Multiple sequence alignment - TraesCS5B01G532000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G532000 chr5B 100.000 7216 0 0 1 7216 689859174 689851959 0.000000e+00 13326.0
1 TraesCS5B01G532000 chr5B 91.837 147 8 4 3887 4032 394253467 394253610 1.230000e-47 202.0
2 TraesCS5B01G532000 chr5B 91.837 147 8 4 3887 4032 394256125 394256268 1.230000e-47 202.0
3 TraesCS5B01G532000 chr4A 91.967 3224 164 49 720 3912 622281578 622284737 0.000000e+00 4431.0
4 TraesCS5B01G532000 chr4A 95.805 2622 75 17 4033 6638 622284733 622287335 0.000000e+00 4200.0
5 TraesCS5B01G532000 chr4A 95.688 603 24 2 4 605 625470825 625470224 0.000000e+00 968.0
6 TraesCS5B01G532000 chr4A 94.702 604 29 3 1 603 598151067 598150466 0.000000e+00 935.0
7 TraesCS5B01G532000 chr4A 79.783 277 36 12 6682 6955 197480969 197481228 4.450000e-42 183.0
8 TraesCS5B01G532000 chr4A 88.462 78 7 2 7136 7212 622288486 622288562 7.710000e-15 93.5
9 TraesCS5B01G532000 chr5D 86.732 3271 283 91 720 3908 546657515 546654314 0.000000e+00 3496.0
10 TraesCS5B01G532000 chr5D 90.397 2572 129 61 4030 6566 546654314 546651826 0.000000e+00 3273.0
11 TraesCS5B01G532000 chr5A 95.875 606 23 2 1 605 429258533 429259137 0.000000e+00 979.0
12 TraesCS5B01G532000 chr5A 91.333 150 9 4 3887 4035 311019864 311019718 1.230000e-47 202.0
13 TraesCS5B01G532000 chr5A 80.565 283 23 20 6682 6955 20365165 20365424 9.560000e-44 189.0
14 TraesCS5B01G532000 chr5A 79.856 278 35 13 6682 6955 554380688 554380948 4.450000e-42 183.0
15 TraesCS5B01G532000 chr5A 79.496 278 36 13 6682 6955 554436085 554436345 2.070000e-40 178.0
16 TraesCS5B01G532000 chr3A 95.688 603 24 2 4 605 688423898 688424499 0.000000e+00 968.0
17 TraesCS5B01G532000 chr3A 95.175 601 27 2 4 603 62298972 62299571 0.000000e+00 948.0
18 TraesCS5B01G532000 chr7A 95.515 602 23 3 3 603 129298861 129299459 0.000000e+00 959.0
19 TraesCS5B01G532000 chr7A 92.667 150 7 4 3887 4035 439786535 439786389 5.670000e-51 213.0
20 TraesCS5B01G532000 chr7A 87.805 82 3 4 6682 6762 629872822 629872897 9.970000e-14 89.8
21 TraesCS5B01G532000 chr7A 100.000 34 0 0 6922 6955 72961972 72962005 6.040000e-06 63.9
22 TraesCS5B01G532000 chr2A 94.728 607 27 3 1 606 45114048 45113446 0.000000e+00 939.0
23 TraesCS5B01G532000 chr2A 85.321 763 96 12 1543 2299 484994729 484993977 0.000000e+00 774.0
24 TraesCS5B01G532000 chr6A 94.833 600 29 2 5 603 573106752 573106154 0.000000e+00 935.0
25 TraesCS5B01G532000 chr6A 78.729 409 51 23 6552 6953 578454679 578455058 2.600000e-59 241.0
26 TraesCS5B01G532000 chr6A 91.275 149 13 0 1001 1149 400119806 400119658 3.410000e-48 204.0
27 TraesCS5B01G532000 chr6A 79.422 277 36 13 6682 6955 132972540 132972282 7.440000e-40 176.0
28 TraesCS5B01G532000 chr6A 81.604 212 18 13 6557 6762 589803667 589803471 9.690000e-34 156.0
29 TraesCS5B01G532000 chr1A 94.554 606 30 3 1 605 498007609 498007006 0.000000e+00 933.0
30 TraesCS5B01G532000 chr1A 93.269 104 7 0 6897 7000 349105872 349105975 3.490000e-33 154.0
31 TraesCS5B01G532000 chr7B 83.597 695 79 20 1353 2031 684163167 684163842 2.860000e-173 619.0
32 TraesCS5B01G532000 chr7B 91.333 150 9 4 3887 4035 645515327 645515181 1.230000e-47 202.0
33 TraesCS5B01G532000 chr7B 89.583 96 8 1 2201 2296 684163917 684164010 3.540000e-23 121.0
34 TraesCS5B01G532000 chr1B 83.735 664 69 24 1353 1998 558598757 558598115 6.230000e-165 592.0
35 TraesCS5B01G532000 chr1B 82.464 211 17 12 6557 6762 238493324 238493519 4.480000e-37 167.0
36 TraesCS5B01G532000 chr3B 86.166 506 45 14 1402 1899 744740684 744740196 2.310000e-144 523.0
37 TraesCS5B01G532000 chr3B 79.481 385 38 19 1044 1406 744753439 744753074 1.210000e-57 235.0
38 TraesCS5B01G532000 chr2D 81.974 466 43 26 5133 5591 543106278 543106709 2.480000e-94 357.0
39 TraesCS5B01G532000 chr7D 95.556 135 6 0 3903 4037 606120490 606120356 4.380000e-52 217.0
40 TraesCS5B01G532000 chr6B 93.103 145 8 2 3892 4036 644370754 644370896 2.040000e-50 211.0
41 TraesCS5B01G532000 chr6B 90.062 161 14 2 990 1149 439397544 439397385 2.640000e-49 207.0
42 TraesCS5B01G532000 chr6D 94.203 138 6 2 3909 4046 126631879 126631744 7.340000e-50 209.0
43 TraesCS5B01G532000 chr6D 91.946 149 12 0 1001 1149 277668940 277668792 7.340000e-50 209.0
44 TraesCS5B01G532000 chr1D 92.466 146 8 2 3900 4043 336556816 336556672 9.490000e-49 206.0
45 TraesCS5B01G532000 chrUn 82.464 211 17 12 6557 6762 343937346 343937151 4.480000e-37 167.0
46 TraesCS5B01G532000 chrUn 82.297 209 21 12 6557 6762 462333885 462333690 4.480000e-37 167.0
47 TraesCS5B01G532000 chrUn 81.818 209 15 11 6557 6762 1353917 1354105 3.490000e-33 154.0
48 TraesCS5B01G532000 chrUn 81.818 209 15 11 6557 6762 316950126 316949938 3.490000e-33 154.0
49 TraesCS5B01G532000 chrUn 81.818 209 15 11 6557 6762 341805128 341804940 3.490000e-33 154.0
50 TraesCS5B01G532000 chr2B 82.464 211 18 12 6557 6762 735770019 735770215 4.480000e-37 167.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G532000 chr5B 689851959 689859174 7215 True 13326.000000 13326 100.0000 1 7216 1 chr5B.!!$R1 7215
1 TraesCS5B01G532000 chr5B 394253467 394256268 2801 False 202.000000 202 91.8370 3887 4032 2 chr5B.!!$F1 145
2 TraesCS5B01G532000 chr4A 622281578 622288562 6984 False 2908.166667 4431 92.0780 720 7212 3 chr4A.!!$F2 6492
3 TraesCS5B01G532000 chr4A 625470224 625470825 601 True 968.000000 968 95.6880 4 605 1 chr4A.!!$R2 601
4 TraesCS5B01G532000 chr4A 598150466 598151067 601 True 935.000000 935 94.7020 1 603 1 chr4A.!!$R1 602
5 TraesCS5B01G532000 chr5D 546651826 546657515 5689 True 3384.500000 3496 88.5645 720 6566 2 chr5D.!!$R1 5846
6 TraesCS5B01G532000 chr5A 429258533 429259137 604 False 979.000000 979 95.8750 1 605 1 chr5A.!!$F2 604
7 TraesCS5B01G532000 chr3A 688423898 688424499 601 False 968.000000 968 95.6880 4 605 1 chr3A.!!$F2 601
8 TraesCS5B01G532000 chr3A 62298972 62299571 599 False 948.000000 948 95.1750 4 603 1 chr3A.!!$F1 599
9 TraesCS5B01G532000 chr7A 129298861 129299459 598 False 959.000000 959 95.5150 3 603 1 chr7A.!!$F2 600
10 TraesCS5B01G532000 chr2A 45113446 45114048 602 True 939.000000 939 94.7280 1 606 1 chr2A.!!$R1 605
11 TraesCS5B01G532000 chr2A 484993977 484994729 752 True 774.000000 774 85.3210 1543 2299 1 chr2A.!!$R2 756
