Multiple sequence alignment - TraesCS5B01G531900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G531900 chr5B 100.000 3857 0 0 1 3857 689849160 689853016 0.000000e+00 7123.0
1 TraesCS5B01G531900 chr7B 99.397 995 6 0 1375 2369 66360003 66360997 0.000000e+00 1805.0
2 TraesCS5B01G531900 chr7B 99.196 995 8 0 1375 2369 640115688 640116682 0.000000e+00 1794.0
3 TraesCS5B01G531900 chr7B 96.296 135 3 2 1 135 530416824 530416692 1.800000e-53 220.0
4 TraesCS5B01G531900 chr7B 94.366 71 4 0 1181 1251 532502990 532502920 4.070000e-20 110.0
5 TraesCS5B01G531900 chr5A 99.397 995 6 0 1375 2369 50234776 50235770 0.000000e+00 1805.0
6 TraesCS5B01G531900 chr5A 93.056 144 8 2 1 144 531197143 531197002 3.900000e-50 209.0
7 TraesCS5B01G531900 chr5A 80.565 283 23 20 3061 3334 20365424 20365165 5.090000e-44 189.0
8 TraesCS5B01G531900 chr5A 79.856 278 35 13 3061 3334 554380948 554380688 2.370000e-42 183.0
9 TraesCS5B01G531900 chr5A 79.496 278 36 13 3061 3334 554436345 554436085 1.100000e-40 178.0
10 TraesCS5B01G531900 chr3B 99.397 995 6 0 1375 2369 600494121 600495115 0.000000e+00 1805.0
11 TraesCS5B01G531900 chr3B 74.534 322 57 18 440 748 402721679 402721988 2.430000e-22 117.0
12 TraesCS5B01G531900 chr2B 99.296 995 7 0 1375 2369 360997345 360998339 0.000000e+00 1799.0
13 TraesCS5B01G531900 chr2B 82.464 211 18 12 3254 3459 735770215 735770019 2.380000e-37 167.0
14 TraesCS5B01G531900 chrUn 99.196 995 8 0 1375 2369 285480062 285481056 0.000000e+00 1794.0
15 TraesCS5B01G531900 chrUn 82.464 211 17 12 3254 3459 343937151 343937346 2.380000e-37 167.0
16 TraesCS5B01G531900 chrUn 82.297 209 21 12 3254 3459 462333690 462333885 2.380000e-37 167.0
17 TraesCS5B01G531900 chrUn 81.818 209 15 11 3254 3459 1354105 1353917 1.860000e-33 154.0
18 TraesCS5B01G531900 chrUn 81.818 209 15 11 3254 3459 316949938 316950126 1.860000e-33 154.0
19 TraesCS5B01G531900 chrUn 81.818 209 15 11 3254 3459 341804940 341805128 1.860000e-33 154.0
20 TraesCS5B01G531900 chr4B 99.196 995 8 0 1375 2369 92320507 92321501 0.000000e+00 1794.0
21 TraesCS5B01G531900 chr4B 84.772 197 30 0 2543 2739 628418822 628418626 8.450000e-47 198.0
22 TraesCS5B01G531900 chr1B 99.196 995 8 0 1375 2369 559853322 559852328 0.000000e+00 1794.0
23 TraesCS5B01G531900 chr1B 82.464 211 17 12 3254 3459 238493519 238493324 2.380000e-37 167.0
24 TraesCS5B01G531900 chr1B 82.464 211 17 12 3254 3459 654553512 654553317 2.380000e-37 167.0
25 TraesCS5B01G531900 chr6B 99.095 995 5 1 1375 2369 496838676 496839666 0.000000e+00 1784.0
26 TraesCS5B01G531900 chr6B 98.413 126 2 0 1 126 51405049 51405174 5.020000e-54 222.0
27 TraesCS5B01G531900 chr6B 90.260 154 15 0 2586 2739 121029 121182 6.530000e-48 202.0
28 TraesCS5B01G531900 chr5D 87.201 836 64 29 823 1630 546648890 546649710 0.000000e+00 911.0
29 TraesCS5B01G531900 chr5D 83.256 860 78 18 1654 2472 546649891 546650725 0.000000e+00 730.0
30 TraesCS5B01G531900 chr5D 86.486 481 37 16 2547 3004 546650723 546651198 1.600000e-138 503.0
31 TraesCS5B01G531900 chr5D 86.341 410 29 15 3450 3857 546651826 546652210 4.610000e-114 422.0
32 TraesCS5B01G531900 chr5D 96.970 132 2 2 1 130 54864867 54864736 1.800000e-53 220.0
33 TraesCS5B01G531900 chr4A 87.825 616 26 16 811 1406 622290492 622289906 0.000000e+00 676.0
34 TraesCS5B01G531900 chr4A 89.938 487 34 11 3378 3857 622287335 622286857 7.080000e-172 614.0
35 TraesCS5B01G531900 chr4A 90.000 250 21 3 115 362 622291030 622290783 1.730000e-83 320.0
36 TraesCS5B01G531900 chr4A 79.783 277 36 12 3061 3334 197481228 197480969 2.370000e-42 183.0
37 TraesCS5B01G531900 chr6A 78.729 409 51 23 3063 3464 578455058 578454679 1.380000e-59 241.0
38 TraesCS5B01G531900 chr6A 100.000 114 0 0 1 114 28561252 28561365 1.090000e-50 211.0
39 TraesCS5B01G531900 chr6A 79.422 277 36 13 3061 3334 132972282 132972540 3.960000e-40 176.0
40 TraesCS5B01G531900 chr6A 81.604 212 18 13 3254 3459 589803471 589803667 5.160000e-34 156.0
41 TraesCS5B01G531900 chr2D 98.413 126 2 0 1 126 128995134 128995009 5.020000e-54 222.0
42 TraesCS5B01G531900 chr2D 96.296 135 4 1 1 134 223524125 223523991 1.800000e-53 220.0
43 TraesCS5B01G531900 chr2D 93.662 142 8 1 1 142 240045825 240045685 1.090000e-50 211.0
44 TraesCS5B01G531900 chr7A 96.970 132 2 2 1 130 510572062 510571931 1.800000e-53 220.0
45 TraesCS5B01G531900 chr7A 84.772 197 30 0 2543 2739 688261763 688261567 8.450000e-47 198.0
46 TraesCS5B01G531900 chr7A 87.805 82 3 4 3254 3334 629872897 629872822 5.310000e-14 89.8
47 TraesCS5B01G531900 chr7A 100.000 34 0 0 3061 3094 72962005 72961972 3.220000e-06 63.9
48 TraesCS5B01G531900 chr2A 85.279 197 29 0 2543 2739 775542097 775542293 1.820000e-48 204.0
49 TraesCS5B01G531900 chr3D 83.889 180 20 6 595 767 502119739 502119916 3.080000e-36 163.0
50 TraesCS5B01G531900 chr3D 92.958 71 5 0 1179 1249 181944487 181944417 1.900000e-18 104.0
51 TraesCS5B01G531900 chr3A 83.708 178 24 4 595 767 641469145 641469322 3.080000e-36 163.0
52 TraesCS5B01G531900 chr1A 93.269 104 7 0 3016 3119 349105975 349105872 1.860000e-33 154.0
53 TraesCS5B01G531900 chr4D 95.890 73 3 0 1179 1251 17109715 17109643 6.770000e-23 119.0
54 TraesCS5B01G531900 chr7D 93.421 76 4 1 1176 1251 48000296 48000370 1.130000e-20 111.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G531900 chr5B 689849160 689853016 3856 False 7123.000000 7123 100.000000 1 3857 1 chr5B.!!$F1 3856
1 TraesCS5B01G531900 chr7B 66360003 66360997 994 False 1805.000000 1805 99.397000 1375 2369 1 chr7B.!!$F1 994
2 TraesCS5B01G531900 chr7B 640115688 640116682 994 False 1794.000000 1794 99.196000 1375 2369 1 chr7B.!!$F2 994
3 TraesCS5B01G531900 chr5A 50234776 50235770 994 False 1805.000000 1805 99.397000 1375 2369 1 chr5A.!!$F1 994
4 TraesCS5B01G531900 chr3B 600494121 600495115 994 False 1805.000000 1805 99.397000 1375 2369 1 chr3B.!!$F2 994
5 TraesCS5B01G531900 chr2B 360997345 360998339 994 False 1799.000000 1799 99.296000 1375 2369 1 chr2B.!!$F1 994
6 TraesCS5B01G531900 chrUn 285480062 285481056 994 False 1794.000000 1794 99.196000 1375 2369 1 chrUn.!!$F1 994
7 TraesCS5B01G531900 chr4B 92320507 92321501 994 False 1794.000000 1794 99.196000 1375 2369 1 chr4B.!!$F1 994
8 TraesCS5B01G531900 chr1B 559852328 559853322 994 True 1794.000000 1794 99.196000 1375 2369 1 chr1B.!!$R2 994
9 TraesCS5B01G531900 chr6B 496838676 496839666 990 False 1784.000000 1784 99.095000 1375 2369 1 chr6B.!!$F3 994
10 TraesCS5B01G531900 chr5D 546648890 546652210 3320 False 641.500000 911 85.821000 823 3857 4 chr5D.!!$F1 3034
11 TraesCS5B01G531900 chr4A 622286857 622291030 4173 True 536.666667 676 89.254333 115 3857 3 chr4A.!!$R2 3742

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
763 768 0.035152 ATCTGCGGCATTTGACTCCA 60.035 50.0 1.75 0.0 0.00 3.86 F
766 771 0.322366 TGCGGCATTTGACTCCATCA 60.322 50.0 0.00 0.0 34.65 3.07 F
2512 2830 0.035598 TTCGCTGGGATTCGGAAACA 59.964 50.0 0.00 0.0 0.00 2.83 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2493 2811 0.035598 TGTTTCCGAATCCCAGCGAA 59.964 50.0 0.00 0.0 0.00 4.70 R
2530 2848 0.110778 GATTCGATGCGATGCTGCTG 60.111 55.0 0.00 0.0 35.23 4.41 R
