Multiple sequence alignment - TraesCS5B01G531400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G531400 chr5B 100.000 3086 0 0 1 3086 689377583 689374498 0.000000e+00 5699
1 TraesCS5B01G531400 chr5B 83.897 621 88 8 6 623 589872565 589871954 1.590000e-162 582
2 TraesCS5B01G531400 chr5B 86.000 200 21 5 1986 2179 689375348 689375150 1.120000e-49 207
3 TraesCS5B01G531400 chr5B 86.000 200 21 5 2236 2434 689375598 689375405 1.120000e-49 207
4 TraesCS5B01G531400 chr5D 90.795 2542 110 48 625 3086 546087511 546085014 0.000000e+00 3284
5 TraesCS5B01G531400 chr5D 83.228 632 98 7 1 629 134914160 134913534 9.600000e-160 573
6 TraesCS5B01G531400 chr5D 86.829 205 20 5 1981 2179 546085864 546085661 4.010000e-54 222
7 TraesCS5B01G531400 chr4A 89.413 2333 150 52 684 2951 623314982 623317282 0.000000e+00 2850
8 TraesCS5B01G531400 chr4A 85.086 637 87 7 1 634 690088482 690089113 0.000000e+00 643
9 TraesCS5B01G531400 chr4A 85.577 208 20 5 1981 2179 623316566 623316772 3.120000e-50 209
10 TraesCS5B01G531400 chr2B 86.458 672 62 12 1941 2598 22843796 22844452 0.000000e+00 710
11 TraesCS5B01G531400 chr2B 85.304 626 89 3 3 628 440607961 440607339 0.000000e+00 643
12 TraesCS5B01G531400 chr2B 73.381 417 73 28 2274 2664 22843868 22844272 1.500000e-23 121
13 TraesCS5B01G531400 chr7D 87.608 581 69 3 1 581 412606491 412605914 0.000000e+00 671
14 TraesCS5B01G531400 chr3B 84.211 627 92 7 1 625 699510444 699509823 1.220000e-168 603
15 TraesCS5B01G531400 chr1D 83.835 631 89 12 3 628 353644702 353644080 3.430000e-164 588
16 TraesCS5B01G531400 chr1D 82.935 627 102 5 1 625 223469601 223470224 7.470000e-156 560
17 TraesCS5B01G531400 chr2D 83.121 628 98 8 1 625 620213757 620214379 1.610000e-157 566


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G531400 chr5B 689374498 689377583 3085 True 2037.666667 5699 90.666667 1 3086 3 chr5B.!!$R2 3085
1 TraesCS5B01G531400 chr5B 589871954 589872565 611 True 582.000000 582 83.897000 6 623 1 chr5B.!!$R1 617
2 TraesCS5B01G531400 chr5D 546085014 546087511 2497 True 1753.000000 3284 88.812000 625 3086 2 chr5D.!!$R2 2461
3 TraesCS5B01G531400 chr5D 134913534 134914160 626 True 573.000000 573 83.228000 1 629 1 chr5D.!!$R1 628
4 TraesCS5B01G531400 chr4A 623314982 623317282 2300 False 1529.500000 2850 87.495000 684 2951 2 chr4A.!!$F2 2267
