Multiple sequence alignment - TraesCS5B01G531800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G531800 chr5B 100.000 3406 0 0 1 3406 689668633 689672038 0.000000e+00 6290.0
1 TraesCS5B01G531800 chr5B 95.031 644 11 3 982 1608 689646048 689646687 0.000000e+00 992.0
2 TraesCS5B01G531800 chr5B 88.309 556 51 6 2865 3406 480247310 480247865 0.000000e+00 654.0
3 TraesCS5B01G531800 chr5B 86.397 544 55 10 2865 3406 57974178 57973652 8.200000e-161 577.0
4 TraesCS5B01G531800 chr5B 87.657 397 25 12 568 942 689645649 689646043 1.120000e-119 440.0
5 TraesCS5B01G531800 chr5B 84.177 316 31 4 990 1286 492131849 492132164 4.300000e-74 289.0
6 TraesCS5B01G531800 chr5B 81.366 322 53 6 2164 2483 492134023 492134339 4.360000e-64 255.0
7 TraesCS5B01G531800 chr5B 89.172 157 15 2 1979 2135 121673324 121673170 9.640000e-46 195.0
8 TraesCS5B01G531800 chr5B 88.034 117 14 0 1706 1822 689647097 689647213 4.580000e-29 139.0
9 TraesCS5B01G531800 chr5B 85.714 119 17 0 1706 1824 696166210 696166328 3.570000e-25 126.0
10 TraesCS5B01G531800 chr5B 85.047 107 14 1 2766 2870 264886795 264886901 1.290000e-19 108.0
11 TraesCS5B01G531800 chr5D 88.263 1295 95 28 348 1611 546565433 546566701 0.000000e+00 1496.0
12 TraesCS5B01G531800 chr5D 84.950 299 30 4 1003 1286 410278062 410278360 4.300000e-74 289.0
13 TraesCS5B01G531800 chr5D 79.188 394 62 14 2178 2563 410284824 410285205 4.360000e-64 255.0
14 TraesCS5B01G531800 chr5D 82.938 211 21 8 1091 1286 554577214 554577004 3.490000e-40 176.0
15 TraesCS5B01G531800 chr5D 89.744 117 12 0 1706 1822 546567140 546567256 2.120000e-32 150.0
16 TraesCS5B01G531800 chr5D 85.714 119 17 0 1706 1824 554520344 554520226 3.570000e-25 126.0
17 TraesCS5B01G531800 chr4A 91.709 784 33 13 1071 1835 622441714 622440944 0.000000e+00 1059.0
18 TraesCS5B01G531800 chr4A 91.454 784 35 13 1071 1835 622559346 622558576 0.000000e+00 1048.0
19 TraesCS5B01G531800 chr4A 91.338 785 34 15 1071 1835 622510781 622510011 0.000000e+00 1042.0
20 TraesCS5B01G531800 chr4A 92.803 528 37 1 2865 3392 622438807 622438281 0.000000e+00 763.0
21 TraesCS5B01G531800 chr4A 92.614 528 37 2 2865 3392 622473662 622473137 0.000000e+00 758.0
22 TraesCS5B01G531800 chr4A 92.424 528 38 2 2865 3392 622507858 622507333 0.000000e+00 752.0
23 TraesCS5B01G531800 chr4A 92.424 528 39 1 2865 3392 622556418 622555892 0.000000e+00 752.0
24 TraesCS5B01G531800 chr4A 94.722 360 16 1 2217 2576 622475017 622474661 1.070000e-154 556.0
25 TraesCS5B01G531800 chr4A 94.722 360 16 1 2217 2576 622557775 622557419 1.070000e-154 556.0
26 TraesCS5B01G531800 chr4A 94.167 360 18 1 2217 2576 622509213 622508857 2.310000e-151 545.0
27 TraesCS5B01G531800 chr4A 93.889 360 19 1 2221 2580 622440155 622439799 1.080000e-149 540.0
28 TraesCS5B01G531800 chr4A 88.816 304 29 5 2570 2870 622439149 622438848 5.370000e-98 368.0
29 TraesCS5B01G531800 chr4A 88.487 304 30 3 2570 2870 622508200 622507899 2.500000e-96 363.0
30 TraesCS5B01G531800 chr4A 87.829 304 32 3 2570 2870 622474004 622473703 5.410000e-93 351.0
31 TraesCS5B01G531800 chr4A 87.829 304 32 3 2570 2870 622556760 622556459 5.410000e-93 351.0
32 TraesCS5B01G531800 chr4A 86.547 223 25 4 80 300 533320968 533320749 1.220000e-59 241.0
33 TraesCS5B01G531800 chr4A 80.894 246 35 5 1366 1601 614004980 614005223 2.090000e-42 183.0
34 TraesCS5B01G531800 chr4A 88.235 119 14 0 1706 1824 614015592 614015710 3.540000e-30 143.0
35 TraesCS5B01G531800 chr4A 83.553 152 21 4 73 224 622510944 622510797 4.580000e-29 139.0
36 TraesCS5B01G531800 chr4A 91.463 82 7 0 1849 1930 622509467 622509386 2.780000e-21 113.0
37 TraesCS5B01G531800 chr4A 91.463 82 7 0 1849 1930 622558029 622557948 2.780000e-21 113.0
38 TraesCS5B01G531800 chr4A 90.244 82 8 0 1849 1930 622440400 622440319 1.290000e-19 108.0
39 TraesCS5B01G531800 chr4A 93.617 47 3 0 1942 1988 622440334 622440288 1.700000e-08 71.3
40 TraesCS5B01G531800 chr4A 93.617 47 3 0 1942 1988 622475205 622475159 1.700000e-08 71.3
41 TraesCS5B01G531800 chr4A 93.617 47 3 0 1942 1988 622509401 622509355 1.700000e-08 71.3
42 TraesCS5B01G531800 chr4A 93.617 47 3 0 1942 1988 622557963 622557917 1.700000e-08 71.3
43 TraesCS5B01G531800 chr4B 87.950 556 50 8 2865 3406 667982996 667983548 1.030000e-179 640.0
44 TraesCS5B01G531800 chr4B 87.850 214 24 2 89 301 71704416 71704628 2.030000e-62 250.0
45 TraesCS5B01G531800 chr4B 94.656 131 7 0 1986 2116 275999190 275999060 1.600000e-48 204.0
46 TraesCS5B01G531800 chr4D 88.087 554 33 7 2865 3406 372978877 372979409 8.020000e-176 627.0
47 TraesCS5B01G531800 chr4D 88.493 365 29 5 3055 3406 456677061 456677425 2.430000e-116 429.0
48 TraesCS5B01G531800 chr4D 84.255 235 28 1 1372 1597 477088938 477088704 1.590000e-53 220.0
49 TraesCS5B01G531800 chr4D 92.562 121 9 0 1706 1826 477088330 477088210 1.260000e-39 174.0
50 TraesCS5B01G531800 chr4D 82.407 216 23 6 1091 1291 477089281 477089066 1.260000e-39 174.0
51 TraesCS5B01G531800 chr7D 87.906 554 35 7 2865 3406 618278803 618279336 1.040000e-174 623.0
52 TraesCS5B01G531800 chr7D 87.097 279 29 6 2876 3149 486557020 486556744 3.300000e-80 309.0
53 TraesCS5B01G531800 chr7D 87.264 212 26 1 89 300 552186593 552186383 1.220000e-59 241.0
54 TraesCS5B01G531800 chr7D 93.284 134 9 0 1984 2117 490590930 490590797 7.460000e-47 198.0
55 TraesCS5B01G531800 chr7D 92.647 136 9 1 1982 2116 12423927 12423792 9.640000e-46 195.0
56 TraesCS5B01G531800 chr2D 87.410 556 35 8 2865 3406 59163162 59162628 1.050000e-169 606.0
57 TraesCS5B01G531800 chr2D 87.365 554 37 11 2865 3406 650382188 650381656 3.760000e-169 604.0
58 TraesCS5B01G531800 chr2D 87.215 219 26 2 83 300 8146513 8146296 7.300000e-62 248.0