12 TraesCS5B01G532000 chr6A 573106154 573106752 598 True 935.000000 935 94.8330 5 603 1 chr6A.!!$R3 598
13 TraesCS5B01G532000 chr1A 498007006 498007609 603 True 933.000000 933 94.5540 1 605 1 chr1A.!!$R1 604
14 TraesCS5B01G532000 chr7B 684163167 684164010 843 False 370.000000 619 86.5900 1353 2296 2 chr7B.!!$F1 943
15 TraesCS5B01G532000 chr1B 558598115 558598757 642 True 592.000000 592 83.7350 1353 1998 1 chr1B.!!$R1 645

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
202 203 0.394488 TTGTCAAACACCTTGCGGGA 60.394 50.000 2.42 0.00 38.76 5.14 F
1151 1163 0.173708 CTCTTCCAGCTCACGGTACC 59.826 60.000 0.16 0.16 0.00 3.34 F
2009 2063 0.108615 CGGTAGTCCAGCAGGTTCAG 60.109 60.000 0.00 0.00 35.89 3.02 F
2236 2298 0.955178 TTACGGGCCAACACAACATG 59.045 50.000 4.39 0.00 0.00 3.21 F
2778 2856 4.141367 TGAGTAATTGGGACCAAGTTGTGA 60.141 41.667 9.47 0.00 39.47 3.58 F
4217 4582 0.806868 CCACAAGTGGCTGCATGTAG 59.193 55.000 6.42 6.42 44.73 2.74 F
5818 8102 0.730494 GCTTTGTTCTGTCATGGCGC 60.730 55.000 0.00 0.00 0.00 6.53 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1620 1672 0.036306 TCTCCGTCCCCTTTGCTTTC 59.964 55.000 0.00 0.00 0.00 2.62 R
2172 2234 0.596600 TCACCAGTGCTCGTTTCGTC 60.597 55.000 0.00 0.00 0.00 4.20 R
3171 3278 1.345415 TCCCTTGTTCACCTACCGAAC 59.655 52.381 0.00 0.00 42.52 3.95 R
3577 3684 1.556911 ACCTAGTGTGCTAGCAATGCT 59.443 47.619 21.29 18.77 42.51 3.79 R
4701 6938 5.580691 TGAAAGGCATTACTTGTCATAGACG 59.419 40.000 0.00 0.00 34.95 4.18 R
6046 8334 0.528684 GGTCATGCTCTCTACCACGC 60.529 60.000 0.00 0.00 32.04 5.34 R
6648 8943 0.117340 ACCAGAGCCTAACCACCTCT 59.883 55.000 0.00 0.00 36.43 3.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
202 203 0.394488 TTGTCAAACACCTTGCGGGA 60.394 50.000 2.42 0.00 38.76 5.14
286 287 2.530406 CTAGGAGGGGATGGGGCC 60.530 72.222 0.00 0.00 0.00 5.80
496 498 2.168503 CAACCCGTTATAGCGCGCA 61.169 57.895 35.10 19.76 0.00 6.09
498 500 2.583868 CCCGTTATAGCGCGCACA 60.584 61.111 35.10 21.34 0.00 4.57
617 619 2.187351 GCTCTAACAGCGAGTCTCTG 57.813 55.000 8.60 8.60 38.76 3.35
618 620 1.797348 GCTCTAACAGCGAGTCTCTGC 60.797 57.143 10.06 8.15 38.76 4.26
619 621 1.470494 CTCTAACAGCGAGTCTCTGCA 59.530 52.381 10.06 0.00 35.04 4.41
620 622 2.095461 TCTAACAGCGAGTCTCTGCAT 58.905 47.619 10.06 2.52 35.04 3.96
621 623 2.493675 TCTAACAGCGAGTCTCTGCATT 59.506 45.455 10.06 12.26 35.04 3.56
622 624 1.719600 AACAGCGAGTCTCTGCATTC 58.280 50.000 10.06 0.00 35.04 2.67
623 625 0.894141 ACAGCGAGTCTCTGCATTCT 59.106 50.000 10.06 0.00 35.04 2.40
624 626 1.274728 ACAGCGAGTCTCTGCATTCTT 59.725 47.619 10.06 0.00 35.04 2.52
625 627 1.925847 CAGCGAGTCTCTGCATTCTTC 59.074 52.381 15.71 0.00 0.00 2.87
626 628 1.824230 AGCGAGTCTCTGCATTCTTCT 59.176 47.619 15.71 0.00 0.00 2.85
627 629 2.233431 AGCGAGTCTCTGCATTCTTCTT 59.767 45.455 15.71 0.00 0.00 2.52
628 630 2.348059 GCGAGTCTCTGCATTCTTCTTG 59.652 50.000 10.53 0.00 0.00 3.02
629 631 2.348059 CGAGTCTCTGCATTCTTCTTGC 59.652 50.000 0.00 0.00 40.55 4.01
631 633 3.072944 AGTCTCTGCATTCTTCTTGCAC 58.927 45.455 0.00 0.00 44.73 4.57
632 634 2.810274 GTCTCTGCATTCTTCTTGCACA 59.190 45.455 0.00 0.00 44.73 4.57
633 635 2.810274 TCTCTGCATTCTTCTTGCACAC 59.190 45.455 0.00 0.00 44.73 3.82
634 636 1.532437 TCTGCATTCTTCTTGCACACG 59.468 47.619 0.00 0.00 44.73 4.49
635 637 1.265095 CTGCATTCTTCTTGCACACGT 59.735 47.619 0.00 0.00 44.73 4.49
636 638 2.480037 CTGCATTCTTCTTGCACACGTA 59.520 45.455 0.00 0.00 44.73 3.57
637 639 2.223144 TGCATTCTTCTTGCACACGTAC 59.777 45.455 0.00 0.00 44.73 3.67
638 640 2.223144 GCATTCTTCTTGCACACGTACA 59.777 45.455 0.00 0.00 39.90 2.90
639 641 3.665323 GCATTCTTCTTGCACACGTACAG 60.665 47.826 0.00 0.00 39.90 2.74
640 642 2.882927 TCTTCTTGCACACGTACAGT 57.117 45.000 0.00 0.00 0.00 3.55
641 643 3.994204 TCTTCTTGCACACGTACAGTA 57.006 42.857 0.00 0.00 0.00 2.74
642 644 3.635331 TCTTCTTGCACACGTACAGTAC 58.365 45.455 0.00 0.00 0.00 2.73
643 645 3.067040 TCTTCTTGCACACGTACAGTACA 59.933 43.478 11.37 0.00 0.00 2.90
644 646 3.007979 TCTTGCACACGTACAGTACAG 57.992 47.619 11.37 5.22 0.00 2.74
645 647 2.619646 TCTTGCACACGTACAGTACAGA 59.380 45.455 11.37 1.54 0.00 3.41
646 648 3.254903 TCTTGCACACGTACAGTACAGAT 59.745 43.478 11.37 0.00 0.00 2.90
647 649 4.456566 TCTTGCACACGTACAGTACAGATA 59.543 41.667 11.37 0.00 0.00 1.98
648 650 4.351131 TGCACACGTACAGTACAGATAG 57.649 45.455 11.37 0.00 0.00 2.08
649 651 3.106672 GCACACGTACAGTACAGATAGC 58.893 50.000 11.37 4.33 0.00 2.97
650 652 3.181499 GCACACGTACAGTACAGATAGCT 60.181 47.826 11.37 0.00 0.00 3.32
693 695 4.589216 TTTTGTGAGAAATTGGGAGCAG 57.411 40.909 0.00 0.00 0.00 4.24
694 696 3.507162 TTGTGAGAAATTGGGAGCAGA 57.493 42.857 0.00 0.00 0.00 4.26
695 697 3.507162 TGTGAGAAATTGGGAGCAGAA 57.493 42.857 0.00 0.00 0.00 3.02
696 698 4.038271 TGTGAGAAATTGGGAGCAGAAT 57.962 40.909 0.00 0.00 0.00 2.40
697 699 5.178096 TGTGAGAAATTGGGAGCAGAATA 57.822 39.130 0.00 0.00 0.00 1.75
698 700 5.188434 TGTGAGAAATTGGGAGCAGAATAG 58.812 41.667 0.00 0.00 0.00 1.73
699 701 5.189180 GTGAGAAATTGGGAGCAGAATAGT 58.811 41.667 0.00 0.00 0.00 2.12
700 702 5.649831 GTGAGAAATTGGGAGCAGAATAGTT 59.350 40.000 0.00 0.00 0.00 2.24
701 703 6.151817 GTGAGAAATTGGGAGCAGAATAGTTT 59.848 38.462 0.00 0.00 0.00 2.66
702 704 6.721208 TGAGAAATTGGGAGCAGAATAGTTTT 59.279 34.615 0.00 0.00 0.00 2.43
703 705 7.233348 TGAGAAATTGGGAGCAGAATAGTTTTT 59.767 33.333 0.00 0.00 0.00 1.94
723 725 4.568152 TTTTTAGAGCAACTTGTGAGCC 57.432 40.909 0.00 0.00 0.00 4.70
724 726 2.928801 TTAGAGCAACTTGTGAGCCA 57.071 45.000 0.00 0.00 0.00 4.75
725 727 2.462456 TAGAGCAACTTGTGAGCCAG 57.538 50.000 0.00 0.00 0.00 4.85
860 863 2.622962 CCGTTCCGTTTCCCCTTGC 61.623 63.158 0.00 0.00 0.00 4.01
880 883 1.679153 CCTCTCTCCGTCTTTAGGCTC 59.321 57.143 0.00 0.00 0.00 4.70
925 928 4.813526 CGTCTCGCTCGTCGGGTG 62.814 72.222 0.00 0.00 40.26 4.61
1151 1163 0.173708 CTCTTCCAGCTCACGGTACC 59.826 60.000 0.16 0.16 0.00 3.34
1262 1294 3.543460 CGCGGTAGATTTGGTTTCGAATC 60.543 47.826 0.00 0.00 41.79 2.52
1295 1327 4.577283 GCTGTTGCGTTTATTATTAGGGGA 59.423 41.667 0.00 0.00 0.00 4.81
1305 1337 8.234546 CGTTTATTATTAGGGGAAATTCATCCG 58.765 37.037 0.00 0.00 40.62 4.18
1308 1340 9.953565 TTATTATTAGGGGAAATTCATCCGTAG 57.046 33.333 0.00 0.00 40.62 3.51
1310 1342 5.961398 TTAGGGGAAATTCATCCGTAGAA 57.039 39.130 0.00 0.00 40.62 2.10