3435 4590 0.038526 TTTCCTCCGACTTGTCGAGC 60.039 55.0 22.54 0.0 34.64 5.03 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 7.925043 ACACATGTATTATGTTTCCGGTTAA 57.075 32.000 0.00 0.00 0.00 2.01
25 26 8.514330 ACACATGTATTATGTTTCCGGTTAAT 57.486 30.769 0.00 1.95 0.00 1.40
26 27 9.616156 ACACATGTATTATGTTTCCGGTTAATA 57.384 29.630 0.00 0.00 0.00 0.98
27 28 9.872757 CACATGTATTATGTTTCCGGTTAATAC 57.127 33.333 0.00 12.47 37.73 1.89
28 29 9.616156 ACATGTATTATGTTTCCGGTTAATACA 57.384 29.630 22.83 22.83 44.85 2.29
36 37 7.311364 TGTTTCCGGTTAATACAATTCTAGC 57.689 36.000 0.00 0.00 0.00 3.42
37 38 6.879993 TGTTTCCGGTTAATACAATTCTAGCA 59.120 34.615 0.00 0.00 0.00 3.49
38 39 7.554835 TGTTTCCGGTTAATACAATTCTAGCAT 59.445 33.333 0.00 0.00 0.00 3.79
39 40 7.490962 TTCCGGTTAATACAATTCTAGCATG 57.509 36.000 0.00 0.00 0.00 4.06
40 41 6.822442 TCCGGTTAATACAATTCTAGCATGA 58.178 36.000 0.00 0.00 0.00 3.07
41 42 7.276658 TCCGGTTAATACAATTCTAGCATGAA 58.723 34.615 0.00 0.00 0.00 2.57
42 43 7.936847 TCCGGTTAATACAATTCTAGCATGAAT 59.063 33.333 0.00 0.00 38.19 2.57
43 44 9.214957 CCGGTTAATACAATTCTAGCATGAATA 57.785 33.333 0.00 0.00 35.82 1.75
101 102 8.637196 AATAACTTTATTATTGCCTCTAGGGC 57.363 34.615 13.60 13.60 44.71 5.19
113 114 4.982241 CCTCTAGGGCATATTTCCTTCA 57.018 45.455 0.00 0.00 34.75 3.02
124 125 5.048852 GCATATTTCCTTCAGATGCCTCTTC 60.049 44.000 0.00 0.00 37.52 2.87
130 131 3.303938 CTTCAGATGCCTCTTCCCTCTA 58.696 50.000 0.00 0.00 0.00 2.43
133 134 3.116977 TCAGATGCCTCTTCCCTCTATCA 60.117 47.826 0.00 0.00 0.00 2.15
152 153 7.275183 TCTATCAGGTAGGAACAATCACAATG 58.725 38.462 0.00 0.00 0.00 2.82
173 174 6.780706 ATGGTGTTGTAACTTAGAACTTCG 57.219 37.500 9.54 0.00 33.52 3.79
246 247 2.349886 CGAGACAATTTCTGCACTAGGC 59.650 50.000 0.00 0.00 45.13 3.93
258 259 3.662247 GCACTAGGCAATATCCGTAGT 57.338 47.619 0.00 3.99 43.97 2.73
259 260 3.318017 GCACTAGGCAATATCCGTAGTG 58.682 50.000 20.65 20.65 43.97 2.74
322 325 8.894768 AGTGAAAAGTATTGATAGTATCCTGC 57.105 34.615 7.69 0.00 0.00 4.85
331 334 0.554305 TAGTATCCTGCCGTCTCCCA 59.446 55.000 0.00 0.00 0.00 4.37
349 352 3.161450 GGCGGATGGGCTAGGTCA 61.161 66.667 0.00 0.00 38.40 4.02
362 365 3.658422 GGTCAAGGACCCCACCCC 61.658 72.222 4.00 0.00 46.19 4.95
363 366 2.856988 GTCAAGGACCCCACCCCA 60.857 66.667 0.00 0.00 0.00 4.96
364 367 2.856988 TCAAGGACCCCACCCCAC 60.857 66.667 0.00 0.00 0.00 4.61
365 368 3.979497 CAAGGACCCCACCCCACC 61.979 72.222 0.00 0.00 0.00 4.61
400 403 2.765699 CCCCACCCCACAAGATAATTTG 59.234 50.000 0.00 0.00 0.00 2.32
401 404 3.440127 CCCACCCCACAAGATAATTTGT 58.560 45.455 0.00 0.00 41.77 2.83
408 411 5.314923 CCACAAGATAATTTGTCAGTGGG 57.685 43.478 20.35 9.57 39.17 4.61
421 424 1.153369 AGTGGGCCATGATTCGTCG 60.153 57.895 10.70 0.00 0.00 5.12
425 428 2.203070 GCCATGATTCGTCGGGCT 60.203 61.111 0.00 0.00 41.39 5.19
444 447 4.146071 GCTTAGAAGCGCCAAAGATGGG 62.146 54.545 2.29 0.00 43.90 4.00
458 461 5.126061 CCAAAGATGGGATGTTTTCGAAGAT 59.874 40.000 0.00 0.00 43.51 2.40
481 484 4.967084 TGGCACTTACTCCAAGACTTAA 57.033 40.909 0.00 0.00 37.71 1.85
486 489 5.408909 GCACTTACTCCAAGACTTAAAGGTC 59.591 44.000 0.00 0.00 37.71 3.85
508 511 0.251916 CTGCACCACGATTCCCCTAA 59.748 55.000 0.00 0.00 0.00 2.69
509 512 0.693622 TGCACCACGATTCCCCTAAA 59.306 50.000 0.00 0.00 0.00 1.85
511 514 2.506231 TGCACCACGATTCCCCTAAATA 59.494 45.455 0.00 0.00 0.00 1.40
514 517 5.163184 TGCACCACGATTCCCCTAAATATAA 60.163 40.000 0.00 0.00 0.00 0.98
515 518 5.180680 GCACCACGATTCCCCTAAATATAAC 59.819 44.000 0.00 0.00 0.00 1.89
517 520 4.933400 CCACGATTCCCCTAAATATAACCG 59.067 45.833 0.00 0.00 0.00 4.44
518 521 5.279607 CCACGATTCCCCTAAATATAACCGA 60.280 44.000 0.00 0.00 0.00 4.69
519 522 5.636543 CACGATTCCCCTAAATATAACCGAC 59.363 44.000 0.00 0.00 0.00 4.79
520 523 5.305128 ACGATTCCCCTAAATATAACCGACA 59.695 40.000 0.00 0.00 0.00 4.35
523 526 8.202137 CGATTCCCCTAAATATAACCGACATAT 58.798 37.037 0.00 0.00 0.00 1.78
524 527 9.326413 GATTCCCCTAAATATAACCGACATATG 57.674 37.037 0.00 0.00 0.00 1.78
525 528 7.801893 TCCCCTAAATATAACCGACATATGT 57.198 36.000 8.43 8.43 0.00 2.29
526 529 8.898303 TCCCCTAAATATAACCGACATATGTA 57.102 34.615 8.71 0.00 0.00 2.29
527 530 9.496710 TCCCCTAAATATAACCGACATATGTAT 57.503 33.333 8.71 0.62 0.00 2.29
540 543 5.220989 CGACATATGTATACCCCGGTATCTG 60.221 48.000 8.71 4.78 41.12 2.90
542 545 6.734532 ACATATGTATACCCCGGTATCTGTA 58.265 40.000 6.56 2.91 41.12 2.74
571 574 1.511768 GGTGAGGCCTGTAGACGAC 59.488 63.158 12.00 0.00 0.00 4.34
594 597 3.243670 ACCTGATGCACACATAGATCTCG 60.244 47.826 0.00 0.00 36.35 4.04
614 617 2.719556 CGCGGTAGATCAATCTGTAACG 59.280 50.000 0.00 0.00 37.76 3.18
616 619 4.553351 CGCGGTAGATCAATCTGTAACGTA 60.553 45.833 0.00 0.00 37.76 3.57
621 624 7.956403 CGGTAGATCAATCTGTAACGTATACTC 59.044 40.741 0.56 0.00 37.76 2.59
645 648 5.095490 CCTCGAAATCAATACAACCAAAGC 58.905 41.667 0.00 0.00 0.00 3.51
648 651 5.471797 TCGAAATCAATACAACCAAAGCAGA 59.528 36.000 0.00 0.00 0.00 4.26
649 652 5.569059 CGAAATCAATACAACCAAAGCAGAC 59.431 40.000 0.00 0.00 0.00 3.51
650 653 4.685169 ATCAATACAACCAAAGCAGACG 57.315 40.909 0.00 0.00 0.00 4.18
651 654 3.472652 TCAATACAACCAAAGCAGACGT 58.527 40.909 0.00 0.00 0.00 4.34
652 655 4.633175 TCAATACAACCAAAGCAGACGTA 58.367 39.130 0.00 0.00 0.00 3.57
653 656 4.688879 TCAATACAACCAAAGCAGACGTAG 59.311 41.667 0.00 0.00 0.00 3.51
654 657 2.902705 ACAACCAAAGCAGACGTAGA 57.097 45.000 0.00 0.00 0.00 2.59
662 667 6.505272 ACCAAAGCAGACGTAGAGTATTATC 58.495 40.000 0.00 0.00 0.00 1.75
668 673 6.993308 AGCAGACGTAGAGTATTATCTCTTCA 59.007 38.462 1.61 0.00 43.46 3.02
669 674 7.499563 AGCAGACGTAGAGTATTATCTCTTCAA 59.500 37.037 1.61 0.00 43.46 2.69
670 675 7.588488 GCAGACGTAGAGTATTATCTCTTCAAC 59.412 40.741 1.61 0.00 43.46 3.18
672 677 9.344772 AGACGTAGAGTATTATCTCTTCAACAT 57.655 33.333 1.61 0.00 43.46 2.71
679 684 2.918712 ATCTCTTCAACATAGCCCGG 57.081 50.000 0.00 0.00 0.00 5.73
694 699 0.254747 CCCGGAGCTGGGTAAAATCA 59.745 55.000 0.73 0.00 44.76 2.57
695 700 1.133792 CCCGGAGCTGGGTAAAATCAT 60.134 52.381 0.73 0.00 44.76 2.45
696 701 1.949525 CCGGAGCTGGGTAAAATCATG 59.050 52.381 0.00 0.00 0.00 3.07
697 702 2.643551 CGGAGCTGGGTAAAATCATGT 58.356 47.619 0.00 0.00 0.00 3.21
698 703 2.355756 CGGAGCTGGGTAAAATCATGTG 59.644 50.000 0.00 0.00 0.00 3.21
699 704 2.099756 GGAGCTGGGTAAAATCATGTGC 59.900 50.000 0.00 0.00 0.00 4.57
700 705 2.099756 GAGCTGGGTAAAATCATGTGCC 59.900 50.000 0.00 0.00 0.00 5.01
701 706 2.102578 GCTGGGTAAAATCATGTGCCT 58.897 47.619 0.00 0.00 0.00 4.75
702 707 3.053693 AGCTGGGTAAAATCATGTGCCTA 60.054 43.478 0.00 0.00 0.00 3.93
703 708 3.891366 GCTGGGTAAAATCATGTGCCTAT 59.109 43.478 0.00 0.00 0.00 2.57
704 709 4.261741 GCTGGGTAAAATCATGTGCCTATG 60.262 45.833 0.00 0.00 0.00 2.23
705 710 4.865905 TGGGTAAAATCATGTGCCTATGT 58.134 39.130 0.00 0.00 0.00 2.29
706 711 5.268387 TGGGTAAAATCATGTGCCTATGTT 58.732 37.500 0.00 0.00 0.00 2.71
707 712 6.427441 TGGGTAAAATCATGTGCCTATGTTA 58.573 36.000 0.00 0.00 0.00 2.41
708 713 6.320164 TGGGTAAAATCATGTGCCTATGTTAC 59.680 38.462 0.00 0.00 0.00 2.50
709 714 6.238925 GGGTAAAATCATGTGCCTATGTTACC 60.239 42.308 12.19 12.19 36.94 2.85
710 715 6.320164 GGTAAAATCATGTGCCTATGTTACCA 59.680 38.462 14.41 0.00 37.26 3.25
