Multiple sequence alignment - TraesCS5B01G531100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G531100 chr5B 100.000 2279 0 0 1 2279 689338218 689335940 0.000000e+00 4209.0
1 TraesCS5B01G531100 chrUn 87.662 770 33 28 660 1400 29990783 29990047 0.000000e+00 839.0
2 TraesCS5B01G531100 chrUn 93.735 431 20 4 1849 2279 29842383 29842806 6.860000e-180 640.0
3 TraesCS5B01G531100 chrUn 89.786 421 22 11 987 1394 29818832 29819244 9.330000e-144 520.0
4 TraesCS5B01G531100 chrUn 88.921 343 16 5 1029 1367 29841787 29842111 9.800000e-109 403.0
5 TraesCS5B01G531100 chrUn 87.640 356 25 8 548 894 29810869 29811214 1.640000e-106 396.0
6 TraesCS5B01G531100 chrUn 94.043 235 10 1 1618 1848 29842106 29842340 1.000000e-93 353.0
7 TraesCS5B01G531100 chrUn 87.324 142 7 4 754 891 29841637 29841771 3.920000e-33 152.0
8 TraesCS5B01G531100 chr5A 83.595 829 71 34 417 1217 706273525 706274316 0.000000e+00 717.0
9 TraesCS5B01G531100 chr5A 85.680 412 31 13 990 1394 706289719 706290109 2.110000e-110 409.0
10 TraesCS5B01G531100 chr5A 77.620 563 76 34 851 1392 706270520 706271053 1.710000e-76 296.0
11 TraesCS5B01G531100 chr5A 85.811 148 6 7 1228 1368 706484118 706483979 2.360000e-30 143.0
12 TraesCS5B01G531100 chr5A 93.478 46 1 1 652 695 706484659 706484614 1.460000e-07 67.6
13 TraesCS5B01G531100 chr4B 91.325 415 26 2 895 1309 667852537 667852133 1.980000e-155 558.0
14 TraesCS5B01G531100 chr4B 89.231 455 27 13 985 1421 667648800 667649250 1.190000e-152 549.0
15 TraesCS5B01G531100 chr4B 77.003 574 74 37 843 1392 667855712 667855173 2.230000e-70 276.0
16 TraesCS5B01G531100 chr4B 80.997 321 23 16 1239 1530 667848515 667848204 1.060000e-53 220.0
17 TraesCS5B01G531100 chr4B 87.435 191 20 4 535 721 667853424 667853234 1.370000e-52 217.0
18 TraesCS5B01G531100 chr4B 90.351 114 4 3 732 845 667852653 667852547 2.360000e-30 143.0
19 TraesCS5B01G531100 chr4B 97.619 42 1 0 652 693 667648431 667648472 3.140000e-09 73.1
20 TraesCS5B01G531100 chr4B 89.655 58 4 1 780 835 667648567 667648624 3.140000e-09 73.1
21 TraesCS5B01G531100 chr6B 95.652 46 1 1 1531 1575 44840206 44840161 3.140000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G531100 chr5B 689335940 689338218 2278 True 4209.000000 4209 100.000000 1 2279 1 chr5B.!!$R1 2278
1 TraesCS5B01G531100 chrUn 29990047 29990783 736 True 839.000000 839 87.662000 660 1400 1 chrUn.!!$R1 740
2 TraesCS5B01G531100 chrUn 29841637 29842806 1169 False 387.000000 640 91.005750 754 2279 4 chrUn.!!$F3 1525
3 TraesCS5B01G531100 chr5A 706270520 706274316 3796 False 506.500000 717 80.607500 417 1392 2 chr5A.!!$F2 975
4 TraesCS5B01G531100 chr4B 667848204 667855712 7508 True 282.800000 558 85.422200 535 1530 5 chr4B.!!$R1 995
5 TraesCS5B01G531100 chr4B 667648431 667649250 819 False 231.733333 549 92.168333 652 1421 3 chr4B.!!$F1 769

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
80 81 0.037605 GTTGGGAGTCGACCGATGTT 60.038 55.0 13.01 0.0 0.0 2.71 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1321 8907 0.457851 GTCTCTCATGGACGGAGGTG 59.542 60.0 0.0 0.0 33.18 4.0 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.203800 CTATTTGACGCGTCTAGGCA 57.796 50.000 36.27 16.91 0.00 4.75
20 21 2.536365 CTATTTGACGCGTCTAGGCAA 58.464 47.619 36.27 21.71 34.33 4.52
21 22 3.292426 TTTGACGCGTCTAGGCAAA 57.708 47.368 36.27 25.74 43.57 3.68
22 23 1.803334 TTTGACGCGTCTAGGCAAAT 58.197 45.000 36.27 0.00 41.22 2.32
23 24 1.803334 TTGACGCGTCTAGGCAAATT 58.197 45.000 36.27 0.00 33.02 1.82
25 26 1.730064 TGACGCGTCTAGGCAAATTTC 59.270 47.619 36.27 9.71 0.00 2.17
26 27 2.000447 GACGCGTCTAGGCAAATTTCT 59.000 47.619 31.12 0.00 0.00 2.52
27 28 3.184541 GACGCGTCTAGGCAAATTTCTA 58.815 45.455 31.12 0.00 0.00 2.10
28 29 2.928116 ACGCGTCTAGGCAAATTTCTAC 59.072 45.455 5.58 0.00 0.00 2.59
29 30 2.927477 CGCGTCTAGGCAAATTTCTACA 59.073 45.455 0.00 0.00 0.00 2.74
31 32 3.309954 GCGTCTAGGCAAATTTCTACAGG 59.690 47.826 0.00 0.00 0.00 4.00
32 33 3.871594 CGTCTAGGCAAATTTCTACAGGG 59.128 47.826 0.00 0.00 0.00 4.45
33 34 3.628032 GTCTAGGCAAATTTCTACAGGGC 59.372 47.826 0.00 0.00 0.00 5.19
34 35 2.603075 AGGCAAATTTCTACAGGGCA 57.397 45.000 0.00 0.00 0.00 5.36
51 52 1.003051 CACCCACTACCCCCTAGCT 59.997 63.158 0.00 0.00 0.00 3.32
52 53 0.263765 CACCCACTACCCCCTAGCTA 59.736 60.000 0.00 0.00 0.00 3.32
53 54 1.132817 CACCCACTACCCCCTAGCTAT 60.133 57.143 0.00 0.00 0.00 2.97
55 56 0.977395 CCACTACCCCCTAGCTATGC 59.023 60.000 0.00 0.00 0.00 3.14
56 57 1.717032 CACTACCCCCTAGCTATGCA 58.283 55.000 0.00 0.00 0.00 3.96
59 60 2.449730 ACTACCCCCTAGCTATGCACTA 59.550 50.000 0.00 0.00 0.00 2.74
60 61 2.489528 ACCCCCTAGCTATGCACTAA 57.510 50.000 0.00 0.00 0.00 2.24
61 62 2.330216 ACCCCCTAGCTATGCACTAAG 58.670 52.381 0.00 0.00 0.00 2.18
62 63 2.330216 CCCCCTAGCTATGCACTAAGT 58.670 52.381 0.00 0.00 0.00 2.24
63 64 2.706190 CCCCCTAGCTATGCACTAAGTT 59.294 50.000 0.00 0.00 0.00 2.66
64 65 3.495100 CCCCCTAGCTATGCACTAAGTTG 60.495 52.174 0.00 0.00 0.00 3.16
65 66 3.495100 CCCCTAGCTATGCACTAAGTTGG 60.495 52.174 0.00 0.00 0.00 3.77
66 67 3.495100 CCCTAGCTATGCACTAAGTTGGG 60.495 52.174 0.00 0.00 0.00 4.12
67 68 3.388024 CCTAGCTATGCACTAAGTTGGGA 59.612 47.826 6.09 0.00 27.79 4.37
68 69 3.550437 AGCTATGCACTAAGTTGGGAG 57.450 47.619 0.00 0.00 0.00 4.30
71 72 2.386661 ATGCACTAAGTTGGGAGTCG 57.613 50.000 0.00 0.00 0.00 4.18