1311 1343 4.423625 AGGGGAAATTCATCCGTAGAAG 57.576 45.455 0.00 0.00 40.62 2.85
1312 1344 4.037927 AGGGGAAATTCATCCGTAGAAGA 58.962 43.478 0.00 0.00 40.62 2.87
1313 1345 4.473559 AGGGGAAATTCATCCGTAGAAGAA 59.526 41.667 0.00 0.00 40.62 2.52
1314 1346 5.045140 AGGGGAAATTCATCCGTAGAAGAAA 60.045 40.000 0.00 0.00 40.62 2.52
1315 1347 5.650703 GGGGAAATTCATCCGTAGAAGAAAA 59.349 40.000 0.00 0.00 40.62 2.29
1316 1348 6.152154 GGGGAAATTCATCCGTAGAAGAAAAA 59.848 38.462 0.00 0.00 40.62 1.94
1322 1354 9.810545 AATTCATCCGTAGAAGAAAAACAAAAA 57.189 25.926 0.00 0.00 33.71 1.94
1364 1401 2.401583 TGGCGTGTGCTTTGAGATAT 57.598 45.000 0.00 0.00 42.25 1.63
1365 1402 2.279741 TGGCGTGTGCTTTGAGATATC 58.720 47.619 0.00 0.00 42.25 1.63
1366 1403 2.093500 TGGCGTGTGCTTTGAGATATCT 60.093 45.455 4.47 4.47 42.25 1.98
1367 1404 2.286294 GGCGTGTGCTTTGAGATATCTG 59.714 50.000 10.74 0.00 42.25 2.90
1368 1405 3.190079 GCGTGTGCTTTGAGATATCTGA 58.810 45.455 10.74 0.00 38.39 3.27
1387 1427 6.992063 TCTGATGAAGCAATTAGTTTCTCC 57.008 37.500 0.00 0.00 38.19 3.71
1415 1457 1.592669 CTGCGATCTAACCGGCCAG 60.593 63.158 0.00 0.00 0.00 4.85
1620 1672 1.967066 CCTGGTAGCTATGAGGAGGTG 59.033 57.143 13.45 0.00 0.00 4.00
1781 1833 1.950909 CTCCGAGGTCACTCAGGTATC 59.049 57.143 0.00 0.00 44.17 2.24
1782 1834 1.033574 CCGAGGTCACTCAGGTATCC 58.966 60.000 0.00 0.00 44.17 2.59
1863 1915 2.603075 AATTGCCTGCCTTCCTGTTA 57.397 45.000 0.00 0.00 0.00 2.41
1866 1918 1.838112 TGCCTGCCTTCCTGTTAATG 58.162 50.000 0.00 0.00 0.00 1.90
2002 2056 0.317160 CTGTTCACGGTAGTCCAGCA 59.683 55.000 0.00 0.00 0.00 4.41
2009 2063 0.108615 CGGTAGTCCAGCAGGTTCAG 60.109 60.000 0.00 0.00 35.89 3.02
2010 2064 0.977395 GGTAGTCCAGCAGGTTCAGT 59.023 55.000 0.00 0.00 35.89 3.41
2036 2090 9.021807 TGTACTGTAGCTGTCTTAAGTCTTAAT 57.978 33.333 5.50 0.00 0.00 1.40
2037 2091 9.857957 GTACTGTAGCTGTCTTAAGTCTTAATT 57.142 33.333 5.50 0.00 0.00 1.40
2060 2114 7.639113 TTACAATTTTGAACACTCTTCACCT 57.361 32.000 0.00 0.00 0.00 4.00
2090 2144 9.897744 ACAGTATGAAACTACATTGACAAAATG 57.102 29.630 0.00 0.00 39.69 2.32
2096 2150 9.337396 TGAAACTACATTGACAAAATGTACTCT 57.663 29.630 6.79 0.00 40.87 3.24
2097 2151 9.599322 GAAACTACATTGACAAAATGTACTCTG 57.401 33.333 6.79 1.74 40.87 3.35
2130 2192 5.738619 TTCTTGAGCAGTACTATGTTGGA 57.261 39.130 0.00 0.00 0.00 3.53
2137 2199 4.130118 GCAGTACTATGTTGGAAGATGGG 58.870 47.826 0.00 0.00 0.00 4.00
2144 2206 9.574516 GTACTATGTTGGAAGATGGGATAATTT 57.425 33.333 0.00 0.00 0.00 1.82
2159 2221 7.577303 TGGGATAATTTTTCTCTCAGCATAGT 58.423 34.615 0.00 0.00 0.00 2.12
2172 2234 8.939929 TCTCTCAGCATAGTTTTTCATTAACTG 58.060 33.333 0.00 0.00 36.56 3.16
2175 2237 7.518161 TCAGCATAGTTTTTCATTAACTGACG 58.482 34.615 0.00 0.00 36.56 4.35
2196 2258 4.109766 CGAAACGAGCACTGGTGATATAA 58.890 43.478 4.79 0.00 0.00 0.98
2199 2261 5.847111 AACGAGCACTGGTGATATAACTA 57.153 39.130 4.79 0.00 0.00 2.24
2230 2292 4.478699 GTTTCTTTATTACGGGCCAACAC 58.521 43.478 4.39 0.00 0.00 3.32
2231 2293 3.420300 TCTTTATTACGGGCCAACACA 57.580 42.857 4.39 0.00 0.00 3.72
2236 2298 0.955178 TTACGGGCCAACACAACATG 59.045 50.000 4.39 0.00 0.00 3.21
2342 2404 5.942826 AGATTTTGAAGGGAAGACTGATGAC 59.057 40.000 0.00 0.00 0.00 3.06
2778 2856 4.141367 TGAGTAATTGGGACCAAGTTGTGA 60.141 41.667 9.47 0.00 39.47 3.58
2954 3038 9.626045 GGTTTTATTGGAGAATTGTGAACTTAG 57.374 33.333 0.00 0.00 0.00 2.18
2971 3055 8.480066 GTGAACTTAGCATTGCTTTTAGTTTTC 58.520 33.333 17.71 12.67 40.44 2.29
2992 3079 4.569943 TCTTATCTGGATCATTTAGGCGC 58.430 43.478 0.00 0.00 0.00 6.53
3171 3278 5.512788 GCAGTGATATTTTCATGTTTGTCCG 59.487 40.000 0.00 0.00 36.54 4.79
3358 3465 6.234177 GCTACCTTTGCAGAATATGGTAGAT 58.766 40.000 22.93 0.00 45.74 1.98
3631 3738 9.405083 CTTAAATGTACGTTGATGATCGTTTAC 57.595 33.333 0.00 0.00 40.70 2.01
3733 3840 9.693739 TTTTCTAGGCATTTTACTATCCAATGA 57.306 29.630 0.00 0.00 30.66 2.57
3932 4045 2.109304 TCCCTCCGTCCCAAAATTCTTT 59.891 45.455 0.00 0.00 0.00 2.52
3938 4051 6.349363 CCTCCGTCCCAAAATTCTTTTCTTAG 60.349 42.308 0.00 0.00 0.00 2.18
3942 4055 7.542130 CCGTCCCAAAATTCTTTTCTTAGATTG 59.458 37.037 0.00 0.00 0.00 2.67
3945 4058 8.367156 TCCCAAAATTCTTTTCTTAGATTGGTG 58.633 33.333 6.32 0.35 33.15 4.17
4032 4145 1.282157 AGAATTTTGGGACGGAGGGAG 59.718 52.381 0.00 0.00 0.00 4.30
4035 4148 0.978907 TTTTGGGACGGAGGGAGTAC 59.021 55.000 0.00 0.00 0.00 2.73
4216 4581 2.945510 CCACAAGTGGCTGCATGTA 58.054 52.632 6.27 0.00 44.73 2.29
4217 4582 0.806868 CCACAAGTGGCTGCATGTAG 59.193 55.000 6.42 6.42 44.73 2.74
4300 4665 8.810652 TTTTGTGCTAATGTTTTCCTGTATTC 57.189 30.769 0.00 0.00 0.00 1.75
4344 4709 8.440833 CACTATTAAACTTTGGAACTAACTCCG 58.559 37.037 0.00 0.00 38.44 4.63
4447 5390 7.390823 TCTTGTGTGCTGTAATTGGTATAGAA 58.609 34.615 0.00 0.00 0.00 2.10
4550 6786 3.189287 CCGCTATGGTCTGCATTATTTCC 59.811 47.826 0.00 0.00 0.00 3.13
4701 6938 5.002464 ACATATGTGGAGCATTTTTGAGC 57.998 39.130 7.78 0.00 38.94 4.26
4724 6961 5.502544 GCGTCTATGACAAGTAATGCCTTTC 60.503 44.000 0.00 0.00 32.09 2.62
5591 7875 7.201821 GCCTGCTCCATAAATATGTAAGTTGTT 60.202 37.037 0.16 0.00 31.82 2.83
5681 7965 2.730382 TCTCCACTCGGTAAGCATGTA 58.270 47.619 0.00 0.00 0.00 2.29
5766 8050 2.545537 AAAGGACCGAGAAACCTGAC 57.454 50.000 0.00 0.00 34.03 3.51
5798 8082 3.431415 GGTATGGTCTTTCCCAGCTTTT 58.569 45.455 0.00 0.00 38.07 2.27
5818 8102 0.730494 GCTTTGTTCTGTCATGGCGC 60.730 55.000 0.00 0.00 0.00 6.53
5819 8103 0.877071 CTTTGTTCTGTCATGGCGCT 59.123 50.000 7.64 0.00 0.00 5.92
5820 8104 1.267806 CTTTGTTCTGTCATGGCGCTT 59.732 47.619 7.64 0.00 0.00 4.68
5837 8121 7.265647 TGGCGCTTATTATTATTAAGCAACA 57.734 32.000 21.36 17.48 44.52 3.33
5838 8122 7.136119 TGGCGCTTATTATTATTAAGCAACAC 58.864 34.615 21.36 12.78 44.52 3.32
5851 8135 7.935338 ATTAAGCAACACAATCTGAAAGTTG 57.065 32.000 0.00 0.00 41.71 3.16
5971 8259 2.223618 GGATAGCAGAAGAGACCACGAC 60.224 54.545 0.00 0.00 0.00 4.34
6046 8334 0.039617 GAGATCATGACCGCTCCTCG 60.040 60.000 0.00 0.00 38.08 4.63
6246 8535 3.078843 ATGGCTGGCTGATTCCCCC 62.079 63.158 2.00 0.00 0.00 5.40
6334 8624 5.707764 GCTTTGTACTGGAGAAAGGAAGATT 59.292 40.000 11.08 0.00 38.56 2.40
6371 8661 0.647410 CGCTGCTGGATTGTTAGTCG 59.353 55.000 0.00 0.00 0.00 4.18
6378 8670 3.118884 GCTGGATTGTTAGTCGAACCCTA 60.119 47.826 0.00 0.00 37.22 3.53