711 716 7.014230 GGTAAAATCATGTGCCTATGTTACCAT 59.986 37.037 14.41 0.00 37.26 3.55
712 717 6.639632 AAATCATGTGCCTATGTTACCATC 57.360 37.500 0.00 0.00 32.29 3.51
713 718 3.727726 TCATGTGCCTATGTTACCATCG 58.272 45.455 0.00 0.00 32.29 3.84
714 719 1.948104 TGTGCCTATGTTACCATCGC 58.052 50.000 0.00 0.00 32.29 4.58
715 720 1.208293 TGTGCCTATGTTACCATCGCA 59.792 47.619 0.00 0.00 35.34 5.10
716 721 1.597663 GTGCCTATGTTACCATCGCAC 59.402 52.381 8.86 8.86 43.94 5.34
717 722 1.226746 GCCTATGTTACCATCGCACC 58.773 55.000 0.00 0.00 32.29 5.01
718 723 1.474320 GCCTATGTTACCATCGCACCA 60.474 52.381 0.00 0.00 32.29 4.17
719 724 2.912771 CCTATGTTACCATCGCACCAA 58.087 47.619 0.00 0.00 32.29 3.67
720 725 2.872245 CCTATGTTACCATCGCACCAAG 59.128 50.000 0.00 0.00 32.29 3.61
721 726 1.750193 ATGTTACCATCGCACCAAGG 58.250 50.000 0.00 0.00 0.00 3.61
722 727 0.958382 TGTTACCATCGCACCAAGGC 60.958 55.000 0.00 0.00 0.00 4.35
723 728 0.676782 GTTACCATCGCACCAAGGCT 60.677 55.000 0.00 0.00 0.00 4.58
724 729 0.906066 TTACCATCGCACCAAGGCTA 59.094 50.000 0.00 0.00 0.00 3.93
725 730 0.177141 TACCATCGCACCAAGGCTAC 59.823 55.000 0.00 0.00 0.00 3.58
726 731 1.819632 CCATCGCACCAAGGCTACC 60.820 63.158 0.00 0.00 0.00 3.18
727 732 1.078497 CATCGCACCAAGGCTACCA 60.078 57.895 0.00 0.00 0.00 3.25
728 733 1.091771 CATCGCACCAAGGCTACCAG 61.092 60.000 0.00 0.00 0.00 4.00
729 734 1.264749 ATCGCACCAAGGCTACCAGA 61.265 55.000 0.00 0.00 0.00 3.86
730 735 1.448540 CGCACCAAGGCTACCAGAG 60.449 63.158 0.00 0.00 0.00 3.35
731 736 1.078143 GCACCAAGGCTACCAGAGG 60.078 63.158 0.00 0.00 0.00 3.69
732 737 1.553690 GCACCAAGGCTACCAGAGGA 61.554 60.000 0.00 0.00 0.00 3.71
733 738 0.250513 CACCAAGGCTACCAGAGGAC 59.749 60.000 0.00 0.00 0.00 3.85
734 739 0.910088 ACCAAGGCTACCAGAGGACC 60.910 60.000 0.00 0.00 0.00 4.46
735 740 1.627297 CCAAGGCTACCAGAGGACCC 61.627 65.000 0.00 0.00 0.00 4.46
736 741 1.307084 AAGGCTACCAGAGGACCCC 60.307 63.158 0.00 0.00 0.00 4.95
737 742 1.827492 AAGGCTACCAGAGGACCCCT 61.827 60.000 0.00 0.00 36.03 4.79
738 743 0.929734 AGGCTACCAGAGGACCCCTA 60.930 60.000 0.00 0.00 31.76 3.53
739 744 0.759812 GGCTACCAGAGGACCCCTAC 60.760 65.000 0.00 0.00 31.76 3.18
740 745 0.759812 GCTACCAGAGGACCCCTACC 60.760 65.000 0.00 0.00 31.76 3.18
741 746 0.467659 CTACCAGAGGACCCCTACCG 60.468 65.000 0.00 0.00 31.76 4.02
742 747 1.941403 TACCAGAGGACCCCTACCGG 61.941 65.000 0.00 0.00 31.76 5.28
752 757 4.301027 CCTACCGGGATCTGCGGC 62.301 72.222 6.32 0.00 37.23 6.53
753 758 3.536917 CTACCGGGATCTGCGGCA 61.537 66.667 6.32 1.29 0.00 5.69
754 759 2.842462 TACCGGGATCTGCGGCAT 60.842 61.111 6.32 0.00 0.00 4.40
755 760 2.383245 CTACCGGGATCTGCGGCATT 62.383 60.000 6.32 0.00 0.00 3.56
756 761 1.978455 TACCGGGATCTGCGGCATTT 61.978 55.000 6.32 0.00 0.00 2.32
757 762 2.717485 CGGGATCTGCGGCATTTG 59.283 61.111 1.75 0.00 0.00 2.32
758 763 1.819208 CGGGATCTGCGGCATTTGA 60.819 57.895 1.75 0.00 0.00 2.69
759 764 1.729881 GGGATCTGCGGCATTTGAC 59.270 57.895 1.75 0.00 0.00 3.18
760 765 0.749454 GGGATCTGCGGCATTTGACT 60.749 55.000 1.75 0.00 0.00 3.41
761 766 0.659957 GGATCTGCGGCATTTGACTC 59.340 55.000 1.75 0.00 0.00 3.36
762 767 0.659957 GATCTGCGGCATTTGACTCC 59.340 55.000 1.75 0.00 0.00 3.85
763 768 0.035152 ATCTGCGGCATTTGACTCCA 60.035 50.000 1.75 0.00 0.00 3.86
764 769 0.035152 TCTGCGGCATTTGACTCCAT 60.035 50.000 1.75 0.00 0.00 3.41
765 770 0.379669 CTGCGGCATTTGACTCCATC 59.620 55.000 1.75 0.00 0.00 3.51
766 771 0.322366 TGCGGCATTTGACTCCATCA 60.322 50.000 0.00 0.00 34.65 3.07
767 772 0.810648 GCGGCATTTGACTCCATCAA 59.189 50.000 0.00 0.00 45.92 2.57
778 783 6.605471 TTGACTCCATCAAGTATACTGTGT 57.395 37.500 6.06 0.52 42.62 3.72
779 784 7.712204 TTGACTCCATCAAGTATACTGTGTA 57.288 36.000 6.06 0.00 42.62 2.90
780 785 7.334844 TGACTCCATCAAGTATACTGTGTAG 57.665 40.000 6.06 5.38 33.02 2.74
781 786 7.116736 TGACTCCATCAAGTATACTGTGTAGA 58.883 38.462 6.06 0.97 33.02 2.59
782 787 7.614192 TGACTCCATCAAGTATACTGTGTAGAA 59.386 37.037 6.06 0.00 33.02 2.10
783 788 7.773149 ACTCCATCAAGTATACTGTGTAGAAC 58.227 38.462 6.06 0.00 0.00 3.01
784 789 7.396339 ACTCCATCAAGTATACTGTGTAGAACA 59.604 37.037 6.06 0.00 37.22 3.18
785 790 8.306313 TCCATCAAGTATACTGTGTAGAACAT 57.694 34.615 6.06 0.00 38.39 2.71
786 791 8.758829 TCCATCAAGTATACTGTGTAGAACATT 58.241 33.333 6.06 0.00 38.39 2.71
787 792 9.383519 CCATCAAGTATACTGTGTAGAACATTT 57.616 33.333 6.06 0.00 38.39 2.32
791 796 9.329913 CAAGTATACTGTGTAGAACATTTTTGC 57.670 33.333 6.06 0.00 38.39 3.68
792 797 8.615878 AGTATACTGTGTAGAACATTTTTGCA 57.384 30.769 4.10 0.00 38.39 4.08
793 798 9.062524 AGTATACTGTGTAGAACATTTTTGCAA 57.937 29.630 4.10 0.00 38.39 4.08
794 799 9.329913 GTATACTGTGTAGAACATTTTTGCAAG 57.670 33.333 0.00 0.00 38.39 4.01
795 800 6.449635 ACTGTGTAGAACATTTTTGCAAGA 57.550 33.333 0.00 0.00 38.39 3.02
796 801 6.862209 ACTGTGTAGAACATTTTTGCAAGAA 58.138 32.000 4.71 4.71 38.39 2.52
797 802 7.319646 ACTGTGTAGAACATTTTTGCAAGAAA 58.680 30.769 6.49 7.71 38.39 2.52
798 803 7.816995 ACTGTGTAGAACATTTTTGCAAGAAAA 59.183 29.630 6.49 2.56 38.39 2.29
799 804 8.539770 TGTGTAGAACATTTTTGCAAGAAAAA 57.460 26.923 6.49 1.80 32.36 1.94
814 819 2.551644 AAAAACATCGGGTCGCTCC 58.448 52.632 0.00 0.00 0.00 4.70
852 858 5.751028 TCGTTGTTCAAAATTCAAATGGGAC 59.249 36.000 0.00 0.00 0.00 4.46
968 984 0.396695 TATCCACGGGACTCCACTCC 60.397 60.000 0.00 0.00 32.98 3.85
975 991 2.997897 GACTCCACTCCCCGCACT 60.998 66.667 0.00 0.00 0.00 4.40
2083 2281 3.004315 ACACCGCTTGATCGAAACAATTT 59.996 39.130 8.44 0.00 0.00 1.82
2472 2790 4.036971 TGATTCGTCAAACCCGAACAAATT 59.963 37.500 0.00 0.00 45.89 1.82
2473 2791 3.612472 TCGTCAAACCCGAACAAATTC 57.388 42.857 0.00 0.00 0.00 2.17
2474 2792 2.943690 TCGTCAAACCCGAACAAATTCA 59.056 40.909 0.00 0.00 34.14 2.57
2475 2793 3.002862 TCGTCAAACCCGAACAAATTCAG 59.997 43.478 0.00 0.00 34.14 3.02
2476 2794 3.638484 GTCAAACCCGAACAAATTCAGG 58.362 45.455 0.00 0.00 38.25 3.86
2477 2795 3.316868 GTCAAACCCGAACAAATTCAGGA 59.683 43.478 0.00 0.00 36.09 3.86
2478 2796 3.568007 TCAAACCCGAACAAATTCAGGAG 59.432 43.478 0.00 0.00 36.09 3.69
2479 2797 1.534729 ACCCGAACAAATTCAGGAGC 58.465 50.000 0.00 0.00 36.09 4.70
2480 2798 1.202879 ACCCGAACAAATTCAGGAGCA 60.203 47.619 0.00 0.00 36.09 4.26
2481 2799 2.094675 CCCGAACAAATTCAGGAGCAT 58.905 47.619 0.00 0.00 34.66 3.79
2482 2800 2.159338 CCCGAACAAATTCAGGAGCATG 60.159 50.000 0.00 0.00 34.66 4.06
2483 2801 2.159338 CCGAACAAATTCAGGAGCATGG 60.159 50.000 0.00 0.00 34.14 3.66
2484 2802 2.159338 CGAACAAATTCAGGAGCATGGG 60.159 50.000 0.00 0.00 34.14 4.00
2485 2803 2.905415 ACAAATTCAGGAGCATGGGA 57.095 45.000 0.00 0.00 0.00 4.37
2486 2804 2.731572 ACAAATTCAGGAGCATGGGAG 58.268 47.619 0.00 0.00 0.00 4.30
2487 2805 2.042162 ACAAATTCAGGAGCATGGGAGT 59.958 45.455 0.00 0.00 0.00 3.85
2488 2806 3.094572 CAAATTCAGGAGCATGGGAGTT 58.905 45.455 0.00 0.00 0.00 3.01
2489 2807 2.725221 ATTCAGGAGCATGGGAGTTC 57.275 50.000 0.00 0.00 0.00 3.01
2490 2808 1.361204 TTCAGGAGCATGGGAGTTCA 58.639 50.000 0.00 0.00 0.00 3.18
2491 2809 0.907486 TCAGGAGCATGGGAGTTCAG 59.093 55.000 0.00 0.00 0.00 3.02
2492 2810 0.107312 CAGGAGCATGGGAGTTCAGG 60.107 60.000 0.00 0.00 0.00 3.86
2493 2811 0.548682 AGGAGCATGGGAGTTCAGGT 60.549 55.000 0.00 0.00 0.00 4.00