72 73 1.334160 TGCACTAAGTTGGGAGTCGA 58.666 50.000 0.00 0.00 0.00 4.20
74 75 1.672145 GCACTAAGTTGGGAGTCGACC 60.672 57.143 13.01 3.55 0.00 4.79
75 76 0.886563 ACTAAGTTGGGAGTCGACCG 59.113 55.000 13.01 0.00 0.00 4.79
77 78 1.749634 CTAAGTTGGGAGTCGACCGAT 59.250 52.381 13.01 0.00 0.00 4.18
78 79 0.246635 AAGTTGGGAGTCGACCGATG 59.753 55.000 13.01 0.00 0.00 3.84
79 80 0.898789 AGTTGGGAGTCGACCGATGT 60.899 55.000 13.01 0.00 0.00 3.06
80 81 0.037605 GTTGGGAGTCGACCGATGTT 60.038 55.000 13.01 0.00 0.00 2.71
81 82 1.203052 GTTGGGAGTCGACCGATGTTA 59.797 52.381 13.01 0.00 0.00 2.41
82 83 1.771565 TGGGAGTCGACCGATGTTAT 58.228 50.000 13.01 0.00 0.00 1.89
84 85 1.955080 GGGAGTCGACCGATGTTATCT 59.045 52.381 13.01 0.00 0.00 1.98
85 86 2.361438 GGGAGTCGACCGATGTTATCTT 59.639 50.000 13.01 0.00 0.00 2.40
86 87 3.550436 GGGAGTCGACCGATGTTATCTTC 60.550 52.174 13.01 0.00 0.00 2.87
87 88 3.550436 GGAGTCGACCGATGTTATCTTCC 60.550 52.174 13.01 4.06 0.00 3.46
88 89 2.361438 AGTCGACCGATGTTATCTTCCC 59.639 50.000 13.01 0.00 0.00 3.97
90 91 1.270147 CGACCGATGTTATCTTCCCCC 60.270 57.143 0.00 0.00 0.00 5.40
105 106 3.215671 CCCCCACTGGTTTTGTGAA 57.784 52.632 0.00 0.00 37.60 3.18
106 107 0.750249 CCCCCACTGGTTTTGTGAAC 59.250 55.000 0.00 0.00 37.60 3.18
108 109 1.687996 CCCCACTGGTTTTGTGAACCT 60.688 52.381 9.15 0.00 40.88 3.50
109 110 2.107366 CCCACTGGTTTTGTGAACCTT 58.893 47.619 9.15 0.00 40.88 3.50
110 111 2.159114 CCCACTGGTTTTGTGAACCTTG 60.159 50.000 9.15 6.39 40.88 3.61
111 112 2.495669 CCACTGGTTTTGTGAACCTTGT 59.504 45.455 9.15 5.68 40.88 3.16
112 113 3.697045 CCACTGGTTTTGTGAACCTTGTA 59.303 43.478 9.15 0.00 40.88 2.41
115 116 5.124776 CACTGGTTTTGTGAACCTTGTAGAA 59.875 40.000 9.15 0.00 40.88 2.10
116 117 5.357032 ACTGGTTTTGTGAACCTTGTAGAAG 59.643 40.000 9.15 0.00 40.88 2.85
117 118 9.487026 CACTGGTTTTGTGAACCTTGTAGAAGG 62.487 44.444 16.88 16.88 44.46 3.46
127 128 3.421844 CCTTGTAGAAGGTTCCCTTTGG 58.578 50.000 10.54 0.00 44.82 3.28
128 129 3.181433 CCTTGTAGAAGGTTCCCTTTGGT 60.181 47.826 10.54 0.00 44.82 3.67
129 130 4.470602 CTTGTAGAAGGTTCCCTTTGGTT 58.529 43.478 0.00 0.00 44.82 3.67
130 131 4.529716 TGTAGAAGGTTCCCTTTGGTTT 57.470 40.909 0.00 0.00 44.82 3.27
131 132 4.874199 TGTAGAAGGTTCCCTTTGGTTTT 58.126 39.130 0.00 0.00 44.82 2.43
132 133 5.274015 TGTAGAAGGTTCCCTTTGGTTTTT 58.726 37.500 0.00 0.00 44.82 1.94
151 152 3.767902 TTTGGGCTGGATTTTCTTTGG 57.232 42.857 0.00 0.00 0.00 3.28
152 153 2.397044 TGGGCTGGATTTTCTTTGGT 57.603 45.000 0.00 0.00 0.00 3.67
153 154 2.247358 TGGGCTGGATTTTCTTTGGTC 58.753 47.619 0.00 0.00 0.00 4.02
154 155 2.247358 GGGCTGGATTTTCTTTGGTCA 58.753 47.619 0.00 0.00 0.00 4.02
155 156 2.833943 GGGCTGGATTTTCTTTGGTCAT 59.166 45.455 0.00 0.00 0.00 3.06
157 158 3.259123 GGCTGGATTTTCTTTGGTCATGT 59.741 43.478 0.00 0.00 0.00 3.21
158 159 4.262592 GGCTGGATTTTCTTTGGTCATGTT 60.263 41.667 0.00 0.00 0.00 2.71
159 160 5.299949 GCTGGATTTTCTTTGGTCATGTTT 58.700 37.500 0.00 0.00 0.00 2.83
160 161 5.759763 GCTGGATTTTCTTTGGTCATGTTTT 59.240 36.000 0.00 0.00 0.00 2.43
163 164 7.507829 TGGATTTTCTTTGGTCATGTTTTCAT 58.492 30.769 0.00 0.00 41.78 2.57
165 166 7.148755 GGATTTTCTTTGGTCATGTTTTCATCG 60.149 37.037 0.00 0.00 38.64 3.84
166 167 6.384258 TTTCTTTGGTCATGTTTTCATCGA 57.616 33.333 0.00 0.00 38.64 3.59
167 168 5.356882 TCTTTGGTCATGTTTTCATCGAC 57.643 39.130 0.00 0.00 38.64 4.20
169 170 5.530915 TCTTTGGTCATGTTTTCATCGACTT 59.469 36.000 0.00 0.00 38.64 3.01
170 171 5.766150 TTGGTCATGTTTTCATCGACTTT 57.234 34.783 0.00 0.00 38.64 2.66
172 173 6.142818 TGGTCATGTTTTCATCGACTTTTT 57.857 33.333 0.00 0.00 38.64 1.94
205 206 8.149973 TGTCGAGCTTTTTAAAAATACAGAGT 57.850 30.769 13.55 0.00 0.00 3.24
206 207 8.617809 TGTCGAGCTTTTTAAAAATACAGAGTT 58.382 29.630 13.55 0.00 0.00 3.01
251 252 2.742053 TGTTCTTACAATCTCGCAAGGC 59.258 45.455 0.00 0.00 38.47 4.35
253 254 1.277842 TCTTACAATCTCGCAAGGCCA 59.722 47.619 5.01 0.00 38.47 5.36
254 255 1.398390 CTTACAATCTCGCAAGGCCAC 59.602 52.381 5.01 0.00 38.47 5.01
255 256 0.739462 TACAATCTCGCAAGGCCACG 60.739 55.000 5.01 5.92 38.47 4.94
256 257 3.127533 AATCTCGCAAGGCCACGC 61.128 61.111 5.01 5.81 38.47 5.34
258 259 4.742201 TCTCGCAAGGCCACGCTC 62.742 66.667 5.01 0.00 38.47 5.03
260 261 4.617520 TCGCAAGGCCACGCTCAA 62.618 61.111 5.01 0.00 38.47 3.02
261 262 4.093952 CGCAAGGCCACGCTCAAG 62.094 66.667 5.01 0.00 0.00 3.02
272 273 3.741476 GCTCAAGGCGCAGGTTGG 61.741 66.667 10.83 5.29 0.00 3.77
273 274 3.741476 CTCAAGGCGCAGGTTGGC 61.741 66.667 10.83 0.00 0.00 4.52
274 275 4.577677 TCAAGGCGCAGGTTGGCA 62.578 61.111 10.83 0.00 0.00 4.92
275 276 4.347453 CAAGGCGCAGGTTGGCAC 62.347 66.667 10.83 0.00 0.00 5.01
276 277 4.586235 AAGGCGCAGGTTGGCACT 62.586 61.111 10.83 0.00 0.00 4.40
277 278 3.190738 AAGGCGCAGGTTGGCACTA 62.191 57.895 10.83 0.00 0.00 2.74
278 279 2.438434 GGCGCAGGTTGGCACTAT 60.438 61.111 10.83 0.00 0.00 2.12
279 280 1.153249 GGCGCAGGTTGGCACTATA 60.153 57.895 10.83 0.00 0.00 1.31
280 281 1.436983 GGCGCAGGTTGGCACTATAC 61.437 60.000 10.83 0.00 0.00 1.47
281 282 1.436983 GCGCAGGTTGGCACTATACC 61.437 60.000 0.30 0.00 0.00 2.73
282 283 0.178068 CGCAGGTTGGCACTATACCT 59.822 55.000 2.71 2.71 42.92 3.08
283 284 1.406887 CGCAGGTTGGCACTATACCTT 60.407 52.381 5.86 0.00 40.24 3.50
284 285 2.017049 GCAGGTTGGCACTATACCTTG 58.983 52.381 5.86 4.09 40.24 3.61
285 286 2.017049 CAGGTTGGCACTATACCTTGC 58.983 52.381 5.86 0.00 40.24 4.01