59 TraesCS5B01G531800 chr2D 93.284 134 9 0 1984 2117 536091024 536091157 7.460000e-47 198.0
60 TraesCS5B01G531800 chr2D 81.277 235 35 1 1372 1597 593227033 593227267 7.510000e-42 182.0
61 TraesCS5B01G531800 chr5A 87.324 213 27 0 88 300 475652413 475652625 9.440000e-61 244.0
62 TraesCS5B01G531800 chr3B 87.383 214 26 1 88 300 538815844 538816057 9.440000e-61 244.0
63 TraesCS5B01G531800 chr3B 91.549 142 10 2 1980 2120 507292659 507292519 9.640000e-46 195.0
64 TraesCS5B01G531800 chr3B 82.550 149 17 8 1986 2131 422472172 422472314 4.620000e-24 122.0
65 TraesCS5B01G531800 chr3B 89.583 96 9 1 3055 3149 63028639 63028734 1.660000e-23 121.0
66 TraesCS5B01G531800 chr7B 87.324 213 26 1 89 300 173229521 173229733 3.400000e-60 243.0
67 TraesCS5B01G531800 chr7B 89.404 151 13 3 1986 2135 656518108 656518256 1.610000e-43 187.0
68 TraesCS5B01G531800 chr2B 87.097 217 25 3 87 300 507435983 507435767 3.400000e-60 243.0
69 TraesCS5B01G531800 chr2B 86.364 220 25 5 87 301 134369580 134369361 5.680000e-58 235.0
70 TraesCS5B01G531800 chr2B 95.312 128 6 0 1986 2113 518742260 518742387 1.600000e-48 204.0
71 TraesCS5B01G531800 chr2B 81.197 234 35 1 1372 1596 719499418 719499651 2.700000e-41 180.0
72 TraesCS5B01G531800 chr3D 91.096 146 11 2 1977 2120 496172894 496172749 2.680000e-46 196.0
73 TraesCS5B01G531800 chrUn 88.298 94 11 0 2772 2865 21622254 21622347 2.780000e-21 113.0
74 TraesCS5B01G531800 chr7A 85.714 70 8 2 2060 2128 531183330 531183262 4.710000e-09 73.1
75 TraesCS5B01G531800 chr2A 88.889 45 5 0 2084 2128 398656577 398656533 4.750000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G531800 chr5B 689668633 689672038 3405 False 6290.000000 6290 100.000000 1 3406 1 chr5B.!!$F3 3405
1 TraesCS5B01G531800 chr5B 480247310 480247865 555 False 654.000000 654 88.309000 2865 3406 1 chr5B.!!$F2 541
2 TraesCS5B01G531800 chr5B 57973652 57974178 526 True 577.000000 577 86.397000 2865 3406 1 chr5B.!!$R1 541
3 TraesCS5B01G531800 chr5B 689645649 689647213 1564 False 523.666667 992 90.240667 568 1822 3 chr5B.!!$F6 1254
4 TraesCS5B01G531800 chr5B 492131849 492134339 2490 False 272.000000 289 82.771500 990 2483 2 chr5B.!!$F5 1493
5 TraesCS5B01G531800 chr5D 546565433 546567256 1823 False 823.000000 1496 89.003500 348 1822 2 chr5D.!!$F3 1474
6 TraesCS5B01G531800 chr4A 622438281 622441714 3433 True 484.883333 1059 91.846333 1071 3392 6 chr4A.!!$R2 2321
7 TraesCS5B01G531800 chr4A 622555892 622559346 3454 True 481.883333 1048 91.918167 1071 3392 6 chr4A.!!$R5 2321
8 TraesCS5B01G531800 chr4A 622473137 622475205 2068 True 434.075000 758 92.195500 1942 3392 4 chr4A.!!$R3 1450
9 TraesCS5B01G531800 chr4A 622507333 622510944 3611 True 432.185714 1042 90.721286 73 3392 7 chr4A.!!$R4 3319
10 TraesCS5B01G531800 chr4B 667982996 667983548 552 False 640.000000 640 87.950000 2865 3406 1 chr4B.!!$F2 541
11 TraesCS5B01G531800 chr4D 372978877 372979409 532 False 627.000000 627 88.087000 2865 3406 1 chr4D.!!$F1 541
12 TraesCS5B01G531800 chr7D 618278803 618279336 533 False 623.000000 623 87.906000 2865 3406 1 chr7D.!!$F1 541
13 TraesCS5B01G531800 chr2D 59162628 59163162 534 True 606.000000 606 87.410000 2865 3406 1 chr2D.!!$R2 541
14 TraesCS5B01G531800 chr2D 650381656 650382188 532 True 604.000000 604 87.365000 2865 3406 1 chr2D.!!$R3 541

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
886 918 0.247145 GCCGTTCAACGTTATCAGCG 60.247 55.0 9.52 1.88 40.58 5.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2804 5908 0.027586 GAACATATCGTTGGCACCGC 59.972 55.0 0.0 0.0 38.19 5.68 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 7.654022 AAACCATTAAGAAACACCTTCTCAA 57.346 32.000 0.00 0.00 44.00 3.02
25 26 7.654022 AACCATTAAGAAACACCTTCTCAAA 57.346 32.000 0.00 0.00 44.00 2.69
26 27 7.654022 ACCATTAAGAAACACCTTCTCAAAA 57.346 32.000 0.00 0.00 44.00 2.44
27 28 8.073467 ACCATTAAGAAACACCTTCTCAAAAA 57.927 30.769 0.00 0.00 44.00 1.94
28 29 8.704668 ACCATTAAGAAACACCTTCTCAAAAAT 58.295 29.630 0.00 0.00 44.00 1.82
29 30 9.546428 CCATTAAGAAACACCTTCTCAAAAATT 57.454 29.630 0.00 0.00 44.00 1.82
34 35 9.500785 AAGAAACACCTTCTCAAAAATTGAAAA 57.499 25.926 0.00 0.00 44.00 2.29
35 36 9.671279 AGAAACACCTTCTCAAAAATTGAAAAT 57.329 25.926 0.00 0.00 40.61 1.82
36 37 9.706846 GAAACACCTTCTCAAAAATTGAAAATG 57.293 29.630 0.00 0.00 39.58 2.32
37 38 9.447157 AAACACCTTCTCAAAAATTGAAAATGA 57.553 25.926 0.00 0.00 39.58 2.57
38 39 8.424274 ACACCTTCTCAAAAATTGAAAATGAC 57.576 30.769 0.00 0.00 39.58 3.06
39 40 8.040132 ACACCTTCTCAAAAATTGAAAATGACA 58.960 29.630 0.00 0.00 39.58 3.58
40 41 9.048446 CACCTTCTCAAAAATTGAAAATGACAT 57.952 29.630 0.00 0.00 39.58 3.06
41 42 9.617523 ACCTTCTCAAAAATTGAAAATGACATT 57.382 25.926 0.00 0.00 39.58 2.71
63 64 5.964958 TTCAATCCTTGAAGGTGCTAAAG 57.035 39.130 11.60 0.00 44.21 1.85
64 65 4.985538 TCAATCCTTGAAGGTGCTAAAGT 58.014 39.130 11.60 0.00 36.59 2.66
65 66 6.121776 TCAATCCTTGAAGGTGCTAAAGTA 57.878 37.500 11.60 0.00 36.59 2.24
66 67 6.721318 TCAATCCTTGAAGGTGCTAAAGTAT 58.279 36.000 11.60 0.00 36.59 2.12
67 68 7.175104 TCAATCCTTGAAGGTGCTAAAGTATT 58.825 34.615 11.60 0.00 36.59 1.89
68 69 7.336931 TCAATCCTTGAAGGTGCTAAAGTATTC 59.663 37.037 11.60 0.00 36.59 1.75
69 70 6.374417 TCCTTGAAGGTGCTAAAGTATTCT 57.626 37.500 11.60 0.00 36.53 2.40
70 71 6.779860 TCCTTGAAGGTGCTAAAGTATTCTT 58.220 36.000 11.60 0.00 36.53 2.52
71 72 6.879458 TCCTTGAAGGTGCTAAAGTATTCTTC 59.121 38.462 11.60 0.00 36.53 2.87
98 99 4.678538 AAACTAGTCAGTACTCCCTCCT 57.321 45.455 0.00 0.00 37.15 3.69
106 107 4.020128 GTCAGTACTCCCTCCTGTCATTTT 60.020 45.833 0.00 0.00 0.00 1.82