2494 2812 0.329596 GGAGCATGGGAGTTCAGGTT 59.670 55.000 0.00 0.00 0.00 3.50
2495 2813 1.680249 GGAGCATGGGAGTTCAGGTTC 60.680 57.143 0.00 0.00 0.00 3.62
2496 2814 0.036010 AGCATGGGAGTTCAGGTTCG 60.036 55.000 0.00 0.00 0.00 3.95
2497 2815 1.648467 GCATGGGAGTTCAGGTTCGC 61.648 60.000 0.00 0.00 0.00 4.70
2498 2816 0.036010 CATGGGAGTTCAGGTTCGCT 60.036 55.000 0.00 0.00 0.00 4.93
2499 2817 0.036010 ATGGGAGTTCAGGTTCGCTG 60.036 55.000 0.00 0.00 0.00 5.18
2500 2818 1.376037 GGGAGTTCAGGTTCGCTGG 60.376 63.158 0.00 0.00 0.00 4.85
2501 2819 1.376037 GGAGTTCAGGTTCGCTGGG 60.376 63.158 0.00 0.00 0.00 4.45
2502 2820 1.671742 GAGTTCAGGTTCGCTGGGA 59.328 57.895 0.00 0.00 0.00 4.37
2503 2821 0.250513 GAGTTCAGGTTCGCTGGGAT 59.749 55.000 0.00 0.00 0.00 3.85
2504 2822 0.693049 AGTTCAGGTTCGCTGGGATT 59.307 50.000 0.00 0.00 0.00 3.01
2505 2823 1.087501 GTTCAGGTTCGCTGGGATTC 58.912 55.000 0.00 0.00 0.00 2.52
2506 2824 0.391130 TTCAGGTTCGCTGGGATTCG 60.391 55.000 0.00 0.00 0.00 3.34
2507 2825 1.815421 CAGGTTCGCTGGGATTCGG 60.815 63.158 0.00 0.00 0.00 4.30
2508 2826 1.987855 AGGTTCGCTGGGATTCGGA 60.988 57.895 0.00 0.00 0.00 4.55
2509 2827 1.078708 GGTTCGCTGGGATTCGGAA 60.079 57.895 0.00 0.00 0.00 4.30
2510 2828 0.675522 GGTTCGCTGGGATTCGGAAA 60.676 55.000 0.00 0.00 0.00 3.13
2511 2829 0.446616 GTTCGCTGGGATTCGGAAAC 59.553 55.000 0.00 0.00 0.00 2.78
2512 2830 0.035598 TTCGCTGGGATTCGGAAACA 59.964 50.000 0.00 0.00 0.00 2.83
2513 2831 0.391130 TCGCTGGGATTCGGAAACAG 60.391 55.000 13.01 13.01 0.00 3.16
2514 2832 1.803289 GCTGGGATTCGGAAACAGC 59.197 57.895 21.26 21.26 46.24 4.40
2515 2833 1.982073 GCTGGGATTCGGAAACAGCG 61.982 60.000 21.26 3.56 44.04 5.18
2516 2834 0.673644 CTGGGATTCGGAAACAGCGT 60.674 55.000 0.00 0.00 0.00 5.07
2517 2835 0.953471 TGGGATTCGGAAACAGCGTG 60.953 55.000 0.00 0.00 0.00 5.34
2518 2836 1.134694 GGATTCGGAAACAGCGTGC 59.865 57.895 0.00 0.00 0.00 5.34
2519 2837 1.134694 GATTCGGAAACAGCGTGCC 59.865 57.895 0.00 0.00 0.00 5.01
2520 2838 1.573829 GATTCGGAAACAGCGTGCCA 61.574 55.000 0.00 0.00 0.00 4.92
2521 2839 1.852067 ATTCGGAAACAGCGTGCCAC 61.852 55.000 0.00 0.00 0.00 5.01
2522 2840 4.368808 CGGAAACAGCGTGCCACG 62.369 66.667 13.95 13.95 45.88 4.94
2523 2841 2.970324 GGAAACAGCGTGCCACGA 60.970 61.111 23.33 0.00 46.05 4.35
2524 2842 2.539338 GGAAACAGCGTGCCACGAA 61.539 57.895 23.33 0.00 46.05 3.85
2525 2843 1.368850 GAAACAGCGTGCCACGAAC 60.369 57.895 23.33 3.79 46.05 3.95
2526 2844 1.772063 GAAACAGCGTGCCACGAACT 61.772 55.000 23.33 6.48 46.05 3.01
2527 2845 1.772063 AAACAGCGTGCCACGAACTC 61.772 55.000 23.33 2.54 46.05 3.01
2528 2846 2.356313 CAGCGTGCCACGAACTCT 60.356 61.111 23.33 5.24 46.05 3.24
2529 2847 2.356313 AGCGTGCCACGAACTCTG 60.356 61.111 23.33 0.00 46.05 3.35
2530 2848 4.077188 GCGTGCCACGAACTCTGC 62.077 66.667 23.33 0.00 46.05 4.26
2531 2849 2.661537 CGTGCCACGAACTCTGCA 60.662 61.111 12.85 0.00 46.05 4.41
2532 2850 2.661566 CGTGCCACGAACTCTGCAG 61.662 63.158 12.85 7.63 46.05 4.41
2533 2851 2.666190 TGCCACGAACTCTGCAGC 60.666 61.111 9.47 0.00 0.00 5.25
2534 2852 2.666190 GCCACGAACTCTGCAGCA 60.666 61.111 9.47 0.00 0.00 4.41
2535 2853 2.675056 GCCACGAACTCTGCAGCAG 61.675 63.158 17.10 17.10 0.00 4.24
2536 2854 2.675056 CCACGAACTCTGCAGCAGC 61.675 63.158 18.43 2.46 42.57 5.25
2546 2864 3.267118 GCAGCAGCATCGCATCGA 61.267 61.111 0.00 0.00 41.58 3.59
2547 2865 2.816360 GCAGCAGCATCGCATCGAA 61.816 57.895 0.00 0.00 39.99 3.71
2548 2866 1.939597 CAGCAGCATCGCATCGAAT 59.060 52.632 0.00 0.00 39.99 3.34
2551 2869 1.000171 AGCAGCATCGCATCGAATCTA 60.000 47.619 0.00 0.00 39.99 1.98
2578 2896 5.091431 GCATTTGTCATTCTGCTTACTGAC 58.909 41.667 0.00 0.00 38.74 3.51
2791 3109 2.047844 ACGCGCTGCAGATGAAGT 60.048 55.556 20.43 9.68 0.00 3.01
2835 3153 1.230324 GCTCGACCAGCTTCAAAGTT 58.770 50.000 0.00 0.00 45.83 2.66
2858 3176 3.807622 CGCAAGAGGAGAGTCTACTAGAG 59.192 52.174 4.37 0.00 43.02 2.43
2859 3177 4.134563 GCAAGAGGAGAGTCTACTAGAGG 58.865 52.174 4.37 0.00 0.00 3.69
2867 3185 1.854280 AGTCTACTAGAGGGACCAGGG 59.146 57.143 0.00 0.00 0.00 4.45
2894 3242 6.983890 TGTAAAATTGAAAGCTCCAGGTTTTC 59.016 34.615 5.28 0.03 44.63 2.29
2900 3248 4.821805 TGAAAGCTCCAGGTTTTCTAGTTG 59.178 41.667 5.28 0.00 44.63 3.16
2911 3259 8.674607 CCAGGTTTTCTAGTTGGTGTTTATATC 58.325 37.037 0.00 0.00 0.00 1.63
2931 3279 2.054363 CATACGAGAATGCTACTGCCG 58.946 52.381 0.00 0.00 38.71 5.69
2932 3280 0.248907 TACGAGAATGCTACTGCCGC 60.249 55.000 0.00 0.00 38.71 6.53
2934 3282 1.889573 GAGAATGCTACTGCCGCCC 60.890 63.158 0.00 0.00 38.71 6.13
2945 3295 3.480133 GCCGCCCTGGGTGTAGAT 61.480 66.667 23.99 0.00 38.63 1.98
2946 3296 2.505982 CCGCCCTGGGTGTAGATG 59.494 66.667 23.99 5.35 0.00 2.90
2972 3322 3.204526 TGCCTTCTTTTGCAATTGTTGG 58.795 40.909 7.40 1.90 33.87 3.77
2973 3323 3.118482 TGCCTTCTTTTGCAATTGTTGGA 60.118 39.130 7.40 0.00 33.87 3.53
2976 3326 5.358922 CCTTCTTTTGCAATTGTTGGAGAA 58.641 37.500 7.40 10.72 30.85 2.87
2978 3328 6.315891 CCTTCTTTTGCAATTGTTGGAGAAAA 59.684 34.615 7.40 3.24 30.85 2.29
2979 3329 7.012610 CCTTCTTTTGCAATTGTTGGAGAAAAT 59.987 33.333 7.40 0.00 30.85 1.82
2981 3331 6.260493 TCTTTTGCAATTGTTGGAGAAAATGG 59.740 34.615 7.40 0.00 30.85 3.16
2982 3332 4.686191 TGCAATTGTTGGAGAAAATGGT 57.314 36.364 7.40 0.00 0.00 3.55
2983 3333 4.378774 TGCAATTGTTGGAGAAAATGGTG 58.621 39.130 7.40 0.00 0.00 4.17
3027 3379 6.106673 TCTAGAAGAAATTCATGTTCGTCCC 58.893 40.000 6.79 0.00 35.03 4.46
3034 3386 3.485463 TTCATGTTCGTCCCTGACTTT 57.515 42.857 0.00 0.00 0.00 2.66
3035 3387 3.040147 TCATGTTCGTCCCTGACTTTC 57.960 47.619 0.00 0.00 0.00 2.62
3036 3388 2.632996 TCATGTTCGTCCCTGACTTTCT 59.367 45.455 0.00 0.00 0.00 2.52
3037 3389 3.830178 TCATGTTCGTCCCTGACTTTCTA 59.170 43.478 0.00 0.00 0.00 2.10
3044 3396 3.265791 GTCCCTGACTTTCTATGTGCTG 58.734 50.000 0.00 0.00 0.00 4.41
3054 3406 3.862877 TCTATGTGCTGGTTATGGCAT 57.137 42.857 4.88 4.88 40.66 4.40
3055 3407 3.743521 TCTATGTGCTGGTTATGGCATC 58.256 45.455 1.65 0.00 40.66 3.91
3059 3411 0.625316 TGCTGGTTATGGCATCAGGT 59.375 50.000 1.65 0.00 33.23 4.00
3060 3412 1.005805 TGCTGGTTATGGCATCAGGTT 59.994 47.619 1.65 0.00 33.23 3.50
3062 3414 2.945440 GCTGGTTATGGCATCAGGTTGA 60.945 50.000 1.65 0.00 0.00 3.18
3068 3467 6.127479 TGGTTATGGCATCAGGTTGAATTTAC 60.127 38.462 1.65 0.00 0.00 2.01
3079 3478 6.040278 TCAGGTTGAATTTACTGCATTTCACA 59.960 34.615 0.00 0.00 0.00 3.58
3081 3480 6.701400 AGGTTGAATTTACTGCATTTCACAAC 59.299 34.615 0.00 0.00 34.97 3.32
3082 3481 6.073819 GGTTGAATTTACTGCATTTCACAACC 60.074 38.462 16.30 16.30 43.68 3.77
3085 3484 4.582701 TTTACTGCATTTCACAACCTGG 57.417 40.909 0.00 0.00 0.00 4.45
3174 3622 6.891908 AGGAGTATGTGCCTGTAAAATTTCAT 59.108 34.615 0.00 0.00 32.06 2.57
3175 3623 6.974622 GGAGTATGTGCCTGTAAAATTTCATG 59.025 38.462 0.00 0.00 0.00 3.07
3177 3625 7.765307 AGTATGTGCCTGTAAAATTTCATGAG 58.235 34.615 0.00 0.00 0.00 2.90
3178 3626 6.594788 ATGTGCCTGTAAAATTTCATGAGT 57.405 33.333 0.00 0.00 0.00 3.41
3179 3627 5.771469 TGTGCCTGTAAAATTTCATGAGTG 58.229 37.500 0.00 0.00 0.00 3.51
3180 3628 5.163513 GTGCCTGTAAAATTTCATGAGTGG 58.836 41.667 0.00 0.00 0.00 4.00
3184 3642 7.395772 TGCCTGTAAAATTTCATGAGTGGATTA 59.604 33.333 0.00 0.00 0.00 1.75