5 TraesCS5B01G531400 chr4A 690088482 690089113 631 False 643.000000 643 85.086000 1 634 1 chr4A.!!$F1 633
6 TraesCS5B01G531400 chr2B 440607339 440607961 622 True 643.000000 643 85.304000 3 628 1 chr2B.!!$R1 625
7 TraesCS5B01G531400 chr2B 22843796 22844452 656 False 415.500000 710 79.919500 1941 2664 2 chr2B.!!$F1 723
8 TraesCS5B01G531400 chr7D 412605914 412606491 577 True 671.000000 671 87.608000 1 581 1 chr7D.!!$R1 580
9 TraesCS5B01G531400 chr3B 699509823 699510444 621 True 603.000000 603 84.211000 1 625 1 chr3B.!!$R1 624
10 TraesCS5B01G531400 chr1D 353644080 353644702 622 True 588.000000 588 83.835000 3 628 1 chr1D.!!$R1 625
11 TraesCS5B01G531400 chr1D 223469601 223470224 623 False 560.000000 560 82.935000 1 625 1 chr1D.!!$F1 624
12 TraesCS5B01G531400 chr2D 620213757 620214379 622 False 566.000000 566 83.121000 1 625 1 chr2D.!!$F1 624

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
251 254 0.035343 GAGCTAGGGTTTGGGTGTCC 60.035 60.0 0.00 0.0 0.00 4.02 F
1158 1249 0.460284 ACTTCATCCACGACATCGGC 60.460 55.0 6.21 0.0 44.95 5.54 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1254 1345 0.037326 TCTTGATGAGCACGTCCACC 60.037 55.0 0.64 0.0 0.0 4.61 R
2639 2771 0.672401 TTTTAGCGCCGAACCTCCAG 60.672 55.0 2.29 0.0 0.0 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 1.442017 GGCAAACATTCGCGTGGAC 60.442 57.895 5.77 0.00 0.00 4.02
73 74 1.832912 GATGGAGAATGCGGGAGGT 59.167 57.895 0.00 0.00 0.00 3.85
117 118 1.222936 CGGGCTCCTCTTTGATGCT 59.777 57.895 0.00 0.00 0.00 3.79
120 121 1.488393 GGGCTCCTCTTTGATGCTACT 59.512 52.381 0.00 0.00 0.00 2.57
151 152 3.071206 GAGGACGAGCCAGCCTCA 61.071 66.667 0.00 0.00 45.89 3.86
157 158 2.993008 GAGCCAGCCTCATGGTCA 59.007 61.111 0.00 0.00 42.75 4.02
251 254 0.035343 GAGCTAGGGTTTGGGTGTCC 60.035 60.000 0.00 0.00 0.00 4.02
265 268 1.532316 TGTCCGGTTTCGAGGAGGT 60.532 57.895 0.00 0.00 37.18 3.85
308 312 3.986006 GACTGCGACCGGTCCACA 61.986 66.667 28.52 23.99 40.73 4.17
316 320 3.322466 CCGGTCCACAGCTTCCCT 61.322 66.667 0.00 0.00 0.00 4.20
361 366 2.606213 TGGGCGGATGTCAGGTGA 60.606 61.111 0.00 0.00 0.00 4.02
364 369 2.359169 GGCGGATGTCAGGTGAGGA 61.359 63.158 0.00 0.00 0.00 3.71
463 469 2.034879 CATCCGTTTGCTGTCCGCT 61.035 57.895 0.00 0.00 40.11 5.52
469 475 4.600576 TTGCTGTCCGCTGCGACA 62.601 61.111 25.45 22.17 41.65 4.35
