTGTACAACCCGTTTCAAAA 57.612 34.783 8.07 0.00 33.25 2.44
4089 4287 5.968254 ACTTTGTACAACCCGTTTCAAAAT 58.032 33.333 8.07 0.00 33.25 1.82
4090 4288 7.098074 ACTTTGTACAACCCGTTTCAAAATA 57.902 32.000 8.07 0.00 33.25 1.40
4091 4289 7.197703 ACTTTGTACAACCCGTTTCAAAATAG 58.802 34.615 8.07 0.25 33.25 1.73
4092 4290 6.939132 TTGTACAACCCGTTTCAAAATAGA 57.061 33.333 3.59 0.00 0.00 1.98
4093 4291 7.513371 TTGTACAACCCGTTTCAAAATAGAT 57.487 32.000 3.59 0.00 0.00 1.98
4094 4292 6.904498 TGTACAACCCGTTTCAAAATAGATG 58.096 36.000 0.00 0.00 0.00 2.90
4095 4293 6.711194 TGTACAACCCGTTTCAAAATAGATGA 59.289 34.615 0.00 0.00 0.00 2.92
4096 4294 6.009115 ACAACCCGTTTCAAAATAGATGAC 57.991 37.500 0.00 0.00 0.00 3.06
4097 4295 5.048294 ACAACCCGTTTCAAAATAGATGACC 60.048 40.000 0.00 0.00 0.00 4.02
4098 4296 4.014406 ACCCGTTTCAAAATAGATGACCC 58.986 43.478 0.00 0.00 0.00 4.46
4099 4297 4.013728 CCCGTTTCAAAATAGATGACCCA 58.986 43.478 0.00 0.00 0.00 4.51
4100 4298 4.461081 CCCGTTTCAAAATAGATGACCCAA 59.539 41.667 0.00 0.00 0.00 4.12
4101 4299 5.399013 CCGTTTCAAAATAGATGACCCAAC 58.601 41.667 0.00 0.00 0.00 3.77
4102 4300 5.183140 CCGTTTCAAAATAGATGACCCAACT 59.817 40.000 0.00 0.00 0.00 3.16
4103 4301 6.294508 CCGTTTCAAAATAGATGACCCAACTT 60.295 38.462 0.00 0.00 0.00 2.66
4104 4302 7.145323 CGTTTCAAAATAGATGACCCAACTTT 58.855 34.615 0.00 0.00 0.00 2.66
4105 4303 8.293867 CGTTTCAAAATAGATGACCCAACTTTA 58.706 33.333 0.00 0.00 0.00 1.85
4116 4314 9.449719 AGATGACCCAACTTTATACTAACTTTG 57.550 33.333 0.00 0.00 0.00 2.77
4117 4315 9.227777 GATGACCCAACTTTATACTAACTTTGT 57.772 33.333 0.00 0.00 0.00 2.83
4138 4336 9.981114 CTTTGTATAAAGTTGGGTCATCTTTTT 57.019 29.630 3.91 5.11 38.75 1.94
4212 4410 8.078596 GCTACATTTCTCTCATGTTTTCAAACT 58.921 33.333 4.14 0.00 39.59 2.66
4244 4442 1.060729 TCCAAAACGAGACATGGGGA 58.939 50.000 0.00 0.00 33.66 4.81
4248 4446 2.403252 AAACGAGACATGGGGATGAC 57.597 50.000 0.00 0.00 0.00 3.06
4251 4449 0.528466 CGAGACATGGGGATGACGTG 60.528 60.000 0.00 0.00 0.00 4.49
4307 4505 1.294659 GCGGTCAAAGTCAGCTCCAG 61.295 60.000 0.00 0.00 0.00 3.86
4392 4592 1.026718 CGACCCTGCACATTTCCCTC 61.027 60.000 0.00 0.00 0.00 4.30
4417 4617 4.436998 CCGGGGACACAGAGCGAC 62.437 72.222 0.00 0.00 0.00 5.19
4418 4618 4.778415 CGGGGACACAGAGCGACG 62.778 72.222 0.00 0.00 0.00 5.12
4419 4619 4.436998 GGGGACACAGAGCGACGG 62.437 72.222 0.00 0.00 0.00 4.79
4420 4620 4.436998 GGGACACAGAGCGACGGG 62.437 72.222 0.00 0.00 0.00 5.28
4431 4631 2.887568 CGACGGGCTGATGCAGTC 60.888 66.667 0.00 0.00 41.52 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 12 9.638300 GCAACAGAATACGTTAAGAAATATCAG 57.362 33.333 0.00 0.00 0.00 2.90
12 13 9.157104 TGCAACAGAATACGTTAAGAAATATCA 57.843 29.630 0.00 0.00 0.00 2.15
13 14 9.982291 TTGCAACAGAATACGTTAAGAAATATC 57.018 29.630 0.00 0.00 0.00 1.63
15 16 9.767684 CATTGCAACAGAATACGTTAAGAAATA 57.232 29.630 0.00 0.00 0.00 1.40
16 17 8.296713 ACATTGCAACAGAATACGTTAAGAAAT 58.703 29.630 0.00 0.00 0.00 2.17
17 18 7.644490 ACATTGCAACAGAATACGTTAAGAAA 58.356 30.769 0.00 0.00 0.00 2.52
18 19 7.197071 ACATTGCAACAGAATACGTTAAGAA 57.803 32.000 0.00 0.00 0.00 2.52
19 20 6.795098 ACATTGCAACAGAATACGTTAAGA 57.205 33.333 0.00 0.00 0.00 2.10
20 21 9.554724 AAATACATTGCAACAGAATACGTTAAG 57.445 29.630 0.00 0.00 0.00 1.85
21 22 9.335891 CAAATACATTGCAACAGAATACGTTAA 57.664 29.630 0.00 0.00 31.00 2.01
22 23 7.965655 CCAAATACATTGCAACAGAATACGTTA 59.034 33.333 0.00 0.00 37.73 3.18
23 24 6.806249 CCAAATACATTGCAACAGAATACGTT 59.194 34.615 0.00 0.00 37.73 3.99
24 25 6.150307 TCCAAATACATTGCAACAGAATACGT 59.850 34.615 0.00 0.00 37.73 3.57
25 26 6.550843 TCCAAATACATTGCAACAGAATACG 58.449 36.000 0.00 0.00 37.73 3.06
26 27 8.755696 TTTCCAAATACATTGCAACAGAATAC 57.244 30.769 0.00 0.00 37.73 1.89
27 28 9.770097 TTTTTCCAAATACATTGCAACAGAATA 57.230 25.926 0.00 0.00 37.73 1.75
28 29 8.674263 TTTTTCCAAATACATTGCAACAGAAT 57.326 26.923 0.00 0.00 37.73 2.40
29 30 8.557864 CATTTTTCCAAATACATTGCAACAGAA 58.442 29.630 0.00 0.00 37.73 3.02
30 31 7.714377 ACATTTTTCCAAATACATTGCAACAGA 59.286 29.630 0.00 0.00 37.73 3.41
31 32 7.863666 ACATTTTTCCAAATACATTGCAACAG 58.136 30.769 0.00 0.00 37.73 3.16
32 33 7.798596 ACATTTTTCCAAATACATTGCAACA 57.201 28.000 0.00 0.00 37.73 3.33
70 71 8.773645 CGGAATAAAAATCATGTCAGCTATACA 58.226 33.333 3.74 3.74 0.00 2.29