286 287 1.633432 AGGTTGGCACTATACCTTGCA 59.367 47.619 2.71 0.00 39.19 4.08
287 288 2.242196 AGGTTGGCACTATACCTTGCAT 59.758 45.455 2.71 0.00 39.19 3.96
288 289 3.458118 AGGTTGGCACTATACCTTGCATA 59.542 43.478 2.71 0.00 39.19 3.14
289 290 4.080015 AGGTTGGCACTATACCTTGCATAA 60.080 41.667 2.71 0.00 39.19 1.90
291 292 5.301805 GGTTGGCACTATACCTTGCATAAAT 59.698 40.000 0.00 0.00 40.75 1.40
293 294 5.070001 TGGCACTATACCTTGCATAAATCC 58.930 41.667 0.00 0.00 40.75 3.01
294 295 5.070001 GGCACTATACCTTGCATAAATCCA 58.930 41.667 0.00 0.00 40.75 3.41
296 297 5.048713 GCACTATACCTTGCATAAATCCACC 60.049 44.000 0.00 0.00 38.68 4.61
298 299 6.017109 CACTATACCTTGCATAAATCCACCAC 60.017 42.308 0.00 0.00 0.00 4.16
299 300 3.168035 ACCTTGCATAAATCCACCACA 57.832 42.857 0.00 0.00 0.00 4.17
300 301 2.825532 ACCTTGCATAAATCCACCACAC 59.174 45.455 0.00 0.00 0.00 3.82
301 302 2.824936 CCTTGCATAAATCCACCACACA 59.175 45.455 0.00 0.00 0.00 3.72
302 303 3.257873 CCTTGCATAAATCCACCACACAA 59.742 43.478 0.00 0.00 0.00 3.33
303 304 3.932545 TGCATAAATCCACCACACAAC 57.067 42.857 0.00 0.00 0.00 3.32
304 305 3.495331 TGCATAAATCCACCACACAACT 58.505 40.909 0.00 0.00 0.00 3.16
305 306 3.505680 TGCATAAATCCACCACACAACTC 59.494 43.478 0.00 0.00 0.00 3.01
306 307 3.758554 GCATAAATCCACCACACAACTCT 59.241 43.478 0.00 0.00 0.00 3.24
308 309 3.864789 AAATCCACCACACAACTCTCT 57.135 42.857 0.00 0.00 0.00 3.10
311 312 1.611977 TCCACCACACAACTCTCTACG 59.388 52.381 0.00 0.00 0.00 3.51
313 314 2.607282 CCACCACACAACTCTCTACGTC 60.607 54.545 0.00 0.00 0.00 4.34
315 316 1.611977 CCACACAACTCTCTACGTCCA 59.388 52.381 0.00 0.00 0.00 4.02
316 317 2.035449 CCACACAACTCTCTACGTCCAA 59.965 50.000 0.00 0.00 0.00 3.53
317 318 3.491964 CCACACAACTCTCTACGTCCAAA 60.492 47.826 0.00 0.00 0.00 3.28
318 319 4.307432 CACACAACTCTCTACGTCCAAAT 58.693 43.478 0.00 0.00 0.00 2.32
319 320 4.750098 CACACAACTCTCTACGTCCAAATT 59.250 41.667 0.00 0.00 0.00 1.82
320 321 4.750098 ACACAACTCTCTACGTCCAAATTG 59.250 41.667 0.00 0.00 0.00 2.32
321 322 4.750098 CACAACTCTCTACGTCCAAATTGT 59.250 41.667 0.00 0.00 0.00 2.71
325 326 3.734463 TCTCTACGTCCAAATTGTGCAA 58.266 40.909 0.00 0.00 0.00 4.08
327 328 3.734463 TCTACGTCCAAATTGTGCAAGA 58.266 40.909 0.00 0.00 0.00 3.02
328 329 2.774439 ACGTCCAAATTGTGCAAGAC 57.226 45.000 0.00 0.00 0.00 3.01
330 331 3.472652 ACGTCCAAATTGTGCAAGACTA 58.527 40.909 0.00 0.00 0.00 2.59
332 333 3.664276 CGTCCAAATTGTGCAAGACTACG 60.664 47.826 0.00 0.00 0.00 3.51
334 335 3.249799 TCCAAATTGTGCAAGACTACGTG 59.750 43.478 0.00 0.00 0.00 4.49
343 344 3.000727 GCAAGACTACGTGCTAAACCAT 58.999 45.455 0.00 0.00 45.26 3.55
344 345 3.435671 GCAAGACTACGTGCTAAACCATT 59.564 43.478 0.00 0.00 45.26 3.16
345 346 4.628333 GCAAGACTACGTGCTAAACCATTA 59.372 41.667 0.00 0.00 45.26 1.90
346 347 5.121142 GCAAGACTACGTGCTAAACCATTAA 59.879 40.000 0.00 0.00 45.26 1.40
347 348 6.531439 CAAGACTACGTGCTAAACCATTAAC 58.469 40.000 0.00 0.00 0.00 2.01
348 349 5.173664 AGACTACGTGCTAAACCATTAACC 58.826 41.667 0.00 0.00 0.00 2.85
349 350 5.046807 AGACTACGTGCTAAACCATTAACCT 60.047 40.000 0.00 0.00 0.00 3.50
350 351 5.554070 ACTACGTGCTAAACCATTAACCTT 58.446 37.500 0.00 0.00 0.00 3.50
351 352 5.999600 ACTACGTGCTAAACCATTAACCTTT 59.000 36.000 0.00 0.00 0.00 3.11
353 354 5.067954 ACGTGCTAAACCATTAACCTTTCT 58.932 37.500 0.00 0.00 0.00 2.52
354 355 5.533528 ACGTGCTAAACCATTAACCTTTCTT 59.466 36.000 0.00 0.00 0.00 2.52
356 357 6.072673 CGTGCTAAACCATTAACCTTTCTTCT 60.073 38.462 0.00 0.00 0.00 2.85
357 358 7.118680 CGTGCTAAACCATTAACCTTTCTTCTA 59.881 37.037 0.00 0.00 0.00 2.10
360 361 9.011095 GCTAAACCATTAACCTTTCTTCTACTT 57.989 33.333 0.00 0.00 0.00 2.24
363 364 7.215719 ACCATTAACCTTTCTTCTACTTTGC 57.784 36.000 0.00 0.00 0.00 3.68
364 365 6.775629 ACCATTAACCTTTCTTCTACTTTGCA 59.224 34.615 0.00 0.00 0.00 4.08
365 366 7.286775 ACCATTAACCTTTCTTCTACTTTGCAA 59.713 33.333 0.00 0.00 0.00 4.08
367 368 8.968242 CATTAACCTTTCTTCTACTTTGCAAAC 58.032 33.333 8.05 0.00 0.00 2.93
369 370 6.775594 ACCTTTCTTCTACTTTGCAAACTT 57.224 33.333 8.05 0.51 0.00 2.66
372 373 7.093945 ACCTTTCTTCTACTTTGCAAACTTCAA 60.094 33.333 8.05 0.00 0.00 2.69
374 375 7.391148 TTCTTCTACTTTGCAAACTTCAACT 57.609 32.000 8.05 0.00 0.00 3.16
377 378 3.874392 ACTTTGCAAACTTCAACTGCT 57.126 38.095 8.05 0.00 37.00 4.24
379 380 2.582728 TTGCAAACTTCAACTGCTGG 57.417 45.000 0.00 0.00 37.00 4.85
380 381 1.761449 TGCAAACTTCAACTGCTGGA 58.239 45.000 0.00 0.00 37.00 3.86
381 382 2.309613 TGCAAACTTCAACTGCTGGAT 58.690 42.857 0.00 0.00 37.00 3.41
382 383 2.694628 TGCAAACTTCAACTGCTGGATT 59.305 40.909 0.00 0.00 37.00 3.01
383 384 3.132646 TGCAAACTTCAACTGCTGGATTT 59.867 39.130 0.00 0.00 37.00 2.17
384 385 3.737774 GCAAACTTCAACTGCTGGATTTC 59.262 43.478 0.00 0.00 33.20 2.17
386 387 3.515602 ACTTCAACTGCTGGATTTCCT 57.484 42.857 0.00 0.00 36.82 3.36
387 388 3.837355 ACTTCAACTGCTGGATTTCCTT 58.163 40.909 0.00 0.00 36.82 3.36
389 390 3.228188 TCAACTGCTGGATTTCCTTGT 57.772 42.857 0.00 0.00 36.82 3.16
390 391 3.149196 TCAACTGCTGGATTTCCTTGTC 58.851 45.455 0.00 0.00 36.82 3.18
394 395 1.281867 TGCTGGATTTCCTTGTCCGAT 59.718 47.619 0.00 0.00 37.32 4.18
396 397 3.134458 GCTGGATTTCCTTGTCCGATAG 58.866 50.000 0.00 0.00 37.32 2.08
397 398 3.432326 GCTGGATTTCCTTGTCCGATAGT 60.432 47.826 0.00 0.00 37.32 2.12
398 399 4.122776 CTGGATTTCCTTGTCCGATAGTG 58.877 47.826 0.00 0.00 37.32 2.74
400 401 3.871594 GGATTTCCTTGTCCGATAGTGTG 59.128 47.826 0.00 0.00 0.00 3.82