486 492 0.796312 ACACAAATCCGACGCATGTC 59.204 50.000 0.00 0.00 41.91 3.06
530 536 2.875933 GGACACAAAACGAACCAGATGA 59.124 45.455 0.00 0.00 0.00 2.92
531 537 3.314080 GGACACAAAACGAACCAGATGAA 59.686 43.478 0.00 0.00 0.00 2.57
551 557 4.700365 CAGACCGTCGCACGCTGA 62.700 66.667 9.15 0.00 40.91 4.26
564 570 2.349755 GCTGAACCGTGGGGCTTA 59.650 61.111 0.00 0.00 36.48 3.09
566 572 0.679960 GCTGAACCGTGGGGCTTATT 60.680 55.000 0.00 0.00 36.48 1.40
574 580 1.538075 CGTGGGGCTTATTCGTTTTGT 59.462 47.619 0.00 0.00 0.00 2.83
633 639 1.835927 GCAGTTGGCCTGAGTCCTCT 61.836 60.000 3.32 0.00 44.49 3.69
642 648 1.203523 CCTGAGTCCTCTTCTTGTCCG 59.796 57.143 0.00 0.00 0.00 4.79
706 713 3.869473 TTTCCTTGGCGACCGACCG 62.869 63.158 0.00 0.00 0.00 4.79
712 719 4.446413 GGCGACCGACCGACCAAT 62.446 66.667 0.72 0.00 0.00 3.16
713 720 2.433664 GCGACCGACCGACCAATT 60.434 61.111 0.72 0.00 0.00 2.32
714 721 1.153784 GCGACCGACCGACCAATTA 60.154 57.895 0.72 0.00 0.00 1.40
715 722 0.737019 GCGACCGACCGACCAATTAA 60.737 55.000 0.72 0.00 0.00 1.40
717 724 1.648504 GACCGACCGACCAATTAAGG 58.351 55.000 0.00 0.00 0.00 2.69
868 918 3.561241 GGCCGGATCCCCTTCCTC 61.561 72.222 5.05 0.00 33.30 3.71
875 925 3.412350 ATCCCCTTCCTCCCCTCCG 62.412 68.421 0.00 0.00 0.00 4.63
898 968 2.561858 AGGTACTTCCCTCTTGTTCGAC 59.438 50.000 0.00 0.00 27.25 4.20
908 979 4.331168 CCCTCTTGTTCGACTGATTTGATC 59.669 45.833 0.00 0.00 0.00 2.92
911 982 3.694043 TGTTCGACTGATTTGATCCCA 57.306 42.857 0.00 0.00 0.00 4.37
912 983 4.014569 TGTTCGACTGATTTGATCCCAA 57.985 40.909 0.00 0.00 0.00 4.12
913 984 4.393834 TGTTCGACTGATTTGATCCCAAA 58.606 39.130 0.00 0.00 45.28 3.28
914 985 4.455533 TGTTCGACTGATTTGATCCCAAAG 59.544 41.667 0.00 0.00 44.53 2.77
926 997 4.517285 TGATCCCAAAGAAAGAATCCTCG 58.483 43.478 0.00 0.00 0.00 4.63
928 999 3.674997 TCCCAAAGAAAGAATCCTCGTG 58.325 45.455 0.00 0.00 0.00 4.35
929 1000 3.326588 TCCCAAAGAAAGAATCCTCGTGA 59.673 43.478 0.00 0.00 0.00 4.35
930 1001 3.686726 CCCAAAGAAAGAATCCTCGTGAG 59.313 47.826 0.00 0.00 0.00 3.51
979 1051 1.150567 CGGGATCTGAAGCAAGCTCG 61.151 60.000 0.00 0.00 0.00 5.03
992 1064 3.267860 GCTCGGATCTTGCCAGCG 61.268 66.667 0.00 0.00 0.00 5.18
994 1066 1.153568 CTCGGATCTTGCCAGCGAA 60.154 57.895 0.00 0.00 0.00 4.70
1158 1249 0.460284 ACTTCATCCACGACATCGGC 60.460 55.000 6.21 0.00 44.95 5.54