71 72 8.988934 TCGGAATAAAAATCATGTCAGCTATAC 58.011 33.333 0.00 0.00 0.00 1.47
72 73 9.208022 CTCGGAATAAAAATCATGTCAGCTATA 57.792 33.333 0.00 0.00 0.00 1.31
73 74 7.716998 ACTCGGAATAAAAATCATGTCAGCTAT 59.283 33.333 0.00 0.00 0.00 2.97
74 75 7.047891 ACTCGGAATAAAAATCATGTCAGCTA 58.952 34.615 0.00 0.00 0.00 3.32
75 76 5.882557 ACTCGGAATAAAAATCATGTCAGCT 59.117 36.000 0.00 0.00 0.00 4.24
91 93 4.891992 TCCAGAAGAAAAGACTCGGAAT 57.108 40.909 0.00 0.00 0.00 3.01
129 131 4.505808 GGGAGATGCAGTCATATCAGATG 58.494 47.826 0.00 0.00 41.45 2.90
181 183 1.548719 GCACACCCTTTTTGGTATCCC 59.451 52.381 0.00 0.00 36.67 3.85
212 214 3.749088 ACGTATTCTCGCCATTTTTGTGA 59.251 39.130 0.00 0.00 0.00 3.58
294 296 6.947464 TGAAAACTCCCCATTTTTGTGTTTA 58.053 32.000 0.00 0.00 29.44 2.01
322 324 4.660303 TCCGGGTACAGAGTTACTAGGATA 59.340 45.833 0.00 0.00 0.00 2.59
351 353 1.736126 CTGCAGTGTTAGGCATGTCAG 59.264 52.381 5.25 0.00 39.65 3.51
352 354 1.072173 ACTGCAGTGTTAGGCATGTCA 59.928 47.619 20.97 0.00 39.65 3.58
369 371 6.198747 GGCAGAGCCTAGTAAATGGTTACTG 61.199 48.000 8.96 0.00 45.44 2.74
387 389 0.745845 CCATTCAAGGTCCGGCAGAG 60.746 60.000 0.00 0.00 0.00 3.35
437 439 5.941788 TCTAGTCTGATCAGCATGGTACTA 58.058 41.667 18.36 16.44 36.16 1.82
438 440 4.797743 TCTAGTCTGATCAGCATGGTACT 58.202 43.478 18.36 16.20 36.16 2.73
439 441 5.521906 TTCTAGTCTGATCAGCATGGTAC 57.478 43.478 18.36 9.67 36.16 3.34
490 549 1.003464 TGCCTCTACTTTGCAGCATGA 59.997 47.619 0.00 0.00 39.69 3.07
493 552 1.979855 TTTGCCTCTACTTTGCAGCA 58.020 45.000 0.00 0.00 36.21 4.41
495 554 3.427233 GCTCATTTGCCTCTACTTTGCAG 60.427 47.826 0.00 0.00 36.21 4.41
496 555 2.489329 GCTCATTTGCCTCTACTTTGCA 59.511 45.455 0.00 0.00 0.00 4.08
497 556 2.489329 TGCTCATTTGCCTCTACTTTGC 59.511 45.455 0.00 0.00 0.00 3.68
531 597 8.593492 ATGGAGAAAGTTGAAAAATACTTTGC 57.407 30.769 5.08 0.00 42.82 3.68
566 632 3.382546 GTGGAATAATGCAAGCCACATCT 59.617 43.478 16.79 0.00 46.27 2.90
578 644 5.775686 TCGGACCTAATACGTGGAATAATG 58.224 41.667 0.00 0.00 35.45 1.90
596 662 7.917720 TGTTAACTTGCTTTTATTTTCGGAC 57.082 32.000 7.22 0.00 0.00 4.79
598 664 8.514136 TGATGTTAACTTGCTTTTATTTTCGG 57.486 30.769 7.22 0.00 0.00 4.30
599 665 8.155923 GCTGATGTTAACTTGCTTTTATTTTCG 58.844 33.333 7.22 0.00 0.00 3.46
601 667 8.981647 CAGCTGATGTTAACTTGCTTTTATTTT 58.018 29.630 8.42 0.00 0.00 1.82
605 688 6.875948 TCAGCTGATGTTAACTTGCTTTTA 57.124 33.333 13.74 0.00 0.00 1.52
624 707 5.466058 CACTCATAGGAATTGACTGATCAGC 59.534 44.000 22.83 15.26 35.83 4.26
625 708 6.580788 ACACTCATAGGAATTGACTGATCAG 58.419 40.000 21.37 21.37 35.83 2.90
626 709 6.550938 ACACTCATAGGAATTGACTGATCA 57.449 37.500 0.00 0.00 0.00 2.92
627 710 7.655328 CCTAACACTCATAGGAATTGACTGATC 59.345 40.741 0.00 0.00 42.16 2.92
628 711 7.126421 ACCTAACACTCATAGGAATTGACTGAT 59.874 37.037 6.60 0.00 42.16 2.90
629 712 6.440647 ACCTAACACTCATAGGAATTGACTGA 59.559 38.462 6.60 0.00 42.16 3.41
630 713 6.644347 ACCTAACACTCATAGGAATTGACTG 58.356 40.000 6.60 0.00 42.16 3.51
631 714 6.127026 GGACCTAACACTCATAGGAATTGACT 60.127 42.308 6.60 0.00 42.16 3.41
642 773 6.884832 TGATATTTTCGGACCTAACACTCAT 58.115 36.000 0.00 0.00 0.00 2.90
652 783 5.235616 TGCTTCGTATTGATATTTTCGGACC 59.764 40.000 0.00 0.00 0.00 4.46
655 786 6.043327 TGTGCTTCGTATTGATATTTTCGG 57.957 37.500 0.00 0.00 0.00 4.30
657 788 7.322222 GCTGATGTGCTTCGTATTGATATTTTC 59.678 37.037 0.00 0.00 0.00 2.29
695 827 1.192428 GTGGGGTCTCCGTTGTCTAT 58.808 55.000 0.00 0.00 38.76 1.98
696 828 0.901580 GGTGGGGTCTCCGTTGTCTA 60.902 60.000 0.00 0.00 38.76 2.59
697 829 2.214920 GGTGGGGTCTCCGTTGTCT 61.215 63.158 0.00 0.00 38.76 3.41
700 832 1.302511 CAAGGTGGGGTCTCCGTTG 60.303 63.158 0.00 0.00 38.76 4.10
703 835 0.392998 CATTCAAGGTGGGGTCTCCG 60.393 60.000 0.00 0.00 38.76 4.63
716 848 6.313519 ACCAGGCTTATAACTCTCATTCAA 57.686 37.500 0.00 0.00 0.00 2.69
720 852 7.147479 ACAATGTACCAGGCTTATAACTCTCAT 60.147 37.037 0.00 0.00 0.00 2.90
763 895 5.127845 GTCCTCAAGGAGAATGACACATCTA 59.872 44.000 0.00 0.00 46.49 1.98
796 928 1.264288 CTTTTGACGGTCACCAAGCTC 59.736 52.381 10.97 0.00 0.00 4.09
804 936 2.589798 AGTTCGACTTTTGACGGTCA 57.410 45.000 6.76 6.76 38.09 4.02
806 938 2.896168 TCAAGTTCGACTTTTGACGGT 58.104 42.857 0.00 0.00 36.03 4.83
810 942 5.815222 TCAGTTGATCAAGTTCGACTTTTGA 59.185 36.000 13.25 7.60 38.12 2.69
