AutoCloner

Multiple sequence alignment - TraesCS5B01G531700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS5B01G531700	chr5B	100.000	2309	0	0	1	2309	689665642	689663334	0.000000e+00	4265.0
1	TraesCS5B01G531700	chr5B	87.140	521	55	9	1565	2081	689426797	689426285	4.280000e-162	580.0
2	TraesCS5B01G531700	chr5B	82.796	93	16	0	2000	2092	689598780	689598688	1.470000e-12	84.2
3	TraesCS5B01G531700	chr7D	97.757	1204	25	2	342	1545	23563423	23564624	0.000000e+00	2073.0
4	TraesCS5B01G531700	chr7D	97.757	1204	25	2	342	1545	135769434	135770635	0.000000e+00	2073.0
5	TraesCS5B01G531700	chr7D	97.593	1205	27	2	345	1549	400291332	400290130	0.000000e+00	2063.0
6	TraesCS5B01G531700	chr7D	97.585	1201	27	2	345	1545	135763618	135762420	0.000000e+00	2056.0
7	TraesCS5B01G531700	chr7D	85.714	133	19	0	2170	2302	565095748	565095616	8.600000e-30	141.0
8	TraesCS5B01G531700	chr3D	97.674	1204	26	2	342	1545	564344549	564345750	0.000000e+00	2067.0
9	TraesCS5B01G531700	chr6D	97.667	1200	26	2	345	1544	402530863	402529666	0.000000e+00	2060.0
10	TraesCS5B01G531700	chr6D	97.419	1201	29	2	345	1545	392049595	392048397	0.000000e+00	2045.0
11	TraesCS5B01G531700	chr6D	91.549	355	20	2	1	346	392050890	392050537	4.460000e-132	481.0
12	TraesCS5B01G531700	chr5D	97.510	1205	28	2	342	1546	460678332	460679534	0.000000e+00	2058.0
13	TraesCS5B01G531700	chr5D	82.534	521	56	18	1565	2081	546356808	546356319	2.120000e-115	425.0
14	TraesCS5B01G531700	chr2D	97.502	1201	28	2	345	1545	70659024	70657826	0.000000e+00	2050.0
15	TraesCS5B01G531700	chr4A	90.267	750	41	13	1563	2291	622446424	622447162	0.000000e+00	952.0
16	TraesCS5B01G531700	chr4A	90.280	751	39	15	1563	2291	622514911	622515649	0.000000e+00	952.0
17	TraesCS5B01G531700	chr4A	89.867	750	44	14	1563	2291	622480484	622481222	0.000000e+00	935.0
18	TraesCS5B01G531700	chr4A	91.990	387	21	7	1563	1948	622563578	622563955	3.380000e-148	534.0
19	TraesCS5B01G531700	chr4A	80.193	207	34	6	2097	2302	728939468	728939668	5.140000e-32	148.0
20	TraesCS5B01G531700	chrUn	93.785	354	12	4	1	346	95716979	95717330	7.310000e-145	523.0
21	TraesCS5B01G531700	chr7A	93.966	348	18	2	1	346	443946996	443947342	7.310000e-145	523.0
22	TraesCS5B01G531700	chr7A	93.220	354	16	2	1	346	736405267	736404914	4.400000e-142	514.0
23	TraesCS5B01G531700	chr6A	93.429	350	16	4	3	346	108919609	108919261	1.580000e-141	512.0
24	TraesCS5B01G531700	chr6B	93.103	348	16	2	1	346	719770394	719770053	9.520000e-139	503.0