3188 3646 9.473007 TGTAAAATTTCATGAGTGGATTATGGA 57.527 29.630 0.00 0.00 0.00 3.41
3263 3809 9.807649 AAATTTTACAAGTATGCAGATCAATCC 57.192 29.630 0.00 0.00 0.00 3.01
3264 3810 6.942532 TTTACAAGTATGCAGATCAATCCC 57.057 37.500 0.00 0.00 0.00 3.85
3265 3811 3.825328 ACAAGTATGCAGATCAATCCCC 58.175 45.455 0.00 0.00 0.00 4.81
3268 3816 2.146342 GTATGCAGATCAATCCCCGTG 58.854 52.381 0.00 0.00 0.00 4.94
3277 3825 3.762407 TCAATCCCCGTGTATATGTGG 57.238 47.619 0.00 0.00 0.00 4.17
3284 3832 3.358118 CCCGTGTATATGTGGGGTTTTT 58.642 45.455 0.00 0.00 38.03 1.94
3367 4273 1.361543 ACCAGAGCCTAACCACCTCTA 59.638 52.381 0.00 0.00 34.37 2.43
3368 4274 1.757699 CCAGAGCCTAACCACCTCTAC 59.242 57.143 0.00 0.00 34.37 2.59
3370 4276 2.428890 CAGAGCCTAACCACCTCTACAG 59.571 54.545 0.00 0.00 34.37 2.74
3372 4278 2.166664 GAGCCTAACCACCTCTACAGTG 59.833 54.545 0.00 0.00 34.91 3.66
3374 4280 2.766828 GCCTAACCACCTCTACAGTGAT 59.233 50.000 0.00 0.00 37.42 3.06
3375 4281 3.197983 GCCTAACCACCTCTACAGTGATT 59.802 47.826 0.00 0.00 37.42 2.57
3406 4559 8.537728 AATCACTAATCAGGCATGGAAAATTA 57.462 30.769 0.00 0.00 0.00 1.40
3412 4565 9.820725 CTAATCAGGCATGGAAAATTATTTCAA 57.179 29.630 0.00 0.00 45.53 2.69
3419 4572 7.499895 GGCATGGAAAATTATTTCAACCATGAT 59.500 33.333 30.79 12.34 45.53 2.45
3438 4593 2.390225 TCCCTGAGGAATAGAGGCTC 57.610 55.000 6.34 6.34 40.08 4.70
3439 4594 0.965439 CCCTGAGGAATAGAGGCTCG 59.035 60.000 9.22 0.00 33.47 5.03
3445 4600 2.691011 GAGGAATAGAGGCTCGACAAGT 59.309 50.000 9.22 0.00 0.00 3.16
3462 4617 3.260884 ACAAGTCGGAGGAAATTAGCTCA 59.739 43.478 0.00 0.00 0.00 4.26
3481 4636 7.129457 AGCTCAATACCATCACAAGATAAGA 57.871 36.000 0.00 0.00 31.88 2.10
3550 4705 4.781934 AGGCTTGAGTAACACAAAACTCT 58.218 39.130 4.32 0.00 42.17 3.24
3555 4710 6.905609 GCTTGAGTAACACAAAACTCTTACAC 59.094 38.462 4.32 0.00 42.17 2.90
3636 4792 9.566432 AGAAAAGATAGACTGAAACAGAAACAT 57.434 29.630 5.76 0.00 35.18 2.71
3643 4799 5.998363 AGACTGAAACAGAAACATAGGGTTC 59.002 40.000 0.00 0.00 35.13 3.62
3680 4838 3.248363 CAGCGAAGACAAACATCAAGACA 59.752 43.478 0.00 0.00 0.00 3.41
3757 4915 2.101415 TCACTATCATGCAGGAAGACGG 59.899 50.000 4.62 0.00 0.00 4.79
3761 4919 1.817099 CATGCAGGAAGACGGGAGC 60.817 63.158 0.00 0.00 0.00 4.70
3763 4921 2.435059 GCAGGAAGACGGGAGCAC 60.435 66.667 0.00 0.00 0.00 4.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.925043 TTAACCGGAAACATAATACATGTGT 57.075 32.000 9.46 0.00 31.80 3.72
1 2 9.872757 GTATTAACCGGAAACATAATACATGTG 57.127 33.333 9.46 0.00 39.40 3.21
2 3 9.616156 TGTATTAACCGGAAACATAATACATGT 57.384 29.630 22.31 2.69 42.13 3.21
10 11 9.048446 GCTAGAATTGTATTAACCGGAAACATA 57.952 33.333 9.46 0.00 0.00 2.29
11 12 7.554835 TGCTAGAATTGTATTAACCGGAAACAT 59.445 33.333 9.46 0.00 0.00 2.71
12 13 6.879993 TGCTAGAATTGTATTAACCGGAAACA 59.120 34.615 9.46 1.34 0.00 2.83
13 14 7.311364 TGCTAGAATTGTATTAACCGGAAAC 57.689 36.000 9.46 0.00 0.00 2.78
14 15 7.771361 TCATGCTAGAATTGTATTAACCGGAAA 59.229 33.333 9.46 1.61 0.00 3.13
15 16 7.276658 TCATGCTAGAATTGTATTAACCGGAA 58.723 34.615 9.46 0.00 0.00 4.30
16 17 6.822442 TCATGCTAGAATTGTATTAACCGGA 58.178 36.000 9.46 0.00 0.00 5.14
17 18 7.490962 TTCATGCTAGAATTGTATTAACCGG 57.509 36.000 0.00 0.00 0.00 5.28
92 93 4.594920 TCTGAAGGAAATATGCCCTAGAGG 59.405 45.833 0.00 0.00 39.47 3.69
93 94 5.815233 TCTGAAGGAAATATGCCCTAGAG 57.185 43.478 0.00 0.00 31.36 2.43
94 95 5.513788 GCATCTGAAGGAAATATGCCCTAGA 60.514 44.000 0.00 0.00 37.55 2.43
95 96 4.699257 GCATCTGAAGGAAATATGCCCTAG 59.301 45.833 0.00 0.00 37.55 3.02
96 97 4.655963 GCATCTGAAGGAAATATGCCCTA 58.344 43.478 0.00 0.00 37.55 3.53
97 98 3.494332 GCATCTGAAGGAAATATGCCCT 58.506 45.455 0.00 0.00 37.55 5.19
98 99 3.930634 GCATCTGAAGGAAATATGCCC 57.069 47.619 0.00 0.00 37.55 5.36
100 101 4.396522 AGAGGCATCTGAAGGAAATATGC 58.603 43.478 0.00 0.00 41.69 3.14
101 102 5.472820 GGAAGAGGCATCTGAAGGAAATATG 59.527 44.000 0.00 0.00 35.37 1.78
102 103 5.457342 GGGAAGAGGCATCTGAAGGAAATAT 60.457 44.000 0.00 0.00 35.37 1.28
103 104 4.141390 GGGAAGAGGCATCTGAAGGAAATA 60.141 45.833 0.00 0.00 35.37 1.40
104 105 3.372458 GGGAAGAGGCATCTGAAGGAAAT 60.372 47.826 0.00 0.00 35.37 2.17
105 106 2.025887 GGGAAGAGGCATCTGAAGGAAA 60.026 50.000 0.00 0.00 35.37 3.13
106 107 1.561542 GGGAAGAGGCATCTGAAGGAA 59.438 52.381 0.00 0.00 35.37 3.36
107 108 1.207791 GGGAAGAGGCATCTGAAGGA 58.792 55.000 0.00 0.00 35.37 3.36
108 109 1.140652 GAGGGAAGAGGCATCTGAAGG 59.859 57.143 0.00 0.00 35.37 3.46
109 110 2.117865 AGAGGGAAGAGGCATCTGAAG 58.882 52.381 0.00 0.00 35.37 3.02
110 111 2.260639 AGAGGGAAGAGGCATCTGAA 57.739 50.000 0.00 0.00 35.37 3.02
111 112 3.116977 TGATAGAGGGAAGAGGCATCTGA 60.117 47.826 0.00 0.00 35.37 3.27
112 113 3.237746 TGATAGAGGGAAGAGGCATCTG 58.762 50.000 0.00 0.00 35.37 2.90
113 114 3.509442 CTGATAGAGGGAAGAGGCATCT 58.491 50.000 0.00 0.00 37.39 2.90
130 131 5.195940 CCATTGTGATTGTTCCTACCTGAT 58.804 41.667 0.00 0.00 0.00 2.90
133 134 4.202567 ACACCATTGTGATTGTTCCTACCT 60.203 41.667 3.55 0.00 45.76 3.08
213 214 5.765182 AGAAATTGTCTCGTGGATTTCAGTT 59.235 36.000 16.48 0.00 39.67 3.16
215 216 5.625251 CAGAAATTGTCTCGTGGATTTCAG 58.375 41.667 16.48 9.84 39.67 3.02
331 334 2.844839 GACCTAGCCCATCCGCCT 60.845 66.667 0.00 0.00 0.00 5.52
334 337 1.048724 TCCTTGACCTAGCCCATCCG 61.049 60.000 0.00 0.00 0.00 4.18
335 338 0.470341 GTCCTTGACCTAGCCCATCC 59.530 60.000 0.00 0.00 0.00 3.51
378 381 0.933700 ATTATCTTGTGGGGTGGGGG 59.066 55.000 0.00 0.00 0.00 5.40
379 382 2.765699 CAAATTATCTTGTGGGGTGGGG 59.234 50.000 0.00 0.00 0.00 4.96
380 383 3.440127 ACAAATTATCTTGTGGGGTGGG 58.560 45.455 0.00 0.00 38.12 4.61
381 384 4.085733 TGACAAATTATCTTGTGGGGTGG 58.914 43.478 0.00 0.00 39.63 4.61
382 385 4.766891 ACTGACAAATTATCTTGTGGGGTG 59.233 41.667 0.00 0.00 39.63 4.61
383 386 4.766891 CACTGACAAATTATCTTGTGGGGT 59.233 41.667 0.00 0.00 39.63 4.95
384 387 4.158394 CCACTGACAAATTATCTTGTGGGG 59.842 45.833 17.65 1.98 39.63 4.96
385 388 4.158394 CCCACTGACAAATTATCTTGTGGG 59.842 45.833 23.57 23.57 45.63 4.61
386 389 4.380867 GCCCACTGACAAATTATCTTGTGG 60.381 45.833 18.06 18.06 39.63 4.17
387 390 4.380867 GGCCCACTGACAAATTATCTTGTG 60.381 45.833 0.00 0.00 39.63 3.33
388 391 3.763897 GGCCCACTGACAAATTATCTTGT 59.236 43.478 0.00 0.00 42.23 3.16
389 392 3.763360 TGGCCCACTGACAAATTATCTTG 59.237 43.478 0.00 0.00 0.00 3.02
400 403 0.392998 ACGAATCATGGCCCACTGAC 60.393 55.000 0.00 0.00 0.00 3.51
401 404 0.107703 GACGAATCATGGCCCACTGA 60.108 55.000 0.00 0.43 0.00 3.41
408 411 0.531974 TAAGCCCGACGAATCATGGC 60.532 55.000 0.00 0.00 40.94 4.40
425 428 1.280710 TCCCATCTTTGGCGCTTCTAA 59.719 47.619 7.64 0.00 42.15 2.10
444 447 4.798574 AGTGCCAAATCTTCGAAAACATC 58.201 39.130 0.00 0.00 0.00 3.06
445 448 4.853924 AGTGCCAAATCTTCGAAAACAT 57.146 36.364 0.00 0.00 0.00 2.71
451 454 3.007506 TGGAGTAAGTGCCAAATCTTCGA 59.992 43.478 0.00 0.00 0.00 3.71
458 461 3.857157 AGTCTTGGAGTAAGTGCCAAA 57.143 42.857 0.00 0.00 43.09 3.28
481 484 2.029073 CGTGGTGCAGACGACCTT 59.971 61.111 11.89 0.00 39.21 3.50
486 489 2.100631 GGGAATCGTGGTGCAGACG 61.101 63.158 11.18 11.18 38.20 4.18
508 511 7.201938 CCGGGGTATACATATGTCGGTTATATT 60.202 40.741 12.68 0.00 0.00 1.28