6381 8673 4.468510 TGGATTGTTAGTCGAACCCTATGT 59.531 41.667 0.00 0.00 37.22 2.29
6390 8682 4.995487 AGTCGAACCCTATGTTTCTGTTTC 59.005 41.667 0.00 0.00 37.29 2.78
6392 8684 4.994852 TCGAACCCTATGTTTCTGTTTCAG 59.005 41.667 0.00 0.00 37.29 3.02
6393 8685 4.755123 CGAACCCTATGTTTCTGTTTCAGT 59.245 41.667 0.00 0.00 37.29 3.41
6395 8687 5.568620 ACCCTATGTTTCTGTTTCAGTCT 57.431 39.130 0.00 0.00 32.61 3.24
6430 8722 3.678056 TCTGACCTGATGTTGTGTACC 57.322 47.619 0.00 0.00 0.00 3.34
6434 8726 3.006859 TGACCTGATGTTGTGTACCAGAG 59.993 47.826 0.00 0.00 0.00 3.35
6464 8757 9.270640 ACTGTTTTATATGTTACCAACGTGTAA 57.729 29.630 0.00 0.00 33.81 2.41
6509 8802 2.597510 GGCCCGCCTGTCAAACTT 60.598 61.111 0.00 0.00 0.00 2.66
6563 8856 8.213518 TCTTGTGATGGTATTGAGCTAATTTC 57.786 34.615 0.00 0.00 0.00 2.17
6569 8862 4.407621 TGGTATTGAGCTAATTTCCTCCGA 59.592 41.667 0.00 0.00 0.00 4.55
6575 8868 3.863041 AGCTAATTTCCTCCGACTTGTC 58.137 45.455 0.00 0.00 0.00 3.18
6576 8869 2.603560 GCTAATTTCCTCCGACTTGTCG 59.396 50.000 15.28 15.28 0.00 4.35
6579 8872 0.038526 TTTCCTCCGACTTGTCGAGC 60.039 55.000 22.54 0.00 34.64 5.03
6585 8878 1.025812 CCGACTTGTCGAGCCTCTAT 58.974 55.000 22.54 0.00 34.64 1.98
6594 8887 0.965439 CGAGCCTCTATTCCTCAGGG 59.035 60.000 0.00 0.00 0.00 4.45
6595 8888 1.479573 CGAGCCTCTATTCCTCAGGGA 60.480 57.143 0.00 0.00 40.36 4.20
6596 8889 2.821245 CGAGCCTCTATTCCTCAGGGAT 60.821 54.545 0.00 0.00 41.87 3.85
6597 8890 2.831526 GAGCCTCTATTCCTCAGGGATC 59.168 54.545 0.00 0.00 41.87 3.36
6598 8891 2.180973 AGCCTCTATTCCTCAGGGATCA 59.819 50.000 0.00 0.00 41.87 2.92
6599 8892 3.180507 GCCTCTATTCCTCAGGGATCAT 58.819 50.000 0.00 0.00 41.87 2.45
6601 8894 3.518705 CCTCTATTCCTCAGGGATCATGG 59.481 52.174 0.00 0.00 41.87 3.66
6602 8895 4.166539 CTCTATTCCTCAGGGATCATGGT 58.833 47.826 0.00 0.00 41.87 3.55
6603 8896 4.570926 TCTATTCCTCAGGGATCATGGTT 58.429 43.478 0.00 0.00 41.87 3.67
6604 8897 3.589951 ATTCCTCAGGGATCATGGTTG 57.410 47.619 0.00 0.00 41.87 3.77
6608 8903 3.528905 TCCTCAGGGATCATGGTTGAAAT 59.471 43.478 0.00 0.00 36.57 2.17
6635 8930 8.716674 ATTTTCCATGCCTGATTAGTGATTAT 57.283 30.769 0.00 0.00 0.00 1.28
6636 8931 7.750229 TTTCCATGCCTGATTAGTGATTATC 57.250 36.000 0.00 0.00 0.00 1.75
6637 8932 6.692849 TCCATGCCTGATTAGTGATTATCT 57.307 37.500 0.00 0.00 0.00 1.98
6638 8933 6.470278 TCCATGCCTGATTAGTGATTATCTG 58.530 40.000 0.00 0.00 0.00 2.90
6639 8934 6.270695 TCCATGCCTGATTAGTGATTATCTGA 59.729 38.462 0.00 0.00 0.00 3.27
6640 8935 6.938596 CCATGCCTGATTAGTGATTATCTGAA 59.061 38.462 0.00 0.00 0.00 3.02
6641 8936 7.610692 CCATGCCTGATTAGTGATTATCTGAAT 59.389 37.037 0.00 0.00 0.00 2.57
6643 8938 7.738847 TGCCTGATTAGTGATTATCTGAATCA 58.261 34.615 12.66 12.66 34.56 2.57
6653 8948 7.904558 TGATTATCTGAATCACTGTAGAGGT 57.095 36.000 0.00 0.00 32.21 3.85
6654 8949 7.720442 TGATTATCTGAATCACTGTAGAGGTG 58.280 38.462 0.00 0.00 32.21 4.00
6655 8950 6.471233 TTATCTGAATCACTGTAGAGGTGG 57.529 41.667 0.00 0.00 35.61 4.61
6656 8951 3.779444 TCTGAATCACTGTAGAGGTGGT 58.221 45.455 0.00 0.00 35.61 4.16
6657 8952 4.160329 TCTGAATCACTGTAGAGGTGGTT 58.840 43.478 0.00 0.00 40.22 3.67
6660 8955 4.466370 TGAATCACTGTAGAGGTGGTTAGG 59.534 45.833 0.00 0.00 38.02 2.69
6661 8956 2.176889 TCACTGTAGAGGTGGTTAGGC 58.823 52.381 0.00 0.00 35.61 3.93
6662 8957 2.180276 CACTGTAGAGGTGGTTAGGCT 58.820 52.381 0.00 0.00 0.00 4.58
6663 8958 2.166664 CACTGTAGAGGTGGTTAGGCTC 59.833 54.545 0.00 0.00 0.00 4.70
6664 8959 2.043252 ACTGTAGAGGTGGTTAGGCTCT 59.957 50.000 0.00 0.00 0.00 4.09
6669 8964 2.185387 GAGGTGGTTAGGCTCTGGTTA 58.815 52.381 0.00 0.00 0.00 2.85
6671 8966 2.185387 GGTGGTTAGGCTCTGGTTAGA 58.815 52.381 0.00 0.00 0.00 2.10
6751 9596 2.721425 AAACCCCACATATACACGGG 57.279 50.000 0.00 0.00 39.85 5.28
6756 9601 2.778299 CCCACATATACACGGGGATTG 58.222 52.381 0.00 0.00 41.49 2.67
6769 9617 2.810274 CGGGGATTGATCTGCATACTTG 59.190 50.000 0.00 0.00 0.00 3.16
6771 9619 4.503123 CGGGGATTGATCTGCATACTTGTA 60.503 45.833 0.00 0.00 0.00 2.41
6773 9621 5.827797 GGGGATTGATCTGCATACTTGTAAA 59.172 40.000 0.00 0.00 0.00 2.01
6774 9622 6.321181 GGGGATTGATCTGCATACTTGTAAAA 59.679 38.462 0.00 0.00 0.00 1.52
6775 9623 7.014615 GGGGATTGATCTGCATACTTGTAAAAT 59.985 37.037 0.00 0.00 0.00 1.82
6776 9624 8.416329 GGGATTGATCTGCATACTTGTAAAATT 58.584 33.333 0.00 0.00 0.00 1.82
6777 9625 9.807649 GGATTGATCTGCATACTTGTAAAATTT 57.192 29.630 0.00 0.00 0.00 1.82
6801 9649 8.792830 TTCATTTCTAAGTGGATTCAAGTAGG 57.207 34.615 0.00 0.00 0.00 3.18
6802 9650 6.823689 TCATTTCTAAGTGGATTCAAGTAGGC 59.176 38.462 0.00 0.00 0.00 3.93
6803 9651 6.374417 TTTCTAAGTGGATTCAAGTAGGCT 57.626 37.500 0.00 0.00 0.00 4.58
6805 9653 7.676683 TTCTAAGTGGATTCAAGTAGGCTAT 57.323 36.000 0.00 0.00 0.00 2.97
6806 9654 7.676683 TCTAAGTGGATTCAAGTAGGCTATT 57.323 36.000 0.00 0.00 0.00 1.73
6855 9719 5.643379 TCCACTCATGAAATTTTACAGGC 57.357 39.130 0.00 0.00 0.00 4.85
6861 9725 7.485913 CACTCATGAAATTTTACAGGCACATAC 59.514 37.037 0.00 0.00 0.00 2.39
6863 9727 7.761409 TCATGAAATTTTACAGGCACATACTC 58.239 34.615 0.00 0.00 0.00 2.59
6864 9728 6.509418 TGAAATTTTACAGGCACATACTCC 57.491 37.500 0.00 0.00 0.00 3.85
6866 9730 7.398829 TGAAATTTTACAGGCACATACTCCTA 58.601 34.615 0.00 0.00 0.00 2.94
6867 9731 7.552687 TGAAATTTTACAGGCACATACTCCTAG 59.447 37.037 0.00 0.00 0.00 3.02
6868 9732 6.808321 ATTTTACAGGCACATACTCCTAGA 57.192 37.500 0.00 0.00 0.00 2.43
6869 9733 6.808321 TTTTACAGGCACATACTCCTAGAT 57.192 37.500 0.00 0.00 0.00 1.98
6870 9734 7.907841 TTTTACAGGCACATACTCCTAGATA 57.092 36.000 0.00 0.00 0.00 1.98
6872 9736 9.596308 TTTTACAGGCACATACTCCTAGATATA 57.404 33.333 0.00 0.00 0.00 0.86
6878 9742 9.998752 AGGCACATACTCCTAGATATATAAACT 57.001 33.333 0.00 0.00 0.00 2.66
6929 9813 7.553881 TCAGCCTAAGAGCATTTTATGTTAC 57.446 36.000 0.00 0.00 34.23 2.50
6931 9815 6.318648 CAGCCTAAGAGCATTTTATGTTACCA 59.681 38.462 0.00 0.00 34.23 3.25
6932 9816 6.543831 AGCCTAAGAGCATTTTATGTTACCAG 59.456 38.462 0.00 0.00 34.23 4.00
6933 9817 6.238759 GCCTAAGAGCATTTTATGTTACCAGG 60.239 42.308 0.00 0.00 0.00 4.45
6935 9819 7.339466 CCTAAGAGCATTTTATGTTACCAGGTT 59.661 37.037 0.00 0.00 0.00 3.50
6946 9830 3.317711 TGTTACCAGGTTGTGAAATGCAG 59.682 43.478 0.00 0.00 0.00 4.41
6951 9835 4.588528 ACCAGGTTGTGAAATGCAGTAAAT 59.411 37.500 0.00 0.00 0.00 1.40