25	TraesCS5B01G531700	chr3B	92.593	351	19	3	1	346	699676463	699676115	4.430000e-137	497.0
26	TraesCS5B01G531700	chr3B	92.045	352	21	3	1	346	699682562	699682212	2.670000e-134	488.0
27	TraesCS5B01G531700	chr3B	91.667	348	19	6	1	346	106981820	106982159	7.470000e-130	473.0
28	TraesCS5B01G531700	chr1B	91.908	346	19	3	1	346	668916883	668917219	2.080000e-130	475.0

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS5B01G531700	chr5B	689663334	689665642	2308	True	4265	4265	100.000	1	2309	1	chr5B.!!$R3	2308
1	TraesCS5B01G531700	chr5B	689426285	689426797	512	True	580	580	87.140	1565	2081	1	chr5B.!!$R1	516
2	TraesCS5B01G531700	chr7D	23563423	23564624	1201	False	2073	2073	97.757	342	1545	1	chr7D.!!$F1	1203
3	TraesCS5B01G531700	chr7D	135769434	135770635	1201	False	2073	2073	97.757	342	1545	1	chr7D.!!$F2	1203
4	TraesCS5B01G531700	chr7D	400290130	400291332	1202	True	2063	2063	97.593	345	1549	1	chr7D.!!$R2	1204
5	TraesCS5B01G531700	chr7D	135762420	135763618	1198	True	2056	2056	97.585	345	1545	1	chr7D.!!$R1	1200
6	TraesCS5B01G531700	chr3D	564344549	564345750	1201	False	2067	2067	97.674	342	1545	1	chr3D.!!$F1	1203
7	TraesCS5B01G531700	chr6D	402529666	402530863	1197	True	2060	2060	97.667	345	1544	1	chr6D.!!$R1	1199
8	TraesCS5B01G531700	chr6D	392048397	392050890	2493	True	1263	2045	94.484	1	1545	2	chr6D.!!$R2	1544
9	TraesCS5B01G531700	chr5D	460678332	460679534	1202	False	2058	2058	97.510	342	1546	1	chr5D.!!$F1	1204
10	TraesCS5B01G531700	chr2D	70657826	70659024	1198	True	2050	2050	97.502	345	1545	1	chr2D.!!$R1	1200
11	TraesCS5B01G531700	chr4A	622446424	622447162	738	False	952	952	90.267	1563	2291	1	chr4A.!!$F1	728
12	TraesCS5B01G531700	chr4A	622514911	622515649	738	False	952	952	90.280	1563	2291	1	chr4A.!!$F3	728
13	TraesCS5B01G531700	chr4A	622480484	622481222	738	False	935	935	89.867	1563	2291	1	chr4A.!!$F2	728

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
104	113	0.251922	TAACGTCCAGCCCAGGTAGT	60.252	55.0	0.0	0.0	0.0	2.73	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2021	2977	0.171007	ATTGAGCGCGGTCAATTTGG	59.829	50.0	44.04	2.06	43.29	3.28	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
68	69	8.229253	TGCAGTATATATATTACGGGGTAGTG	57.771	38.462	0.00	0.00	0.00	2.74
70	71	7.503566	GCAGTATATATATTACGGGGTAGTGGA	59.496	40.741	0.00	0.00	0.00	4.02
104	113	0.251922	TAACGTCCAGCCCAGGTAGT	60.252	55.000	0.00	0.00	0.00	2.73
142	151	2.901840	AGCACGCAACCACCACTG	60.902	61.111	0.00	0.00	0.00	3.66