112 113 5.953571 ACTCCCTCCTGTCATTTTTACTTT 58.046 37.500 0.00 0.00 0.00 2.66
114 115 5.701224 TCCCTCCTGTCATTTTTACTTTGT 58.299 37.500 0.00 0.00 0.00 2.83
115 116 5.534654 TCCCTCCTGTCATTTTTACTTTGTG 59.465 40.000 0.00 0.00 0.00 3.33
161 162 6.180771 ACTTTGCAAAGTTTGACCAAATTG 57.819 33.333 33.85 10.80 46.52 2.32
327 328 9.899226 CAGATAAACTTTAAAAGAACAGAAGGG 57.101 33.333 0.00 0.00 0.00 3.95
328 329 9.862149 AGATAAACTTTAAAAGAACAGAAGGGA 57.138 29.630 0.00 0.00 0.00 4.20
330 331 7.956328 AAACTTTAAAAGAACAGAAGGGAGT 57.044 32.000 0.00 0.00 0.00 3.85
332 333 8.447924 AACTTTAAAAGAACAGAAGGGAGTAC 57.552 34.615 0.00 0.00 0.00 2.73
333 334 7.571025 ACTTTAAAAGAACAGAAGGGAGTACA 58.429 34.615 0.00 0.00 0.00 2.90
334 335 8.218488 ACTTTAAAAGAACAGAAGGGAGTACAT 58.782 33.333 0.00 0.00 0.00 2.29
335 336 8.990163 TTTAAAAGAACAGAAGGGAGTACATT 57.010 30.769 0.00 0.00 0.00 2.71
336 337 6.884280 AAAAGAACAGAAGGGAGTACATTG 57.116 37.500 0.00 0.00 0.00 2.82
337 338 5.825593 AAGAACAGAAGGGAGTACATTGA 57.174 39.130 0.00 0.00 0.00 2.57
338 339 6.380079 AAGAACAGAAGGGAGTACATTGAT 57.620 37.500 0.00 0.00 0.00 2.57
339 340 5.983540 AGAACAGAAGGGAGTACATTGATC 58.016 41.667 0.00 0.00 0.00 2.92
340 341 5.723887 AGAACAGAAGGGAGTACATTGATCT 59.276 40.000 0.00 0.00 0.00 2.75
341 342 6.214412 AGAACAGAAGGGAGTACATTGATCTT 59.786 38.462 0.00 0.00 0.00 2.40
342 343 7.400339 AGAACAGAAGGGAGTACATTGATCTTA 59.600 37.037 0.00 0.00 0.00 2.10
343 344 7.118496 ACAGAAGGGAGTACATTGATCTTAG 57.882 40.000 0.00 0.00 0.00 2.18
344 345 5.988561 CAGAAGGGAGTACATTGATCTTAGC 59.011 44.000 0.00 0.00 0.00 3.09
345 346 5.902431 AGAAGGGAGTACATTGATCTTAGCT 59.098 40.000 0.00 0.00 0.00 3.32
346 347 5.543507 AGGGAGTACATTGATCTTAGCTG 57.456 43.478 0.00 0.00 0.00 4.24
386 387 6.573485 GCTTATAGCTAGCTTAGGGAAAGAGG 60.573 46.154 24.88 1.46 38.45 3.69
388 389 1.202710 GCTAGCTTAGGGAAAGAGGGC 60.203 57.143 7.70 0.00 37.38 5.19
399 400 0.543749 AAAGAGGGCATTCGAGGGAG 59.456 55.000 0.00 0.00 0.00 4.30
442 450 2.158900 AGACGAATGTGCCTAGGATTGG 60.159 50.000 14.75 7.52 0.00 3.16
464 472 2.868583 CCACGATGAACTGATAAGGCTG 59.131 50.000 0.00 0.00 0.00 4.85
468 476 3.489229 CGATGAACTGATAAGGCTGACGA 60.489 47.826 0.00 0.00 0.00 4.20
481 489 2.048127 GACGAAGGCGGCTCAACT 60.048 61.111 13.70 0.00 43.91 3.16
497 512 3.857854 CTCGAGCGGCATGTGCAC 61.858 66.667 10.75 10.75 44.36 4.57
503 518 3.434319 CGGCATGTGCACCTGGTC 61.434 66.667 21.50 8.85 44.36 4.02
641 657 2.646175 GGCAGGTAGACCAGACGCA 61.646 63.158 0.66 0.00 38.89 5.24
751 767 2.432972 GCCACGCAAAAGGGCATG 60.433 61.111 0.00 0.00 46.92 4.06
752 768 2.432972 CCACGCAAAAGGGCATGC 60.433 61.111 9.90 9.90 39.17 4.06
788 819 2.048127 GTGGCACGACCTCTGACC 60.048 66.667 0.00 0.00 40.22 4.02
798 829 5.178797 CACGACCTCTGACCAAGATATTTT 58.821 41.667 0.00 0.00 33.29 1.82
799 830 5.643777 CACGACCTCTGACCAAGATATTTTT 59.356 40.000 0.00 0.00 33.29 1.94
805 836 3.947834 CTGACCAAGATATTTTTCCCGCT 59.052 43.478 0.00 0.00 0.00 5.52
806 837 4.340617 TGACCAAGATATTTTTCCCGCTT 58.659 39.130 0.00 0.00 0.00 4.68
807 838 5.502079 TGACCAAGATATTTTTCCCGCTTA 58.498 37.500 0.00 0.00 0.00 3.09
833 864 4.586618 CTCAGGAAGCCACGTGAG 57.413 61.111 19.30 8.47 43.04 3.51
886 918 0.247145 GCCGTTCAACGTTATCAGCG 60.247 55.000 9.52 1.88 40.58 5.18
960 997 5.888161 AGTGCCAAAATGGTCTTAGGATTAG 59.112 40.000 0.00 0.00 40.46 1.73
964 1001 6.039829 GCCAAAATGGTCTTAGGATTAGGAAG 59.960 42.308 0.00 0.00 40.46 3.46
970 1007 7.446106 TGGTCTTAGGATTAGGAAGCAAATA 57.554 36.000 0.00 0.00 0.00 1.40
1307 2189 7.903145 AGTTATATGTGTCTGTAAACTGTGGA 58.097 34.615 0.00 0.00 0.00 4.02
1308 2190 8.540388 AGTTATATGTGTCTGTAAACTGTGGAT 58.460 33.333 0.00 0.00 0.00 3.41
1309 2191 8.818057 GTTATATGTGTCTGTAAACTGTGGATC 58.182 37.037 0.00 0.00 0.00 3.36
1310 2192 3.649073 TGTGTCTGTAAACTGTGGATCG 58.351 45.455 0.00 0.00 0.00 3.69
1611 2881 2.370281 AGTACGTGCTCACTCCATTG 57.630 50.000 0.00 0.00 0.00 2.82
1615 3031 0.320683 CGTGCTCACTCCATTGTCCA 60.321 55.000 0.00 0.00 0.00 4.02
1617 3033 2.440409 GTGCTCACTCCATTGTCCATT 58.560 47.619 0.00 0.00 0.00 3.16
1632 3048 8.689061 CCATTGTCCATTTCAAGATAAATCTCA 58.311 33.333 0.00 0.00 35.76 3.27
1685 3196 8.721478 TGTGAAACTATATCAGCTTCAAGTTTC 58.279 33.333 19.88 19.88 46.56 2.78
1731 3565 2.084546 GGTGCTATGAACCAACTGACC 58.915 52.381 0.00 0.00 37.65 4.02
1826 3660 9.507329 AACCGATATGATTAAAGATGTAAGCAT 57.493 29.630 0.00 0.00 41.61 3.79
1838 3672 8.709386 AAAGATGTAAGCATAGAGTACTTGTG 57.291 34.615 0.00 0.00 35.07 3.33
1846 3680 7.713734 AGCATAGAGTACTTGTGTAACCTAA 57.286 36.000 0.00 0.00 34.36 2.69
1923 4293 3.923017 CCAGGCTTGGTAAGTTTTCAG 57.077 47.619 6.72 0.00 39.79 3.02
1924 4294 3.222603 CCAGGCTTGGTAAGTTTTCAGT 58.777 45.455 6.72 0.00 39.79 3.41
1925 4295 3.004734 CCAGGCTTGGTAAGTTTTCAGTG 59.995 47.826 6.72 0.00 39.79 3.66
1926 4296 3.882888 CAGGCTTGGTAAGTTTTCAGTGA 59.117 43.478 0.00 0.00 0.00 3.41
1927 4297 4.023707 CAGGCTTGGTAAGTTTTCAGTGAG 60.024 45.833 0.00 0.00 0.00 3.51
1928 4298 4.134563 GGCTTGGTAAGTTTTCAGTGAGA 58.865 43.478 0.00 0.00 0.00 3.27
1929 4299 4.762251 GGCTTGGTAAGTTTTCAGTGAGAT 59.238 41.667 0.00 0.00 0.00 2.75
1930 4300 5.335191 GGCTTGGTAAGTTTTCAGTGAGATG 60.335 44.000 0.00 0.00 0.00 2.90
1931 4301 5.239525 GCTTGGTAAGTTTTCAGTGAGATGT 59.760 40.000 0.00 0.00 0.00 3.06
1932 4302 6.238759 GCTTGGTAAGTTTTCAGTGAGATGTT 60.239 38.462 0.00 0.00 0.00 2.71
1933 4303 7.041372 GCTTGGTAAGTTTTCAGTGAGATGTTA 60.041 37.037 0.00 0.00 0.00 2.41
1934 4304 8.918202 TTGGTAAGTTTTCAGTGAGATGTTAT 57.082 30.769 0.00 0.00 0.00 1.89
1935 4305 8.547967 TGGTAAGTTTTCAGTGAGATGTTATC 57.452 34.615 0.00 0.00 0.00 1.75
1936 4306 8.154203 TGGTAAGTTTTCAGTGAGATGTTATCA 58.846 33.333 0.00 0.00 0.00 2.15