509 512 6.266103 CCGGGGTATACATATGTCGGTTATAT 59.734 42.308 12.68 0.80 0.00 0.86
511 514 4.403432 CCGGGGTATACATATGTCGGTTAT 59.597 45.833 12.68 2.33 0.00 1.89
514 517 2.173519 CCGGGGTATACATATGTCGGT 58.826 52.381 12.68 2.66 0.00 4.69
515 518 2.173519 ACCGGGGTATACATATGTCGG 58.826 52.381 22.75 22.75 41.65 4.79
517 520 5.655532 ACAGATACCGGGGTATACATATGTC 59.344 44.000 12.68 0.00 40.93 3.06
518 521 5.586877 ACAGATACCGGGGTATACATATGT 58.413 41.667 13.93 13.93 40.93 2.29
519 522 7.834881 ATACAGATACCGGGGTATACATATG 57.165 40.000 6.32 0.00 40.93 1.78
520 523 9.940974 TTTATACAGATACCGGGGTATACATAT 57.059 33.333 6.32 10.11 40.93 1.78
523 526 6.437162 GGTTTATACAGATACCGGGGTATACA 59.563 42.308 6.32 0.90 40.93 2.29
524 527 6.867550 GGTTTATACAGATACCGGGGTATAC 58.132 44.000 6.32 3.09 40.93 1.47
540 543 1.202615 GCCTCACCCCTCGGTTTATAC 60.203 57.143 0.00 0.00 42.04 1.47
542 545 1.632965 GGCCTCACCCCTCGGTTTAT 61.633 60.000 0.00 0.00 42.04 1.40
559 562 0.818296 ATCAGGTGTCGTCTACAGGC 59.182 55.000 0.00 0.00 39.29 4.85
571 574 4.056740 GAGATCTATGTGTGCATCAGGTG 58.943 47.826 0.00 0.00 36.58 4.00
594 597 3.703420 ACGTTACAGATTGATCTACCGC 58.297 45.455 0.00 0.00 34.85 5.68
606 609 4.406648 TCGAGGGAGTATACGTTACAGA 57.593 45.455 0.00 0.00 0.00 3.41
607 610 5.490139 TTTCGAGGGAGTATACGTTACAG 57.510 43.478 0.00 0.00 0.00 2.74
614 617 7.384387 GGTTGTATTGATTTCGAGGGAGTATAC 59.616 40.741 0.00 0.00 0.00 1.47
616 619 6.126883 TGGTTGTATTGATTTCGAGGGAGTAT 60.127 38.462 0.00 0.00 0.00 2.12
621 624 5.637006 TTTGGTTGTATTGATTTCGAGGG 57.363 39.130 0.00 0.00 0.00 4.30
645 648 8.613482 TGTTGAAGAGATAATACTCTACGTCTG 58.387 37.037 0.00 0.00 45.08 3.51
649 652 9.549509 GCTATGTTGAAGAGATAATACTCTACG 57.450 37.037 0.00 0.00 45.08 3.51
650 653 9.849166 GGCTATGTTGAAGAGATAATACTCTAC 57.151 37.037 0.00 0.00 45.08 2.59
651 654 9.026121 GGGCTATGTTGAAGAGATAATACTCTA 57.974 37.037 0.00 0.00 45.08 2.43
653 656 6.809196 CGGGCTATGTTGAAGAGATAATACTC 59.191 42.308 0.00 0.00 37.19 2.59
654 657 6.295349 CCGGGCTATGTTGAAGAGATAATACT 60.295 42.308 0.00 0.00 0.00 2.12
662 667 1.808133 GCTCCGGGCTATGTTGAAGAG 60.808 57.143 0.00 0.00 38.06 2.85
679 684 2.099756 GGCACATGATTTTACCCAGCTC 59.900 50.000 0.00 0.00 0.00 4.09
684 689 5.852282 AACATAGGCACATGATTTTACCC 57.148 39.130 0.00 0.00 0.00 3.69
685 690 6.320164 TGGTAACATAGGCACATGATTTTACC 59.680 38.462 0.00 15.66 46.17 2.85
686 691 7.328277 TGGTAACATAGGCACATGATTTTAC 57.672 36.000 0.00 0.00 46.17 2.01
703 708 3.332190 AGCCTTGGTGCGATGGTAACA 62.332 52.381 0.00 0.00 44.78 2.41
704 709 0.676782 AGCCTTGGTGCGATGGTAAC 60.677 55.000 0.00 0.00 36.02 2.50
705 710 0.906066 TAGCCTTGGTGCGATGGTAA 59.094 50.000 0.00 0.00 36.02 2.85
706 711 0.177141 GTAGCCTTGGTGCGATGGTA 59.823 55.000 0.00 0.00 36.02 3.25
707 712 1.078426 GTAGCCTTGGTGCGATGGT 60.078 57.895 0.00 0.00 36.02 3.55
708 713 1.819632 GGTAGCCTTGGTGCGATGG 60.820 63.158 0.00 0.00 36.02 3.51
709 714 1.078497 TGGTAGCCTTGGTGCGATG 60.078 57.895 0.00 0.00 36.02 3.84
710 715 1.221840 CTGGTAGCCTTGGTGCGAT 59.778 57.895 0.00 0.00 36.02 4.58
711 716 1.888436 CTCTGGTAGCCTTGGTGCGA 61.888 60.000 0.00 0.00 36.02 5.10
712 717 1.448540 CTCTGGTAGCCTTGGTGCG 60.449 63.158 0.00 0.00 36.02 5.34
713 718 1.078143 CCTCTGGTAGCCTTGGTGC 60.078 63.158 0.00 0.00 0.00 5.01
714 719 0.250513 GTCCTCTGGTAGCCTTGGTG 59.749 60.000 0.00 0.00 0.00 4.17
715 720 0.910088 GGTCCTCTGGTAGCCTTGGT 60.910 60.000 0.00 0.00 0.00 3.67
716 721 1.627297 GGGTCCTCTGGTAGCCTTGG 61.627 65.000 0.00 0.00 0.00 3.61
717 722 1.627297 GGGGTCCTCTGGTAGCCTTG 61.627 65.000 0.00 0.00 33.67 3.61
718 723 1.307084 GGGGTCCTCTGGTAGCCTT 60.307 63.158 0.00 0.00 33.67 4.35
719 724 0.929734 TAGGGGTCCTCTGGTAGCCT 60.930 60.000 0.00 0.00 34.61 4.58
720 725 0.759812 GTAGGGGTCCTCTGGTAGCC 60.760 65.000 0.00 0.00 34.61 3.93
721 726 0.759812 GGTAGGGGTCCTCTGGTAGC 60.760 65.000 0.00 0.00 34.61 3.58
722 727 0.467659 CGGTAGGGGTCCTCTGGTAG 60.468 65.000 0.00 0.00 34.61 3.18
723 728 1.616921 CGGTAGGGGTCCTCTGGTA 59.383 63.158 0.00 0.00 34.61 3.25
724 729 2.363361 CGGTAGGGGTCCTCTGGT 59.637 66.667 0.00 0.00 34.61 4.00
725 730 2.444140 CCGGTAGGGGTCCTCTGG 60.444 72.222 0.00 0.00 34.61 3.86
740 745 1.819208 TCAAATGCCGCAGATCCCG 60.819 57.895 0.00 0.00 0.00 5.14
741 746 0.749454 AGTCAAATGCCGCAGATCCC 60.749 55.000 0.00 0.00 0.00 3.85
742 747 0.659957 GAGTCAAATGCCGCAGATCC 59.340 55.000 0.00 0.00 0.00 3.36
743 748 0.659957 GGAGTCAAATGCCGCAGATC 59.340 55.000 0.00 0.00 0.00 2.75
744 749 0.035152 TGGAGTCAAATGCCGCAGAT 60.035 50.000 0.00 0.00 0.00 2.90
745 750 0.035152 ATGGAGTCAAATGCCGCAGA 60.035 50.000 0.00 0.00 0.00 4.26
746 751 0.379669 GATGGAGTCAAATGCCGCAG 59.620 55.000 0.00 0.00 0.00 5.18
747 752 0.322366 TGATGGAGTCAAATGCCGCA 60.322 50.000 0.00 0.00 32.78 5.69
748 753 0.810648 TTGATGGAGTCAAATGCCGC 59.189 50.000 0.00 0.00 43.64 6.53
749 754 2.086869 ACTTGATGGAGTCAAATGCCG 58.913 47.619 0.00 0.00 45.74 5.69
750 755 6.017605 CAGTATACTTGATGGAGTCAAATGCC 60.018 42.308 1.56 0.00 45.74 4.40
751 756 6.540189 ACAGTATACTTGATGGAGTCAAATGC 59.460 38.462 1.56 0.00 45.74 3.56
752 757 7.550551 ACACAGTATACTTGATGGAGTCAAATG 59.449 37.037 16.84 0.76 45.74 2.32
753 758 7.624549 ACACAGTATACTTGATGGAGTCAAAT 58.375 34.615 16.84 0.00 45.74 2.32
754 759 7.004555 ACACAGTATACTTGATGGAGTCAAA 57.995 36.000 16.84 0.00 45.74 2.69
755 760 6.605471 ACACAGTATACTTGATGGAGTCAA 57.395 37.500 16.84 0.00 44.36 3.18
756 761 7.116736 TCTACACAGTATACTTGATGGAGTCA 58.883 38.462 15.67 1.57 34.25 3.41
757 762 7.569639 TCTACACAGTATACTTGATGGAGTC 57.430 40.000 15.67 0.00 0.00 3.36
758 763 7.396339 TGTTCTACACAGTATACTTGATGGAGT 59.604 37.037 15.67 7.64 0.00 3.85
759 764 7.772166 TGTTCTACACAGTATACTTGATGGAG 58.228 38.462 16.84 14.50 0.00 3.86
760 765 7.712204 TGTTCTACACAGTATACTTGATGGA 57.288 36.000 16.84 7.39 0.00 3.41
761 766 8.948631 AATGTTCTACACAGTATACTTGATGG 57.051 34.615 16.84 4.41 39.40 3.51
765 770 9.329913 GCAAAAATGTTCTACACAGTATACTTG 57.670 33.333 1.56 7.91 39.40 3.16
766 771 9.062524 TGCAAAAATGTTCTACACAGTATACTT 57.937 29.630 1.56 0.00 39.40 2.24
767 772 8.615878 TGCAAAAATGTTCTACACAGTATACT 57.384 30.769 0.00 0.00 39.40 2.12
768 773 9.329913 CTTGCAAAAATGTTCTACACAGTATAC 57.670 33.333 0.00 0.00 39.40 1.47
769 774 9.278978 TCTTGCAAAAATGTTCTACACAGTATA 57.721 29.630 0.00 0.00 39.40 1.47
770 775 8.165239 TCTTGCAAAAATGTTCTACACAGTAT 57.835 30.769 0.00 0.00 39.40 2.12
771 776 7.561021 TCTTGCAAAAATGTTCTACACAGTA 57.439 32.000 0.00 0.00 39.40 2.74
772 777 6.449635 TCTTGCAAAAATGTTCTACACAGT 57.550 33.333 0.00 0.00 39.40 3.55
773 778 7.754069 TTTCTTGCAAAAATGTTCTACACAG 57.246 32.000 0.00 0.00 39.40 3.66
774 779 8.539770 TTTTTCTTGCAAAAATGTTCTACACA 57.460 26.923 0.00 0.00 40.71 3.72
796 801 2.551644 GGAGCGACCCGATGTTTTT 58.448 52.632 0.00 0.00 0.00 1.94
797 802 4.296265 GGAGCGACCCGATGTTTT 57.704 55.556 0.00 0.00 0.00 2.43
808 813 3.665515 TATGGGTGGTCGGGAGCGA 62.666 63.158 0.00 0.00 0.00 4.93
809 814 2.040009 ATTATGGGTGGTCGGGAGCG 62.040 60.000 0.00 0.00 0.00 5.03
810 815 0.250338 GATTATGGGTGGTCGGGAGC 60.250 60.000 0.00 0.00 0.00 4.70
811 816 0.033504 CGATTATGGGTGGTCGGGAG 59.966 60.000 0.00 0.00 0.00 4.30
812 817 0.688418 ACGATTATGGGTGGTCGGGA 60.688 55.000 0.00 0.00 38.33 5.14