185	194	2.616330	AACGCACATTGCCCTGTCG	61.616	57.895	0.00	0.00	41.12	4.35
189	198	1.237285	GCACATTGCCCTGTCGTTCT	61.237	55.000	0.00	0.00	37.42	3.01
196	205	1.617947	GCCCTGTCGTTCTCCTGGAT	61.618	60.000	0.00	0.00	0.00	3.41
226	235	2.734723	CACCGACACAGGAGCACG	60.735	66.667	0.00	0.00	34.73	5.34
251	260	2.023771	CATCGACACAGCAGCACGT	61.024	57.895	0.00	0.00	0.00	4.49
323	332	3.548818	GGGATCAAATCGGCAAGAATTCG	60.549	47.826	0.00	0.00	0.00	3.34
343	1295	1.909302	GGGGAAGAGATCAACTGACCA	59.091	52.381	0.00	0.00	0.00	4.02
426	1378	2.476185	CGACGCAAAATCTTTGGCTAGG	60.476	50.000	0.88	0.00	34.92	3.02
442	1394	4.263727	TGGCTAGGGCACTTGAGAAATTTA	60.264	41.667	0.10	0.00	40.87	1.40
540	1492	5.512753	AGTTTGTGTGCATTGATGTTACA	57.487	34.783	0.00	0.00	0.00	2.41
549	1501	7.433719	GTGTGCATTGATGTTACACTTAAACAA	59.566	33.333	18.04	0.00	40.95	2.83
812	1764	4.282957	TGATGTTGCAATTGCTTCCCTAAA	59.717	37.500	29.37	12.04	42.66	1.85
999	1951	6.535865	TCGTTTCTGAACTAAAAGTACTGCAA	59.464	34.615	0.00	0.00	33.51	4.08
1334	2286	4.164988	ACTGGAGGTTAGCATGCTATTTCT	59.835	41.667	27.35	22.24	0.00	2.52
1339	2291	9.267071	TGGAGGTTAGCATGCTATTTCTATATA	57.733	33.333	27.35	7.05	0.00	0.86
1372	2324	5.350365	GCGTTGTAACTTCCATGATACTTGA	59.650	40.000	0.00	0.00	0.00	3.02
1374	2326	7.223971	GCGTTGTAACTTCCATGATACTTGATA	59.776	37.037	0.00	0.00	0.00	2.15
1556	2508	3.670377	GCCCTGGCCACGTTTGTC	61.670	66.667	0.00	0.00	34.56	3.18
1557	2509	2.983592	CCCTGGCCACGTTTGTCC	60.984	66.667	0.00	0.00	0.00	4.02
1558	2510	2.983592	CCTGGCCACGTTTGTCCC	60.984	66.667	0.00	0.00	0.00	4.46
1559	2511	2.203280	CTGGCCACGTTTGTCCCA	60.203	61.111	0.00	0.00	0.00	4.37
1560	2512	1.603455	CTGGCCACGTTTGTCCCAT	60.603	57.895	0.00	0.00	0.00	4.00
1561	2513	1.865788	CTGGCCACGTTTGTCCCATG	61.866	60.000	0.00	0.00	0.00	3.66
1603	2555	3.679980	TCAGTCTGCAATTTAGTTCGAGC	59.320	43.478	0.00	0.00	0.00	5.03
1667	2619	7.994425	TTACTCTTATGAAATGGACAAAGCA	57.006	32.000	0.00	0.00	0.00	3.91
1668	2620	6.506500	ACTCTTATGAAATGGACAAAGCAG	57.493	37.500	0.00	0.00	0.00	4.24
1669	2621	5.416952	ACTCTTATGAAATGGACAAAGCAGG	59.583	40.000	0.00	0.00	0.00	4.85
1670	2622	5.324409	TCTTATGAAATGGACAAAGCAGGT	58.676	37.500	0.00	0.00	0.00	4.00
1671	2623	3.947910	ATGAAATGGACAAAGCAGGTG	57.052	42.857	0.00	0.00	0.00	4.00
1672	2624	1.340889	TGAAATGGACAAAGCAGGTGC	59.659	47.619	0.00	0.00	42.49	5.01
1707	2659	2.268762	TTCTGCCAGTGTAATGTGCA	57.731	45.000	0.00	0.00	0.00	4.57
1770	2723	6.086765	GTCATTTCTGTGCATACTTTTTGTCG	59.913	38.462	0.00	0.00	0.00	4.35