1937 4307 8.660373 GGTAAGTTTTCAGTGAGATGTTATCAG 58.340 37.037 0.00 0.00 0.00 2.90
1938 4308 9.424319 GTAAGTTTTCAGTGAGATGTTATCAGA 57.576 33.333 0.00 0.00 0.00 3.27
1939 4309 8.908786 AAGTTTTCAGTGAGATGTTATCAGAA 57.091 30.769 0.00 0.00 0.00 3.02
1940 4310 8.908786 AGTTTTCAGTGAGATGTTATCAGAAA 57.091 30.769 0.00 0.00 0.00 2.52
1992 4362 9.293404 ACTTTATCCTAAAAACAAAGTACTCCC 57.707 33.333 0.00 0.00 37.60 4.30
1993 4363 9.516546 CTTTATCCTAAAAACAAAGTACTCCCT 57.483 33.333 0.00 0.00 0.00 4.20
1994 4364 9.511272 TTTATCCTAAAAACAAAGTACTCCCTC 57.489 33.333 0.00 0.00 0.00 4.30
1995 4365 5.872963 TCCTAAAAACAAAGTACTCCCTCC 58.127 41.667 0.00 0.00 0.00 4.30
1996 4366 4.694037 CCTAAAAACAAAGTACTCCCTCCG 59.306 45.833 0.00 0.00 0.00 4.63
1997 4367 3.851458 AAAACAAAGTACTCCCTCCGT 57.149 42.857 0.00 0.00 0.00 4.69
1998 4368 3.397849 AAACAAAGTACTCCCTCCGTC 57.602 47.619 0.00 0.00 0.00 4.79
1999 4369 2.305858 ACAAAGTACTCCCTCCGTCT 57.694 50.000 0.00 0.00 0.00 4.18
2000 4370 2.606378 ACAAAGTACTCCCTCCGTCTT 58.394 47.619 0.00 0.00 0.00 3.01
2001 4371 3.771216 ACAAAGTACTCCCTCCGTCTTA 58.229 45.455 0.00 0.00 0.00 2.10
2002 4372 4.154942 ACAAAGTACTCCCTCCGTCTTAA 58.845 43.478 0.00 0.00 0.00 1.85
2003 4373 4.590222 ACAAAGTACTCCCTCCGTCTTAAA 59.410 41.667 0.00 0.00 0.00 1.52
2004 4374 5.070847 ACAAAGTACTCCCTCCGTCTTAAAA 59.929 40.000 0.00 0.00 0.00 1.52
2005 4375 6.171213 CAAAGTACTCCCTCCGTCTTAAAAT 58.829 40.000 0.00 0.00 0.00 1.82
2006 4376 6.370186 AAGTACTCCCTCCGTCTTAAAATT 57.630 37.500 0.00 0.00 0.00 1.82
2007 4377 6.370186 AGTACTCCCTCCGTCTTAAAATTT 57.630 37.500 0.00 0.00 0.00 1.82
2008 4378 6.776744 AGTACTCCCTCCGTCTTAAAATTTT 58.223 36.000 8.75 8.75 0.00 1.82
2009 4379 7.229308 AGTACTCCCTCCGTCTTAAAATTTTT 58.771 34.615 9.06 0.00 0.00 1.94
2010 4380 6.327279 ACTCCCTCCGTCTTAAAATTTTTG 57.673 37.500 9.06 3.23 0.00 2.44
2011 4381 5.831525 ACTCCCTCCGTCTTAAAATTTTTGT 59.168 36.000 9.06 0.00 0.00 2.83
2012 4382 6.016527 ACTCCCTCCGTCTTAAAATTTTTGTC 60.017 38.462 9.06 0.62 0.00 3.18
2013 4383 6.066032 TCCCTCCGTCTTAAAATTTTTGTCT 58.934 36.000 9.06 0.00 0.00 3.41
2014 4384 6.548251 TCCCTCCGTCTTAAAATTTTTGTCTT 59.452 34.615 9.06 0.00 0.00 3.01
2015 4385 7.720515 TCCCTCCGTCTTAAAATTTTTGTCTTA 59.279 33.333 9.06 0.00 0.00 2.10
2016 4386 7.806487 CCCTCCGTCTTAAAATTTTTGTCTTAC 59.194 37.037 9.06 0.00 0.00 2.34
2017 4387 8.347035 CCTCCGTCTTAAAATTTTTGTCTTACA 58.653 33.333 9.06 0.00 0.00 2.41
2018 4388 9.893305 CTCCGTCTTAAAATTTTTGTCTTACAT 57.107 29.630 9.06 0.00 0.00 2.29
2051 4421 9.857656 AAATATGGATGTATCAAGTCATGTCTT 57.142 29.630 0.00 0.00 0.00 3.01
2054 4424 7.423844 TGGATGTATCAAGTCATGTCTTAGT 57.576 36.000 4.85 0.52 0.00 2.24
2055 4425 8.533569 TGGATGTATCAAGTCATGTCTTAGTA 57.466 34.615 4.85 0.00 0.00 1.82
2056 4426 9.147732 TGGATGTATCAAGTCATGTCTTAGTAT 57.852 33.333 4.85 3.09 0.00 2.12
2057 4427 9.988815 GGATGTATCAAGTCATGTCTTAGTATT 57.011 33.333 4.85 0.00 0.00 1.89
2068 4438 9.776158 GTCATGTCTTAGTATTAGATACATCCG 57.224 37.037 0.00 0.00 38.21 4.18
2069 4439 9.516546 TCATGTCTTAGTATTAGATACATCCGT 57.483 33.333 0.00 0.00 38.21 4.69
2088 4458 9.095065 ACATCCGTATGTAGACAAATTTAAGAC 57.905 33.333 0.00 0.00 44.66 3.01
2089 4459 9.093970 CATCCGTATGTAGACAAATTTAAGACA 57.906 33.333 0.00 0.00 0.00 3.41
2090 4460 9.661563 ATCCGTATGTAGACAAATTTAAGACAA 57.338 29.630 0.00 0.00 0.00 3.18
2091 4461 9.146984 TCCGTATGTAGACAAATTTAAGACAAG 57.853 33.333 0.00 0.00 0.00 3.16
2092 4462 9.146984 CCGTATGTAGACAAATTTAAGACAAGA 57.853 33.333 0.00 0.00 0.00 3.02
2100 4470 9.546428 AGACAAATTTAAGACAAGAATTTTGGG 57.454 29.630 0.00 0.00 33.39 4.12
2101 4471 9.541143 GACAAATTTAAGACAAGAATTTTGGGA 57.459 29.630 0.00 0.00 33.39 4.37
2102 4472 9.325198 ACAAATTTAAGACAAGAATTTTGGGAC 57.675 29.630 0.00 0.00 33.39 4.46
2103 4473 8.487176 CAAATTTAAGACAAGAATTTTGGGACG 58.513 33.333 0.00 0.00 32.35 4.79
2104 4474 5.699097 TTAAGACAAGAATTTTGGGACGG 57.301 39.130 0.00 0.00 0.00 4.79
2105 4475 3.502123 AGACAAGAATTTTGGGACGGA 57.498 42.857 0.00 0.00 0.00 4.69
2106 4476 3.412386 AGACAAGAATTTTGGGACGGAG 58.588 45.455 0.00 0.00 0.00 4.63
2107 4477 2.488153 GACAAGAATTTTGGGACGGAGG 59.512 50.000 0.00 0.00 0.00 4.30
2108 4478 1.818674 CAAGAATTTTGGGACGGAGGG 59.181 52.381 0.00 0.00 0.00 4.30
2109 4479 1.368374 AGAATTTTGGGACGGAGGGA 58.632 50.000 0.00 0.00 0.00 4.20
2110 4480 1.282157 AGAATTTTGGGACGGAGGGAG 59.718 52.381 0.00 0.00 0.00 4.30
2111 4481 1.004394 GAATTTTGGGACGGAGGGAGT 59.996 52.381 0.00 0.00 0.00 3.85
2112 4482 1.961133 ATTTTGGGACGGAGGGAGTA 58.039 50.000 0.00 0.00 0.00 2.59
2113 4483 1.732117 TTTTGGGACGGAGGGAGTAA 58.268 50.000 0.00 0.00 0.00 2.24
2114 4484 1.961133 TTTGGGACGGAGGGAGTAAT 58.039 50.000 0.00 0.00 0.00 1.89
2115 4485 2.852714 TTGGGACGGAGGGAGTAATA 57.147 50.000 0.00 0.00 0.00 0.98
2116 4486 2.852714 TGGGACGGAGGGAGTAATAA 57.147 50.000 0.00 0.00 0.00 1.40
2117 4487 2.674420 TGGGACGGAGGGAGTAATAAG 58.326 52.381 0.00 0.00 0.00 1.73
2118 4488 2.023695 TGGGACGGAGGGAGTAATAAGT 60.024 50.000 0.00 0.00 0.00 2.24
2119 4489 3.036819 GGGACGGAGGGAGTAATAAGTT 58.963 50.000 0.00 0.00 0.00 2.66
2120 4490 3.069300 GGGACGGAGGGAGTAATAAGTTC 59.931 52.174 0.00 0.00 0.00 3.01
2121 4491 3.703052 GGACGGAGGGAGTAATAAGTTCA 59.297 47.826 0.00 0.00 0.00 3.18
2122 4492 4.441217 GGACGGAGGGAGTAATAAGTTCAC 60.441 50.000 0.00 0.00 0.00 3.18
2123 4493 3.450096 ACGGAGGGAGTAATAAGTTCACC 59.550 47.826 0.00 0.00 0.00 4.02
2124 4494 3.705072 CGGAGGGAGTAATAAGTTCACCT 59.295 47.826 0.00 0.00 0.00 4.00
2125 4495 4.161754 CGGAGGGAGTAATAAGTTCACCTT 59.838 45.833 0.00 0.00 37.17 3.50
2126 4496 5.338137 CGGAGGGAGTAATAAGTTCACCTTT 60.338 44.000 0.00 0.00 34.46 3.11