1489 1580 3.528370 CCTACCTGCTCCGGGTCG 61.528 72.222 0.00 0.00 42.88 4.79
1497 1588 2.885861 CTCCGGGTCGTCTTCCTG 59.114 66.667 0.00 0.00 0.00 3.86
1572 1663 2.279252 CCGATCCCGTACAAGCCG 60.279 66.667 0.00 0.00 0.00 5.52
1611 1702 2.526304 TCAAGTTCCACCACTTCTCG 57.474 50.000 0.00 0.00 34.60 4.04
1626 1717 0.959372 TCTCGTTCGAGGAGACCACC 60.959 60.000 19.65 0.00 34.57 4.61
1693 1784 1.301677 GCTCAACCTGCTGCAGTACC 61.302 60.000 26.41 6.57 0.00 3.34
1785 1876 1.288188 TCACCAAGATGCAGATCCCA 58.712 50.000 0.00 0.00 0.00 4.37
1845 1936 2.080536 CATGATCAGGGGCAGGGGA 61.081 63.158 0.09 0.00 0.00 4.81
1917 2008 0.674581 TGAAGCTGCCCATCGACAAG 60.675 55.000 0.00 0.00 0.00 3.16
2009 2122 4.592942 TGTTTCCTCTGCATCTTGCTTAT 58.407 39.130 0.75 0.00 45.31 1.73
2010 2123 5.012239 TGTTTCCTCTGCATCTTGCTTATT 58.988 37.500 0.75 0.00 45.31 1.40
2012 2125 2.947652 TCCTCTGCATCTTGCTTATTGC 59.052 45.455 0.75 0.00 45.31 3.56
2013 2126 2.950309 CCTCTGCATCTTGCTTATTGCT 59.050 45.455 0.75 0.00 45.31 3.91
2014 2127 3.243101 CCTCTGCATCTTGCTTATTGCTG 60.243 47.826 0.75 0.00 45.31 4.41
2015 2128 3.349927 TCTGCATCTTGCTTATTGCTGT 58.650 40.909 0.75 0.00 45.31 4.40
2016 2129 3.128068 TCTGCATCTTGCTTATTGCTGTG 59.872 43.478 0.75 0.00 45.31 3.66
2017 2130 2.190981 GCATCTTGCTTATTGCTGTGC 58.809 47.619 0.00 0.00 40.96 4.57
2018 2131 2.416296 GCATCTTGCTTATTGCTGTGCA 60.416 45.455 0.00 0.00 40.96 4.57
2038 2151 0.463204 ATCATCAGACCAGCTGGACG 59.537 55.000 39.19 25.77 44.98 4.79
2044 2157 2.925170 ACCAGCTGGACGAGGCTT 60.925 61.111 39.19 11.44 36.59 4.35
2065 2178 5.582665 GCTTGTCCTGTTTTGACTAGGATAG 59.417 44.000 0.00 0.00 46.50 2.08
2181 2299 7.101054 TCGATGCTAAAAATAGTACACAACCT 58.899 34.615 0.00 0.00 0.00 3.50
2346 2464 9.472361 CAATGGAAGAAATTGATATGATGTTCC 57.528 33.333 0.00 0.00 37.22 3.62
2347 2465 9.430399 AATGGAAGAAATTGATATGATGTTCCT 57.570 29.630 0.00 0.00 33.51 3.36
2349 2467 7.503566 TGGAAGAAATTGATATGATGTTCCTCC 59.496 37.037 0.00 0.00 33.51 4.30
2350 2468 7.308229 GGAAGAAATTGATATGATGTTCCTCCG 60.308 40.741 0.00 0.00 0.00 4.63
2487 2619 6.028146 TGTTGATTGCTGCATTTACATCTT 57.972 33.333 1.84 0.00 0.00 2.40
2639 2771 3.509184 AGCCCTCTTCTGAATTTTTCTGC 59.491 43.478 0.00 0.00 0.00 4.26
2761 2894 2.792290 CGCGTCATGCTCTGGTTCG 61.792 63.158 0.00 0.00 43.27 3.95