1792	2745	7.040755	TGTCGGATTAACTGTTGTTTGATCATT	60.041	33.333	2.69	0.00	37.59	2.57
1794	2747	8.020819	TCGGATTAACTGTTGTTTGATCATTTC	58.979	33.333	2.69	0.00	37.59	2.17
1815	2769	5.868043	TCTTTGTGCTGTGTAGATGATTG	57.132	39.130	0.00	0.00	0.00	2.67
1996	2952	6.861065	ATACCGTGGCAATTCTTTGTATAG	57.139	37.500	0.00	0.00	35.17	1.31
1998	2954	4.394920	ACCGTGGCAATTCTTTGTATAGTG	59.605	41.667	0.00	0.00	35.17	2.74
2021	2977	4.633565	GGACAACATCTCTCTCCAATCAAC	59.366	45.833	0.00	0.00	0.00	3.18
2108	3064	3.735237	ATAGACTTGGCGAGTATGGTG	57.265	47.619	12.26	0.00	39.19	4.17
2116	3072	0.941463	GCGAGTATGGTGAGATGCCG	60.941	60.000	0.00	0.00	0.00	5.69
2184	3140	1.136252	CCAAAGATGAAGCGTGACACG	60.136	52.381	23.43	23.43	45.88	4.49
2200	3156	3.197790	CGCATCAGGTTGAGCCGG	61.198	66.667	0.00	0.00	43.70	6.13
2201	3157	2.825836	GCATCAGGTTGAGCCGGG	60.826	66.667	2.18	0.00	43.70	5.73
2202	3158	2.671070	CATCAGGTTGAGCCGGGT	59.329	61.111	5.45	5.45	43.70	5.28
2203	3159	1.746615	CATCAGGTTGAGCCGGGTG	60.747	63.158	12.94	0.00	43.70	4.61
2204	3160	2.971598	ATCAGGTTGAGCCGGGTGG	61.972	63.158	12.94	0.00	43.70	4.61
2228	3204	4.083164	TGAGTCGCTCAGTTTATTGACGTA	60.083	41.667	5.59	0.00	35.39	3.57
2249	3225	1.372582	CCGTGCATGCATGAGTTAGT	58.627	50.000	35.91	0.00	35.09	2.24
2251	3227	2.476686	CCGTGCATGCATGAGTTAGTTG	60.477	50.000	35.91	16.13	35.09	3.16
2252	3228	2.476686	CGTGCATGCATGAGTTAGTTGG	60.477	50.000	31.95	0.00	35.09	3.77
2257	3233	4.763793	GCATGCATGAGTTAGTTGGGATAT	59.236	41.667	30.64	0.00	0.00	1.63
2265	3241	0.771127	TAGTTGGGATATGGCTGGGC	59.229	55.000	0.00	0.00	0.00	5.36
2273	3249	0.615331	ATATGGCTGGGCGATTCGAT	59.385	50.000	10.88	0.00	0.00	3.59
2291	3267	8.210525	CGATTCGATCAAGTTGATTAGTACATG	58.789	37.037	19.19	0.00	37.20	3.21
2292	3268	6.828502	TCGATCAAGTTGATTAGTACATGC	57.171	37.500	19.19	3.00	37.20	4.06
2293	3269	6.337356	TCGATCAAGTTGATTAGTACATGCA	58.663	36.000	19.19	0.00	37.20	3.96
2294	3270	6.986231	TCGATCAAGTTGATTAGTACATGCAT	59.014	34.615	19.19	0.00	37.20	3.96
2295	3271	8.141268	TCGATCAAGTTGATTAGTACATGCATA	58.859	33.333	19.19	0.00	37.20	3.14
2296	3272	8.764287	CGATCAAGTTGATTAGTACATGCATAA	58.236	33.333	19.19	0.00	37.20	1.90
2297	3273	9.869844	GATCAAGTTGATTAGTACATGCATAAC	57.130	33.333	19.19	0.44	37.20	1.89
2298	3274	8.785329	TCAAGTTGATTAGTACATGCATAACA	57.215	30.769	0.08	0.00	0.00	2.41
2299	3275	9.394767	TCAAGTTGATTAGTACATGCATAACAT	57.605	29.630	0.08	0.00	40.66	2.71

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