829 961 8.758829 TCCAACTTACACATACTCATATCAGTT 58.241 33.333 0.00 0.00 0.00 3.16
835 967 9.416284 TGAGTATCCAACTTACACATACTCATA 57.584 33.333 13.55 0.00 45.61 2.15
836 968 8.306313 TGAGTATCCAACTTACACATACTCAT 57.694 34.615 13.55 0.00 45.61 2.90
842 974 8.928448 ACTGATATGAGTATCCAACTTACACAT 58.072 33.333 0.00 0.00 39.07 3.21
843 975 8.197439 CACTGATATGAGTATCCAACTTACACA 58.803 37.037 0.00 0.00 39.07 3.72
844 976 7.169982 GCACTGATATGAGTATCCAACTTACAC 59.830 40.741 0.00 0.00 39.07 2.90
845 977 7.147742 TGCACTGATATGAGTATCCAACTTACA 60.148 37.037 0.00 0.00 39.07 2.41
846 978 7.210174 TGCACTGATATGAGTATCCAACTTAC 58.790 38.462 0.00 0.00 39.07 2.34
847 979 7.360113 TGCACTGATATGAGTATCCAACTTA 57.640 36.000 0.00 0.00 39.07 2.24
848 980 6.239217 TGCACTGATATGAGTATCCAACTT 57.761 37.500 0.00 0.00 39.07 2.66
849 981 5.876651 TGCACTGATATGAGTATCCAACT 57.123 39.130 0.00 0.00 42.80 3.16
850 982 8.607441 TTAATGCACTGATATGAGTATCCAAC 57.393 34.615 0.00 0.00 36.65 3.77
851 983 9.625747 TTTTAATGCACTGATATGAGTATCCAA 57.374 29.630 0.00 0.00 36.65 3.53
852 984 9.625747 TTTTTAATGCACTGATATGAGTATCCA 57.374 29.630 0.00 0.00 36.65 3.41
854 986 9.604626 GCTTTTTAATGCACTGATATGAGTATC 57.395 33.333 0.00 0.00 37.75 2.24
855 987 9.347240 AGCTTTTTAATGCACTGATATGAGTAT 57.653 29.630 0.00 0.00 0.00 2.12
856 988 8.737168 AGCTTTTTAATGCACTGATATGAGTA 57.263 30.769 0.00 0.00 0.00 2.59
857 989 7.636150 AGCTTTTTAATGCACTGATATGAGT 57.364 32.000 0.00 0.00 0.00 3.41
858 990 8.922058 AAAGCTTTTTAATGCACTGATATGAG 57.078 30.769 5.69 0.00 0.00 2.90
859 991 9.142515 CAAAAGCTTTTTAATGCACTGATATGA 57.857 29.630 21.70 0.00 0.00 2.15
860 992 9.142515 TCAAAAGCTTTTTAATGCACTGATATG 57.857 29.630 21.70 5.92 0.00 1.78
861 993 9.143631 GTCAAAAGCTTTTTAATGCACTGATAT 57.856 29.630 21.70 0.00 0.00 1.63
862 994 8.140628 TGTCAAAAGCTTTTTAATGCACTGATA 58.859 29.630 21.70 9.05 0.00 2.15
863 995 6.985645 TGTCAAAAGCTTTTTAATGCACTGAT 59.014 30.769 21.70 0.00 0.00 2.90
864 996 6.336566 TGTCAAAAGCTTTTTAATGCACTGA 58.663 32.000 21.70 10.63 0.00 3.41
865 997 6.586868 TGTCAAAAGCTTTTTAATGCACTG 57.413 33.333 21.70 8.41 0.00 3.66
866 998 6.203338 CCATGTCAAAAGCTTTTTAATGCACT 59.797 34.615 21.70 0.00 0.00 4.40
867 999 6.018016 ACCATGTCAAAAGCTTTTTAATGCAC 60.018 34.615 21.70 11.47 0.00 4.57
874 1006 7.439056 CACTATCAACCATGTCAAAAGCTTTTT 59.561 33.333 21.70 4.83 0.00 1.94
882 1014 5.238432 GTGTCACACTATCAACCATGTCAAA 59.762 40.000 0.00 0.00 0.00 2.69
886 1018 4.040339 TCAGTGTCACACTATCAACCATGT 59.960 41.667 10.98 0.00 43.43 3.21
888 1020 4.890158 TCAGTGTCACACTATCAACCAT 57.110 40.909 10.98 0.00 43.43 3.55
889 1021 4.631131 CTTCAGTGTCACACTATCAACCA 58.369 43.478 10.98 0.00 43.43 3.67
890 1022 3.433615 GCTTCAGTGTCACACTATCAACC 59.566 47.826 10.98 0.00 43.43 3.77
891 1023 4.058124 TGCTTCAGTGTCACACTATCAAC 58.942 43.478 10.98 0.15 43.43 3.18
892 1024 4.058124 GTGCTTCAGTGTCACACTATCAA 58.942 43.478 10.98 3.13 43.43 2.57
893 1025 3.554960 GGTGCTTCAGTGTCACACTATCA 60.555 47.826 10.98 3.42 43.43 2.15
894 1026 2.996621 GGTGCTTCAGTGTCACACTATC 59.003 50.000 10.98 0.67 43.43 2.08
897 1029 0.179045 GGGTGCTTCAGTGTCACACT 60.179 55.000 3.98 3.98 46.51 3.55
899 1031 0.179048 CAGGGTGCTTCAGTGTCACA 60.179 55.000 5.62 0.00 32.69 3.58
923 1055 2.635915 ACCGTTCATTTCTAGGTGGACA 59.364 45.455 0.00 0.00 33.37 4.02
924 1056 3.259902 GACCGTTCATTTCTAGGTGGAC 58.740 50.000 0.00 0.00 35.00 4.02
938 1070 7.800155 ACTACTACTTATAAGAGGACCGTTC 57.200 40.000 19.38 0.00 0.00 3.95
939 1071 8.490311 AGTACTACTACTTATAAGAGGACCGTT 58.510 37.037 19.38 0.00 27.62 4.44
941 1073 8.772705 CAAGTACTACTACTTATAAGAGGACCG 58.227 40.741 19.38 3.80 40.64 4.79
945 1077 8.351461 GGCACAAGTACTACTACTTATAAGAGG 58.649 40.741 19.38 12.43 40.64 3.69
946 1078 8.068977 CGGCACAAGTACTACTACTTATAAGAG 58.931 40.741 19.38 13.36 40.64 2.85
947 1079 7.467811 GCGGCACAAGTACTACTACTTATAAGA 60.468 40.741 19.38 2.38 40.64 2.10
949 1081 6.460123 GGCGGCACAAGTACTACTACTTATAA 60.460 42.308 3.07 0.00 40.64 0.98
950 1082 5.009010 GGCGGCACAAGTACTACTACTTATA 59.991 44.000 3.07 0.00 40.64 0.98
951 1083 4.202090 GGCGGCACAAGTACTACTACTTAT 60.202 45.833 3.07 0.00 40.64 1.73
952 1084 3.129287 GGCGGCACAAGTACTACTACTTA 59.871 47.826 3.07 0.00 40.64 2.24
953 1085 2.094338 GGCGGCACAAGTACTACTACTT 60.094 50.000 3.07 0.00 42.95 2.24
954 1086 1.475682 GGCGGCACAAGTACTACTACT 59.524 52.381 3.07 0.00 34.38 2.57