403 404 4.610605 TTCCTTGTCCGATAGTGTGAAA 57.389 40.909 0.00 0.00 0.00 2.69
405 406 5.160607 TCCTTGTCCGATAGTGTGAAATT 57.839 39.130 0.00 0.00 0.00 1.82
406 407 5.556915 TCCTTGTCCGATAGTGTGAAATTT 58.443 37.500 0.00 0.00 0.00 1.82
407 408 5.642063 TCCTTGTCCGATAGTGTGAAATTTC 59.358 40.000 11.41 11.41 0.00 2.17
408 409 5.163754 CCTTGTCCGATAGTGTGAAATTTCC 60.164 44.000 15.48 7.59 0.00 3.13
409 410 4.900684 TGTCCGATAGTGTGAAATTTCCA 58.099 39.130 15.48 9.99 0.00 3.53
410 411 5.309638 TGTCCGATAGTGTGAAATTTCCAA 58.690 37.500 15.48 0.88 0.00 3.53
411 412 5.180492 TGTCCGATAGTGTGAAATTTCCAAC 59.820 40.000 15.48 12.82 0.00 3.77
412 413 5.411669 GTCCGATAGTGTGAAATTTCCAACT 59.588 40.000 20.40 20.40 0.00 3.16
413 414 6.001460 TCCGATAGTGTGAAATTTCCAACTT 58.999 36.000 21.28 12.81 0.00 2.66
415 416 6.582295 CCGATAGTGTGAAATTTCCAACTTTG 59.418 38.462 21.28 13.93 0.00 2.77
416 417 7.138736 CGATAGTGTGAAATTTCCAACTTTGT 58.861 34.615 21.28 12.09 0.00 2.83
417 418 7.647715 CGATAGTGTGAAATTTCCAACTTTGTT 59.352 33.333 21.28 9.62 0.00 2.83
418 419 9.313118 GATAGTGTGAAATTTCCAACTTTGTTT 57.687 29.630 21.28 5.82 0.00 2.83
419 420 7.977789 AGTGTGAAATTTCCAACTTTGTTTT 57.022 28.000 15.48 0.00 0.00 2.43
500 501 7.561021 TTTTCCTTTTGTTCCATTTTAAGCC 57.439 32.000 0.00 0.00 0.00 4.35
501 502 6.493189 TTCCTTTTGTTCCATTTTAAGCCT 57.507 33.333 0.00 0.00 0.00 4.58
502 503 6.096673 TCCTTTTGTTCCATTTTAAGCCTC 57.903 37.500 0.00 0.00 0.00 4.70
503 504 5.600484 TCCTTTTGTTCCATTTTAAGCCTCA 59.400 36.000 0.00 0.00 0.00 3.86
505 506 6.369615 CCTTTTGTTCCATTTTAAGCCTCATG 59.630 38.462 0.00 0.00 0.00 3.07
506 507 6.662865 TTTGTTCCATTTTAAGCCTCATGA 57.337 33.333 0.00 0.00 0.00 3.07
507 508 6.855763 TTGTTCCATTTTAAGCCTCATGAT 57.144 33.333 0.00 0.00 0.00 2.45
508 509 6.855763 TGTTCCATTTTAAGCCTCATGATT 57.144 33.333 0.00 0.00 0.00 2.57
509 510 7.243604 TGTTCCATTTTAAGCCTCATGATTT 57.756 32.000 0.00 0.00 0.00 2.17
511 512 8.156165 TGTTCCATTTTAAGCCTCATGATTTTT 58.844 29.630 0.00 0.00 0.00 1.94
597 3748 7.642071 ATCATGAACCTTTTTCAAATTCACG 57.358 32.000 0.00 0.00 32.42 4.35
598 3749 6.800543 TCATGAACCTTTTTCAAATTCACGA 58.199 32.000 0.00 0.00 32.42 4.35
600 3751 8.572185 TCATGAACCTTTTTCAAATTCACGATA 58.428 29.630 0.00 0.00 32.42 2.92
714 3911 4.578105 GCACTAGGTACGTCCATACTACTT 59.422 45.833 0.00 0.00 39.02 2.24
721 3918 7.059156 AGGTACGTCCATACTACTTCATAAGT 58.941 38.462 0.00 0.00 41.17 2.24
723 3920 6.770746 ACGTCCATACTACTTCATAAGTGT 57.229 37.500 2.59 2.37 42.84 3.55
725 3922 7.928103 ACGTCCATACTACTTCATAAGTGTAG 58.072 38.462 2.59 0.00 42.84 2.74
727 3924 7.146648 GTCCATACTACTTCATAAGTGTAGCC 58.853 42.308 2.59 0.00 42.84 3.93
728 3925 6.837048 TCCATACTACTTCATAAGTGTAGCCA 59.163 38.462 2.59 0.00 42.84 4.75
729 3926 7.509318 TCCATACTACTTCATAAGTGTAGCCAT 59.491 37.037 2.59 0.00 42.84 4.40
730 3927 7.600375 CCATACTACTTCATAAGTGTAGCCATG 59.400 40.741 2.59 0.00 42.84 3.66
775 4546 0.537188 ACCCTAGTCATGGCGAACTG 59.463 55.000 0.00 0.00 0.00 3.16
777 4548 0.176680 CCTAGTCATGGCGAACTGCT 59.823 55.000 0.00 0.00 45.43 4.24
778 4549 1.409064 CCTAGTCATGGCGAACTGCTA 59.591 52.381 0.00 0.00 45.43 3.49
779 4550 2.464865 CTAGTCATGGCGAACTGCTAC 58.535 52.381 0.00 0.00 45.43 3.58
780 4551 0.898320 AGTCATGGCGAACTGCTACT 59.102 50.000 0.00 0.00 45.43 2.57
781 4552 1.002366 GTCATGGCGAACTGCTACTG 58.998 55.000 0.00 0.00 45.43 2.74
782 4553 0.740868 TCATGGCGAACTGCTACTGC 60.741 55.000 0.00 0.00 45.43 4.40
845 4714 0.179045 ATTAGCTAGGTTGCCAGCCG 60.179 55.000 0.00 0.00 38.61 5.52
983 4882 2.680841 CGAGAGTGAGGAGTAGACCAAG 59.319 54.545 0.00 0.00 0.00 3.61
1321 8907 0.899019 GGCTCAGCTATAGGTAGGCC 59.101 60.000 22.67 22.67 36.07 5.19
1427 9036 4.567959 GCTGCAATAAAATGTTGGGTGATC 59.432 41.667 0.00 0.00 0.00 2.92
1428 9037 4.742417 TGCAATAAAATGTTGGGTGATCG 58.258 39.130 0.00 0.00 0.00 3.69
1429 9038 4.460731 TGCAATAAAATGTTGGGTGATCGA 59.539 37.500 0.00 0.00 0.00 3.59
1430 9039 5.126869 TGCAATAAAATGTTGGGTGATCGAT 59.873 36.000 0.00 0.00 0.00 3.59
1432 9041 6.563422 CAATAAAATGTTGGGTGATCGATGT 58.437 36.000 0.54 0.00 0.00 3.06
1433 9042 4.439305 AAAATGTTGGGTGATCGATGTG 57.561 40.909 0.54 0.00 0.00 3.21
1434 9043 1.382522 ATGTTGGGTGATCGATGTGC 58.617 50.000 0.54 0.00 0.00 4.57
1443 9054 4.335315 GGGTGATCGATGTGCTGAATAAAA 59.665 41.667 0.54 0.00 0.00 1.52
1449 9060 6.741992 TCGATGTGCTGAATAAAATGACTT 57.258 33.333 0.00 0.00 0.00 3.01
1450 9061 7.144722 TCGATGTGCTGAATAAAATGACTTT 57.855 32.000 0.00 0.00 0.00 2.66
1451 9062 8.262715 TCGATGTGCTGAATAAAATGACTTTA 57.737 30.769 0.00 0.00 34.00 1.85
1452 9063 8.726068 TCGATGTGCTGAATAAAATGACTTTAA 58.274 29.630 0.00 0.00 33.20 1.52
1469 9080 7.621796 TGACTTTAATTTCCTACCTTCTCCTC 58.378 38.462 0.00 0.00 0.00 3.71
1470 9081 7.458170 TGACTTTAATTTCCTACCTTCTCCTCT 59.542 37.037 0.00 0.00 0.00 3.69
1475 9086 4.891992 TTCCTACCTTCTCCTCTGTTTG 57.108 45.455 0.00 0.00 0.00 2.93
1479 9090 1.001406 ACCTTCTCCTCTGTTTGCTCG 59.999 52.381 0.00 0.00 0.00 5.03
1483 9094 0.739112 CTCCTCTGTTTGCTCGCTCC 60.739 60.000 0.00 0.00 0.00 4.70
1484 9095 1.004560 CCTCTGTTTGCTCGCTCCA 60.005 57.895 0.00 0.00 0.00 3.86
1485 9096 0.392193 CCTCTGTTTGCTCGCTCCAT 60.392 55.000 0.00 0.00 0.00 3.41
1486 9097 1.005340 CTCTGTTTGCTCGCTCCATC 58.995 55.000 0.00 0.00 0.00 3.51
1487 9098 0.610174 TCTGTTTGCTCGCTCCATCT 59.390 50.000 0.00 0.00 0.00 2.90