2792 2925 9.865321 AAACTCGCTAGTAGAAATATTTGTGTA 57.135 29.630 5.17 0.00 33.75 2.90
2834 2968 1.673033 GCGTTGTCAGTGGCAGATACT 60.673 52.381 0.00 0.00 0.00 2.12
2894 3028 6.262944 TGTGACATCTGTTGCTGATTAACTTT 59.737 34.615 0.00 0.00 0.00 2.66
2895 3029 7.443879 TGTGACATCTGTTGCTGATTAACTTTA 59.556 33.333 0.00 0.00 0.00 1.85
2896 3030 8.289618 GTGACATCTGTTGCTGATTAACTTTAA 58.710 33.333 0.00 0.00 0.00 1.52
3006 3140 5.100751 AGAACAGATGAAAGAAAAGCGTG 57.899 39.130 0.00 0.00 0.00 5.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
46 47 2.377810 ATTCTCCATCGCCCCTGCA 61.378 57.895 0.00 0.00 37.32 4.41
203 206 2.578163 CTTCCTTGAGATCGCCGGCA 62.578 60.000 28.98 14.46 0.00 5.69
212 215 0.496382 TCCCTTCCCCTTCCTTGAGA 59.504 55.000 0.00 0.00 0.00 3.27
216 219 0.916845 GCTCTCCCTTCCCCTTCCTT 60.917 60.000 0.00 0.00 0.00 3.36
251 254 2.506438 GCGACCTCCTCGAAACCG 60.506 66.667 0.00 0.00 46.14 4.44
283 286 4.057428 GGTCGCAGTCCACGCTCT 62.057 66.667 0.00 0.00 35.31 4.09
308 312 4.683671 GCGTCCTTCTTAAATAGGGAAGCT 60.684 45.833 14.73 0.00 44.09 3.74
316 320 3.491447 GCGGTAGGCGTCCTTCTTAAATA 60.491 47.826 3.71 0.00 34.61 1.40
378 383 1.444119 CCACCGCCCGACATTAATGG 61.444 60.000 19.37 2.89 0.00 3.16
463 469 2.663478 GCGTCGGATTTGTGTCGCA 61.663 57.895 0.00 0.00 42.54 5.10
486 492 0.644331 CTGACTCATTTCGAGCGCAG 59.356 55.000 11.47 2.69 46.63 5.18
530 536 2.380410 GCGTGCGACGGTCTGAATT 61.380 57.895 6.57 0.00 42.82 2.17
531 537 2.809601 GCGTGCGACGGTCTGAAT 60.810 61.111 6.57 0.00 42.82 2.57
551 557 0.037160 AACGAATAAGCCCCACGGTT 59.963 50.000 0.00 0.00 35.92 4.44
633 639 3.064207 CTGGAATTCGTTCGGACAAGAA 58.936 45.455 0.00 0.00 0.00 2.52
642 648 5.444122 CAAGAAAGTGACTGGAATTCGTTC 58.556 41.667 0.00 0.00 0.00 3.95
706 713 3.009143 ACCTCACCTCACCTTAATTGGTC 59.991 47.826 0.00 0.00 38.45 4.02
707 714 2.986728 ACCTCACCTCACCTTAATTGGT 59.013 45.455 0.00 0.00 41.77 3.67
709 716 4.256920 CTCACCTCACCTCACCTTAATTG 58.743 47.826 0.00 0.00 0.00 2.32
710 717 3.264450 CCTCACCTCACCTCACCTTAATT 59.736 47.826 0.00 0.00 0.00 1.40
712 719 2.257207 CCTCACCTCACCTCACCTTAA 58.743 52.381 0.00 0.00 0.00 1.85
713 720 1.149288 ACCTCACCTCACCTCACCTTA 59.851 52.381 0.00 0.00 0.00 2.69
714 721 0.104934 ACCTCACCTCACCTCACCTT 60.105 55.000 0.00 0.00 0.00 3.50
715 722 0.833834 CACCTCACCTCACCTCACCT 60.834 60.000 0.00 0.00 0.00 4.00