6952 9836 5.070313 ACCAGGTTGTGAAATGCAGTAAATT 59.930 36.000 0.00 0.00 0.00 1.82
6953 9837 5.634859 CCAGGTTGTGAAATGCAGTAAATTC 59.365 40.000 0.00 0.00 0.00 2.17
6954 9838 6.215121 CAGGTTGTGAAATGCAGTAAATTCA 58.785 36.000 0.00 0.00 0.00 2.57
6956 9840 6.701400 AGGTTGTGAAATGCAGTAAATTCAAC 59.299 34.615 0.00 2.68 33.93 3.18
6957 9841 6.073819 GGTTGTGAAATGCAGTAAATTCAACC 60.074 38.462 16.94 16.94 42.20 3.77
6958 9842 6.403866 TGTGAAATGCAGTAAATTCAACCT 57.596 33.333 0.00 0.00 33.93 3.50
6959 9843 6.215121 TGTGAAATGCAGTAAATTCAACCTG 58.785 36.000 0.00 0.00 33.93 4.00
6960 9844 6.040278 TGTGAAATGCAGTAAATTCAACCTGA 59.960 34.615 0.00 0.00 33.93 3.86
6961 9845 7.092716 GTGAAATGCAGTAAATTCAACCTGAT 58.907 34.615 0.00 0.00 33.93 2.90
6970 9901 5.343307 AAATTCAACCTGATGCCATAACC 57.657 39.130 0.00 0.00 0.00 2.85
6977 9908 2.304092 CTGATGCCATAACCAGCACAT 58.696 47.619 0.00 0.00 42.84 3.21
6978 9909 3.479489 CTGATGCCATAACCAGCACATA 58.521 45.455 0.00 0.00 42.84 2.29
6979 9910 3.479489 TGATGCCATAACCAGCACATAG 58.521 45.455 0.00 0.00 42.84 2.23
6980 9911 3.136260 TGATGCCATAACCAGCACATAGA 59.864 43.478 0.00 0.00 42.84 1.98
6987 9918 5.295292 CCATAACCAGCACATAGAAAGTCAG 59.705 44.000 0.00 0.00 0.00 3.51
6990 9921 2.237143 CCAGCACATAGAAAGTCAGGGA 59.763 50.000 0.00 0.00 0.00 4.20
6992 9923 2.093973 AGCACATAGAAAGTCAGGGACG 60.094 50.000 0.00 0.00 37.67 4.79
6994 9925 3.616560 GCACATAGAAAGTCAGGGACGAA 60.617 47.826 0.00 0.00 37.67 3.85
7004 9935 4.003648 AGTCAGGGACGAACATGAATTTC 58.996 43.478 0.00 0.00 37.67 2.17
7006 9937 4.455877 GTCAGGGACGAACATGAATTTCTT 59.544 41.667 0.00 0.00 0.00 2.52
7008 9939 4.697352 CAGGGACGAACATGAATTTCTTCT 59.303 41.667 0.00 0.00 32.29 2.85
7009 9940 5.874810 CAGGGACGAACATGAATTTCTTCTA 59.125 40.000 0.00 0.00 32.29 2.10
7010 9941 6.036517 CAGGGACGAACATGAATTTCTTCTAG 59.963 42.308 0.00 0.00 32.29 2.43
7035 9966 9.295825 AGAATATAAACAAAACAGATGACACCA 57.704 29.630 0.00 0.00 0.00 4.17
7045 9978 4.728772 ACAGATGACACCATTTTCTCCAA 58.271 39.130 0.00 0.00 32.09 3.53
7051 9984 5.599732 TGACACCATTTTCTCCAACAATTG 58.400 37.500 3.24 3.24 0.00 2.32
7058 9991 6.260493 CCATTTTCTCCAACAATTGCAAAAGA 59.740 34.615 1.71 1.33 0.00 2.52
7068 10001 4.990426 ACAATTGCAAAAGAAGGCATACAC 59.010 37.500 1.71 0.00 40.17 2.90
7069 10002 4.870123 ATTGCAAAAGAAGGCATACACA 57.130 36.364 1.71 0.00 40.17 3.72
7071 10004 4.439305 TGCAAAAGAAGGCATACACATC 57.561 40.909 0.00 0.00 34.58 3.06
7072 10005 4.081406 TGCAAAAGAAGGCATACACATCT 58.919 39.130 0.00 0.00 34.58 2.90
7075 10008 5.123820 GCAAAAGAAGGCATACACATCTACA 59.876 40.000 0.00 0.00 0.00 2.74
7077 10010 4.408182 AGAAGGCATACACATCTACACC 57.592 45.455 0.00 0.00 0.00 4.16
7078 10011 3.134804 AGAAGGCATACACATCTACACCC 59.865 47.826 0.00 0.00 0.00 4.61
7079 10012 2.477245 AGGCATACACATCTACACCCA 58.523 47.619 0.00 0.00 0.00 4.51
7080 10013 2.435805 AGGCATACACATCTACACCCAG 59.564 50.000 0.00 0.00 0.00 4.45
7081 10014 2.485479 GGCATACACATCTACACCCAGG 60.485 54.545 0.00 0.00 0.00 4.45
7082 10015 2.485479 GCATACACATCTACACCCAGGG 60.485 54.545 2.85 2.85 0.00 4.45
7083 10016 1.200519 TACACATCTACACCCAGGGC 58.799 55.000 4.91 0.00 0.00 5.19
7103 10036 2.054363 CGGCAGTAGCATTCTCGTATG 58.946 52.381 0.00 0.00 44.61 2.39
7113 10046 9.627395 AGTAGCATTCTCGTATGATATAAACAC 57.373 33.333 0.00 0.00 30.06 3.32
7114 10047 7.891183 AGCATTCTCGTATGATATAAACACC 57.109 36.000 0.00 0.00 0.00 4.16
7118 10051 9.261180 CATTCTCGTATGATATAAACACCAACT 57.739 33.333 0.00 0.00 0.00 3.16
7120 10053 9.961265 TTCTCGTATGATATAAACACCAACTAG 57.039 33.333 0.00 0.00 0.00 2.57
7137 10070 4.706842 ACTAGAAAACCTGGAGCTTTCA 57.293 40.909 16.88 0.00 32.59 2.69
7138 10071 5.048846 ACTAGAAAACCTGGAGCTTTCAA 57.951 39.130 16.88 0.00 32.59 2.69
7139 10072 5.635120 ACTAGAAAACCTGGAGCTTTCAAT 58.365 37.500 16.88 5.95 32.59 2.57
7140 10073 6.071320 ACTAGAAAACCTGGAGCTTTCAATT 58.929 36.000 16.88 5.48 32.59 2.32
7141 10074 5.876651 AGAAAACCTGGAGCTTTCAATTT 57.123 34.783 16.88 0.00 32.59 1.82
7143 10076 7.360113 AGAAAACCTGGAGCTTTCAATTTTA 57.640 32.000 16.88 0.00 32.59 1.52
7146 10079 5.453567 ACCTGGAGCTTTCAATTTTACAC 57.546 39.130 0.00 0.00 0.00 2.90
7147 10080 4.280929 ACCTGGAGCTTTCAATTTTACACC 59.719 41.667 0.00 0.00 0.00 4.16
7150 10083 3.832490 GGAGCTTTCAATTTTACACCCCT 59.168 43.478 0.00 0.00 0.00 4.79
7151 10084 4.321974 GGAGCTTTCAATTTTACACCCCTG 60.322 45.833 0.00 0.00 0.00 4.45
7152 10085 3.578282 AGCTTTCAATTTTACACCCCTGG 59.422 43.478 0.00 0.00 0.00 4.45
7153 10086 3.323691 GCTTTCAATTTTACACCCCTGGT 59.676 43.478 0.00 0.00 35.62 4.00
7154 10087 4.560716 GCTTTCAATTTTACACCCCTGGTC 60.561 45.833 0.00 0.00 31.02 4.02
7155 10088 3.163616 TCAATTTTACACCCCTGGTCC 57.836 47.619 0.00 0.00 31.02 4.46
7156 10089 2.176045 CAATTTTACACCCCTGGTCCC 58.824 52.381 0.00 0.00 31.02 4.46
7179 10142 2.791347 AGTAGACTCTCCTCTTGCGA 57.209 50.000 0.00 0.00 0.00 5.10
7182 10145 1.917872 AGACTCTCCTCTTGCGAACT 58.082 50.000 0.00 0.00 0.00 3.01
7212 10175 2.648102 GAGCGGATGACGTCGTCG 60.648 66.667 26.93 22.50 46.52 5.12
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
148 149 8.892723 CAAGGTATGTATTGCTCAAACTTCATA 58.107 33.333 0.00 0.00 0.00 2.15
314 315 2.747686 GACCGTTCAGGCTTCCCA 59.252 61.111 0.00 0.00 46.52 4.37
366 367 0.471211 TCCCACTTTCACCCTCGTCT 60.471 55.000 0.00 0.00 0.00 4.18
455 457 0.449993 GCGCGGTCGAAAACACTTAC 60.450 55.000 8.83 0.00 38.10 2.34
496 498 4.916273 GGCGCGCAAAAACGGTGT 62.916 61.111 34.42 0.00 0.00 4.16
550 552 2.277884 CGCCGCAAATTAAGCCGG 60.278 61.111 0.00 0.00 0.00 6.13
555 557 2.096782 CGTCGCGCCGCAAATTAA 59.903 55.556 10.75 0.00 0.00 1.40
606 608 1.824230 AGAAGAATGCAGAGACTCGCT 59.176 47.619 16.48 2.18 0.00 4.93
607 609 2.292103 AGAAGAATGCAGAGACTCGC 57.708 50.000 10.97 10.97 0.00 5.03
608 610 2.348059 GCAAGAAGAATGCAGAGACTCG 59.652 50.000 0.00 0.00 43.29 4.18
617 619 2.223144 TGTACGTGTGCAAGAAGAATGC 59.777 45.455 0.00 0.00 44.08 3.56
618 620 3.494626 ACTGTACGTGTGCAAGAAGAATG 59.505 43.478 0.00 0.00 0.00 2.67
619 621 3.728845 ACTGTACGTGTGCAAGAAGAAT 58.271 40.909 0.00 0.00 0.00 2.40
620 622 3.173668 ACTGTACGTGTGCAAGAAGAA 57.826 42.857 0.00 0.00 0.00 2.52
621 623 2.882927 ACTGTACGTGTGCAAGAAGA 57.117 45.000 0.00 0.00 0.00 2.87
622 624 3.377439 TGTACTGTACGTGTGCAAGAAG 58.623 45.455 12.87 0.00 0.00 2.85