813 818 0.179468 AACGATTATGGGTGGTCGGG 59.821 55.000 0.00 0.00 38.33 5.14
814 819 1.295792 CAACGATTATGGGTGGTCGG 58.704 55.000 0.00 0.00 38.33 4.79
815 820 2.018542 ACAACGATTATGGGTGGTCG 57.981 50.000 0.00 0.00 39.78 4.79
816 821 3.340034 TGAACAACGATTATGGGTGGTC 58.660 45.455 3.29 3.29 0.00 4.02
817 822 3.426787 TGAACAACGATTATGGGTGGT 57.573 42.857 0.00 0.00 0.00 4.16
818 823 4.775058 TTTGAACAACGATTATGGGTGG 57.225 40.909 0.00 0.00 0.00 4.61
819 824 6.865726 TGAATTTTGAACAACGATTATGGGTG 59.134 34.615 0.00 0.00 0.00 4.61
820 825 6.987386 TGAATTTTGAACAACGATTATGGGT 58.013 32.000 0.00 0.00 0.00 4.51
821 826 7.881643 TTGAATTTTGAACAACGATTATGGG 57.118 32.000 0.00 0.00 0.00 4.00
852 858 3.146066 TCACCCCACTGATTTTCGAAAG 58.854 45.455 10.98 1.67 0.00 2.62
924 936 0.890996 GGATAGGGGCAAATCGGCAG 60.891 60.000 0.00 0.00 43.60 4.85
930 946 6.038609 TGGATAGATAAGGATAGGGGCAAAT 58.961 40.000 0.00 0.00 0.00 2.32
972 988 3.721706 GTGGGGAGGAGGGCAGTG 61.722 72.222 0.00 0.00 0.00 3.66
973 989 3.933542 GAGTGGGGAGGAGGGCAGT 62.934 68.421 0.00 0.00 0.00 4.40
975 991 4.741239 GGAGTGGGGAGGAGGGCA 62.741 72.222 0.00 0.00 0.00 5.36
988 1008 3.036429 GCGGCATTGGAGAGGGAGT 62.036 63.158 0.00 0.00 0.00 3.85
1119 1157 2.202531 GCGTACCCCGTCGAGAAC 60.203 66.667 0.00 0.00 39.32 3.01
1224 1262 3.192922 GACATCCCGCCGAAACCG 61.193 66.667 0.00 0.00 0.00 4.44
2083 2281 3.509967 TGACCAAGAGAGCAATAAGACGA 59.490 43.478 0.00 0.00 0.00 4.20
2472 2790 0.907486 CTGAACTCCCATGCTCCTGA 59.093 55.000 0.00 0.00 0.00 3.86
2473 2791 0.107312 CCTGAACTCCCATGCTCCTG 60.107 60.000 0.00 0.00 0.00 3.86
2474 2792 0.548682 ACCTGAACTCCCATGCTCCT 60.549 55.000 0.00 0.00 0.00 3.69
2475 2793 0.329596 AACCTGAACTCCCATGCTCC 59.670 55.000 0.00 0.00 0.00 4.70
2476 2794 1.743996 GAACCTGAACTCCCATGCTC 58.256 55.000 0.00 0.00 0.00 4.26
2477 2795 0.036010 CGAACCTGAACTCCCATGCT 60.036 55.000 0.00 0.00 0.00 3.79
2478 2796 1.648467 GCGAACCTGAACTCCCATGC 61.648 60.000 0.00 0.00 0.00 4.06
2479 2797 0.036010 AGCGAACCTGAACTCCCATG 60.036 55.000 0.00 0.00 0.00 3.66
2480 2798 0.036010 CAGCGAACCTGAACTCCCAT 60.036 55.000 0.00 0.00 44.64 4.00
2481 2799 1.371183 CAGCGAACCTGAACTCCCA 59.629 57.895 0.00 0.00 44.64 4.37
2482 2800 1.376037 CCAGCGAACCTGAACTCCC 60.376 63.158 0.00 0.00 44.64 4.30
2483 2801 1.376037 CCCAGCGAACCTGAACTCC 60.376 63.158 0.00 0.00 44.64 3.85
2484 2802 0.250513 ATCCCAGCGAACCTGAACTC 59.749 55.000 0.00 0.00 44.64 3.01
2485 2803 0.693049 AATCCCAGCGAACCTGAACT 59.307 50.000 0.00 0.00 44.64 3.01
2486 2804 1.087501 GAATCCCAGCGAACCTGAAC 58.912 55.000 0.00 0.00 44.64 3.18
2487 2805 0.391130 CGAATCCCAGCGAACCTGAA 60.391 55.000 0.00 0.00 44.64 3.02
2488 2806 1.218047 CGAATCCCAGCGAACCTGA 59.782 57.895 0.00 0.00 44.64 3.86
2489 2807 1.815421 CCGAATCCCAGCGAACCTG 60.815 63.158 0.00 0.00 41.41 4.00
2490 2808 1.550130 TTCCGAATCCCAGCGAACCT 61.550 55.000 0.00 0.00 0.00 3.50
2491 2809 0.675522 TTTCCGAATCCCAGCGAACC 60.676 55.000 0.00 0.00 0.00 3.62
2492 2810 0.446616 GTTTCCGAATCCCAGCGAAC 59.553 55.000 0.00 0.00 0.00 3.95
2493 2811 0.035598 TGTTTCCGAATCCCAGCGAA 59.964 50.000 0.00 0.00 0.00 4.70
2494 2812 0.391130 CTGTTTCCGAATCCCAGCGA 60.391 55.000 0.00 0.00 0.00 4.93
2495 2813 1.982073 GCTGTTTCCGAATCCCAGCG 61.982 60.000 10.43 0.00 39.13 5.18
2496 2814 1.803289 GCTGTTTCCGAATCCCAGC 59.197 57.895 10.43 10.43 41.37 4.85
2497 2815 0.673644 ACGCTGTTTCCGAATCCCAG 60.674 55.000 0.00 0.00 0.00 4.45
2498 2816 0.953471 CACGCTGTTTCCGAATCCCA 60.953 55.000 0.00 0.00 0.00 4.37
2499 2817 1.794222 CACGCTGTTTCCGAATCCC 59.206 57.895 0.00 0.00 0.00 3.85
2500 2818 1.134694 GCACGCTGTTTCCGAATCC 59.865 57.895 0.00 0.00 0.00 3.01
2501 2819 1.134694 GGCACGCTGTTTCCGAATC 59.865 57.895 0.00 0.00 0.00 2.52
2502 2820 1.599518 TGGCACGCTGTTTCCGAAT 60.600 52.632 0.00 0.00 0.00 3.34
2503 2821 2.203084 TGGCACGCTGTTTCCGAA 60.203 55.556 0.00 0.00 0.00 4.30
2504 2822 2.970324 GTGGCACGCTGTTTCCGA 60.970 61.111 0.00 0.00 35.02 4.55
2505 2823 4.368808 CGTGGCACGCTGTTTCCG 62.369 66.667 28.30 0.00 33.65 4.30
2506 2824 2.539338 TTCGTGGCACGCTGTTTCC 61.539 57.895 33.59 0.00 42.21 3.13
2507 2825 1.368850 GTTCGTGGCACGCTGTTTC 60.369 57.895 33.59 15.58 42.21 2.78
2508 2826 1.772063 GAGTTCGTGGCACGCTGTTT 61.772 55.000 33.59 17.05 42.21 2.83
2509 2827 2.203015 AGTTCGTGGCACGCTGTT 60.203 55.556 33.59 16.42 42.21 3.16
2510 2828 2.661866 GAGTTCGTGGCACGCTGT 60.662 61.111 33.59 19.92 42.21 4.40
2511 2829 2.356313 AGAGTTCGTGGCACGCTG 60.356 61.111 33.59 10.00 42.21 5.18
2512 2830 2.356313 CAGAGTTCGTGGCACGCT 60.356 61.111 33.59 25.40 42.21 5.07
2513 2831 4.077188 GCAGAGTTCGTGGCACGC 62.077 66.667 33.59 21.11 42.21 5.34
2514 2832 2.661537 TGCAGAGTTCGTGGCACG 60.662 61.111 32.75 32.75 44.19 5.34
2515 2833 2.959357 GCTGCAGAGTTCGTGGCAC 61.959 63.158 20.43 7.79 32.06 5.01
2516 2834 2.666190 GCTGCAGAGTTCGTGGCA 60.666 61.111 20.43 0.00 34.66 4.92
2517 2835 2.666190 TGCTGCAGAGTTCGTGGC 60.666 61.111 20.43 0.00 0.00 5.01
2518 2836 2.675056 GCTGCTGCAGAGTTCGTGG 61.675 63.158 32.30 4.57 39.41 4.94
2519 2837 1.957695 TGCTGCTGCAGAGTTCGTG 60.958 57.895 32.30 5.34 45.31 4.35
2520 2838 2.423018 TGCTGCTGCAGAGTTCGT 59.577 55.556 32.30 0.00 45.31 3.85
2529 2847 2.114331 ATTCGATGCGATGCTGCTGC 62.114 55.000 8.89 8.89 35.23 5.25
2530 2848 0.110778 GATTCGATGCGATGCTGCTG 60.111 55.000 0.00 0.00 35.23 4.41
2531 2849 0.249784 AGATTCGATGCGATGCTGCT 60.250 50.000 0.00 0.00 35.23 4.24
2532 2850 1.422388 TAGATTCGATGCGATGCTGC 58.578 50.000 0.00 0.00 35.23 5.25
2533 2851 3.181523 CCAATAGATTCGATGCGATGCTG 60.182 47.826 0.00 0.00 35.23 4.41
2534 2852 2.998670 CCAATAGATTCGATGCGATGCT 59.001 45.455 0.00 0.00 35.23 3.79
2535 2853 2.475187 GCCAATAGATTCGATGCGATGC 60.475 50.000 0.00 0.00 35.23 3.91
2536 2854 2.738314 TGCCAATAGATTCGATGCGATG 59.262 45.455 0.00 0.00 35.23 3.84
2537 2855 3.044235 TGCCAATAGATTCGATGCGAT 57.956 42.857 0.00 0.00 35.23 4.58
2538 2856 2.524569 TGCCAATAGATTCGATGCGA 57.475 45.000 0.00 0.00 0.00 5.10
2539 2857 3.818961 AATGCCAATAGATTCGATGCG 57.181 42.857 0.00 0.00 0.00 4.73
2540 2858 4.863491 ACAAATGCCAATAGATTCGATGC 58.137 39.130 0.00 0.00 0.00 3.91
2541 2859 6.063640 TGACAAATGCCAATAGATTCGATG 57.936 37.500 0.00 0.00 0.00 3.84
2542 2860 6.889301 ATGACAAATGCCAATAGATTCGAT 57.111 33.333 0.00 0.00 0.00 3.59
2543 2861 6.543465 AGAATGACAAATGCCAATAGATTCGA 59.457 34.615 0.00 0.00 0.00 3.71
2544 2862 6.635641 CAGAATGACAAATGCCAATAGATTCG 59.364 38.462 0.00 0.00 39.69 3.34
2545 2863 6.420008 GCAGAATGACAAATGCCAATAGATTC 59.580 38.462 0.00 0.00 39.69 2.52
2546 2864 6.097839 AGCAGAATGACAAATGCCAATAGATT 59.902 34.615 6.34 0.00 39.69 2.40
2547 2865 5.597182 AGCAGAATGACAAATGCCAATAGAT 59.403 36.000 6.34 0.00 39.69 1.98
2548 2866 4.951715 AGCAGAATGACAAATGCCAATAGA 59.048 37.500 6.34 0.00 39.69 1.98
2551 2869 4.546829 AAGCAGAATGACAAATGCCAAT 57.453 36.364 6.34 0.00 39.69 3.16
2673 2991 3.582647 TGTTCCTCTTCCTGATGCTGTAA 59.417 43.478 0.00 0.00 0.00 2.41
2778 3096 1.727213 GCGTTGAACTTCATCTGCAGC 60.727 52.381 9.47 0.00 0.00 5.25
2791 3109 2.726912 GTCGTCGTCGGCGTTGAA 60.727 61.111 19.81 0.00 39.49 2.69
2835 3153 2.791347 AGTAGACTCTCCTCTTGCGA 57.209 50.000 0.00 0.00 0.00 5.10