717 724 0.832135 TCCACCTCACCTCACCTCAC 60.832 60.000 0.00 0.00 0.00 3.51
818 868 4.457496 AGATCGCGTGCTGGTGGG 62.457 66.667 5.77 0.00 0.00 4.61
820 870 2.887568 GGAGATCGCGTGCTGGTG 60.888 66.667 5.77 0.00 0.00 4.17
821 871 3.381983 TGGAGATCGCGTGCTGGT 61.382 61.111 5.77 0.00 0.00 4.00
822 872 2.887568 GTGGAGATCGCGTGCTGG 60.888 66.667 5.77 0.00 0.00 4.85
824 874 2.492090 GAGTGGAGATCGCGTGCT 59.508 61.111 5.77 4.32 0.00 4.40
852 902 3.561241 GGAGGAAGGGGATCCGGC 61.561 72.222 5.45 0.00 44.60 6.13
868 918 2.732619 GGAAGTACCTGCGGAGGGG 61.733 68.421 27.88 3.97 44.84 4.79
875 925 2.701107 GAACAAGAGGGAAGTACCTGC 58.299 52.381 0.00 0.00 42.10 4.85
898 968 7.123847 AGGATTCTTTCTTTGGGATCAAATCAG 59.876 37.037 0.00 0.00 41.45 2.90
908 979 3.674997 TCACGAGGATTCTTTCTTTGGG 58.325 45.455 0.00 0.00 0.00 4.12
911 982 6.293004 AGATCTCACGAGGATTCTTTCTTT 57.707 37.500 0.00 0.00 0.00 2.52
912 983 5.163457 GGAGATCTCACGAGGATTCTTTCTT 60.163 44.000 23.85 0.00 0.00 2.52
913 984 4.340950 GGAGATCTCACGAGGATTCTTTCT 59.659 45.833 23.85 0.00 0.00 2.52
914 985 4.098654 TGGAGATCTCACGAGGATTCTTTC 59.901 45.833 23.85 2.32 0.00 2.62
926 997 4.161189 TGAGATGGAAAGTGGAGATCTCAC 59.839 45.833 23.85 18.25 42.51 3.51
928 999 5.305128 AGATGAGATGGAAAGTGGAGATCTC 59.695 44.000 14.75 14.75 39.59 2.75
929 1000 5.218179 AGATGAGATGGAAAGTGGAGATCT 58.782 41.667 0.00 0.00 0.00 2.75
930 1001 5.540911 GAGATGAGATGGAAAGTGGAGATC 58.459 45.833 0.00 0.00 0.00 2.75
979 1051 1.986575 GCTGTTCGCTGGCAAGATCC 61.987 60.000 0.00 0.00 35.14 3.36
992 1064 1.338200 ACGAGGAAGACATGGCTGTTC 60.338 52.381 0.00 0.00 35.14 3.18
994 1066 0.247736 GACGAGGAAGACATGGCTGT 59.752 55.000 0.00 0.00 38.67 4.40
1254 1345 0.037326 TCTTGATGAGCACGTCCACC 60.037 55.000 0.64 0.00 0.00 4.61
1257 1348 1.079503 GGTTCTTGATGAGCACGTCC 58.920 55.000 0.64 0.00 0.00 4.79
1386 1477 1.592223 CACCTTGACCGTCTCCTCC 59.408 63.158 0.00 0.00 0.00 4.30
1512 1603 1.643832 GATCTTGATGCGGCCGAAC 59.356 57.895 33.48 19.12 0.00 3.95
1611 1702 2.126031 GCGGTGGTCTCCTCGAAC 60.126 66.667 0.00 0.00 0.00 3.95
1626 1717 2.124983 CTCAGGTGGATGGTGGCG 60.125 66.667 0.00 0.00 0.00 5.69
1693 1784 2.887568 GTCGCCGAGCCACATCTG 60.888 66.667 0.00 0.00 0.00 2.90
1740 1831 0.179097 GCTTCTCGATCCTGGTGGAC 60.179 60.000 0.00 0.00 46.51 4.02
1785 1876 0.040204 CCTTGGGCCTGAAGGTGAAT 59.960 55.000 20.38 0.00 36.05 2.57