1497 9108 1.002430 TCGCTCCATCTTCACTTGCTT 59.998 47.619 0.00 0.00 0.00 3.91
1501 9112 4.083324 CGCTCCATCTTCACTTGCTTTAAA 60.083 41.667 0.00 0.00 0.00 1.52
1507 9118 8.257306 TCCATCTTCACTTGCTTTAAACTTTTT 58.743 29.630 0.00 0.00 0.00 1.94
1511 9122 9.361315 TCTTCACTTGCTTTAAACTTTTTAACC 57.639 29.630 0.00 0.00 0.00 2.85
1532 9143 7.940178 AACCAAAATCACGTAAAAGAATTCC 57.060 32.000 0.65 0.00 0.00 3.01
1533 9144 6.452242 ACCAAAATCACGTAAAAGAATTCCC 58.548 36.000 0.65 0.00 0.00 3.97
1534 9145 6.266786 ACCAAAATCACGTAAAAGAATTCCCT 59.733 34.615 0.65 0.00 0.00 4.20
1535 9146 6.806739 CCAAAATCACGTAAAAGAATTCCCTC 59.193 38.462 0.65 0.00 0.00 4.30
1536 9147 5.796350 AATCACGTAAAAGAATTCCCTCG 57.204 39.130 0.65 3.54 0.00 4.63
1537 9148 4.524316 TCACGTAAAAGAATTCCCTCGA 57.476 40.909 0.65 0.00 0.00 4.04
1538 9149 5.080969 TCACGTAAAAGAATTCCCTCGAT 57.919 39.130 0.65 0.00 0.00 3.59
1539 9150 5.107133 TCACGTAAAAGAATTCCCTCGATC 58.893 41.667 0.65 0.00 0.00 3.69
1540 9151 4.270325 CACGTAAAAGAATTCCCTCGATCC 59.730 45.833 0.65 0.00 0.00 3.36
1541 9152 4.081309 ACGTAAAAGAATTCCCTCGATCCA 60.081 41.667 0.65 0.00 0.00 3.41
1542 9153 4.873827 CGTAAAAGAATTCCCTCGATCCAA 59.126 41.667 0.65 0.00 0.00 3.53
1543 9154 5.353123 CGTAAAAGAATTCCCTCGATCCAAA 59.647 40.000 0.65 0.00 0.00 3.28
1544 9155 5.644977 AAAAGAATTCCCTCGATCCAAAC 57.355 39.130 0.65 0.00 0.00 2.93
1545 9156 4.576330 AAGAATTCCCTCGATCCAAACT 57.424 40.909 0.65 0.00 0.00 2.66
1546 9157 5.693769 AAGAATTCCCTCGATCCAAACTA 57.306 39.130 0.65 0.00 0.00 2.24
1547 9158 5.693769 AGAATTCCCTCGATCCAAACTAA 57.306 39.130 0.65 0.00 0.00 2.24
1548 9159 6.253946 AGAATTCCCTCGATCCAAACTAAT 57.746 37.500 0.65 0.00 0.00 1.73
1549 9160 6.663734 AGAATTCCCTCGATCCAAACTAATT 58.336 36.000 0.65 0.00 0.00 1.40
1550 9161 6.543831 AGAATTCCCTCGATCCAAACTAATTG 59.456 38.462 0.65 0.00 38.84 2.32
1551 9162 4.837093 TCCCTCGATCCAAACTAATTGT 57.163 40.909 0.00 0.00 37.32 2.71
1552 9163 5.174037 TCCCTCGATCCAAACTAATTGTT 57.826 39.130 0.00 0.00 41.29 2.83
1553 9164 4.941263 TCCCTCGATCCAAACTAATTGTTG 59.059 41.667 0.00 0.00 39.13 3.33
1554 9165 4.438744 CCCTCGATCCAAACTAATTGTTGC 60.439 45.833 0.00 0.00 39.13 4.17
1555 9166 4.155826 CCTCGATCCAAACTAATTGTTGCA 59.844 41.667 0.00 0.00 39.13 4.08
1556 9167 5.295431 TCGATCCAAACTAATTGTTGCAG 57.705 39.130 0.00 0.00 39.13 4.41
1557 9168 3.853671 CGATCCAAACTAATTGTTGCAGC 59.146 43.478 0.00 0.00 39.13 5.25
1558 9169 4.379813 CGATCCAAACTAATTGTTGCAGCT 60.380 41.667 1.17 0.00 39.13 4.24
1559 9170 4.503741 TCCAAACTAATTGTTGCAGCTC 57.496 40.909 1.17 0.00 39.13 4.09
1560 9171 4.144297 TCCAAACTAATTGTTGCAGCTCT 58.856 39.130 1.17 0.00 39.13 4.09
1561 9172 5.312895 TCCAAACTAATTGTTGCAGCTCTA 58.687 37.500 1.17 0.00 39.13 2.43
1562 9173 5.412594 TCCAAACTAATTGTTGCAGCTCTAG 59.587 40.000 1.17 2.78 39.13 2.43
1563 9174 5.182001 CCAAACTAATTGTTGCAGCTCTAGT 59.818 40.000 1.17 3.39 39.13 2.57
1564 9175 6.371548 CCAAACTAATTGTTGCAGCTCTAGTA 59.628 38.462 1.17 0.00 39.13 1.82
1565 9176 6.969828 AACTAATTGTTGCAGCTCTAGTAC 57.030 37.500 1.17 0.00 37.52 2.73
1566 9177 6.037786 ACTAATTGTTGCAGCTCTAGTACA 57.962 37.500 1.17 0.00 0.00 2.90
1567 9178 6.464222 ACTAATTGTTGCAGCTCTAGTACAA 58.536 36.000 1.17 0.12 0.00 2.41
1568 9179 5.613358 AATTGTTGCAGCTCTAGTACAAC 57.387 39.130 1.17 0.00 40.72 3.32
1569 9180 4.336889 TTGTTGCAGCTCTAGTACAACT 57.663 40.909 1.17 0.00 40.88 3.16
1570 9181 4.336889 TGTTGCAGCTCTAGTACAACTT 57.663 40.909 1.17 0.00 40.88 2.66
1571 9182 4.703897 TGTTGCAGCTCTAGTACAACTTT 58.296 39.130 1.17 0.00 40.88 2.66
1572 9183 5.849510 TGTTGCAGCTCTAGTACAACTTTA 58.150 37.500 1.17 0.00 40.88 1.85
1573 9184 5.926542 TGTTGCAGCTCTAGTACAACTTTAG 59.073 40.000 1.17 0.00 40.88 1.85
1574 9185 5.723672 TGCAGCTCTAGTACAACTTTAGT 57.276 39.130 0.00 0.00 0.00 2.24
1575 9186 6.097915 TGCAGCTCTAGTACAACTTTAGTT 57.902 37.500 0.00 0.00 39.12 2.24
1587 9198 4.903045 AACTTTAGTTGAATCGGAGGGA 57.097 40.909 0.00 0.00 36.80 4.20
1588 9199 4.473477 ACTTTAGTTGAATCGGAGGGAG 57.527 45.455 0.00 0.00 0.00 4.30
1589 9200 3.838903 ACTTTAGTTGAATCGGAGGGAGT 59.161 43.478 0.00 0.00 0.00 3.85
1590 9201 5.021458 ACTTTAGTTGAATCGGAGGGAGTA 58.979 41.667 0.00 0.00 0.00 2.59
1591 9202 4.996788 TTAGTTGAATCGGAGGGAGTAC 57.003 45.455 0.00 0.00 0.00 2.73
1592 9203 2.108970 AGTTGAATCGGAGGGAGTACC 58.891 52.381 0.00 0.00 40.67 3.34
1609 9220 7.549615 GGAGTACCCACAAATAAATCAGTAC 57.450 40.000 0.00 0.00 34.14 2.73
1610 9221 7.107542 GGAGTACCCACAAATAAATCAGTACA 58.892 38.462 0.00 0.00 33.06 2.90
1611 9222 7.065443 GGAGTACCCACAAATAAATCAGTACAC 59.935 40.741 0.00 0.00 33.06 2.90
1612 9223 7.455058 AGTACCCACAAATAAATCAGTACACA 58.545 34.615 0.00 0.00 33.06 3.72
1613 9224 8.107095 AGTACCCACAAATAAATCAGTACACAT 58.893 33.333 0.00 0.00 33.06 3.21
1614 9225 7.775053 ACCCACAAATAAATCAGTACACATT 57.225 32.000 0.00 0.00 0.00 2.71
1615 9226 7.601856 ACCCACAAATAAATCAGTACACATTG 58.398 34.615 0.00 0.00 0.00 2.82
1616 9227 6.531240 CCCACAAATAAATCAGTACACATTGC 59.469 38.462 0.00 0.00 0.00 3.56
1617 9228 7.089538 CCACAAATAAATCAGTACACATTGCA 58.910 34.615 0.00 0.00 0.00 4.08
1618 9229 7.274033 CCACAAATAAATCAGTACACATTGCAG 59.726 37.037 0.00 0.00 0.00 4.41
1619 9230 6.808212 ACAAATAAATCAGTACACATTGCAGC 59.192 34.615 0.00 0.00 0.00 5.25
1620 9231 6.513806 AATAAATCAGTACACATTGCAGCA 57.486 33.333 0.00 0.00 0.00 4.41
1643 9254 7.332926 AGCAGAAAACATGACATACTCTACAAG 59.667 37.037 0.00 0.00 0.00 3.16