955 1087 1.796617 CGGCGGCACAAGTACTACTAC 60.797 57.143 10.53 0.00 0.00 2.73
956 1088 0.452987 CGGCGGCACAAGTACTACTA 59.547 55.000 10.53 0.00 0.00 1.82
975 1107 1.736681 GCAGAGATGGTTTGAGCTCAC 59.263 52.381 18.03 5.76 30.38 3.51
982 1114 2.094390 CCATGGTTGCAGAGATGGTTTG 60.094 50.000 2.57 0.00 32.20 2.93
1009 1141 1.881602 CAAGCAGAAGGGCAAGAGC 59.118 57.895 0.00 0.00 41.10 4.09
1015 1147 3.376918 GGTGGCAAGCAGAAGGGC 61.377 66.667 0.00 0.00 0.00 5.19
1017 1149 0.825010 AAGTGGTGGCAAGCAGAAGG 60.825 55.000 0.00 0.00 33.61 3.46
1039 1171 3.638160 AGCAGAGAGGATAAGCAGAAGAG 59.362 47.826 0.00 0.00 0.00 2.85
1041 1173 4.405116 AAGCAGAGAGGATAAGCAGAAG 57.595 45.455 0.00 0.00 0.00 2.85
1042 1174 4.833478 AAAGCAGAGAGGATAAGCAGAA 57.167 40.909 0.00 0.00 0.00 3.02
1043 1175 4.833478 AAAAGCAGAGAGGATAAGCAGA 57.167 40.909 0.00 0.00 0.00 4.26
1044 1176 5.669477 ACTAAAAGCAGAGAGGATAAGCAG 58.331 41.667 0.00 0.00 0.00 4.24
1045 1177 5.683876 ACTAAAAGCAGAGAGGATAAGCA 57.316 39.130 0.00 0.00 0.00 3.91
1046 1178 5.986741 GGTACTAAAAGCAGAGAGGATAAGC 59.013 44.000 0.00 0.00 0.00 3.09
1047 1179 7.113658 TGGTACTAAAAGCAGAGAGGATAAG 57.886 40.000 0.00 0.00 0.00 1.73
1048 1180 7.399191 TCTTGGTACTAAAAGCAGAGAGGATAA 59.601 37.037 0.00 0.00 0.00 1.75
1049 1181 6.895756 TCTTGGTACTAAAAGCAGAGAGGATA 59.104 38.462 0.00 0.00 0.00 2.59
1050 1182 5.721960 TCTTGGTACTAAAAGCAGAGAGGAT 59.278 40.000 0.00 0.00 0.00 3.24
1051 1183 5.084519 TCTTGGTACTAAAAGCAGAGAGGA 58.915 41.667 0.00 0.00 0.00 3.71
1052 1184 5.407407 TCTTGGTACTAAAAGCAGAGAGG 57.593 43.478 0.00 0.00 0.00 3.69
1053 1185 4.867608 GCTCTTGGTACTAAAAGCAGAGAG 59.132 45.833 11.99 5.16 36.41 3.20
1054 1186 4.528596 AGCTCTTGGTACTAAAAGCAGAGA 59.471 41.667 18.17 0.00 32.25 3.10
1082 1214 8.117813 TCGTAATGGTAGAATATCATGTGCTA 57.882 34.615 0.00 0.00 42.77 3.49
1083 1215 6.993079 TCGTAATGGTAGAATATCATGTGCT 58.007 36.000 0.00 0.00 42.77 4.40
1084 1216 7.010552 GGATCGTAATGGTAGAATATCATGTGC 59.989 40.741 0.00 0.00 42.77 4.57
1092 1224 9.228949 GTTAGAGAGGATCGTAATGGTAGAATA 57.771 37.037 0.00 0.00 42.67 1.75
1094 1226 6.489361 GGTTAGAGAGGATCGTAATGGTAGAA 59.511 42.308 0.00 0.00 42.67 2.10
1098 1230 3.568853 CGGTTAGAGAGGATCGTAATGGT 59.431 47.826 0.00 0.00 42.67 3.55
1101 1233 3.497640 CGACGGTTAGAGAGGATCGTAAT 59.502 47.826 0.00 0.00 42.67 1.89
1104 1236 1.134580 TCGACGGTTAGAGAGGATCGT 60.135 52.381 0.00 0.00 42.67 3.73
1105 1237 1.579698 TCGACGGTTAGAGAGGATCG 58.420 55.000 0.00 0.00 42.67 3.69
1117 1249 0.883370 GTTTGGAAGGCTTCGACGGT 60.883 55.000 20.26 0.00 0.00 4.83
1143 1275 2.267006 CCATCTGGCGACTGCAGT 59.733 61.111 21.88 21.88 45.35 4.40
1155 1287 1.606531 GCAGGAGAAGGTGCCATCT 59.393 57.895 0.00 0.00 33.29 2.90
1184 1316 1.346395 TGAAGGCGTTGGTGTAGATGT 59.654 47.619 0.00 0.00 0.00 3.06
1328 1460 1.265095 CAAGCGCGCCATCATAATCTT 59.735 47.619 30.33 8.45 0.00 2.40
1407 1548 7.859377 CCATCGGTATTCTTCAAGATGAAATTG 59.141 37.037 4.99 0.00 35.73 2.32
1441 1582 2.472488 GCGAATCAAAACTTTGCCACAG 59.528 45.455 0.00 0.00 38.05 3.66
1461 1602 1.518903 GCAGGAAAGTGTCTGTGGGC 61.519 60.000 0.00 0.00 33.81 5.36
1474 1615 1.792757 ATGGGCTGAGTTGGCAGGAA 61.793 55.000 0.00 0.00 36.41 3.36
1485 1626 1.066430 GTAGAAACGGTGATGGGCTGA 60.066 52.381 0.00 0.00 0.00 4.26
1490 1631 5.699458 ACTAACTTTGTAGAAACGGTGATGG 59.301 40.000 0.00 0.00 0.00 3.51
1499 1640 7.280652 GGGTTGTACACACTAACTTTGTAGAAA 59.719 37.037 0.00 0.00 32.60 2.52
1516 1657 1.202710 AGCACGTGATTGGGTTGTACA 60.203 47.619 22.23 0.00 0.00 2.90
1517 1658 1.463444 GAGCACGTGATTGGGTTGTAC 59.537 52.381 22.23 0.00 0.00 2.90
1527 1668 1.267121 AGTTACCAGGAGCACGTGAT 58.733 50.000 22.23 14.87 34.32 3.06
1593 1734 9.360093 CAGTATATATCCGAAACTTGAGGAATC 57.640 37.037 0.00 0.00 37.62 2.52
1600 1741 5.547465 TGGCCAGTATATATCCGAAACTTG 58.453 41.667 0.00 0.00 0.00 3.16
1677 1818 3.119495 CGTCAATCTCCAAAATCCCCAAC 60.119 47.826 0.00 0.00 0.00 3.77
1692 1833 1.810755 GACCCAAAACTCCCGTCAATC 59.189 52.381 0.00 0.00 0.00 2.67
1694 1835 0.533308 CGACCCAAAACTCCCGTCAA 60.533 55.000 0.00 0.00 0.00 3.18
1696 1837 0.669625 CTCGACCCAAAACTCCCGTC 60.670 60.000 0.00 0.00 0.00 4.79
1698 1839 0.949105 CACTCGACCCAAAACTCCCG 60.949 60.000 0.00 0.00 0.00 5.14
1725 1866 0.806102 CCACAAGTAGCCGACCATCG 60.806 60.000 0.00 0.00 40.07 3.84
1791 1932 2.596904 ACAACCGGAGATTACCATCG 57.403 50.000 9.46 0.00 34.17 3.84