623 625 3.067040 TCTGTACTGTACGTGTGCAAGAA 59.933 43.478 12.87 0.00 30.34 2.52
624 626 2.619646 TCTGTACTGTACGTGTGCAAGA 59.380 45.455 12.87 5.79 30.34 3.02
625 627 3.007979 TCTGTACTGTACGTGTGCAAG 57.992 47.619 12.87 3.64 30.34 4.01
626 628 3.653539 ATCTGTACTGTACGTGTGCAA 57.346 42.857 12.87 3.95 30.34 4.08
627 629 3.427098 GCTATCTGTACTGTACGTGTGCA 60.427 47.826 12.87 8.69 0.00 4.57
628 630 3.106672 GCTATCTGTACTGTACGTGTGC 58.893 50.000 12.87 9.44 0.00 4.57
629 631 4.343609 CAGCTATCTGTACTGTACGTGTG 58.656 47.826 12.87 4.15 35.61 3.82
630 632 4.617808 CAGCTATCTGTACTGTACGTGT 57.382 45.455 12.87 4.21 35.61 4.49
671 673 4.648762 TCTGCTCCCAATTTCTCACAAAAA 59.351 37.500 0.00 0.00 0.00 1.94
672 674 4.214310 TCTGCTCCCAATTTCTCACAAAA 58.786 39.130 0.00 0.00 0.00 2.44
673 675 3.831323 TCTGCTCCCAATTTCTCACAAA 58.169 40.909 0.00 0.00 0.00 2.83
674 676 3.507162 TCTGCTCCCAATTTCTCACAA 57.493 42.857 0.00 0.00 0.00 3.33
675 677 3.507162 TTCTGCTCCCAATTTCTCACA 57.493 42.857 0.00 0.00 0.00 3.58
676 678 5.189180 ACTATTCTGCTCCCAATTTCTCAC 58.811 41.667 0.00 0.00 0.00 3.51
677 679 5.441718 ACTATTCTGCTCCCAATTTCTCA 57.558 39.130 0.00 0.00 0.00 3.27
678 680 6.765915 AAACTATTCTGCTCCCAATTTCTC 57.234 37.500 0.00 0.00 0.00 2.87
679 681 7.544804 AAAAACTATTCTGCTCCCAATTTCT 57.455 32.000 0.00 0.00 0.00 2.52
702 704 3.951037 TGGCTCACAAGTTGCTCTAAAAA 59.049 39.130 1.81 0.00 0.00 1.94
703 705 3.550820 TGGCTCACAAGTTGCTCTAAAA 58.449 40.909 1.81 0.00 0.00 1.52
704 706 3.141398 CTGGCTCACAAGTTGCTCTAAA 58.859 45.455 1.81 0.00 0.00 1.85
705 707 2.771089 CTGGCTCACAAGTTGCTCTAA 58.229 47.619 1.81 0.00 0.00 2.10
706 708 1.609061 GCTGGCTCACAAGTTGCTCTA 60.609 52.381 1.81 0.00 0.00 2.43
707 709 0.888285 GCTGGCTCACAAGTTGCTCT 60.888 55.000 1.81 0.00 0.00 4.09
708 710 1.578423 GCTGGCTCACAAGTTGCTC 59.422 57.895 1.81 0.00 0.00 4.26
709 711 2.256591 CGCTGGCTCACAAGTTGCT 61.257 57.895 1.81 0.00 0.00 3.91
710 712 2.253452 CGCTGGCTCACAAGTTGC 59.747 61.111 1.81 0.00 0.00 4.17
711 713 2.949106 CCGCTGGCTCACAAGTTG 59.051 61.111 0.00 0.00 0.00 3.16
712 714 2.980233 GCCGCTGGCTCACAAGTT 60.980 61.111 11.61 0.00 46.69 2.66
822 825 1.229529 ACACCTGGGAGGATTCGGT 60.230 57.895 0.00 0.00 37.67 4.69
860 863 1.679153 GAGCCTAAAGACGGAGAGAGG 59.321 57.143 0.00 0.00 0.00 3.69
925 928 4.813161 GGTTTATACGAAGCTAGGGTTTCC 59.187 45.833 0.00 0.00 30.48 3.13
1151 1163 3.537874 GACGGGGATGGACGGGAG 61.538 72.222 0.00 0.00 0.00 4.30
1236 1268 2.900337 CCAAATCTACCGCGGGCC 60.900 66.667 31.76 0.00 0.00 5.80
1243 1275 3.242641 GCCGATTCGAAACCAAATCTACC 60.243 47.826 7.83 0.00 31.15 3.18
1275 1307 8.192110 TGAATTTCCCCTAATAATAAACGCAAC 58.808 33.333 0.00 0.00 0.00 4.17
1288 1320 5.664006 TCTTCTACGGATGAATTTCCCCTAA 59.336 40.000 0.00 0.00 31.61 2.69
1289 1321 5.213519 TCTTCTACGGATGAATTTCCCCTA 58.786 41.667 0.00 0.00 31.61 3.53
1290 1322 4.037927 TCTTCTACGGATGAATTTCCCCT 58.962 43.478 0.00 0.00 31.61 4.79
1291 1323 4.417426 TCTTCTACGGATGAATTTCCCC 57.583 45.455 0.00 0.00 31.61 4.81
1295 1327 9.810545 TTTTGTTTTTCTTCTACGGATGAATTT 57.189 25.926 0.00 0.00 36.15 1.82
1322 1354 6.702282 CCATACACCACGGTTTTTATTTTGTT 59.298 34.615 0.00 0.00 0.00 2.83
1324 1356 5.119434 GCCATACACCACGGTTTTTATTTTG 59.881 40.000 0.00 0.00 0.00 2.44
1325 1357 5.231702 GCCATACACCACGGTTTTTATTTT 58.768 37.500 0.00 0.00 0.00 1.82
1329 1361 1.805345 CGCCATACACCACGGTTTTTA 59.195 47.619 0.00 0.00 0.00 1.52
1364 1401 6.596888 CAGGAGAAACTAATTGCTTCATCAGA 59.403 38.462 0.00 0.00 0.00 3.27
1365 1402 6.373774 ACAGGAGAAACTAATTGCTTCATCAG 59.626 38.462 0.00 0.00 0.00 2.90
1366 1403 6.149973 CACAGGAGAAACTAATTGCTTCATCA 59.850 38.462 0.00 0.00 0.00 3.07
1367 1404 6.150140 ACACAGGAGAAACTAATTGCTTCATC 59.850 38.462 0.00 0.00 0.00 2.92
1368 1405 6.006449 ACACAGGAGAAACTAATTGCTTCAT 58.994 36.000 0.00 0.00 0.00 2.57
1387 1427 3.246226 GGTTAGATCGCAGCATAACACAG 59.754 47.826 0.00 0.00 31.25 3.66
1415 1457 4.083324 TCCATTTTCTGTCATGAGCGAAAC 60.083 41.667 15.30 0.00 0.00 2.78
1502 1544 5.465390 TGCCGCATAAGTAACAGATGTAATC 59.535 40.000 0.00 0.00 46.04 1.75
1504 1546 4.569162 GTGCCGCATAAGTAACAGATGTAA 59.431 41.667 0.00 0.00 0.00 2.41
1620 1672 0.036306 TCTCCGTCCCCTTTGCTTTC 59.964 55.000 0.00 0.00 0.00 2.62
1698 1750 1.092345 GTTTGAGCGCCCTCTGGATC 61.092 60.000 2.29 0.00 38.93 3.36
1863 1915 5.585390 CAACTTCTTCAGACTGCAAACATT 58.415 37.500 0.00 0.00 0.00 2.71
1866 1918 3.366719 GCAACTTCTTCAGACTGCAAAC 58.633 45.455 0.00 0.00 35.88 2.93
2002 2056 3.231818 ACAGCTACAGTACACTGAACCT 58.768 45.455 16.05 5.68 46.59 3.50
2009 2063 6.256912 AGACTTAAGACAGCTACAGTACAC 57.743 41.667 10.09 0.00 0.00 2.90
2010 2064 6.896021 AAGACTTAAGACAGCTACAGTACA 57.104 37.500 10.09 0.00 0.00 2.90
2036 2090 7.338196 TCAGGTGAAGAGTGTTCAAAATTGTAA 59.662 33.333 3.97 0.00 0.00 2.41
2037 2091 6.826231 TCAGGTGAAGAGTGTTCAAAATTGTA 59.174 34.615 3.97 0.00 0.00 2.41
2060 2114 7.213678 TGTCAATGTAGTTTCATACTGTGTCA 58.786 34.615 0.00 0.00 37.73 3.58
2090 2144 9.567848 GCTCAAGAATATATTAGAGCAGAGTAC 57.432 37.037 26.30 8.62 45.67 2.73
2112 2170 5.395657 CCATCTTCCAACATAGTACTGCTCA 60.396 44.000 5.39 0.00 0.00 4.26
2126 2187 8.115384 TGAGAGAAAAATTATCCCATCTTCCAA 58.885 33.333 0.00 0.00 0.00 3.53
2130 2192 7.121382 TGCTGAGAGAAAAATTATCCCATCTT 58.879 34.615 0.00 0.00 0.00 2.40
2159 2221 5.905181 GCTCGTTTCGTCAGTTAATGAAAAA 59.095 36.000 0.00 0.00 40.43 1.94
2172 2234 0.596600 TCACCAGTGCTCGTTTCGTC 60.597 55.000 0.00 0.00 0.00 4.20
2175 2237 5.109903 AGTTATATCACCAGTGCTCGTTTC 58.890 41.667 0.00 0.00 0.00 2.78
2199 2261 7.013942 GGCCCGTAATAAAGAAACCAGATAATT 59.986 37.037 0.00 0.00 0.00 1.40
2230 2292 2.999331 ACGGTTTCCTATCCCATGTTG 58.001 47.619 0.00 0.00 0.00 3.33
2231 2293 3.135895 CCTACGGTTTCCTATCCCATGTT 59.864 47.826 0.00 0.00 0.00 2.71
2236 2298 2.675583 ACTCCTACGGTTTCCTATCCC 58.324 52.381 0.00 0.00 0.00 3.85
2301 2363 6.098124 TCAAAATCTGTTTGGGAAGTGTTGAT 59.902 34.615 0.00 0.00 0.00 2.57
2732 2804 8.984891 TCACACAAATATATGCTTTCAAAAGG 57.015 30.769 4.76 0.00 36.53 3.11
2778 2856 9.692325 AAGCTAGAATGTATTGGAGAAAATTCT 57.308 29.630 0.00 0.00 41.00 2.40
2920 2998 9.981114 ACAATTCTCCAATAAAACCTTTTAGTG 57.019 29.630 9.86 9.86 44.04 2.74
2954 3038 8.028938 TCCAGATAAGAAAACTAAAAGCAATGC 58.971 33.333 0.00 0.00 0.00 3.56