1707 9318 0.979665 ACACCAGAGGGACACATCTG 59.020 55.000 2.69 2.69 42.14 2.90
1728 9339 7.330900 TCTGTTATCACTACTGTTAGCCTAC 57.669 40.000 0.00 0.00 0.00 3.18
1739 9350 6.969993 ACTGTTAGCCTACCATTTGAAAAA 57.030 33.333 0.00 0.00 0.00 1.94
1792 9407 1.024046 TGCGTCCACACCATGCATAC 61.024 55.000 0.00 0.00 30.60 2.39
1823 9438 2.859165 ACTCCATCGTGTGTTGGAAT 57.141 45.000 0.00 0.00 42.11 3.01
1838 9453 5.580691 GTGTTGGAATAAGATGACGATGACA 59.419 40.000 0.00 0.00 0.00 3.58
1896 9553 2.487775 TCTATTAGCAAAGGCCTCCCA 58.512 47.619 5.23 0.00 42.56 4.37
1900 9557 0.777446 TAGCAAAGGCCTCCCACTTT 59.223 50.000 5.23 0.00 42.56 2.66
1914 9571 6.127842 GCCTCCCACTTTGATTTCGTATAAAA 60.128 38.462 0.00 0.00 0.00 1.52
1975 9632 0.250513 AAACCACGCCCAAAAGCAAA 59.749 45.000 0.00 0.00 0.00 3.68
1976 9633 0.461163 AACCACGCCCAAAAGCAAAC 60.461 50.000 0.00 0.00 0.00 2.93
2005 9662 4.130857 TCCAGACTTCAAAAATACGCACA 58.869 39.130 0.00 0.00 0.00 4.57
2012 9669 4.274421 TCAAAAATACGCACACACGAAA 57.726 36.364 0.00 0.00 36.70 3.46
2039 9696 6.860023 CCTTGTGTTGAAACTTTCATCAGATC 59.140 38.462 13.35 5.56 39.34 2.75
2068 9725 1.002250 GTCTCACACACTGCCGTACG 61.002 60.000 8.69 8.69 0.00 3.67
2090 9747 0.454600 CACAATGCATGTCCAGCCTC 59.545 55.000 0.00 0.00 41.46 4.70
2094 9751 0.917533 ATGCATGTCCAGCCTCTTCT 59.082 50.000 0.00 0.00 0.00 2.85
2135 9792 1.484038 GCCAAATGAAGGCCCATGTA 58.516 50.000 0.00 0.00 46.50 2.29
2136 9793 2.041701 GCCAAATGAAGGCCCATGTAT 58.958 47.619 0.00 0.00 46.50 2.29
2137 9794 3.230134 GCCAAATGAAGGCCCATGTATA 58.770 45.455 0.00 0.00 46.50 1.47
2138 9795 3.834231 GCCAAATGAAGGCCCATGTATAT 59.166 43.478 0.00 0.00 46.50 0.86
2183 9840 4.524316 TTTTTGATGCTTCCACCATGAG 57.476 40.909 0.00 0.00 0.00 2.90
2194 9851 0.105862 CACCATGAGGATTGGGGCAT 60.106 55.000 0.00 0.00 38.64 4.40
2236 9893 4.026052 CCATCAAAAAGGCAGGATTAGGT 58.974 43.478 0.00 0.00 0.00 3.08
2257 9914 1.273048 GCAGACCATGTTGCCAAATGA 59.727 47.619 3.45 0.00 34.28 2.57
2275 9932 5.520748 AATGAAAGACCCACTTATCTGGT 57.479 39.130 0.00 0.00 37.93 4.00
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.203800 TGCCTAGACGCGTCAAATAG 57.796 50.000 37.85 28.50 0.00 1.73
1 2 2.658373 TTGCCTAGACGCGTCAAATA 57.342 45.000 37.85 21.89 0.00 1.40
2 3 1.803334 TTTGCCTAGACGCGTCAAAT 58.197 45.000 37.85 21.95 0.00 2.32
3 4 1.803334 ATTTGCCTAGACGCGTCAAA 58.197 45.000 37.85 28.53 0.00 2.69
4 5 1.803334 AATTTGCCTAGACGCGTCAA 58.197 45.000 37.85 23.55 0.00 3.18
5 6 1.730064 GAAATTTGCCTAGACGCGTCA 59.270 47.619 37.85 23.27 0.00 4.35
6 7 2.000447 AGAAATTTGCCTAGACGCGTC 59.000 47.619 31.30 31.30 0.00 5.19
8 9 2.927477 TGTAGAAATTTGCCTAGACGCG 59.073 45.455 3.53 3.53 0.00 6.01
9 10 3.309954 CCTGTAGAAATTTGCCTAGACGC 59.690 47.826 0.00 0.00 0.00 5.19
10 11 3.871594 CCCTGTAGAAATTTGCCTAGACG 59.128 47.826 0.00 0.00 0.00 4.18
11 12 3.628032 GCCCTGTAGAAATTTGCCTAGAC 59.372 47.826 0.00 0.00 0.00 2.59
12 13 3.265737 TGCCCTGTAGAAATTTGCCTAGA 59.734 43.478 0.00 0.00 0.00 2.43
13 14 3.378427 GTGCCCTGTAGAAATTTGCCTAG 59.622 47.826 0.00 0.00 0.00 3.02
14 15 3.352648 GTGCCCTGTAGAAATTTGCCTA 58.647 45.455 0.00 0.00 0.00 3.93
15 16 2.171003 GTGCCCTGTAGAAATTTGCCT 58.829 47.619 0.00 0.00 0.00 4.75
16 17 1.204704 GGTGCCCTGTAGAAATTTGCC 59.795 52.381 0.00 0.00 0.00 4.52
17 18 1.204704 GGGTGCCCTGTAGAAATTTGC 59.795 52.381 0.00 0.00 0.00 3.68
19 20 2.110011 AGTGGGTGCCCTGTAGAAATTT 59.890 45.455 8.91 0.00 36.94 1.82
20 21 1.710809 AGTGGGTGCCCTGTAGAAATT 59.289 47.619 8.91 0.00 36.94 1.82
21 22 1.372501 AGTGGGTGCCCTGTAGAAAT 58.627 50.000 8.91 0.00 36.94 2.17
22 23 1.626825 GTAGTGGGTGCCCTGTAGAAA 59.373 52.381 8.91 0.00 36.94 2.52
23 24 1.272807 GTAGTGGGTGCCCTGTAGAA 58.727 55.000 8.91 0.00 36.94 2.10
25 26 1.905512 GGTAGTGGGTGCCCTGTAG 59.094 63.158 8.91 0.00 36.94 2.74
26 27 4.140354 GGTAGTGGGTGCCCTGTA 57.860 61.111 8.91 0.00 36.94 2.74
31 32 2.041596 TAGGGGGTAGTGGGTGCC 59.958 66.667 0.00 0.00 0.00 5.01
32 33 2.743179 GCTAGGGGGTAGTGGGTGC 61.743 68.421 0.00 0.00 0.00 5.01
33 34 0.263765 TAGCTAGGGGGTAGTGGGTG 59.736 60.000 0.00 0.00 0.00 4.61
34 35 1.132817 CATAGCTAGGGGGTAGTGGGT 60.133 57.143 0.00 0.00 0.00 4.51
36 37 0.977395 GCATAGCTAGGGGGTAGTGG 59.023 60.000 7.62 0.00 0.00 4.00
37 38 1.344763 GTGCATAGCTAGGGGGTAGTG 59.655 57.143 7.62 0.00 0.00 2.74
38 39 1.220750 AGTGCATAGCTAGGGGGTAGT 59.779 52.381 7.62 0.00 0.00 2.73
39 40 2.016905 AGTGCATAGCTAGGGGGTAG 57.983 55.000 7.62 0.00 0.00 3.18
40 41 3.116862 ACTTAGTGCATAGCTAGGGGGTA 60.117 47.826 7.62 0.00 0.00 3.69
42 43 2.330216 ACTTAGTGCATAGCTAGGGGG 58.670 52.381 7.62 0.00 0.00 5.40
43 44 3.495100 CCAACTTAGTGCATAGCTAGGGG 60.495 52.174 7.62 0.00 0.00 4.79
47 48 4.030913 ACTCCCAACTTAGTGCATAGCTA 58.969 43.478 0.00 0.00 0.00 3.32
51 52 3.093814 TCGACTCCCAACTTAGTGCATA 58.906 45.455 0.00 0.00 0.00 3.14
52 53 1.899814 TCGACTCCCAACTTAGTGCAT 59.100 47.619 0.00 0.00 0.00 3.96
53 54 1.000506 GTCGACTCCCAACTTAGTGCA 59.999 52.381 8.70 0.00 0.00 4.57
55 56 1.402456 CGGTCGACTCCCAACTTAGTG 60.402 57.143 16.46 0.00 0.00 2.74
56 57 0.886563 CGGTCGACTCCCAACTTAGT 59.113 55.000 16.46 0.00 0.00 2.24
59 60 0.246635 CATCGGTCGACTCCCAACTT 59.753 55.000 16.46 0.00 0.00 2.66
60 61 0.898789 ACATCGGTCGACTCCCAACT 60.899 55.000 16.46 0.00 0.00 3.16
61 62 0.037605 AACATCGGTCGACTCCCAAC 60.038 55.000 16.46 0.00 0.00 3.77
62 63 1.548081 TAACATCGGTCGACTCCCAA 58.452 50.000 16.46 0.00 0.00 4.12