1890 2031 6.844388 AGTAGTGACATATTCCATTAGGACCA 59.156 38.462 0.00 0.00 45.73 4.02
1905 2046 6.014647 TGTAGGTTTAGGTGAGTAGTGACAT 58.985 40.000 0.00 0.00 0.00 3.06
2047 2188 2.629617 CAGAGCCCCAAAAATCTGTGTT 59.370 45.455 0.00 0.00 35.52 3.32
2080 2221 6.645790 AGCATGAAAAGAAACTGAGAACAT 57.354 33.333 0.00 0.00 0.00 2.71
2083 2224 6.455360 ACAAGCATGAAAAGAAACTGAGAA 57.545 33.333 0.00 0.00 0.00 2.87
2094 2235 5.532406 GCAGATATCCCTACAAGCATGAAAA 59.468 40.000 0.00 0.00 0.00 2.29
2098 2239 4.011966 TGCAGATATCCCTACAAGCATG 57.988 45.455 0.00 0.00 0.00 4.06
2110 2251 1.436600 CAGTCGCCCATGCAGATATC 58.563 55.000 0.00 0.00 37.32 1.63
2152 2293 1.339727 GCATAACCCGTCACCTTCCTT 60.340 52.381 0.00 0.00 0.00 3.36
2162 2303 3.069158 AGCTTTCGTATAGCATAACCCGT 59.931 43.478 8.41 0.00 41.11 5.28
2163 2304 3.650139 AGCTTTCGTATAGCATAACCCG 58.350 45.455 8.41 0.00 41.11 5.28
2168 2309 5.723672 AAGGCTAGCTTTCGTATAGCATA 57.276 39.130 15.72 0.00 42.97 3.14
2176 2317 2.808543 CACTGAAAAGGCTAGCTTTCGT 59.191 45.455 13.02 14.23 34.84 3.85
2187 2328 2.887151 AGGTCCATCCACTGAAAAGG 57.113 50.000 0.00 0.00 39.02 3.11
2200 2341 3.135167 GGATCGTTTATTGGGTAGGTCCA 59.865 47.826 0.00 0.00 38.11 4.02
2213 2354 6.384224 AGATATATTGTTCGCGGATCGTTTA 58.616 36.000 6.13 0.00 39.67 2.01
2221 2362 3.990469 AGCTTGAGATATATTGTTCGCGG 59.010 43.478 6.13 0.00 0.00 6.46
2250 2391 4.702131 GCTGTATCTGAAACATTCACCCTT 59.298 41.667 0.00 0.00 35.46 3.95
2286 2427 1.601903 GGTGCAGAATCAAACACGTCA 59.398 47.619 0.00 0.00 33.81 4.35
2289 2430 1.334960 GGTGGTGCAGAATCAAACACG 60.335 52.381 0.00 0.00 33.81 4.49
2299 2440 1.002430 GTCAAGATGAGGTGGTGCAGA 59.998 52.381 0.00 0.00 0.00 4.26
2322 2463 3.111484 TGGTGGTATGTTCATCTGGCTA 58.889 45.455 0.00 0.00 0.00 3.93
2324 2465 2.418368 TGGTGGTATGTTCATCTGGC 57.582 50.000 0.00 0.00 0.00 4.85
2333 2474 4.700213 GCACTTGTAGAATTGGTGGTATGT 59.300 41.667 0.00 0.00 0.00 2.29
2367 2511 1.679139 TTGGTTCTTCTGCACCAGTG 58.321 50.000 0.00 0.00 44.06 3.66
2373 2517 4.410099 AGATCCATTTTGGTTCTTCTGCA 58.590 39.130 2.01 0.00 42.34 4.41
2375 2519 7.609532 AGAAGTAGATCCATTTTGGTTCTTCTG 59.390 37.037 11.33 0.00 42.34 3.02
2376 2520 7.694093 AGAAGTAGATCCATTTTGGTTCTTCT 58.306 34.615 11.33 9.30 42.34 2.85
2550 2694 5.038033 GTCGCCTTCACAAGTTCTCTATAG 58.962 45.833 0.00 0.00 0.00 1.31
2553 2697 2.626266 TGTCGCCTTCACAAGTTCTCTA 59.374 45.455 0.00 0.00 0.00 2.43
2578 2722 4.637977 CCTTCCTAGCTCAACCTTGAAATC 59.362 45.833 0.00 0.00 36.64 2.17
2586 2730 1.210722 CTTCCCCTTCCTAGCTCAACC 59.789 57.143 0.00 0.00 0.00 3.77
2610 2754 1.595929 ACCTTTGTACACCACGCCG 60.596 57.895 0.00 0.00 0.00 6.46
2706 2850 6.543831 GGTAAATCCTAGCAATCACACTCAAT 59.456 38.462 0.00 0.00 0.00 2.57
2979 3129 1.025812 AGTCGGTGATCTTAGGCTCG 58.974 55.000 0.00 0.00 0.00 5.03
3003 3153 4.276431 CCTCGGTTTAGTAACTTTGCCAAA 59.724 41.667 0.00 0.00 34.59 3.28
3231 3381 4.439700 CCTTCCAGTTTATCTGCAAGCATG 60.440 45.833 0.00 0.00 39.79 4.06
3256 3406 6.704289 TTCATCAATCCAAGAATCATCACC 57.296 37.500 0.00 0.00 0.00 4.02
3264 3414 6.914654 TCCACAAATTCATCAATCCAAGAA 57.085 33.333 0.00 0.00 0.00 2.52
3483 3666 9.730705 CATATACATCCTTGACCTTACAATCAT 57.269 33.333 0.00 0.00 0.00 2.45
3485 3668 8.993121 CACATATACATCCTTGACCTTACAATC 58.007 37.037 0.00 0.00 0.00 2.67
3507 3690 4.768583 AGTTTTTCCACATTGTTGCACAT 58.231 34.783 0.00 0.00 0.00 3.21
3568 3751 6.405619 GCGTTTAGATCACTAAAGGGAGTACT 60.406 42.308 17.67 0.00 45.42 2.73
3572 3755 5.012328 AGCGTTTAGATCACTAAAGGGAG 57.988 43.478 17.67 7.05 45.42 4.30
3574 3757 5.012328 AGAGCGTTTAGATCACTAAAGGG 57.988 43.478 17.67 9.06 45.42 3.95
3575 3758 9.745880 TTATAAGAGCGTTTAGATCACTAAAGG 57.254 33.333 14.11 14.11 45.42 3.11
3580 3763 9.654663 AACTTTTATAAGAGCGTTTAGATCACT 57.345 29.630 3.00 0.00 37.82 3.41
3588 3771 8.718734 CCTCTGTAAACTTTTATAAGAGCGTTT 58.281 33.333 13.76 6.02 36.27 3.60
3589 3772 7.333672 CCCTCTGTAAACTTTTATAAGAGCGTT 59.666 37.037 13.76 1.38 36.27 4.84
3590 3773 6.817140 CCCTCTGTAAACTTTTATAAGAGCGT 59.183 38.462 13.76 0.00 36.27 5.07
3591 3774 7.039882 TCCCTCTGTAAACTTTTATAAGAGCG 58.960 38.462 13.76 9.07 36.27 5.03
3592 3775 8.041919 ACTCCCTCTGTAAACTTTTATAAGAGC 58.958 37.037 13.76 0.00 36.27 4.09
3601 3784 9.892130 CAATCTATTACTCCCTCTGTAAACTTT 57.108 33.333 0.00 0.00 34.20 2.66