2971 3055 3.369147 CGCGCCTAAATGATCCAGATAAG 59.631 47.826 0.00 0.00 0.00 1.73
2992 3079 4.811555 TGAGGTCAAAAACATCAAGTCG 57.188 40.909 0.00 0.00 45.13 4.18
3171 3278 1.345415 TCCCTTGTTCACCTACCGAAC 59.655 52.381 0.00 0.00 42.52 3.95
3334 3441 5.611374 TCTACCATATTCTGCAAAGGTAGC 58.389 41.667 11.15 0.00 45.08 3.58
3358 3465 7.231925 TCAGTGACCTAACAGTGTCAAGTTATA 59.768 37.037 0.00 0.00 42.67 0.98
3367 3474 5.047235 GGAAGTATCAGTGACCTAACAGTGT 60.047 44.000 0.00 0.00 40.70 3.55
3577 3684 1.556911 ACCTAGTGTGCTAGCAATGCT 59.443 47.619 21.29 18.77 42.51 3.79
3578 3685 2.029838 ACCTAGTGTGCTAGCAATGC 57.970 50.000 21.29 12.40 42.51 3.56
3733 3840 8.537016 TGCATGTAAGACTTGGTAGTAAATACT 58.463 33.333 0.00 0.00 40.24 2.12
3932 4045 9.159254 ACATCCATATCTACACCAATCTAAGAA 57.841 33.333 0.00 0.00 0.00 2.52
3942 4055 9.026121 AGTGTTAGATACATCCATATCTACACC 57.974 37.037 18.91 8.02 41.68 4.16
4216 4581 8.737175 TCTGACGATATAGTTACACAAAGTTCT 58.263 33.333 0.00 0.00 0.00 3.01
4217 4582 8.906636 TCTGACGATATAGTTACACAAAGTTC 57.093 34.615 0.00 0.00 0.00 3.01
4447 5390 6.459670 TGAATATGAAGAATGCACAATGCT 57.540 33.333 2.02 0.00 45.31 3.79
4550 6786 8.507524 AAAAGGAAAAGAATAGATAACCCTCG 57.492 34.615 0.00 0.00 0.00 4.63
4701 6938 5.580691 TGAAAGGCATTACTTGTCATAGACG 59.419 40.000 0.00 0.00 34.95 4.18
4724 6961 9.552114 GAATCAACATTTTACAAGTGAGAGATG 57.448 33.333 0.00 0.00 0.00 2.90
5034 7272 7.056002 ACAAACTTAGAAAAACGGCAAAAAG 57.944 32.000 0.00 0.00 0.00 2.27
5766 8050 1.676529 AGACCATACCGTCTGTCATCG 59.323 52.381 0.00 0.00 41.60 3.84
5798 8082 0.592637 CGCCATGACAGAACAAAGCA 59.407 50.000 0.00 0.00 0.00 3.91
5809 8093 7.954906 GCTTAATAATAATAAGCGCCATGAC 57.045 36.000 2.29 0.00 43.94 3.06
5837 8121 7.823745 AACCAAGTATCAACTTTCAGATTGT 57.176 32.000 0.00 0.00 43.60 2.71
5838 8122 9.185192 GAAAACCAAGTATCAACTTTCAGATTG 57.815 33.333 0.00 0.00 43.60 2.67
5851 8135 6.768381 CCCTTGATCTAGGAAAACCAAGTATC 59.232 42.308 22.97 0.00 37.50 2.24
5971 8259 1.373497 GCGCCTATCACGATCCCTG 60.373 63.158 0.00 0.00 0.00 4.45
6046 8334 0.528684 GGTCATGCTCTCTACCACGC 60.529 60.000 0.00 0.00 32.04 5.34
6252 8541 2.293318 ATGCAGGAAGACGGGAGCA 61.293 57.895 0.00 0.00 36.34 4.26
6253 8542 1.817099 CATGCAGGAAGACGGGAGC 60.817 63.158 0.00 0.00 0.00 4.70
6257 8547 2.101415 TCACTATCATGCAGGAAGACGG 59.899 50.000 4.62 0.00 0.00 4.79
6334 8624 3.248363 CAGCGAAGACAAACATCAAGACA 59.752 43.478 0.00 0.00 0.00 3.41
6371 8661 5.998363 AGACTGAAACAGAAACATAGGGTTC 59.002 40.000 0.00 0.00 35.13 3.62
6378 8670 9.566432 AGAAAAGATAGACTGAAACAGAAACAT 57.434 29.630 5.76 0.00 35.18 2.71
6381 8673 8.964476 ACAGAAAAGATAGACTGAAACAGAAA 57.036 30.769 5.76 0.00 35.18 2.52
6459 8751 6.905609 GCTTGAGTAACACAAAACTCTTACAC 59.094 38.462 4.32 0.00 42.17 2.90
6464 8757 4.781934 AGGCTTGAGTAACACAAAACTCT 58.218 39.130 4.32 0.00 42.17 3.24
6533 8826 7.129457 AGCTCAATACCATCACAAGATAAGA 57.871 36.000 0.00 0.00 31.88 2.10
6552 8845 3.260884 ACAAGTCGGAGGAAATTAGCTCA 59.739 43.478 0.00 0.00 0.00 4.26
6569 8862 2.691011 GAGGAATAGAGGCTCGACAAGT 59.309 50.000 9.22 0.00 0.00 3.16
6575 8868 0.965439 CCCTGAGGAATAGAGGCTCG 59.035 60.000 9.22 0.00 33.47 5.03
6576 8869 2.390225 TCCCTGAGGAATAGAGGCTC 57.610 55.000 6.34 6.34 40.08 4.70
6594 8887 8.553696 GCATGGAAAATTATTTCAACCATGATC 58.446 33.333 30.79 20.59 45.53 2.92
6595 8888 7.499895 GGCATGGAAAATTATTTCAACCATGAT 59.500 33.333 30.79 12.34 45.53 2.45
6596 8889 6.822676 GGCATGGAAAATTATTTCAACCATGA 59.177 34.615 30.79 10.15 45.53 3.07
6597 8890 6.824704 AGGCATGGAAAATTATTTCAACCATG 59.175 34.615 26.90 26.90 45.53 3.66
6598 8891 6.824704 CAGGCATGGAAAATTATTTCAACCAT 59.175 34.615 13.75 13.75 45.53 3.55
6599 8892 6.013898 TCAGGCATGGAAAATTATTTCAACCA 60.014 34.615 0.00 11.29 45.53 3.67
6601 8894 8.496707 AATCAGGCATGGAAAATTATTTCAAC 57.503 30.769 0.00 0.00 45.53 3.18
6602 8895 9.820725 CTAATCAGGCATGGAAAATTATTTCAA 57.179 29.630 0.00 0.00 45.53 2.69
6603 8896 8.980596 ACTAATCAGGCATGGAAAATTATTTCA 58.019 29.630 0.00 0.00 45.53 2.69
6604 8897 9.252962 CACTAATCAGGCATGGAAAATTATTTC 57.747 33.333 0.00 0.00 43.46 2.17
6608 8903 8.537728 AATCACTAATCAGGCATGGAAAATTA 57.462 30.769 0.00 0.00 0.00 1.40
6635 8930 3.779444 ACCACCTCTACAGTGATTCAGA 58.221 45.455 0.00 0.00 37.42 3.27
6636 8931 4.543590 AACCACCTCTACAGTGATTCAG 57.456 45.455 0.00 0.00 37.42 3.02
6637 8932 4.466370 CCTAACCACCTCTACAGTGATTCA 59.534 45.833 0.00 0.00 37.42 2.57
6638 8933 4.680975 GCCTAACCACCTCTACAGTGATTC 60.681 50.000 0.00 0.00 37.42 2.52
6639 8934 3.197983 GCCTAACCACCTCTACAGTGATT 59.802 47.826 0.00 0.00 37.42 2.57
6640 8935 2.766828 GCCTAACCACCTCTACAGTGAT 59.233 50.000 0.00 0.00 37.42 3.06
6641 8936 2.176889 GCCTAACCACCTCTACAGTGA 58.823 52.381 0.00 0.00 37.42 3.41
6643 8938 2.043252 AGAGCCTAACCACCTCTACAGT 59.957 50.000 0.00 0.00 34.37 3.55
6644 8939 2.428890 CAGAGCCTAACCACCTCTACAG 59.571 54.545 0.00 0.00 34.37 2.74
6646 8941 1.757699 CCAGAGCCTAACCACCTCTAC 59.242 57.143 0.00 0.00 34.37 2.59
6647 8942 1.361543 ACCAGAGCCTAACCACCTCTA 59.638 52.381 0.00 0.00 34.37 2.43
6648 8943 0.117340 ACCAGAGCCTAACCACCTCT 59.883 55.000 0.00 0.00 36.43 3.69
6649 8944 0.984995 AACCAGAGCCTAACCACCTC 59.015 55.000 0.00 0.00 0.00 3.85
6651 8946 2.168728 CTCTAACCAGAGCCTAACCACC 59.831 54.545 0.00 0.00 41.91 4.61
6652 8947 3.528597 CTCTAACCAGAGCCTAACCAC 57.471 52.381 0.00 0.00 41.91 4.16
6730 9575 3.358118 CCCGTGTATATGTGGGGTTTTT 58.642 45.455 0.00 0.00 38.03 1.94
6737 9582 3.762407 TCAATCCCCGTGTATATGTGG 57.238 47.619 0.00 0.00 0.00 4.17
6746 9591 2.146342 GTATGCAGATCAATCCCCGTG 58.854 52.381 0.00 0.00 0.00 4.94
6749 9594 3.825328 ACAAGTATGCAGATCAATCCCC 58.175 45.455 0.00 0.00 0.00 4.81
6751 9596 9.807649 AAATTTTACAAGTATGCAGATCAATCC 57.192 29.630 0.00 0.00 0.00 3.01
6775 9623 9.231297 CCTACTTGAATCCACTTAGAAATGAAA 57.769 33.333 0.00 0.00 0.00 2.69
6776 9624 7.336931 GCCTACTTGAATCCACTTAGAAATGAA 59.663 37.037 0.00 0.00 0.00 2.57
6777 9625 6.823689 GCCTACTTGAATCCACTTAGAAATGA 59.176 38.462 0.00 0.00 0.00 2.57
6778 9626 6.825721 AGCCTACTTGAATCCACTTAGAAATG 59.174 38.462 0.00 0.00 0.00 2.32
6779 9627 6.963322 AGCCTACTTGAATCCACTTAGAAAT 58.037 36.000 0.00 0.00 0.00 2.17
6780 9628 6.374417 AGCCTACTTGAATCCACTTAGAAA 57.626 37.500 0.00 0.00 0.00 2.52
6781 9629 7.676683 ATAGCCTACTTGAATCCACTTAGAA 57.323 36.000 0.00 0.00 0.00 2.10