15	16	0.927029	ATGGGCCCCCTTTTAGTCTC	59.073	55.000	22.27	0.00	36.94	3.36
89	98	0.250513	CAGAACTACCTGGGCTGGAC	59.749	60.000	0.00	0.00	0.00	4.02
104	113	2.416107	CTTGCTGGGTGGGCTCAGAA	62.416	60.000	0.00	0.00	45.98	3.02
174	183	0.036010	CAGGAGAACGACAGGGCAAT	60.036	55.000	0.00	0.00	0.00	3.56
196	205	3.691342	CGGTGCGTCTCCCTGGAA	61.691	66.667	0.00	0.00	0.00	3.53
207	216	4.662961	TGCTCCTGTGTCGGTGCG	62.663	66.667	0.00	0.00	44.37	5.34
226	235	2.161486	GCTGTGTCGATGCGTCTCC	61.161	63.158	4.05	0.00	0.00	3.71
271	280	3.345808	CAGGTTCGGTGTGGTGCG	61.346	66.667	0.00	0.00	0.00	5.34
277	286	1.821061	CTCAGCTCCAGGTTCGGTGT	61.821	60.000	0.00	0.00	0.00	4.16
323	332	1.909302	TGGTCAGTTGATCTCTTCCCC	59.091	52.381	0.00	0.00	0.00	4.81
355	1307	8.598041	AGAAGTTCTCTACAATTCCAGTAATGT	58.402	33.333	0.00	0.00	30.22	2.71
370	1322	3.311871	GCGTCATCGGTAGAAGTTCTCTA	59.688	47.826	9.12	0.00	35.10	2.43
442	1394	7.040548	CCAAATGACCATGCCAAGTAAAAATTT	60.041	33.333	0.00	0.00	0.00	1.82
540	1492	5.606348	TGGCACCTTCAATTTGTTTAAGT	57.394	34.783	0.00	0.00	0.00	2.24
549	1501	7.427989	AAAATATGAGATGGCACCTTCAATT	57.572	32.000	5.47	0.00	0.00	2.32
658	1610	6.360844	TCTAGTAATACGTCTCTTGACAGC	57.639	41.667	0.00	0.00	43.06	4.40
696	1648	4.335082	TTCGTCATTGCCACTAATTTCG	57.665	40.909	0.00	0.00	0.00	3.46
812	1764	8.367660	TGTCTTCAGTTCCTCAAATCTAGTAT	57.632	34.615	0.00	0.00	0.00	2.12
999	1951	4.958509	TGAATGTGTTTGGCAATGTCATT	58.041	34.783	17.53	17.53	0.00	2.57
1087	2039	3.800506	GGTACGGTCAAAAGGATACGATG	59.199	47.826	0.00	0.00	46.39	3.84
1215	2167	4.577693	TCCAGCATATTCTTCTCAATGCAC	59.422	41.667	8.65	0.00	45.62	4.57
1374	2326	7.961351	TGTTATTTTCCATGTCTTTGTTCCAT	58.039	30.769	0.00	0.00	0.00	3.41
1476	2428	3.054361	GTGGGCCCAATAGAGAGAGAAAA	60.054	47.826	30.64	0.00	0.00	2.29
1480	2432	1.415659	CAGTGGGCCCAATAGAGAGAG	59.584	57.143	30.64	7.71	0.00	3.20
1554	2506	2.216898	GAGAGCTATGCAACATGGGAC	58.783	52.381	0.00	0.00	0.00	4.46
1555	2507	1.839354	TGAGAGCTATGCAACATGGGA	59.161	47.619	0.00	0.00	0.00	4.37
1556	2508	2.336945	TGAGAGCTATGCAACATGGG	57.663	50.000	0.00	0.00	0.00	4.00
1557	2509	4.082625	TGTTTTGAGAGCTATGCAACATGG	60.083	41.667	0.00	0.00	0.00	3.66
1558	2510	5.050644	TGTTTTGAGAGCTATGCAACATG	57.949	39.130	0.00	0.00	0.00	3.21
1559	2511	5.416639	TGATGTTTTGAGAGCTATGCAACAT	59.583	36.000	8.42	8.42	36.36	2.71
1560	2512	4.761227	TGATGTTTTGAGAGCTATGCAACA	59.239	37.500	0.00	0.00	0.00	3.33
1561	2513	5.106396	ACTGATGTTTTGAGAGCTATGCAAC	60.106	40.000	0.00	0.00	0.00	4.17