3602 3785 9.268282 TCAATCTATTACTCCCTCTGTAAACTT 57.732 33.333 0.00 0.00 34.20 2.66
3603 3786 8.840200 TCAATCTATTACTCCCTCTGTAAACT 57.160 34.615 0.00 0.00 34.20 2.66
3606 3789 9.661954 AGAATCAATCTATTACTCCCTCTGTAA 57.338 33.333 0.00 0.00 36.32 2.41
3608 3791 9.661954 TTAGAATCAATCTATTACTCCCTCTGT 57.338 33.333 0.00 0.00 40.32 3.41
3611 3794 9.377312 GCATTAGAATCAATCTATTACTCCCTC 57.623 37.037 0.00 0.00 40.32 4.30
3612 3795 8.884323 TGCATTAGAATCAATCTATTACTCCCT 58.116 33.333 0.00 0.00 40.32 4.20
3613 3796 9.678260 ATGCATTAGAATCAATCTATTACTCCC 57.322 33.333 0.00 0.00 40.32 4.30
3621 3804 9.276590 CCACACTTATGCATTAGAATCAATCTA 57.723 33.333 19.06 0.00 39.71 1.98
3622 3805 7.230108 CCCACACTTATGCATTAGAATCAATCT 59.770 37.037 19.06 0.00 42.48 2.40
3623 3806 7.229306 TCCCACACTTATGCATTAGAATCAATC 59.771 37.037 19.06 0.00 0.00 2.67
3624 3807 7.062322 TCCCACACTTATGCATTAGAATCAAT 58.938 34.615 19.06 0.00 0.00 2.57
3625 3808 6.422333 TCCCACACTTATGCATTAGAATCAA 58.578 36.000 19.06 0.00 0.00 2.57
3626 3809 6.000246 TCCCACACTTATGCATTAGAATCA 58.000 37.500 19.06 0.00 0.00 2.57
3630 3813 6.994421 TCTATCCCACACTTATGCATTAGA 57.006 37.500 19.06 6.53 0.00 2.10
3636 3819 9.209175 CTTACTAAATCTATCCCACACTTATGC 57.791 37.037 0.00 0.00 0.00 3.14
3650 3833 8.936070 TCGCTTTATGTTGCTTACTAAATCTA 57.064 30.769 0.00 0.00 0.00 1.98
3666 3849 1.734163 ACCCCGTCTTTCGCTTTATG 58.266 50.000 0.00 0.00 38.35 1.90
3667 3850 2.498885 ACTACCCCGTCTTTCGCTTTAT 59.501 45.455 0.00 0.00 38.35 1.40
3673 3856 2.030007 TGTACAACTACCCCGTCTTTCG 60.030 50.000 0.00 0.00 39.52 3.46
3691 3874 3.826221 GCAATGGCCTCGCATGTA 58.174 55.556 3.32 0.00 0.00 2.29
3706 3889 3.671008 AGATACAACACACTAACGGCA 57.329 42.857 0.00 0.00 0.00 5.69
3707 3890 3.991773 TCAAGATACAACACACTAACGGC 59.008 43.478 0.00 0.00 0.00 5.68
3708 3891 6.721571 AATCAAGATACAACACACTAACGG 57.278 37.500 0.00 0.00 0.00 4.44
3709 3892 8.018677 AGAAATCAAGATACAACACACTAACG 57.981 34.615 0.00 0.00 0.00 3.18
3712 3895 7.764443 GGCTAGAAATCAAGATACAACACACTA 59.236 37.037 0.00 0.00 0.00 2.74
3734 3926 5.497474 CCTAACCTTTTGCTCTTAAGGCTA 58.503 41.667 14.45 6.71 43.84 3.93
3746 3938 4.764823 TGTAACTCATGGCCTAACCTTTTG 59.235 41.667 3.32 0.00 40.22 2.44
3846 4044 8.257306 GCAAACCCTCCATAAGAAAATCAATTA 58.743 33.333 0.00 0.00 0.00 1.40
3889 4087 9.886132 ATTGAACCGTAAAGTCTACATTATCTT 57.114 29.630 0.00 0.00 0.00 2.40
3955 4153 6.155565 TCATCTATTTTGAAACGGAGGGAGTA 59.844 38.462 0.00 0.00 0.00 2.59
3956 4154 4.903045 TCTATTTTGAAACGGAGGGAGT 57.097 40.909 0.00 0.00 0.00 3.85
3957 4155 5.428253 TCATCTATTTTGAAACGGAGGGAG 58.572 41.667 0.00 0.00 0.00 4.30
3958 4156 5.429681 TCATCTATTTTGAAACGGAGGGA 57.570 39.130 0.00 0.00 0.00 4.20
3959 4157 5.239525 GGATCATCTATTTTGAAACGGAGGG 59.760 44.000 0.00 0.00 0.00 4.30
3960 4158 5.822519 TGGATCATCTATTTTGAAACGGAGG 59.177 40.000 0.00 0.00 0.00 4.30
3961 4159 6.925610 TGGATCATCTATTTTGAAACGGAG 57.074 37.500 0.00 0.00 0.00 4.63
3962 4160 7.880160 ATTGGATCATCTATTTTGAAACGGA 57.120 32.000 0.00 0.00 0.00 4.69
3963 4161 8.931385 AAATTGGATCATCTATTTTGAAACGG 57.069 30.769 0.00 0.00 0.00 4.44
3972 4170 8.695456 GGGTTGTACAAAATTGGATCATCTATT 58.305 33.333 10.51 0.00 0.00 1.73
3973 4171 7.013274 CGGGTTGTACAAAATTGGATCATCTAT 59.987 37.037 10.51 0.00 0.00 1.98
3974 4172 6.317642 CGGGTTGTACAAAATTGGATCATCTA 59.682 38.462 10.51 0.00 0.00 1.98
3975 4173 5.125417 CGGGTTGTACAAAATTGGATCATCT 59.875 40.000 10.51 0.00 0.00 2.90
3976 4174 5.105917 ACGGGTTGTACAAAATTGGATCATC 60.106 40.000 10.51 0.00 0.00 2.92
3977 4175 4.770010 ACGGGTTGTACAAAATTGGATCAT 59.230 37.500 10.51 0.00 0.00 2.45
3978 4176 4.145807 ACGGGTTGTACAAAATTGGATCA 58.854 39.130 10.51 0.00 0.00 2.92
3979 4177 4.776795 ACGGGTTGTACAAAATTGGATC 57.223 40.909 10.51 0.00 0.00 3.36
3980 4178 4.830600 AGAACGGGTTGTACAAAATTGGAT 59.169 37.500 10.51 0.00 0.00 3.41
3981 4179 4.208746 AGAACGGGTTGTACAAAATTGGA 58.791 39.130 10.51 0.00 0.00 3.53
3982 4180 4.577834 AGAACGGGTTGTACAAAATTGG 57.422 40.909 10.51 1.16 0.00 3.16
3983 4181 7.988904 TTTTAGAACGGGTTGTACAAAATTG 57.011 32.000 10.51 3.50 0.00 2.32
3984 4182 9.902196 CTATTTTAGAACGGGTTGTACAAAATT 57.098 29.630 10.51 2.35 32.32 1.82
3985 4183 9.287373 TCTATTTTAGAACGGGTTGTACAAAAT 57.713 29.630 10.51 5.10 33.51 1.82
3986 4184 8.674263 TCTATTTTAGAACGGGTTGTACAAAA 57.326 30.769 10.51 0.00 0.00 2.44