63 64 1.679680 GATAACATCGGTCGACTCCCA 59.320 52.381 16.46 0.00 0.00 4.37
64 65 1.955080 AGATAACATCGGTCGACTCCC 59.045 52.381 16.46 0.00 0.00 4.30
65 66 3.550436 GGAAGATAACATCGGTCGACTCC 60.550 52.174 16.46 5.92 0.00 3.85
66 67 3.550436 GGGAAGATAACATCGGTCGACTC 60.550 52.174 16.46 4.72 0.00 3.36
67 68 2.361438 GGGAAGATAACATCGGTCGACT 59.639 50.000 16.46 0.00 0.00 4.18
68 69 2.545322 GGGGAAGATAACATCGGTCGAC 60.545 54.545 7.13 7.13 0.00 4.20
71 72 2.545537 GGGGGAAGATAACATCGGTC 57.454 55.000 0.00 0.00 0.00 4.79
87 88 0.750249 GTTCACAAAACCAGTGGGGG 59.250 55.000 15.21 2.04 42.91 5.40
88 89 0.750249 GGTTCACAAAACCAGTGGGG 59.250 55.000 15.21 2.42 40.03 4.96
90 91 2.495669 ACAAGGTTCACAAAACCAGTGG 59.504 45.455 7.91 7.91 42.69 4.00
92 93 4.850680 TCTACAAGGTTCACAAAACCAGT 58.149 39.130 9.45 9.27 42.69 4.00
94 95 4.642885 CCTTCTACAAGGTTCACAAAACCA 59.357 41.667 9.45 0.00 44.11 3.67
95 96 5.183014 CCTTCTACAAGGTTCACAAAACC 57.817 43.478 0.00 0.00 44.11 3.27
129 130 4.080072 ACCAAAGAAAATCCAGCCCAAAAA 60.080 37.500 0.00 0.00 0.00 1.94
130 131 3.457749 ACCAAAGAAAATCCAGCCCAAAA 59.542 39.130 0.00 0.00 0.00 2.44
131 132 3.044894 ACCAAAGAAAATCCAGCCCAAA 58.955 40.909 0.00 0.00 0.00 3.28
132 133 2.632512 GACCAAAGAAAATCCAGCCCAA 59.367 45.455 0.00 0.00 0.00 4.12
133 134 2.247358 GACCAAAGAAAATCCAGCCCA 58.753 47.619 0.00 0.00 0.00 5.36
135 136 3.259123 ACATGACCAAAGAAAATCCAGCC 59.741 43.478 0.00 0.00 0.00 4.85
137 138 6.985645 TGAAAACATGACCAAAGAAAATCCAG 59.014 34.615 0.00 0.00 0.00 3.86
138 139 6.882656 TGAAAACATGACCAAAGAAAATCCA 58.117 32.000 0.00 0.00 0.00 3.41
139 140 7.148755 CGATGAAAACATGACCAAAGAAAATCC 60.149 37.037 0.00 0.00 0.00 3.01
141 142 7.382218 GTCGATGAAAACATGACCAAAGAAAAT 59.618 33.333 0.00 0.00 0.00 1.82
142 143 6.695278 GTCGATGAAAACATGACCAAAGAAAA 59.305 34.615 0.00 0.00 0.00 2.29
143 144 6.039270 AGTCGATGAAAACATGACCAAAGAAA 59.961 34.615 0.00 0.00 0.00 2.52
145 146 5.063204 AGTCGATGAAAACATGACCAAAGA 58.937 37.500 0.00 0.00 0.00 2.52
146 147 5.362556 AGTCGATGAAAACATGACCAAAG 57.637 39.130 0.00 0.00 0.00 2.77
147 148 5.766150 AAGTCGATGAAAACATGACCAAA 57.234 34.783 0.00 0.00 0.00 3.28
148 149 5.766150 AAAGTCGATGAAAACATGACCAA 57.234 34.783 0.00 0.00 0.00 3.67
149 150 5.766150 AAAAGTCGATGAAAACATGACCA 57.234 34.783 0.00 0.00 0.00 4.02
179 180 8.784043 ACTCTGTATTTTTAAAAAGCTCGACAT 58.216 29.630 17.72 2.58 0.00 3.06
230 231 2.742053 GCCTTGCGAGATTGTAAGAACA 59.258 45.455 1.22 0.00 33.96 3.18
231 232 2.096013 GGCCTTGCGAGATTGTAAGAAC 59.904 50.000 1.22 0.00 33.96 3.01
232 233 2.290008 TGGCCTTGCGAGATTGTAAGAA 60.290 45.455 3.32 0.00 33.96 2.52
234 235 1.398390 GTGGCCTTGCGAGATTGTAAG 59.602 52.381 3.32 0.00 0.00 2.34
235 236 1.448985 GTGGCCTTGCGAGATTGTAA 58.551 50.000 3.32 0.00 0.00 2.41
236 237 0.739462 CGTGGCCTTGCGAGATTGTA 60.739 55.000 3.32 0.00 0.00 2.41
238 239 2.787249 CGTGGCCTTGCGAGATTG 59.213 61.111 3.32 0.00 0.00 2.67
239 240 3.127533 GCGTGGCCTTGCGAGATT 61.128 61.111 16.65 0.00 0.00 2.40
240 241 4.087892 AGCGTGGCCTTGCGAGAT 62.088 61.111 16.65 0.00 35.87 2.75
241 242 4.742201 GAGCGTGGCCTTGCGAGA 62.742 66.667 16.65 0.00 35.87 4.04
243 244 4.617520 TTGAGCGTGGCCTTGCGA 62.618 61.111 16.65 5.11 35.87 5.10
244 245 4.093952 CTTGAGCGTGGCCTTGCG 62.094 66.667 3.32 7.47 35.87 4.85
245 246 3.741476 CCTTGAGCGTGGCCTTGC 61.741 66.667 3.32 8.16 0.00 4.01
246 247 3.741476 GCCTTGAGCGTGGCCTTG 61.741 66.667 3.32 0.00 43.11 3.61
255 256 3.741476 CCAACCTGCGCCTTGAGC 61.741 66.667 4.18 0.00 38.52 4.26
256 257 3.741476 GCCAACCTGCGCCTTGAG 61.741 66.667 4.18 0.00 0.00 3.02
258 259 4.347453 GTGCCAACCTGCGCCTTG 62.347 66.667 4.18 3.59 35.74 3.61
259 260 2.484287 ATAGTGCCAACCTGCGCCTT 62.484 55.000 4.18 0.00 42.69 4.35
260 261 1.622607 TATAGTGCCAACCTGCGCCT 61.623 55.000 4.18 0.00 42.69 5.52
261 262 1.153249 TATAGTGCCAACCTGCGCC 60.153 57.895 4.18 0.00 42.69 6.53
263 264 0.178068 AGGTATAGTGCCAACCTGCG 59.822 55.000 0.00 0.00 42.08 5.18
264 265 2.017049 CAAGGTATAGTGCCAACCTGC 58.983 52.381 0.00 0.00 42.86 4.85
265 266 2.017049 GCAAGGTATAGTGCCAACCTG 58.983 52.381 0.00 0.00 42.86 4.00
266 267 1.633432 TGCAAGGTATAGTGCCAACCT 59.367 47.619 0.00 0.00 45.62 3.50
267 268 2.122783 TGCAAGGTATAGTGCCAACC 57.877 50.000 0.00 0.00 40.14 3.77
269 270 5.534654 GGATTTATGCAAGGTATAGTGCCAA 59.465 40.000 0.00 0.00 40.14 4.52
271 272 5.048713 GTGGATTTATGCAAGGTATAGTGCC 60.049 44.000 0.00 0.00 40.14 5.01
272 273 5.048713 GGTGGATTTATGCAAGGTATAGTGC 60.049 44.000 0.00 0.00 41.29 4.40
273 274 6.017109 GTGGTGGATTTATGCAAGGTATAGTG 60.017 42.308 0.00 0.00 0.00 2.74
274 275 6.062095 GTGGTGGATTTATGCAAGGTATAGT 58.938 40.000 0.00 0.00 0.00 2.12
275 276 6.017109 GTGTGGTGGATTTATGCAAGGTATAG 60.017 42.308 0.00 0.00 0.00 1.31
276 277 5.825679 GTGTGGTGGATTTATGCAAGGTATA 59.174 40.000 0.00 0.00 0.00 1.47
277 278 4.644685 GTGTGGTGGATTTATGCAAGGTAT 59.355 41.667 0.00 0.00 0.00 2.73
278 279 4.013728 GTGTGGTGGATTTATGCAAGGTA 58.986 43.478 0.00 0.00 0.00 3.08
279 280 2.825532 GTGTGGTGGATTTATGCAAGGT 59.174 45.455 0.00 0.00 0.00 3.50
280 281 2.824936 TGTGTGGTGGATTTATGCAAGG 59.175 45.455 0.00 0.00 0.00 3.61
281 282 4.022068 AGTTGTGTGGTGGATTTATGCAAG 60.022 41.667 0.00 0.00 0.00 4.01
282 283 3.894427 AGTTGTGTGGTGGATTTATGCAA 59.106 39.130 0.00 0.00 0.00 4.08
283 284 3.495331 AGTTGTGTGGTGGATTTATGCA 58.505 40.909 0.00 0.00 0.00 3.96
284 285 3.758554 AGAGTTGTGTGGTGGATTTATGC 59.241 43.478 0.00 0.00 0.00 3.14