1845 1936 1.004745 CCCTTGATGCTGTACCCAGTT 59.995 52.381 0.00 0.00 41.02 3.16
1851 1942 2.113860 TCTTGCCCTTGATGCTGTAC 57.886 50.000 0.00 0.00 0.00 2.90
2010 2123 1.271488 TGGTCTGATGATTGCACAGCA 60.271 47.619 0.00 0.00 36.47 4.41
2012 2125 1.400846 GCTGGTCTGATGATTGCACAG 59.599 52.381 0.00 0.00 0.00 3.66
2013 2126 1.003928 AGCTGGTCTGATGATTGCACA 59.996 47.619 0.00 0.00 0.00 4.57
2014 2127 1.400846 CAGCTGGTCTGATGATTGCAC 59.599 52.381 5.57 0.00 45.72 4.57
2015 2128 1.680860 CCAGCTGGTCTGATGATTGCA 60.681 52.381 25.53 0.00 45.72 4.08
2016 2129 1.022735 CCAGCTGGTCTGATGATTGC 58.977 55.000 25.53 0.00 45.72 3.56
2017 2130 2.286872 GTCCAGCTGGTCTGATGATTG 58.713 52.381 31.58 2.09 45.72 2.67
2018 2131 1.134580 CGTCCAGCTGGTCTGATGATT 60.135 52.381 31.58 0.00 45.72 2.57
2038 2151 2.576615 AGTCAAAACAGGACAAGCCTC 58.423 47.619 0.00 0.00 46.97 4.70
2044 2157 6.269077 TCAACTATCCTAGTCAAAACAGGACA 59.731 38.462 0.00 0.00 41.18 4.02
2065 2178 8.253113 ACCATATCAATTTCTTCCATTGTCAAC 58.747 33.333 0.00 0.00 33.91 3.18
2181 2299 5.880901 AGGGCAATTCTTCTCTTTCTGTTA 58.119 37.500 0.00 0.00 0.00 2.41
2272 2390 5.127356 ACAAACCTGGTCTAGCTAGTATGAC 59.873 44.000 20.10 11.02 0.00 3.06
2340 2458 5.070446 TGCACTCTAATAATCGGAGGAACAT 59.930 40.000 0.00 0.00 0.00 2.71
2345 2463 3.736252 CGTTGCACTCTAATAATCGGAGG 59.264 47.826 0.00 0.00 0.00 4.30
2346 2464 3.736252 CCGTTGCACTCTAATAATCGGAG 59.264 47.826 0.00 0.00 38.03 4.63
2347 2465 3.713288 CCGTTGCACTCTAATAATCGGA 58.287 45.455 0.00 0.00 38.03 4.55
2349 2467 3.060272 CAGCCGTTGCACTCTAATAATCG 60.060 47.826 0.00 0.00 41.13 3.34
2350 2468 4.119862 TCAGCCGTTGCACTCTAATAATC 58.880 43.478 0.00 0.00 41.13 1.75
2487 2619 3.398406 AGTGTGTGACGATTGCACAATA 58.602 40.909 10.56 3.11 46.63 1.90
2524 2656 8.992073 TCCTAGTAAAAACAAGATTAAACCGAC 58.008 33.333 0.00 0.00 0.00 4.79
2639 2771 0.672401 TTTTAGCGCCGAACCTCCAG 60.672 55.000 2.29 0.00 0.00 3.86
2761 2894 8.421673 AATATTTCTACTAGCGAGTTTCAACC 57.578 34.615 4.33 0.00 37.10 3.77
2792 2925 7.483307 ACGCAGAATTTCAGCATAACAATTAT 58.517 30.769 13.32 0.00 0.00 1.28
2861 2995 6.486320 TCAGCAACAGATGTCACAAGATTTTA 59.514 34.615 0.00 0.00 0.00 1.52
3006 3140 3.254166 CACAAATGCCCAGGTCTATATGC 59.746 47.826 0.00 0.00 0.00 3.14


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.