2127 4497 6.482524 GGAGGGAGTAATAAGTTCACCTTTT 58.517 40.000 0.00 0.00 34.46 2.27
2128 4498 6.946583 GGAGGGAGTAATAAGTTCACCTTTTT 59.053 38.462 0.00 0.00 34.46 1.94
2204 4574 3.003480 CACGAGGAGGAACAAGGATTTC 58.997 50.000 0.00 0.00 0.00 2.17
2215 4585 1.665679 CAAGGATTTCGACATCACGGG 59.334 52.381 13.28 0.00 0.00 5.28
2224 4594 6.988622 TTTCGACATCACGGGTATTATTTT 57.011 33.333 0.00 0.00 0.00 1.82
2363 4800 2.115291 GGCTTCCTTCATCACCGGC 61.115 63.158 0.00 0.00 0.00 6.13
2412 4849 7.277098 GTCGAACCATTAGTGCTTAATTAGTCA 59.723 37.037 0.00 0.00 29.37 3.41
2439 4876 1.401409 CCGCCACTGCATAAGTTGTTG 60.401 52.381 0.00 0.00 36.83 3.33
2487 4924 5.923733 ATGTGTGTTGGGAGTAAACAAAA 57.076 34.783 0.00 0.00 39.14 2.44
2494 4931 8.192110 TGTGTTGGGAGTAAACAAAAATTAGTC 58.808 33.333 0.00 0.00 39.14 2.59
2532 4969 5.585047 GCCAACTAGGAGTAACAATAACTGG 59.415 44.000 0.00 0.00 41.22 4.00
2541 4978 6.441093 AGTAACAATAACTGGCATCATGTG 57.559 37.500 0.00 0.00 0.00 3.21
2566 5003 6.075046 GCAGTACATGTATGTATGTGTGTACG 60.075 42.308 9.18 5.06 44.25 3.67
2597 5700 6.806249 GTGTGTGTATGTGGTGATAATTTTGG 59.194 38.462 0.00 0.00 0.00 3.28
2676 5780 7.944554 AGGAATTCAGAAGACCTTACAAATCAA 59.055 33.333 7.93 0.00 0.00 2.57
2723 5827 5.665459 ACAACTATCTATCTTGTCCTGTGC 58.335 41.667 0.00 0.00 0.00 4.57
2728 5832 3.865446 TCTATCTTGTCCTGTGCATGTG 58.135 45.455 0.00 0.00 0.00 3.21
2732 5836 1.267806 CTTGTCCTGTGCATGTGGAAC 59.732 52.381 6.82 3.70 37.35 3.62
2763 5867 2.175715 AGAAGCCCATGTTATCCCCTTC 59.824 50.000 0.00 0.00 0.00 3.46
2785 5889 7.361713 CCTTCAATAAAAACTAGATCGGCAACA 60.362 37.037 0.00 0.00 0.00 3.33
2787 5891 6.653320 TCAATAAAAACTAGATCGGCAACACT 59.347 34.615 0.00 0.00 0.00 3.55
2789 5893 3.963428 AAACTAGATCGGCAACACTCT 57.037 42.857 0.00 0.00 0.00 3.24
2793 5897 2.839486 AGATCGGCAACACTCTTTGA 57.161 45.000 0.00 0.00 0.00 2.69
2804 5908 0.393077 ACTCTTTGACGTGAGGGTGG 59.607 55.000 0.00 0.00 34.84 4.61
2821 5925 3.808036 GCGGTGCCAACGATATGT 58.192 55.556 6.20 0.00 0.00 2.29
2827 5931 2.477863 GGTGCCAACGATATGTTCAAGC 60.478 50.000 0.00 0.00 39.29 4.01
2828 5932 1.742831 TGCCAACGATATGTTCAAGCC 59.257 47.619 0.00 0.00 39.29 4.35
2843 5947 1.879380 CAAGCCGTGGAAGATCAAACA 59.121 47.619 0.00 0.00 0.00 2.83
2852 5956 3.129813 TGGAAGATCAAACAGCATGATGC 59.870 43.478 11.67 9.89 45.46 3.91
2920 6070 1.726791 ACATCATCGAGTTCAACACGC 59.273 47.619 2.06 0.00 32.32 5.34
3046 6199 6.992664 ATATGAGCAGGAACATAAGAGAGT 57.007 37.500 0.00 0.00 33.63 3.24
3051 6205 7.450074 TGAGCAGGAACATAAGAGAGTAAAAA 58.550 34.615 0.00 0.00 0.00 1.94
3087 6242 7.596995 GCAATAGAGAGATAAAACTACGATGCT 59.403 37.037 0.00 0.00 0.00 3.79
3092 6266 9.509956 AGAGAGATAAAACTACGATGCTATAGT 57.490 33.333 0.84 0.00 32.93 2.12
3107 6281 8.406297 CGATGCTATAGTTAGGCATACAATAGA 58.594 37.037 0.84 0.00 45.14 1.98
3121 6295 7.355778 GCATACAATAGATAGCTTGGTTCAAC 58.644 38.462 0.00 0.00 0.00 3.18
3141 6315 0.040058 TGCCTCCATGAGTGCCATTT 59.960 50.000 0.00 0.00 31.94 2.32
3145 6319 3.824133 CCTCCATGAGTGCCATTTCATA 58.176 45.455 0.00 0.00 32.96 2.15
3156 6330 4.155462 GTGCCATTTCATATGAGATGCGAT 59.845 41.667 24.23 4.90 35.89 4.58
3198 6385 1.063492 TGTCCTACTTCCGGATGCCTA 60.063 52.381 16.84 2.76 32.25 3.93
3387 6576 4.437390 GCATCCTTTTGACACTACCAATCG 60.437 45.833 0.00 0.00 0.00 3.34
3393 6582 6.425721 CCTTTTGACACTACCAATCGAAAGTA 59.574 38.462 10.71 0.00 40.22 2.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.654022 TTGAGAAGGTGTTTCTTAATGGTTT 57.346 32.000 0.00 0.00 46.12 3.27
2 3 7.654022 TTTTGAGAAGGTGTTTCTTAATGGT 57.346 32.000 0.00 0.00 46.12 3.55
3 4 9.546428 AATTTTTGAGAAGGTGTTTCTTAATGG 57.454 29.630 0.00 0.00 46.12 3.16
8 9 9.500785 TTTTCAATTTTTGAGAAGGTGTTTCTT 57.499 25.926 0.00 0.00 46.12 2.52
10 11 9.706846 CATTTTCAATTTTTGAGAAGGTGTTTC 57.293 29.630 0.73 0.00 41.38 2.78
11 12 9.447157 TCATTTTCAATTTTTGAGAAGGTGTTT 57.553 25.926 5.48 0.00 41.38 2.83
12 13 8.882736 GTCATTTTCAATTTTTGAGAAGGTGTT 58.117 29.630 5.48 0.00 41.38 3.32
13 14 8.040132 TGTCATTTTCAATTTTTGAGAAGGTGT 58.960 29.630 5.48 0.00 41.38 4.16
14 15 8.422973 TGTCATTTTCAATTTTTGAGAAGGTG 57.577 30.769 5.48 0.00 41.38 4.00
15 16 9.617523 AATGTCATTTTCAATTTTTGAGAAGGT 57.382 25.926 0.00 0.00 41.38 3.50
44 45 7.406104 AGAATACTTTAGCACCTTCAAGGATT 58.594 34.615 11.59 0.00 37.67 3.01
45 46 6.963322 AGAATACTTTAGCACCTTCAAGGAT 58.037 36.000 11.59 0.00 37.67 3.24
46 47 6.374417 AGAATACTTTAGCACCTTCAAGGA 57.626 37.500 11.59 0.00 37.67 3.36
47 48 6.094186 GGAAGAATACTTTAGCACCTTCAAGG 59.906 42.308 0.22 0.22 37.70 3.61
48 49 6.881602 AGGAAGAATACTTTAGCACCTTCAAG 59.118 38.462 0.00 0.00 36.39 3.02
49 50 6.655003 CAGGAAGAATACTTTAGCACCTTCAA 59.345 38.462 0.00 0.00 36.39 2.69
50 51 6.173339 CAGGAAGAATACTTTAGCACCTTCA 58.827 40.000 0.00 0.00 36.39 3.02
51 52 5.065346 GCAGGAAGAATACTTTAGCACCTTC 59.935 44.000 0.00 0.00 36.39 3.46
52 53 4.944317 GCAGGAAGAATACTTTAGCACCTT 59.056 41.667 0.00 0.00 36.39 3.50
53 54 4.019321 TGCAGGAAGAATACTTTAGCACCT 60.019 41.667 0.00 0.00 36.39 4.00
54 55 4.261801 TGCAGGAAGAATACTTTAGCACC 58.738 43.478 0.00 0.00 36.39 5.01
55 56 5.880054 TTGCAGGAAGAATACTTTAGCAC 57.120 39.130 0.00 0.00 37.26 4.40
56 57 6.490040 AGTTTTGCAGGAAGAATACTTTAGCA 59.510 34.615 0.00 0.00 36.39 3.49
57 58 6.914259 AGTTTTGCAGGAAGAATACTTTAGC 58.086 36.000 0.00 0.00 36.39 3.09
58 59 9.220767 ACTAGTTTTGCAGGAAGAATACTTTAG 57.779 33.333 0.00 0.00 36.39 1.85
59 60 9.216117 GACTAGTTTTGCAGGAAGAATACTTTA 57.784 33.333 0.00 0.00 36.39 1.85
60 61 7.719633 TGACTAGTTTTGCAGGAAGAATACTTT 59.280 33.333 0.00 0.00 36.39 2.66
61 62 7.224297 TGACTAGTTTTGCAGGAAGAATACTT 58.776 34.615 0.00 0.00 39.24 2.24