1603	2555	3.289836	TGGCATTACAAGATCACCATGG	58.710	45.455	11.19	11.19	0.00	3.66
1663	2615	1.500783	ATACCACCTGGCACCTGCTT	61.501	55.000	0.00	0.00	41.70	3.91
1666	2618	1.077501	CCATACCACCTGGCACCTG	60.078	63.158	0.00	0.00	39.32	4.00
1667	2619	1.140134	AACCATACCACCTGGCACCT	61.140	55.000	0.00	0.00	37.27	4.00
1668	2620	0.251608	AAACCATACCACCTGGCACC	60.252	55.000	0.00	0.00	37.27	5.01
1669	2621	1.627864	AAAACCATACCACCTGGCAC	58.372	50.000	0.00	0.00	37.27	5.01
1670	2622	2.158385	AGAAAAACCATACCACCTGGCA	60.158	45.455	0.00	0.00	37.27	4.92
1671	2623	2.231235	CAGAAAAACCATACCACCTGGC	59.769	50.000	0.00	0.00	37.27	4.85
1672	2624	2.231235	GCAGAAAAACCATACCACCTGG	59.769	50.000	0.00	0.00	39.80	4.45
1770	2723	9.696917	AAGAAATGATCAAACAACAGTTAATCC	57.303	29.630	0.00	0.00	0.00	3.01
1792	2745	5.335113	GCAATCATCTACACAGCACAAAGAA	60.335	40.000	0.00	0.00	0.00	2.52
1794	2747	4.409570	GCAATCATCTACACAGCACAAAG	58.590	43.478	0.00	0.00	0.00	2.77
1815	2769	3.379372	AGACAGCACAACAATCATATGGC	59.621	43.478	2.13	0.00	0.00	4.40
1895	2851	6.091713	GTGCTACATAACAATACCACGAAACT	59.908	38.462	0.00	0.00	0.00	2.66
1900	2856	5.277297	CCATGTGCTACATAACAATACCACG	60.277	44.000	2.15	0.00	36.53	4.94
1996	2952	3.685139	TTGGAGAGAGATGTTGTCCAC	57.315	47.619	0.00	0.00	37.68	4.02
1998	2954	4.478206	TGATTGGAGAGAGATGTTGTCC	57.522	45.455	0.00	0.00	0.00	4.02
2021	2977	0.171007	ATTGAGCGCGGTCAATTTGG	59.829	50.000	44.04	2.06	43.29	3.28
2184	3140	2.825836	CCCGGCTCAACCTGATGC	60.826	66.667	0.00	0.00	35.61	3.91
2200	3156	0.249911	AAACTGAGCGACTCACCACC	60.250	55.000	5.59	0.00	35.39	4.61
2201	3157	2.433868	TAAACTGAGCGACTCACCAC	57.566	50.000	5.59	0.00	35.39	4.16
2202	3158	3.006430	TCAATAAACTGAGCGACTCACCA	59.994	43.478	5.59	0.00	35.39	4.17
2203	3159	3.368236	GTCAATAAACTGAGCGACTCACC	59.632	47.826	5.59	0.00	35.39	4.02
2204	3160	3.059570	CGTCAATAAACTGAGCGACTCAC	59.940	47.826	5.59	0.00	35.39	3.51
2228	3204	0.392863	TAACTCATGCATGCACGGCT	60.393	50.000	25.37	3.57	0.00	5.52
2249	3225	1.426251	ATCGCCCAGCCATATCCCAA	61.426	55.000	0.00	0.00	0.00	4.12
2251	3227	0.678048	GAATCGCCCAGCCATATCCC	60.678	60.000	0.00	0.00	0.00	3.85
2252	3228	1.021390	CGAATCGCCCAGCCATATCC	61.021	60.000	0.00	0.00	0.00	2.59
2257	3233	2.108976	GATCGAATCGCCCAGCCA	59.891	61.111	0.00	0.00	0.00	4.75
2265	3241	7.679659	TGTACTAATCAACTTGATCGAATCG	57.320	36.000	4.70	0.00	35.76	3.34
2273	3249	8.785329	TGTTATGCATGTACTAATCAACTTGA	57.215	30.769	10.16	0.00	0.00	3.02

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.