3987 4185 8.723311 CATCTATTTTAGAACGGGTTGTACAAA 58.277 33.333 10.51 0.00 38.50 2.83
3988 4186 8.095792 TCATCTATTTTAGAACGGGTTGTACAA 58.904 33.333 3.59 3.59 38.50 2.41
3989 4187 7.546667 GTCATCTATTTTAGAACGGGTTGTACA 59.453 37.037 0.00 0.00 38.50 2.90
3990 4188 7.010830 GGTCATCTATTTTAGAACGGGTTGTAC 59.989 40.741 0.00 0.00 38.50 2.90
3991 4189 7.043565 GGTCATCTATTTTAGAACGGGTTGTA 58.956 38.462 0.00 0.00 38.50 2.41
3992 4190 5.878669 GGTCATCTATTTTAGAACGGGTTGT 59.121 40.000 0.00 0.00 38.50 3.32
3993 4191 5.296035 GGGTCATCTATTTTAGAACGGGTTG 59.704 44.000 0.00 0.00 38.50 3.77
3994 4192 5.045432 TGGGTCATCTATTTTAGAACGGGTT 60.045 40.000 0.00 0.00 38.50 4.11
3995 4193 4.472108 TGGGTCATCTATTTTAGAACGGGT 59.528 41.667 0.00 0.00 38.50 5.28
3996 4194 5.031066 TGGGTCATCTATTTTAGAACGGG 57.969 43.478 0.00 0.00 38.50 5.28
3997 4195 6.113411 AGTTGGGTCATCTATTTTAGAACGG 58.887 40.000 0.00 0.00 38.50 4.44
3998 4196 7.611213 AAGTTGGGTCATCTATTTTAGAACG 57.389 36.000 0.00 0.00 38.50 3.95
3999 4197 8.793592 ACAAAGTTGGGTCATCTATTTTAGAAC 58.206 33.333 0.00 0.00 38.50 3.01
4000 4198 8.934023 ACAAAGTTGGGTCATCTATTTTAGAA 57.066 30.769 0.00 0.00 38.50 2.10
4001 4199 9.444600 GTACAAAGTTGGGTCATCTATTTTAGA 57.555 33.333 0.00 0.00 39.50 2.10
4002 4200 9.226606 TGTACAAAGTTGGGTCATCTATTTTAG 57.773 33.333 0.00 0.00 0.00 1.85
4003 4201 9.575868 TTGTACAAAGTTGGGTCATCTATTTTA 57.424 29.630 5.64 0.00 0.00 1.52
4004 4202 8.472007 TTGTACAAAGTTGGGTCATCTATTTT 57.528 30.769 5.64 0.00 0.00 1.82
4005 4203 7.724061 ACTTGTACAAAGTTGGGTCATCTATTT 59.276 33.333 10.03 0.00 0.00 1.40
4006 4204 7.231467 ACTTGTACAAAGTTGGGTCATCTATT 58.769 34.615 10.03 0.00 0.00 1.73
4007 4205 6.779860 ACTTGTACAAAGTTGGGTCATCTAT 58.220 36.000 10.03 0.00 0.00 1.98
4008 4206 6.182507 ACTTGTACAAAGTTGGGTCATCTA 57.817 37.500 10.03 0.00 0.00 1.98
4009 4207 5.048846 ACTTGTACAAAGTTGGGTCATCT 57.951 39.130 10.03 0.00 0.00 2.90
4010 4208 5.767816 AACTTGTACAAAGTTGGGTCATC 57.232 39.130 17.21 0.00 38.88 2.92
4018 4216 5.445964 AGATGACCCAACTTGTACAAAGTT 58.554 37.500 10.03 12.51 40.80 2.66
4019 4217 5.048846 AGATGACCCAACTTGTACAAAGT 57.951 39.130 10.03 7.25 0.00 2.66
4020 4218 7.390440 TCAATAGATGACCCAACTTGTACAAAG 59.610 37.037 10.03 6.63 31.50 2.77
4021 4219 7.227873 TCAATAGATGACCCAACTTGTACAAA 58.772 34.615 10.03 0.00 31.50 2.83
4022 4220 6.774673 TCAATAGATGACCCAACTTGTACAA 58.225 36.000 8.28 8.28 31.50 2.41
4023 4221 6.367374 TCAATAGATGACCCAACTTGTACA 57.633 37.500 0.00 0.00 31.50 2.90
4024 4222 6.093633 GGTTCAATAGATGACCCAACTTGTAC 59.906 42.308 0.00 0.00 40.26 2.90
4025 4223 6.177610 GGTTCAATAGATGACCCAACTTGTA 58.822 40.000 0.00 0.00 40.26 2.41
4026 4224 5.010282 GGTTCAATAGATGACCCAACTTGT 58.990 41.667 0.00 0.00 40.26 3.16
4027 4225 4.094887 CGGTTCAATAGATGACCCAACTTG 59.905 45.833 0.00 0.00 40.54 3.16
4028 4226 4.261801 CGGTTCAATAGATGACCCAACTT 58.738 43.478 0.00 0.00 40.54 2.66
4029 4227 3.263425 ACGGTTCAATAGATGACCCAACT 59.737 43.478 0.00 0.00 40.54 3.16
4030 4228 3.606687 ACGGTTCAATAGATGACCCAAC 58.393 45.455 0.00 0.00 40.54 3.77
4031 4229 3.992943 ACGGTTCAATAGATGACCCAA 57.007 42.857 0.00 0.00 40.54 4.12
4032 4230 5.423704 TTTACGGTTCAATAGATGACCCA 57.576 39.130 0.00 0.00 40.54 4.51
4033 4231 7.439381 TCTATTTACGGTTCAATAGATGACCC 58.561 38.462 14.11 0.00 37.17 4.46
4038 4236 8.095169 GGGTCATCTATTTACGGTTCAATAGAT 58.905 37.037 19.68 19.68 46.70 1.98
4039 4237 7.070198 TGGGTCATCTATTTACGGTTCAATAGA 59.930 37.037 17.82 17.82 43.13 1.98
4040 4238 7.214381 TGGGTCATCTATTTACGGTTCAATAG 58.786 38.462 11.08 11.08 35.20 1.73
4041 4239 7.127012 TGGGTCATCTATTTACGGTTCAATA 57.873 36.000 0.00 0.00 0.00 1.90
4042 4240 5.996644 TGGGTCATCTATTTACGGTTCAAT 58.003 37.500 0.00 0.00 0.00 2.57
4043 4241 5.423704 TGGGTCATCTATTTACGGTTCAA 57.576 39.130 0.00 0.00 0.00 2.69
4044 4242 5.046159 AGTTGGGTCATCTATTTACGGTTCA 60.046 40.000 0.00 0.00 0.00 3.18
4045 4243 5.425630 AGTTGGGTCATCTATTTACGGTTC 58.574 41.667 0.00 0.00 0.00 3.62
4046 4244 5.431179 AGTTGGGTCATCTATTTACGGTT 57.569 39.130 0.00 0.00 0.00 4.44
4047 4245 5.431179 AAGTTGGGTCATCTATTTACGGT 57.569 39.130 0.00 0.00 0.00 4.83
4048 4246 5.646360 ACAAAGTTGGGTCATCTATTTACGG 59.354 40.000 0.00 0.00 0.00 4.02
4049 4247 6.737254 ACAAAGTTGGGTCATCTATTTACG 57.263 37.500 0.00 0.00 0.00 3.18
4050 4248 8.556213 TGTACAAAGTTGGGTCATCTATTTAC 57.444 34.615 0.00 0.00 0.00 2.01