62 63 6.769512 TGACTAGTTTTGCAGGAAGAATACT 58.230 36.000 0.00 0.00 0.00 2.12
63 64 6.651225 ACTGACTAGTTTTGCAGGAAGAATAC 59.349 38.462 12.47 0.00 31.66 1.89
64 65 6.769512 ACTGACTAGTTTTGCAGGAAGAATA 58.230 36.000 12.47 0.00 31.66 1.75
65 66 5.625150 ACTGACTAGTTTTGCAGGAAGAAT 58.375 37.500 12.47 0.00 31.66 2.40
66 67 5.036117 ACTGACTAGTTTTGCAGGAAGAA 57.964 39.130 12.47 0.00 31.66 2.52
67 68 4.689612 ACTGACTAGTTTTGCAGGAAGA 57.310 40.909 12.47 0.00 31.66 2.87
68 69 5.542779 AGTACTGACTAGTTTTGCAGGAAG 58.457 41.667 12.47 0.00 38.36 3.46
69 70 5.510861 GGAGTACTGACTAGTTTTGCAGGAA 60.511 44.000 0.00 0.20 38.36 3.36
70 71 4.021368 GGAGTACTGACTAGTTTTGCAGGA 60.021 45.833 0.00 2.74 38.36 3.86
71 72 4.246458 GGAGTACTGACTAGTTTTGCAGG 58.754 47.826 0.00 0.00 38.36 4.85
112 113 8.669946 TTGACTTCACACAAATCTAATACACA 57.330 30.769 0.00 0.00 0.00 3.72
114 115 9.337396 AGTTTGACTTCACACAAATCTAATACA 57.663 29.630 0.00 0.00 38.09 2.29
126 127 4.923281 ACTTTGCAAAGTTTGACTTCACAC 59.077 37.500 33.85 0.00 46.52 3.82
301 302 9.899226 CCCTTCTGTTCTTTTAAAGTTTATCTG 57.101 33.333 4.53 0.00 0.00 2.90
302 303 9.862149 TCCCTTCTGTTCTTTTAAAGTTTATCT 57.138 29.630 4.53 0.00 0.00 1.98
304 305 9.642343 ACTCCCTTCTGTTCTTTTAAAGTTTAT 57.358 29.630 4.53 0.00 0.00 1.40
306 307 7.956328 ACTCCCTTCTGTTCTTTTAAAGTTT 57.044 32.000 4.53 0.00 0.00 2.66
307 308 8.050930 TGTACTCCCTTCTGTTCTTTTAAAGTT 58.949 33.333 4.53 0.00 0.00 2.66
308 309 7.571025 TGTACTCCCTTCTGTTCTTTTAAAGT 58.429 34.615 4.53 0.00 0.00 2.66
309 310 8.622948 ATGTACTCCCTTCTGTTCTTTTAAAG 57.377 34.615 0.00 0.00 0.00 1.85
310 311 8.846211 CAATGTACTCCCTTCTGTTCTTTTAAA 58.154 33.333 0.00 0.00 0.00 1.52
311 312 8.215050 TCAATGTACTCCCTTCTGTTCTTTTAA 58.785 33.333 0.00 0.00 0.00 1.52
312 313 7.741785 TCAATGTACTCCCTTCTGTTCTTTTA 58.258 34.615 0.00 0.00 0.00 1.52
313 314 6.601332 TCAATGTACTCCCTTCTGTTCTTTT 58.399 36.000 0.00 0.00 0.00 2.27
314 315 6.187727 TCAATGTACTCCCTTCTGTTCTTT 57.812 37.500 0.00 0.00 0.00 2.52
315 316 5.825593 TCAATGTACTCCCTTCTGTTCTT 57.174 39.130 0.00 0.00 0.00 2.52
316 317 5.723887 AGATCAATGTACTCCCTTCTGTTCT 59.276 40.000 0.00 0.00 0.00 3.01
317 318 5.983540 AGATCAATGTACTCCCTTCTGTTC 58.016 41.667 0.00 0.00 0.00 3.18
318 319 6.380079 AAGATCAATGTACTCCCTTCTGTT 57.620 37.500 0.00 0.00 0.00 3.16
319 320 6.407525 GCTAAGATCAATGTACTCCCTTCTGT 60.408 42.308 0.00 0.00 0.00 3.41
320 321 5.988561 GCTAAGATCAATGTACTCCCTTCTG 59.011 44.000 0.00 0.00 0.00 3.02
321 322 5.902431 AGCTAAGATCAATGTACTCCCTTCT 59.098 40.000 0.00 0.00 0.00 2.85
322 323 5.988561 CAGCTAAGATCAATGTACTCCCTTC 59.011 44.000 0.00 0.00 0.00 3.46
323 324 5.426833 ACAGCTAAGATCAATGTACTCCCTT 59.573 40.000 0.00 0.00 0.00 3.95
324 325 4.965532 ACAGCTAAGATCAATGTACTCCCT 59.034 41.667 0.00 0.00 0.00 4.20
325 326 5.069781 AGACAGCTAAGATCAATGTACTCCC 59.930 44.000 0.00 0.00 0.00 4.30
326 327 6.155475 AGACAGCTAAGATCAATGTACTCC 57.845 41.667 0.00 0.00 0.00 3.85
327 328 8.795786 CTAAGACAGCTAAGATCAATGTACTC 57.204 38.462 0.00 0.00 0.00 2.59
365 366 4.164204 CCCTCTTTCCCTAAGCTAGCTAT 58.836 47.826 19.70 10.93 33.66 2.97
366 367 3.577919 CCCTCTTTCCCTAAGCTAGCTA 58.422 50.000 19.70 5.71 33.66 3.32
367 368 2.403561 CCCTCTTTCCCTAAGCTAGCT 58.596 52.381 12.68 12.68 33.66 3.32
368 369 1.202710 GCCCTCTTTCCCTAAGCTAGC 60.203 57.143 6.62 6.62 33.66 3.42
369 370 2.119495 TGCCCTCTTTCCCTAAGCTAG 58.881 52.381 0.00 0.00 33.66 3.42
370 371 2.263895 TGCCCTCTTTCCCTAAGCTA 57.736 50.000 0.00 0.00 33.66 3.32
371 372 1.601248 ATGCCCTCTTTCCCTAAGCT 58.399 50.000 0.00 0.00 33.66 3.74
372 373 2.302260 GAATGCCCTCTTTCCCTAAGC 58.698 52.381 0.00 0.00 33.66 3.09
373 374 2.170607 TCGAATGCCCTCTTTCCCTAAG 59.829 50.000 0.00 0.00 35.04 2.18
375 376 1.762957 CTCGAATGCCCTCTTTCCCTA 59.237 52.381 0.00 0.00 0.00 3.53
376 377 0.543749 CTCGAATGCCCTCTTTCCCT 59.456 55.000 0.00 0.00 0.00 4.20
377 378 0.464554 CCTCGAATGCCCTCTTTCCC 60.465 60.000 0.00 0.00 0.00 3.97
380 381 0.543749 CTCCCTCGAATGCCCTCTTT 59.456 55.000 0.00 0.00 0.00 2.52
382 383 1.764054 CCTCCCTCGAATGCCCTCT 60.764 63.158 0.00 0.00 0.00 3.69
386 387 4.570874 GCCCCTCCCTCGAATGCC 62.571 72.222 0.00 0.00 0.00 4.40
388 389 4.241555 CCGCCCCTCCCTCGAATG 62.242 72.222 0.00 0.00 0.00 2.67
432 440 0.758734 TCATCGTGGCCAATCCTAGG 59.241 55.000 7.24 0.82 35.26 3.02
433 441 2.158900 AGTTCATCGTGGCCAATCCTAG 60.159 50.000 7.24 0.00 35.26 3.02
434 442 1.837439 AGTTCATCGTGGCCAATCCTA 59.163 47.619 7.24 0.00 35.26 2.94
435 443 0.620556 AGTTCATCGTGGCCAATCCT 59.379 50.000 7.24 0.00 35.26 3.24
442 450 1.599542 GCCTTATCAGTTCATCGTGGC 59.400 52.381 0.00 0.00 0.00 5.01
446 454 2.791560 CGTCAGCCTTATCAGTTCATCG 59.208 50.000 0.00 0.00 0.00 3.84
464 472 2.048127 AGTTGAGCCGCCTTCGTC 60.048 61.111 0.00 0.00 0.00 4.20
468 476 2.262915 CTCGAGTTGAGCCGCCTT 59.737 61.111 3.62 0.00 38.03 4.35
476 484 1.737735 CACATGCCGCTCGAGTTGA 60.738 57.895 15.13 0.00 0.00 3.18
477 485 2.780643 CACATGCCGCTCGAGTTG 59.219 61.111 15.13 7.07 0.00 3.16
478 486 3.121030 GCACATGCCGCTCGAGTT 61.121 61.111 15.13 0.00 34.31 3.01
479 487 4.377708 TGCACATGCCGCTCGAGT 62.378 61.111 15.13 0.00 41.18 4.18
480 488 3.857854 GTGCACATGCCGCTCGAG 61.858 66.667 13.17 8.45 41.18 4.04
519 534 2.977178 CTCAGCCCGAGCACTTCT 59.023 61.111 0.00 0.00 43.56 2.85
689 705 0.596083 CCACGATAGGAGAGCGCTTG 60.596 60.000 13.26 1.42 41.93 4.01
691 707 2.851071 GCCACGATAGGAGAGCGCT 61.851 63.158 11.27 11.27 41.93 5.92
737 753 2.652530 CAGCATGCCCTTTTGCGT 59.347 55.556 15.66 0.00 43.61 5.24
776 807 5.422214 AAAATATCTTGGTCAGAGGTCGT 57.578 39.130 0.00 0.00 33.87 4.34
779 810 5.510430 GGGAAAAATATCTTGGTCAGAGGT 58.490 41.667 0.00 0.00 33.87 3.85