2858 3176 2.176045 CAATTTTACACCCCTGGTCCC 58.824 52.381 0.00 0.00 31.02 4.46
2859 3177 3.163616 TCAATTTTACACCCCTGGTCC 57.836 47.619 0.00 0.00 31.02 4.46
2867 3185 4.280929 ACCTGGAGCTTTCAATTTTACACC 59.719 41.667 0.00 0.00 0.00 4.16
2894 3242 9.961265 TTCTCGTATGATATAAACACCAACTAG 57.039 33.333 0.00 0.00 0.00 2.57
2900 3248 7.891183 AGCATTCTCGTATGATATAAACACC 57.109 36.000 0.00 0.00 0.00 4.16
2911 3259 2.054363 CGGCAGTAGCATTCTCGTATG 58.946 52.381 0.00 0.00 44.61 2.39
2931 3279 1.200519 TACACATCTACACCCAGGGC 58.799 55.000 4.91 0.00 0.00 5.19
2932 3280 2.485479 GCATACACATCTACACCCAGGG 60.485 54.545 2.85 2.85 0.00 4.45
2934 3282 2.435805 AGGCATACACATCTACACCCAG 59.564 50.000 0.00 0.00 0.00 4.45
2945 3295 4.870123 ATTGCAAAAGAAGGCATACACA 57.130 36.364 1.71 0.00 40.17 3.72
2946 3296 4.990426 ACAATTGCAAAAGAAGGCATACAC 59.010 37.500 1.71 0.00 40.17 2.90
2972 3322 6.507023 ACAAAACAGATGACACCATTTTCTC 58.493 36.000 0.00 0.00 32.09 2.87
2973 3323 6.469782 ACAAAACAGATGACACCATTTTCT 57.530 33.333 0.00 0.00 32.09 2.52
2979 3329 9.295825 AGAATATAAACAAAACAGATGACACCA 57.704 29.630 0.00 0.00 0.00 4.17
3004 3356 6.036517 CAGGGACGAACATGAATTTCTTCTAG 59.963 42.308 0.00 0.00 32.29 2.43
3006 3358 4.697352 CAGGGACGAACATGAATTTCTTCT 59.303 41.667 0.00 0.00 32.29 2.85
3010 3362 4.003648 AGTCAGGGACGAACATGAATTTC 58.996 43.478 0.00 0.00 37.67 2.17
3020 3372 3.616560 GCACATAGAAAGTCAGGGACGAA 60.617 47.826 0.00 0.00 37.67 3.85
3022 3374 2.093973 AGCACATAGAAAGTCAGGGACG 60.094 50.000 0.00 0.00 37.67 4.79
3024 3376 2.237143 CCAGCACATAGAAAGTCAGGGA 59.763 50.000 0.00 0.00 0.00 4.20
3027 3379 5.295292 CCATAACCAGCACATAGAAAGTCAG 59.705 44.000 0.00 0.00 0.00 3.51
3034 3386 3.136260 TGATGCCATAACCAGCACATAGA 59.864 43.478 0.00 0.00 42.84 1.98
3035 3387 3.479489 TGATGCCATAACCAGCACATAG 58.521 45.455 0.00 0.00 42.84 2.23
3036 3388 3.479489 CTGATGCCATAACCAGCACATA 58.521 45.455 0.00 0.00 42.84 2.29
3037 3389 2.304092 CTGATGCCATAACCAGCACAT 58.696 47.619 0.00 0.00 42.84 3.21
3044 3396 5.343307 AAATTCAACCTGATGCCATAACC 57.657 39.130 0.00 0.00 0.00 2.85
3054 3406 6.040278 TGTGAAATGCAGTAAATTCAACCTGA 59.960 34.615 0.00 0.00 33.93 3.86
3055 3407 6.215121 TGTGAAATGCAGTAAATTCAACCTG 58.785 36.000 0.00 0.00 33.93 4.00
3059 3411 6.700960 CAGGTTGTGAAATGCAGTAAATTCAA 59.299 34.615 0.00 0.00 33.93 2.69
3060 3412 6.215121 CAGGTTGTGAAATGCAGTAAATTCA 58.785 36.000 0.00 0.00 0.00 2.57
3062 3414 5.070313 ACCAGGTTGTGAAATGCAGTAAATT 59.930 36.000 0.00 0.00 0.00 1.82
3068 3467 3.317711 TGTTACCAGGTTGTGAAATGCAG 59.682 43.478 0.00 0.00 0.00 4.41
3079 3478 7.339466 CCTAAGAGCATTTTATGTTACCAGGTT 59.661 37.037 0.00 0.00 0.00 3.50
3081 3480 6.238759 GCCTAAGAGCATTTTATGTTACCAGG 60.239 42.308 0.00 0.00 0.00 4.45
3082 3481 6.543831 AGCCTAAGAGCATTTTATGTTACCAG 59.456 38.462 0.00 0.00 34.23 4.00
3085 3484 7.553881 TCAGCCTAAGAGCATTTTATGTTAC 57.446 36.000 0.00 0.00 34.23 2.50
3138 3537 9.769677 ACAGGCACATACTCCTAGATATATAAA 57.230 33.333 0.00 0.00 0.00 1.40
3141 3540 9.769677 TTTACAGGCACATACTCCTAGATATAT 57.230 33.333 0.00 0.00 0.00 0.86
3143 3542 8.492415 TTTTACAGGCACATACTCCTAGATAT 57.508 34.615 0.00 0.00 0.00 1.63
3144 3543 7.907841 TTTTACAGGCACATACTCCTAGATA 57.092 36.000 0.00 0.00 0.00 1.98
3146 3545 6.808321 ATTTTACAGGCACATACTCCTAGA 57.192 37.500 0.00 0.00 0.00 2.43
3147 3546 7.552687 TGAAATTTTACAGGCACATACTCCTAG 59.447 37.037 0.00 0.00 0.00 3.02
3148 3547 7.398829 TGAAATTTTACAGGCACATACTCCTA 58.601 34.615 0.00 0.00 0.00 2.94
3149 3548 6.245408 TGAAATTTTACAGGCACATACTCCT 58.755 36.000 0.00 0.00 0.00 3.69
3150 3549 6.509418 TGAAATTTTACAGGCACATACTCC 57.491 37.500 0.00 0.00 0.00 3.85
3151 3550 7.761409 TCATGAAATTTTACAGGCACATACTC 58.239 34.615 0.00 0.00 0.00 2.59
3152 3551 7.394359 ACTCATGAAATTTTACAGGCACATACT 59.606 33.333 0.00 0.00 0.00 2.12
3153 3552 7.485913 CACTCATGAAATTTTACAGGCACATAC 59.514 37.037 0.00 0.00 0.00 2.39
3208 3671 7.676683 TCTAAGTGGATTCAAGTAGGCTATT 57.323 36.000 0.00 0.00 0.00 1.73
3210 3673 7.490657 TTTCTAAGTGGATTCAAGTAGGCTA 57.509 36.000 0.00 0.00 0.00 3.93
3211 3674 6.374417 TTTCTAAGTGGATTCAAGTAGGCT 57.626 37.500 0.00 0.00 0.00 4.58
3212 3675 6.823689 TCATTTCTAAGTGGATTCAAGTAGGC 59.176 38.462 0.00 0.00 0.00 3.93
3213 3676 8.792830 TTCATTTCTAAGTGGATTCAAGTAGG 57.207 34.615 0.00 0.00 0.00 3.18
3240 3786 6.321181 GGGGATTGATCTGCATACTTGTAAAA 59.679 38.462 0.00 0.00 0.00 1.52
3244 3790 3.745480 CGGGGATTGATCTGCATACTTGT 60.745 47.826 0.00 0.00 0.00 3.16
3245 3791 2.810274 CGGGGATTGATCTGCATACTTG 59.190 50.000 0.00 0.00 0.00 3.16
3248 3794 2.146342 CACGGGGATTGATCTGCATAC 58.854 52.381 0.00 0.00 0.00 2.39
3253 3799 4.931601 CACATATACACGGGGATTGATCTG 59.068 45.833 0.00 0.00 0.00 2.90
3254 3800 4.020218 CCACATATACACGGGGATTGATCT 60.020 45.833 0.00 0.00 0.00 2.75
3255 3801 4.253685 CCACATATACACGGGGATTGATC 58.746 47.826 0.00 0.00 0.00 2.92
3256 3802 3.009033 CCCACATATACACGGGGATTGAT 59.991 47.826 0.00 0.00 41.49 2.57
3257 3803 2.370519 CCCACATATACACGGGGATTGA 59.629 50.000 0.00 0.00 41.49 2.57
3258 3804 2.778299 CCCACATATACACGGGGATTG 58.222 52.381 0.00 0.00 41.49 2.67
3263 3809 2.721425 AAACCCCACATATACACGGG 57.279 50.000 0.00 0.00 39.85 5.28
3345 4116 2.185387 GAGGTGGTTAGGCTCTGGTTA 58.815 52.381 0.00 0.00 0.00 2.85
3347 4118 0.117340 AGAGGTGGTTAGGCTCTGGT 59.883 55.000 0.00 0.00 0.00 4.00
3372 4278 8.666573 CATGCCTGATTAGTGATTATCTGAATC 58.333 37.037 0.00 1.49 0.00 2.52
3374 4280 6.938596 CCATGCCTGATTAGTGATTATCTGAA 59.061 38.462 0.00 0.00 0.00 3.02
3375 4281 6.270695 TCCATGCCTGATTAGTGATTATCTGA 59.729 38.462 0.00 0.00 0.00 3.27
3406 4559 3.528905 TCCTCAGGGATCATGGTTGAAAT 59.471 43.478 0.00 0.00 36.57 2.17
3412 4565 4.166539 CTCTATTCCTCAGGGATCATGGT 58.833 47.826 0.00 0.00 41.87 3.55
3419 4572 1.479573 CGAGCCTCTATTCCTCAGGGA 60.480 57.143 0.00 0.00 40.36 4.20
3429 4584 1.025812 CCGACTTGTCGAGCCTCTAT 58.974 55.000 22.54 0.00 34.64 1.98
3435 4590 0.038526 TTTCCTCCGACTTGTCGAGC 60.039 55.000 22.54 0.00 34.64 5.03
3438 4593 2.603560 GCTAATTTCCTCCGACTTGTCG 59.396 50.000 15.28 15.28 0.00 4.35
3439 4594 3.863041 AGCTAATTTCCTCCGACTTGTC 58.137 45.455 0.00 0.00 0.00 3.18
3445 4600 4.407621 TGGTATTGAGCTAATTTCCTCCGA 59.592 41.667 0.00 0.00 0.00 4.55
3451 4606 8.213518 TCTTGTGATGGTATTGAGCTAATTTC 57.786 34.615 0.00 0.00 0.00 2.17
3505 4660 2.597510 GGCCCGCCTGTCAAACTT 60.598 61.111 0.00 0.00 0.00 2.66
3550 4705 9.270640 ACTGTTTTATATGTTACCAACGTGTAA 57.729 29.630 0.00 0.00 33.81 2.41
3580 4736 3.006859 TGACCTGATGTTGTGTACCAGAG 59.993 47.826 0.00 0.00 0.00 3.35
3584 4740 3.678056 TCTGACCTGATGTTGTGTACC 57.322 47.619 0.00 0.00 0.00 3.34
3619 4775 5.568620 ACCCTATGTTTCTGTTTCAGTCT 57.431 39.130 0.00 0.00 32.61 3.24
3622 4778 4.994852 TCGAACCCTATGTTTCTGTTTCAG 59.005 41.667 0.00 0.00 37.29 3.02
3624 4780 4.995487 AGTCGAACCCTATGTTTCTGTTTC 59.005 41.667 0.00 0.00 37.29 2.78
3636 4792 3.118884 GCTGGATTGTTAGTCGAACCCTA 60.119 47.826 0.00 0.00 37.22 3.53
3643 4799 0.647410 CGCTGCTGGATTGTTAGTCG 59.353 55.000 0.00 0.00 0.00 4.18
3680 4838 5.707764 GCTTTGTACTGGAGAAAGGAAGATT 59.292 40.000 11.08 0.00 38.56 2.40
3768 4926 3.078843 ATGGCTGGCTGATTCCCCC 62.079 63.158 2.00 0.00 0.00 5.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.