4051 4249 9.005777 GTTGTACAAAGTTGGGTCATCTATTTA 57.994 33.333 10.51 0.00 0.00 1.40
4052 4250 7.039993 GGTTGTACAAAGTTGGGTCATCTATTT 60.040 37.037 10.51 0.00 0.00 1.40
4053 4251 6.433093 GGTTGTACAAAGTTGGGTCATCTATT 59.567 38.462 10.51 0.00 0.00 1.73
4054 4252 5.944007 GGTTGTACAAAGTTGGGTCATCTAT 59.056 40.000 10.51 0.00 0.00 1.98
4055 4253 5.310451 GGTTGTACAAAGTTGGGTCATCTA 58.690 41.667 10.51 0.00 0.00 1.98
4056 4254 4.142038 GGTTGTACAAAGTTGGGTCATCT 58.858 43.478 10.51 0.00 0.00 2.90
4057 4255 3.254903 GGGTTGTACAAAGTTGGGTCATC 59.745 47.826 10.51 0.00 0.00 2.92
4058 4256 3.227614 GGGTTGTACAAAGTTGGGTCAT 58.772 45.455 10.51 0.00 0.00 3.06
4059 4257 2.657143 GGGTTGTACAAAGTTGGGTCA 58.343 47.619 10.51 0.00 0.00 4.02
4060 4258 1.605232 CGGGTTGTACAAAGTTGGGTC 59.395 52.381 10.51 0.00 0.00 4.46
4061 4259 1.064537 ACGGGTTGTACAAAGTTGGGT 60.065 47.619 10.51 0.37 0.00 4.51
4062 4260 1.682740 ACGGGTTGTACAAAGTTGGG 58.317 50.000 10.51 0.00 0.00 4.12
4063 4261 3.128938 TGAAACGGGTTGTACAAAGTTGG 59.871 43.478 19.40 8.31 0.00 3.77
4064 4262 4.358494 TGAAACGGGTTGTACAAAGTTG 57.642 40.909 19.40 10.11 0.00 3.16
4065 4263 5.388408 TTTGAAACGGGTTGTACAAAGTT 57.612 34.783 10.51 13.61 34.45 2.66
4066 4264 5.388408 TTTTGAAACGGGTTGTACAAAGT 57.612 34.783 10.51 8.24 37.84 2.66
4067 4265 7.419204 TCTATTTTGAAACGGGTTGTACAAAG 58.581 34.615 10.51 7.59 37.84 2.77
4068 4266 7.330900 TCTATTTTGAAACGGGTTGTACAAA 57.669 32.000 10.51 0.00 36.17 2.83
4069 4267 6.939132 TCTATTTTGAAACGGGTTGTACAA 57.061 33.333 3.59 3.59 0.00 2.41
4070 4268 6.711194 TCATCTATTTTGAAACGGGTTGTACA 59.289 34.615 0.00 0.00 0.00 2.90
4071 4269 7.019418 GTCATCTATTTTGAAACGGGTTGTAC 58.981 38.462 0.00 0.00 0.00 2.90
4072 4270 6.149807 GGTCATCTATTTTGAAACGGGTTGTA 59.850 38.462 0.00 0.00 0.00 2.41
4073 4271 5.048294 GGTCATCTATTTTGAAACGGGTTGT 60.048 40.000 0.00 0.00 0.00 3.32
4074 4272 5.399013 GGTCATCTATTTTGAAACGGGTTG 58.601 41.667 0.00 0.00 0.00 3.77
4075 4273 4.461431 GGGTCATCTATTTTGAAACGGGTT 59.539 41.667 0.00 0.00 0.00 4.11
4076 4274 4.014406 GGGTCATCTATTTTGAAACGGGT 58.986 43.478 0.00 0.00 0.00 5.28
4077 4275 4.013728 TGGGTCATCTATTTTGAAACGGG 58.986 43.478 0.00 0.00 0.00 5.28
4078 4276 5.183140 AGTTGGGTCATCTATTTTGAAACGG 59.817 40.000 0.00 0.00 0.00 4.44
4079 4277 6.254281 AGTTGGGTCATCTATTTTGAAACG 57.746 37.500 0.00 0.00 0.00 3.60
4090 4288 9.449719 CAAAGTTAGTATAAAGTTGGGTCATCT 57.550 33.333 0.00 0.00 0.00 2.90
4091 4289 9.227777 ACAAAGTTAGTATAAAGTTGGGTCATC 57.772 33.333 0.00 0.00 0.00 2.92
4112 4310 9.981114 AAAAAGATGACCCAACTTTATACAAAG 57.019 29.630 3.28 0.00 45.63 2.77
4139 4337 9.938280 CAAATATATATACTCCCTCCGTTTCAA 57.062 33.333 0.00 0.00 0.00 2.69
4140 4338 8.537016 CCAAATATATATACTCCCTCCGTTTCA 58.463 37.037 0.00 0.00 0.00 2.69
4141 4339 8.537858 ACCAAATATATATACTCCCTCCGTTTC 58.462 37.037 0.00 0.00 0.00 2.78
4142 4340 8.445361 ACCAAATATATATACTCCCTCCGTTT 57.555 34.615 0.00 0.00 0.00 3.60
4143 4341 7.125356 GGACCAAATATATATACTCCCTCCGTT 59.875 40.741 0.00 0.00 0.00 4.44
4144 4342 6.610425 GGACCAAATATATATACTCCCTCCGT 59.390 42.308 0.00 0.00 0.00 4.69
4145 4343 6.839657 AGGACCAAATATATATACTCCCTCCG 59.160 42.308 0.00 0.00 0.00 4.63
4146 4344 8.625467 AAGGACCAAATATATATACTCCCTCC 57.375 38.462 0.00 0.00 0.00 4.30
4147 4345 9.268282 TGAAGGACCAAATATATATACTCCCTC 57.732 37.037 0.00 0.00 0.00 4.30
4148 4346 9.629649 TTGAAGGACCAAATATATATACTCCCT 57.370 33.333 0.00 0.00 0.00 4.20
4196 4394 5.009911 CCATGTCCAGTTTGAAAACATGAGA 59.990 40.000 17.44 6.88 46.36 3.27
4233 4431 0.537188 ACACGTCATCCCCATGTCTC 59.463 55.000 0.00 0.00 0.00 3.36
4244 4442 0.887387 CAAAACCGGGGACACGTCAT 60.887 55.000 6.32 0.00 0.00 3.06
4248 4446 0.519961 GATTCAAAACCGGGGACACG 59.480 55.000 6.32 0.00 0.00 4.49
4251 4449 1.810755 GTGAGATTCAAAACCGGGGAC 59.189 52.381 6.32 0.00 0.00 4.46
4257 4455 4.590850 AGGCAAAGTGAGATTCAAAACC 57.409 40.909 0.00 0.00 0.00 3.27
4307 4505 3.786635 AGAAGAAGATATGACGTGGCAC 58.213 45.455 7.79 7.79 0.00 5.01
4372 4572 2.700773 GGGAAATGTGCAGGGTCGC 61.701 63.158 0.00 0.00 0.00 5.19
4400 4600 4.436998 GTCGCTCTGTGTCCCCGG 62.437 72.222 0.00 0.00 0.00 5.73
4414 4614 2.887568 GACTGCATCAGCCCGTCG 60.888 66.667 0.00 0.00 41.13 5.12
4415 4615 2.512515 GGACTGCATCAGCCCGTC 60.513 66.667 0.00 0.00 41.13 4.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.