788 819 7.227512 AGAGACATAAGCGGGAAAAATATCTTG 59.772 37.037 0.00 0.00 0.00 3.02
798 829 3.628008 TGAGTAGAGACATAAGCGGGAA 58.372 45.455 0.00 0.00 0.00 3.97
799 830 3.215151 CTGAGTAGAGACATAAGCGGGA 58.785 50.000 0.00 0.00 0.00 5.14
805 836 4.402793 GTGGCTTCCTGAGTAGAGACATAA 59.597 45.833 0.00 0.00 28.43 1.90
806 837 3.954904 GTGGCTTCCTGAGTAGAGACATA 59.045 47.826 0.00 0.00 28.43 2.29
807 838 2.763448 GTGGCTTCCTGAGTAGAGACAT 59.237 50.000 0.00 0.00 28.43 3.06
871 903 0.711670 GCGACGCTGATAACGTTGAA 59.288 50.000 13.73 0.00 45.74 2.69
913 950 4.391155 AGTTGGTTGACGTTTATAGCCAA 58.609 39.130 0.00 0.00 32.85 4.52
924 961 1.588674 TTGGCACTAGTTGGTTGACG 58.411 50.000 0.00 0.00 0.00 4.35
960 997 3.270877 AGATGTCACCGTATTTGCTTCC 58.729 45.455 0.00 0.00 0.00 3.46
964 1001 3.553511 CAGAGAGATGTCACCGTATTTGC 59.446 47.826 0.00 0.00 0.00 3.68
970 1007 1.189752 ATGCAGAGAGATGTCACCGT 58.810 50.000 0.00 0.00 0.00 4.83
1069 1109 1.271840 TACCCGATCCCTTTGCTGCT 61.272 55.000 0.00 0.00 0.00 4.24
1307 2189 4.462508 ACAGAAGACACACATGATCGAT 57.537 40.909 0.00 0.00 0.00 3.59
1308 2190 3.942130 ACAGAAGACACACATGATCGA 57.058 42.857 0.00 0.00 0.00 3.59
1309 2191 5.501413 GCAATACAGAAGACACACATGATCG 60.501 44.000 0.00 0.00 0.00 3.69
1310 2192 5.583854 AGCAATACAGAAGACACACATGATC 59.416 40.000 0.00 0.00 0.00 2.92
1716 3550 3.248024 ACTCCTGGTCAGTTGGTTCATA 58.752 45.455 0.00 0.00 0.00 2.15
1731 3565 1.672356 CTCGGTGGCCAAACTCCTG 60.672 63.158 7.24 0.00 0.00 3.86
1782 3616 2.622977 GGTTGTGATAAATCCTGGGGCA 60.623 50.000 0.00 0.00 0.00 5.36
1827 3661 9.886132 CCATTAATTAGGTTACACAAGTACTCT 57.114 33.333 0.00 0.00 0.00 3.24
1828 3662 9.880157 TCCATTAATTAGGTTACACAAGTACTC 57.120 33.333 0.00 0.00 0.00 2.59
1829 3663 9.886132 CTCCATTAATTAGGTTACACAAGTACT 57.114 33.333 0.00 0.00 0.00 2.73
1830 3664 9.662947 ACTCCATTAATTAGGTTACACAAGTAC 57.337 33.333 0.00 0.00 0.00 2.73
1832 3666 9.886132 CTACTCCATTAATTAGGTTACACAAGT 57.114 33.333 0.00 0.00 0.00 3.16
1833 3667 8.827677 GCTACTCCATTAATTAGGTTACACAAG 58.172 37.037 0.00 0.00 0.00 3.16
1846 3680 9.643693 CAAGAAAACATTTGCTACTCCATTAAT 57.356 29.630 0.00 0.00 0.00 1.40
1882 4252 6.015434 CCTGGTTAAAAATTAGTGAGGTGCTT 60.015 38.462 0.00 0.00 0.00 3.91
1889 4259 6.339587 CCAAGCCTGGTTAAAAATTAGTGA 57.660 37.500 0.00 0.00 38.00 3.41
1914 4284 8.908786 TTCTGATAACATCTCACTGAAAACTT 57.091 30.769 0.00 0.00 0.00 2.66
1915 4285 8.908786 TTTCTGATAACATCTCACTGAAAACT 57.091 30.769 0.00 0.00 0.00 2.66
1916 4286 9.950680 TTTTTCTGATAACATCTCACTGAAAAC 57.049 29.630 0.00 0.00 37.75 2.43
1918 4288 9.342308 ACTTTTTCTGATAACATCTCACTGAAA 57.658 29.630 0.00 0.00 0.00 2.69
1919 4289 8.908786 ACTTTTTCTGATAACATCTCACTGAA 57.091 30.769 0.00 0.00 0.00 3.02
1920 4290 8.908786 AACTTTTTCTGATAACATCTCACTGA 57.091 30.769 0.00 0.00 0.00 3.41
1921 4291 9.956720 AAAACTTTTTCTGATAACATCTCACTG 57.043 29.630 0.00 0.00 0.00 3.66
1988 4358 6.206829 AGACAAAAATTTTAAGACGGAGGGAG 59.793 38.462 3.34 0.00 0.00 4.30
1990 4360 6.327279 AGACAAAAATTTTAAGACGGAGGG 57.673 37.500 3.34 0.00 0.00 4.30
1992 4362 9.893305 ATGTAAGACAAAAATTTTAAGACGGAG 57.107 29.630 3.34 0.00 0.00 4.63
2025 4395 9.857656 AAGACATGACTTGATACATCCATATTT 57.142 29.630 9.67 0.00 0.00 1.40
2028 4398 9.147732 ACTAAGACATGACTTGATACATCCATA 57.852 33.333 18.80 0.00 0.00 2.74
2029 4399 8.027524 ACTAAGACATGACTTGATACATCCAT 57.972 34.615 18.80 0.00 0.00 3.41
2030 4400 7.423844 ACTAAGACATGACTTGATACATCCA 57.576 36.000 18.80 0.00 0.00 3.41
2031 4401 9.988815 AATACTAAGACATGACTTGATACATCC 57.011 33.333 18.80 0.00 0.00 3.51
2042 4412 9.776158 CGGATGTATCTAATACTAAGACATGAC 57.224 37.037 0.00 0.00 36.70 3.06
2043 4413 9.516546 ACGGATGTATCTAATACTAAGACATGA 57.483 33.333 0.00 0.00 36.70 3.07
2052 4422 9.955102 TGTCTACATACGGATGTATCTAATACT 57.045 33.333 20.64 0.00 45.42 2.12
2063 4433 9.093970 TGTCTTAAATTTGTCTACATACGGATG 57.906 33.333 5.94 5.94 39.16 3.51
2064 4434 9.661563 TTGTCTTAAATTTGTCTACATACGGAT 57.338 29.630 0.00 0.00 0.00 4.18
2065 4435 9.146984 CTTGTCTTAAATTTGTCTACATACGGA 57.853 33.333 0.00 0.00 0.00 4.69
2066 4436 9.146984 TCTTGTCTTAAATTTGTCTACATACGG 57.853 33.333 0.00 0.00 0.00 4.02
2074 4444 9.546428 CCCAAAATTCTTGTCTTAAATTTGTCT 57.454 29.630 0.00 0.00 33.95 3.41
2075 4445 9.541143 TCCCAAAATTCTTGTCTTAAATTTGTC 57.459 29.630 0.00 0.00 33.95 3.18
2076 4446 9.325198 GTCCCAAAATTCTTGTCTTAAATTTGT 57.675 29.630 0.00 0.00 33.95 2.83
2077 4447 8.487176 CGTCCCAAAATTCTTGTCTTAAATTTG 58.513 33.333 0.00 0.00 33.95 2.32
2078 4448 7.655732 CCGTCCCAAAATTCTTGTCTTAAATTT 59.344 33.333 0.00 0.00 34.86 1.82
2079 4449 7.014808 TCCGTCCCAAAATTCTTGTCTTAAATT 59.985 33.333 0.00 0.00 0.00 1.82
2080 4450 6.492087 TCCGTCCCAAAATTCTTGTCTTAAAT 59.508 34.615 0.00 0.00 0.00 1.40
2081 4451 5.828859 TCCGTCCCAAAATTCTTGTCTTAAA 59.171 36.000 0.00 0.00 0.00 1.52
2082 4452 5.378332 TCCGTCCCAAAATTCTTGTCTTAA 58.622 37.500 0.00 0.00 0.00 1.85
2083 4453 4.975631 TCCGTCCCAAAATTCTTGTCTTA 58.024 39.130 0.00 0.00 0.00 2.10
2084 4454 3.821033 CTCCGTCCCAAAATTCTTGTCTT 59.179 43.478 0.00 0.00 0.00 3.01
2085 4455 3.412386 CTCCGTCCCAAAATTCTTGTCT 58.588 45.455 0.00 0.00 0.00 3.41
2086 4456 2.488153 CCTCCGTCCCAAAATTCTTGTC 59.512 50.000 0.00 0.00 0.00 3.18
2087 4457 2.514803 CCTCCGTCCCAAAATTCTTGT 58.485 47.619 0.00 0.00 0.00 3.16
2088 4458 1.818674 CCCTCCGTCCCAAAATTCTTG 59.181 52.381 0.00 0.00 0.00 3.02
2089 4459 1.708551 TCCCTCCGTCCCAAAATTCTT 59.291 47.619 0.00 0.00 0.00 2.52
2090 4460 1.282157 CTCCCTCCGTCCCAAAATTCT 59.718 52.381 0.00 0.00 0.00 2.40
2091 4461 1.004394 ACTCCCTCCGTCCCAAAATTC 59.996 52.381 0.00 0.00 0.00 2.17
2092 4462 1.073098 ACTCCCTCCGTCCCAAAATT 58.927 50.000 0.00 0.00 0.00 1.82