6786 9634 8.958060 TCTATAATAGCCTACTTGAATCCACT 57.042 34.615 0.00 0.00 0.00 4.00
6826 9680 9.473007 TGTAAAATTTCATGAGTGGATTATGGA 57.527 29.630 0.00 0.00 0.00 3.41
6830 9684 7.395772 TGCCTGTAAAATTTCATGAGTGGATTA 59.604 33.333 0.00 0.00 0.00 1.75
6833 9687 5.048083 GTGCCTGTAAAATTTCATGAGTGGA 60.048 40.000 0.00 0.00 0.00 4.02
6834 9688 5.163513 GTGCCTGTAAAATTTCATGAGTGG 58.836 41.667 0.00 0.00 0.00 4.00
6835 9689 5.771469 TGTGCCTGTAAAATTTCATGAGTG 58.229 37.500 0.00 0.00 0.00 3.51
6836 9690 6.594788 ATGTGCCTGTAAAATTTCATGAGT 57.405 33.333 0.00 0.00 0.00 3.41
6837 9691 7.765307 AGTATGTGCCTGTAAAATTTCATGAG 58.235 34.615 0.00 0.00 0.00 2.90
6838 9692 7.148086 GGAGTATGTGCCTGTAAAATTTCATGA 60.148 37.037 0.00 0.00 0.00 3.07
6839 9693 6.974622 GGAGTATGTGCCTGTAAAATTTCATG 59.025 38.462 0.00 0.00 0.00 3.07
6840 9694 6.891908 AGGAGTATGTGCCTGTAAAATTTCAT 59.108 34.615 0.00 0.00 32.06 2.57
6929 9813 4.582701 TTTACTGCATTTCACAACCTGG 57.417 40.909 0.00 0.00 0.00 4.45
6931 9815 6.403866 TGAATTTACTGCATTTCACAACCT 57.596 33.333 0.00 0.00 0.00 3.50
6932 9816 6.073819 GGTTGAATTTACTGCATTTCACAACC 60.074 38.462 16.30 16.30 43.68 3.77
6933 9817 6.701400 AGGTTGAATTTACTGCATTTCACAAC 59.299 34.615 0.00 0.00 34.97 3.32
6935 9819 6.040278 TCAGGTTGAATTTACTGCATTTCACA 59.960 34.615 0.00 0.00 0.00 3.58
6946 9830 6.127479 TGGTTATGGCATCAGGTTGAATTTAC 60.127 38.462 1.65 0.00 0.00 2.01
6951 9835 3.355378 CTGGTTATGGCATCAGGTTGAA 58.645 45.455 1.65 0.00 0.00 2.69
6952 9836 2.945440 GCTGGTTATGGCATCAGGTTGA 60.945 50.000 1.65 0.00 0.00 3.18
6953 9837 1.406539 GCTGGTTATGGCATCAGGTTG 59.593 52.381 1.65 0.00 0.00 3.77
6954 9838 1.005805 TGCTGGTTATGGCATCAGGTT 59.994 47.619 1.65 0.00 33.23 3.50
6956 9840 1.027357 GTGCTGGTTATGGCATCAGG 58.973 55.000 1.65 0.00 40.66 3.86
6957 9841 1.753930 TGTGCTGGTTATGGCATCAG 58.246 50.000 1.65 6.79 40.66 2.90
6958 9842 2.440517 ATGTGCTGGTTATGGCATCA 57.559 45.000 1.65 0.00 40.66 3.07
6959 9843 3.743521 TCTATGTGCTGGTTATGGCATC 58.256 45.455 1.65 0.00 40.66 3.91
6960 9844 3.862877 TCTATGTGCTGGTTATGGCAT 57.137 42.857 4.88 4.88 40.66 4.40
6961 9845 3.643199 TTCTATGTGCTGGTTATGGCA 57.357 42.857 0.00 0.00 36.01 4.92
6970 9901 3.265791 GTCCCTGACTTTCTATGTGCTG 58.734 50.000 0.00 0.00 0.00 4.41
6977 9908 3.830178 TCATGTTCGTCCCTGACTTTCTA 59.170 43.478 0.00 0.00 0.00 2.10
6978 9909 2.632996 TCATGTTCGTCCCTGACTTTCT 59.367 45.455 0.00 0.00 0.00 2.52
6979 9910 3.040147 TCATGTTCGTCCCTGACTTTC 57.960 47.619 0.00 0.00 0.00 2.62
6980 9911 3.485463 TTCATGTTCGTCCCTGACTTT 57.515 42.857 0.00 0.00 0.00 2.66
6987 9918 6.106673 TCTAGAAGAAATTCATGTTCGTCCC 58.893 40.000 6.79 0.00 35.03 4.46
7009 9940 9.295825 TGGTGTCATCTGTTTTGTTTATATTCT 57.704 29.630 0.00 0.00 0.00 2.40
7022 9953 4.728772 TGGAGAAAATGGTGTCATCTGTT 58.271 39.130 0.00 0.00 32.24 3.16
7031 9962 4.378774 TGCAATTGTTGGAGAAAATGGTG 58.621 39.130 7.40 0.00 0.00 4.17
7032 9963 4.686191 TGCAATTGTTGGAGAAAATGGT 57.314 36.364 7.40 0.00 0.00 3.55
7033 9964 6.260493 TCTTTTGCAATTGTTGGAGAAAATGG 59.740 34.615 7.40 0.00 30.85 3.16
7034 9965 7.249186 TCTTTTGCAATTGTTGGAGAAAATG 57.751 32.000 7.40 1.17 30.85 2.32
7035 9966 7.012610 CCTTCTTTTGCAATTGTTGGAGAAAAT 59.987 33.333 7.40 0.00 30.85 1.82
7038 9969 5.358922 CCTTCTTTTGCAATTGTTGGAGAA 58.641 37.500 7.40 10.72 30.85 2.87
7045 9978 4.990426 GTGTATGCCTTCTTTTGCAATTGT 59.010 37.500 7.40 0.00 41.50 2.71
7051 9984 4.708726 AGATGTGTATGCCTTCTTTTGC 57.291 40.909 0.00 0.00 0.00 3.68
7058 9991 2.843730 TGGGTGTAGATGTGTATGCCTT 59.156 45.455 0.00 0.00 0.00 4.35
7068 10001 2.505982 CCGCCCTGGGTGTAGATG 59.494 66.667 23.99 5.35 0.00 2.90
7069 10002 3.480133 GCCGCCCTGGGTGTAGAT 61.480 66.667 23.99 0.00 38.63 1.98
7071 10004 4.473520 CTGCCGCCCTGGGTGTAG 62.474 72.222 23.99 17.32 38.63 2.74
7072 10005 3.908904 TACTGCCGCCCTGGGTGTA 62.909 63.158 23.99 12.18 38.63 2.90
7077 10010 3.704231 AATGCTACTGCCGCCCTGG 62.704 63.158 0.00 0.00 42.50 4.45
7078 10011 2.124570 AATGCTACTGCCGCCCTG 60.125 61.111 0.00 0.00 38.71 4.45
7079 10012 2.190578 GAATGCTACTGCCGCCCT 59.809 61.111 0.00 0.00 38.71 5.19
7080 10013 1.889573 GAGAATGCTACTGCCGCCC 60.890 63.158 0.00 0.00 38.71 6.13
7081 10014 2.240500 CGAGAATGCTACTGCCGCC 61.241 63.158 0.00 0.00 38.71 6.13
7082 10015 0.248907 TACGAGAATGCTACTGCCGC 60.249 55.000 0.00 0.00 38.71 6.53
7083 10016 2.054363 CATACGAGAATGCTACTGCCG 58.946 52.381 0.00 0.00 38.71 5.69
7089 10022 8.581578 TGGTGTTTATATCATACGAGAATGCTA 58.418 33.333 0.00 0.00 0.00 3.49
7103 10036 8.674607 CCAGGTTTTCTAGTTGGTGTTTATATC 58.325 37.037 0.00 0.00 0.00 1.63
7113 10046 3.425162 AGCTCCAGGTTTTCTAGTTGG 57.575 47.619 0.00 0.00 0.00 3.77
7114 10047 4.821805 TGAAAGCTCCAGGTTTTCTAGTTG 59.178 41.667 5.28 0.00 44.63 3.16
7118 10051 6.976934 AAATTGAAAGCTCCAGGTTTTCTA 57.023 33.333 5.28 7.46 44.63 2.10
7119 10052 5.876651 AAATTGAAAGCTCCAGGTTTTCT 57.123 34.783 5.28 0.00 44.63 2.52
7120 10053 6.983890 TGTAAAATTGAAAGCTCCAGGTTTTC 59.016 34.615 5.28 0.03 44.63 2.29
7137 10070 2.042569 GAGGGACCAGGGGTGTAAAATT 59.957 50.000 0.00 0.00 35.25 1.82
7138 10071 1.639108 GAGGGACCAGGGGTGTAAAAT 59.361 52.381 0.00 0.00 35.25 1.82
7139 10072 1.069775 GAGGGACCAGGGGTGTAAAA 58.930 55.000 0.00 0.00 35.25 1.52
7140 10073 0.195096 AGAGGGACCAGGGGTGTAAA 59.805 55.000 0.00 0.00 35.25 2.01
7141 10074 1.007963 CTAGAGGGACCAGGGGTGTAA 59.992 57.143 0.00 0.00 35.25 2.41
7143 10076 1.392534 CTAGAGGGACCAGGGGTGT 59.607 63.158 0.00 0.00 35.25 4.16
7146 10079 1.133419 GTCTACTAGAGGGACCAGGGG 60.133 61.905 0.00 0.00 0.00 4.79
7147 10080 1.854280 AGTCTACTAGAGGGACCAGGG 59.146 57.143 0.00 0.00 0.00 4.45
7150 10083 2.778850 GGAGAGTCTACTAGAGGGACCA 59.221 54.545 0.00 0.00 0.00 4.02
7151 10084 3.050835 AGGAGAGTCTACTAGAGGGACC 58.949 54.545 1.88 0.00 0.00 4.46
7152 10085 3.971971 AGAGGAGAGTCTACTAGAGGGAC 59.028 52.174 4.37 1.65 0.00 4.46
7153 10086 4.289837 AGAGGAGAGTCTACTAGAGGGA 57.710 50.000 4.37 0.00 0.00 4.20
7154 10087 4.714632 CAAGAGGAGAGTCTACTAGAGGG 58.285 52.174 4.37 0.00 0.00 4.30
7155 10088 4.134563 GCAAGAGGAGAGTCTACTAGAGG 58.865 52.174 4.37 0.00 0.00 3.69
7156 10089 3.807622 CGCAAGAGGAGAGTCTACTAGAG 59.192 52.174 4.37 0.00 43.02 2.43
7179 10142 1.230324 GCTCGACCAGCTTCAAAGTT 58.770 50.000 0.00 0.00 45.83 2.66


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.