2093 4463 1.961133 TACTCCCTCCGTCCCAAAAT 58.039 50.000 0.00 0.00 0.00 1.82
2094 4464 1.732117 TTACTCCCTCCGTCCCAAAA 58.268 50.000 0.00 0.00 0.00 2.44
2095 4465 1.961133 ATTACTCCCTCCGTCCCAAA 58.039 50.000 0.00 0.00 0.00 3.28
2096 4466 2.852714 TATTACTCCCTCCGTCCCAA 57.147 50.000 0.00 0.00 0.00 4.12
2097 4467 2.023695 ACTTATTACTCCCTCCGTCCCA 60.024 50.000 0.00 0.00 0.00 4.37
2098 4468 2.675583 ACTTATTACTCCCTCCGTCCC 58.324 52.381 0.00 0.00 0.00 4.46
2099 4469 3.703052 TGAACTTATTACTCCCTCCGTCC 59.297 47.826 0.00 0.00 0.00 4.79
2100 4470 4.441217 GGTGAACTTATTACTCCCTCCGTC 60.441 50.000 0.00 0.00 0.00 4.79
2101 4471 3.450096 GGTGAACTTATTACTCCCTCCGT 59.550 47.826 0.00 0.00 0.00 4.69
2102 4472 3.705072 AGGTGAACTTATTACTCCCTCCG 59.295 47.826 0.00 0.00 0.00 4.63
2103 4473 5.695424 AAGGTGAACTTATTACTCCCTCC 57.305 43.478 0.00 0.00 37.74 4.30
2104 4474 7.997773 AAAAAGGTGAACTTATTACTCCCTC 57.002 36.000 0.00 0.00 38.85 4.30
2126 4496 8.442374 AGTGAACTTATTACTACCCTGGAAAAA 58.558 33.333 0.00 0.00 0.00 1.94
2127 4497 7.981142 AGTGAACTTATTACTACCCTGGAAAA 58.019 34.615 0.00 0.00 0.00 2.29
2128 4498 7.563724 AGTGAACTTATTACTACCCTGGAAA 57.436 36.000 0.00 0.00 0.00 3.13
2129 4499 7.563724 AAGTGAACTTATTACTACCCTGGAA 57.436 36.000 0.00 0.00 33.79 3.53
2130 4500 7.563724 AAAGTGAACTTATTACTACCCTGGA 57.436 36.000 0.00 0.00 34.61 3.86
2131 4501 8.101419 AGAAAAGTGAACTTATTACTACCCTGG 58.899 37.037 0.00 0.00 34.61 4.45
2138 4508 9.944376 TCAGCATAGAAAAGTGAACTTATTACT 57.056 29.630 0.00 0.00 34.61 2.24
2143 4513 9.283768 TCATTTCAGCATAGAAAAGTGAACTTA 57.716 29.630 0.00 0.00 40.54 2.24
2144 4514 8.078596 GTCATTTCAGCATAGAAAAGTGAACTT 58.921 33.333 3.63 0.00 40.54 2.66
2145 4515 7.571983 CGTCATTTCAGCATAGAAAAGTGAACT 60.572 37.037 3.63 0.00 40.54 3.01
2162 4532 3.625313 TGCAAAGTGAACTCGTCATTTCA 59.375 39.130 0.00 0.00 38.90 2.69
2166 4536 1.526887 CGTGCAAAGTGAACTCGTCAT 59.473 47.619 0.00 0.00 38.90 3.06
2204 4574 5.294799 TCCAAAAATAATACCCGTGATGTCG 59.705 40.000 0.00 0.00 0.00 4.35
2224 4594 6.823182 CGTATCCATCTGCCAAATATATCCAA 59.177 38.462 0.00 0.00 0.00 3.53
2363 4800 1.517257 GTCGACGCAGATGACCTGG 60.517 63.158 0.00 0.00 43.13 4.45
2412 4849 0.469494 TATGCAGTGGCGGTGATGAT 59.531 50.000 0.00 0.00 45.35 2.45
2466 4903 5.723672 TTTTTGTTTACTCCCAACACACA 57.276 34.783 0.00 0.00 33.81 3.72
2494 4931 9.071276 ACTCCTAGTTGGCATCATTATTTATTG 57.929 33.333 0.00 0.00 35.26 1.90
2499 4936 7.573710 TGTTACTCCTAGTTGGCATCATTATT 58.426 34.615 0.00 0.00 35.26 1.40
2500 4937 7.136822 TGTTACTCCTAGTTGGCATCATTAT 57.863 36.000 0.00 0.00 35.26 1.28
2501 4938 6.553953 TGTTACTCCTAGTTGGCATCATTA 57.446 37.500 0.00 0.00 35.26 1.90
2541 4978 6.075046 CGTACACACATACATACATGTACTGC 60.075 42.308 7.96 0.00 45.11 4.40
2566 5003 2.473609 CACCACATACACACACGTACAC 59.526 50.000 0.00 0.00 0.00 2.90
2578 5681 9.174166 AGTAGTTCCAAAATTATCACCACATAC 57.826 33.333 0.00 0.00 0.00 2.39
2700 5804 5.187772 TGCACAGGACAAGATAGATAGTTGT 59.812 40.000 0.00 0.00 37.12 3.32
2701 5805 5.664457 TGCACAGGACAAGATAGATAGTTG 58.336 41.667 0.00 0.00 0.00 3.16
2702 5806 5.939764 TGCACAGGACAAGATAGATAGTT 57.060 39.130 0.00 0.00 0.00 2.24
2703 5807 5.365025 ACATGCACAGGACAAGATAGATAGT 59.635 40.000 0.00 0.00 0.00 2.12
2704 5808 5.695363 CACATGCACAGGACAAGATAGATAG 59.305 44.000 0.00 0.00 0.00 2.08
2723 5827 2.981560 GCACCCTGCGTTCCACATG 61.982 63.158 0.00 0.00 31.71 3.21
2763 5867 6.842163 AGTGTTGCCGATCTAGTTTTTATTG 58.158 36.000 0.00 0.00 0.00 1.90
2775 5879 1.126846 CGTCAAAGAGTGTTGCCGATC 59.873 52.381 0.00 0.00 0.00 3.69
2785 5889 0.393077 CCACCCTCACGTCAAAGAGT 59.607 55.000 0.00 0.00 0.00 3.24
2787 5891 1.070786 GCCACCCTCACGTCAAAGA 59.929 57.895 0.00 0.00 0.00 2.52
2789 5893 2.280524 CGCCACCCTCACGTCAAA 60.281 61.111 0.00 0.00 0.00 2.69
2804 5908 0.027586 GAACATATCGTTGGCACCGC 59.972 55.000 0.00 0.00 38.19 5.68
2809 5913 1.268032 CGGCTTGAACATATCGTTGGC 60.268 52.381 0.00 0.00 38.19 4.52
2814 5918 1.934589 TCCACGGCTTGAACATATCG 58.065 50.000 0.00 0.00 0.00 2.92
2821 5925 2.552315 GTTTGATCTTCCACGGCTTGAA 59.448 45.455 0.00 0.00 0.00 2.69
2827 5931 1.522668 TGCTGTTTGATCTTCCACGG 58.477 50.000 0.00 0.00 0.00 4.94
2828 5932 2.743664 TCATGCTGTTTGATCTTCCACG 59.256 45.455 0.00 0.00 0.00 4.94
2843 5947 5.628130 ACCTTCATACTAATGCATCATGCT 58.372 37.500 11.84 0.00 45.31 3.79
2882 6032 7.589587 CGATGATGTTACTCTTCTGATACAGTC 59.410 40.741 0.00 0.00 32.61 3.51
2889 6039 6.151144 TGAACTCGATGATGTTACTCTTCTGA 59.849 38.462 0.00 0.00 0.00 3.27
2920 6070 8.908786 TGGGTTAGCTTTTATAATCTCATGAG 57.091 34.615 17.07 17.07 0.00 2.90
3020 6173 8.928448 ACTCTCTTATGTTCCTGCTCATATTAA 58.072 33.333 0.00 0.00 0.00 1.40
3046 6199 6.065374 TCTCTATTGCCACTGTTGGTTTTTA 58.935 36.000 0.00 0.00 45.98 1.52
3051 6205 2.906389 TCTCTCTATTGCCACTGTTGGT 59.094 45.455 0.00 0.00 45.98 3.67
3092 6266 7.316393 ACCAAGCTATCTATTGTATGCCTAA 57.684 36.000 0.00 0.00 0.00 2.69
3107 6281 2.619074 GGAGGCAGTTGAACCAAGCTAT 60.619 50.000 5.27 0.00 0.00 2.97
3121 6295 0.395311 AATGGCACTCATGGAGGCAG 60.395 55.000 12.85 0.00 41.26 4.85
3141 6315 3.405823 TTGGCATCGCATCTCATATGA 57.594 42.857 5.07 5.07 0.00 2.15
3145 6319 5.242171 TGATATTTTTGGCATCGCATCTCAT 59.758 36.000 0.00 0.00 0.00 2.90
3156 6330 6.757237 ACAAACATCACTGATATTTTTGGCA 58.243 32.000 16.78 0.00 0.00 4.92
3198 6385 2.934886 ATTTGCTGGGCACAAAACAT 57.065 40.000 0.00 0.00 40.19 2.71
3272 6459 7.703298 AATTTCATTACATATGTGTGCATGC 57.297 32.000 18.81 11.82 39.39 4.06
3350 6537 8.028938 GTCAAAAGGATGCAGTACATTTGTAAT 58.971 33.333 12.39 0.00 39.84 1.89
3361 6550 3.181445 TGGTAGTGTCAAAAGGATGCAGT 60.181 43.478 0.00 0.00 0.00 4.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.