285 286 5.248640 AGAGAGTTGTGTGGTGGATTTATG 58.751 41.667 0.00 0.00 0.00 1.90
286 287 5.505181 AGAGAGTTGTGTGGTGGATTTAT 57.495 39.130 0.00 0.00 0.00 1.40
287 288 4.974645 AGAGAGTTGTGTGGTGGATTTA 57.025 40.909 0.00 0.00 0.00 1.40
288 289 3.864789 AGAGAGTTGTGTGGTGGATTT 57.135 42.857 0.00 0.00 0.00 2.17
289 290 3.306088 CGTAGAGAGTTGTGTGGTGGATT 60.306 47.826 0.00 0.00 0.00 3.01
291 292 1.611977 CGTAGAGAGTTGTGTGGTGGA 59.388 52.381 0.00 0.00 0.00 4.02
293 294 2.607282 GGACGTAGAGAGTTGTGTGGTG 60.607 54.545 0.00 0.00 0.00 4.17
294 295 1.612463 GGACGTAGAGAGTTGTGTGGT 59.388 52.381 0.00 0.00 0.00 4.16
296 297 3.364889 TTGGACGTAGAGAGTTGTGTG 57.635 47.619 0.00 0.00 0.00 3.82
298 299 4.750098 ACAATTTGGACGTAGAGAGTTGTG 59.250 41.667 0.78 0.00 0.00 3.33
299 300 4.750098 CACAATTTGGACGTAGAGAGTTGT 59.250 41.667 0.78 0.00 0.00 3.32
300 301 4.377431 GCACAATTTGGACGTAGAGAGTTG 60.377 45.833 0.78 0.00 0.00 3.16
301 302 3.746492 GCACAATTTGGACGTAGAGAGTT 59.254 43.478 0.78 0.00 0.00 3.01
302 303 3.244078 TGCACAATTTGGACGTAGAGAGT 60.244 43.478 0.78 0.00 0.00 3.24
303 304 3.325870 TGCACAATTTGGACGTAGAGAG 58.674 45.455 0.78 0.00 0.00 3.20
304 305 3.394674 TGCACAATTTGGACGTAGAGA 57.605 42.857 0.78 0.00 0.00 3.10
305 306 3.745975 TCTTGCACAATTTGGACGTAGAG 59.254 43.478 0.78 0.00 0.00 2.43
306 307 3.496884 GTCTTGCACAATTTGGACGTAGA 59.503 43.478 0.78 0.00 0.00 2.59
308 309 3.472652 AGTCTTGCACAATTTGGACGTA 58.527 40.909 0.78 0.00 0.00 3.57
311 312 3.250040 ACGTAGTCTTGCACAATTTGGAC 59.750 43.478 0.78 0.00 29.74 4.02
313 314 3.554524 CACGTAGTCTTGCACAATTTGG 58.445 45.455 0.78 0.00 41.61 3.28
315 316 2.878406 AGCACGTAGTCTTGCACAATTT 59.122 40.909 0.00 0.00 41.61 1.82
316 317 2.494059 AGCACGTAGTCTTGCACAATT 58.506 42.857 0.00 0.00 41.61 2.32
317 318 2.169832 AGCACGTAGTCTTGCACAAT 57.830 45.000 0.00 0.00 41.61 2.71
318 319 2.804697 TAGCACGTAGTCTTGCACAA 57.195 45.000 0.00 0.00 41.61 3.33
319 320 2.798283 GTTTAGCACGTAGTCTTGCACA 59.202 45.455 0.00 0.00 41.61 4.57
320 321 2.157085 GGTTTAGCACGTAGTCTTGCAC 59.843 50.000 0.00 0.00 41.61 4.57
321 322 2.224090 TGGTTTAGCACGTAGTCTTGCA 60.224 45.455 0.00 0.00 41.61 4.08
325 326 5.046807 AGGTTAATGGTTTAGCACGTAGTCT 60.047 40.000 0.00 0.00 41.61 3.24
328 329 6.370718 AGAAAGGTTAATGGTTTAGCACGTAG 59.629 38.462 0.00 0.00 0.00 3.51
330 331 5.067954 AGAAAGGTTAATGGTTTAGCACGT 58.932 37.500 0.00 0.00 0.00 4.49
332 333 7.215719 AGAAGAAAGGTTAATGGTTTAGCAC 57.784 36.000 0.00 0.00 0.00 4.40
334 335 8.563123 AGTAGAAGAAAGGTTAATGGTTTAGC 57.437 34.615 0.00 0.00 0.00 3.09
337 338 8.141909 GCAAAGTAGAAGAAAGGTTAATGGTTT 58.858 33.333 0.00 0.00 0.00 3.27
338 339 7.286775 TGCAAAGTAGAAGAAAGGTTAATGGTT 59.713 33.333 0.00 0.00 0.00 3.67
340 341 7.214467 TGCAAAGTAGAAGAAAGGTTAATGG 57.786 36.000 0.00 0.00 0.00 3.16
341 342 8.968242 GTTTGCAAAGTAGAAGAAAGGTTAATG 58.032 33.333 13.26 0.00 0.00 1.90
343 344 8.288689 AGTTTGCAAAGTAGAAGAAAGGTTAA 57.711 30.769 17.91 0.00 0.00 2.01
344 345 7.875327 AGTTTGCAAAGTAGAAGAAAGGTTA 57.125 32.000 17.91 0.00 0.00 2.85
345 346 6.775594 AGTTTGCAAAGTAGAAGAAAGGTT 57.224 33.333 17.91 0.00 0.00 3.50
346 347 6.377146 TGAAGTTTGCAAAGTAGAAGAAAGGT 59.623 34.615 19.55 0.17 0.00 3.50
347 348 6.795399 TGAAGTTTGCAAAGTAGAAGAAAGG 58.205 36.000 19.55 0.00 0.00 3.11
348 349 7.970614 AGTTGAAGTTTGCAAAGTAGAAGAAAG 59.029 33.333 19.55 0.00 0.00 2.62
349 350 7.754924 CAGTTGAAGTTTGCAAAGTAGAAGAAA 59.245 33.333 19.55 6.03 0.00 2.52
350 351 7.250569 CAGTTGAAGTTTGCAAAGTAGAAGAA 58.749 34.615 19.55 6.08 0.00 2.52
351 352 6.677920 GCAGTTGAAGTTTGCAAAGTAGAAGA 60.678 38.462 19.55 2.74 37.75 2.87
353 354 5.125417 AGCAGTTGAAGTTTGCAAAGTAGAA 59.875 36.000 19.55 12.17 40.22 2.10
354 355 4.640201 AGCAGTTGAAGTTTGCAAAGTAGA 59.360 37.500 19.55 6.85 40.22 2.59
356 357 4.439974 CCAGCAGTTGAAGTTTGCAAAGTA 60.440 41.667 19.55 2.62 40.22 2.24
357 358 3.514645 CAGCAGTTGAAGTTTGCAAAGT 58.485 40.909 13.26 13.59 40.22 2.66
360 361 2.098614 TCCAGCAGTTGAAGTTTGCAA 58.901 42.857 0.00 0.00 40.22 4.08
361 362 1.761449 TCCAGCAGTTGAAGTTTGCA 58.239 45.000 0.44 0.00 40.22 4.08
363 364 4.038402 AGGAAATCCAGCAGTTGAAGTTTG 59.962 41.667 1.67 0.00 38.89 2.93
364 365 4.218312 AGGAAATCCAGCAGTTGAAGTTT 58.782 39.130 1.67 0.00 38.89 2.66
365 366 3.837355 AGGAAATCCAGCAGTTGAAGTT 58.163 40.909 1.67 0.00 38.89 2.66
367 368 3.571401 ACAAGGAAATCCAGCAGTTGAAG 59.429 43.478 1.67 0.00 38.89 3.02
369 370 3.149196 GACAAGGAAATCCAGCAGTTGA 58.851 45.455 1.67 0.00 38.89 3.18
372 373 1.611673 CGGACAAGGAAATCCAGCAGT 60.612 52.381 1.67 0.00 38.89 4.40
374 375 0.690192 TCGGACAAGGAAATCCAGCA 59.310 50.000 1.67 0.00 38.89 4.41
377 378 3.517901 ACACTATCGGACAAGGAAATCCA 59.482 43.478 1.67 0.00 38.89 3.41
379 380 4.755411 TCACACTATCGGACAAGGAAATC 58.245 43.478 0.00 0.00 0.00 2.17
380 381 4.819105 TCACACTATCGGACAAGGAAAT 57.181 40.909 0.00 0.00 0.00 2.17
381 382 4.610605 TTCACACTATCGGACAAGGAAA 57.389 40.909 0.00 0.00 0.00 3.13
382 383 4.610605 TTTCACACTATCGGACAAGGAA 57.389 40.909 0.00 0.00 0.00 3.36
383 384 4.819105 ATTTCACACTATCGGACAAGGA 57.181 40.909 0.00 0.00 0.00 3.36
384 385 5.163754 GGAAATTTCACACTATCGGACAAGG 60.164 44.000 19.49 0.00 0.00 3.61
386 387 5.309638 TGGAAATTTCACACTATCGGACAA 58.690 37.500 19.49 0.00 0.00 3.18
387 388 4.900684 TGGAAATTTCACACTATCGGACA 58.099 39.130 19.49 1.40 0.00 4.02
389 390 5.556915 AGTTGGAAATTTCACACTATCGGA 58.443 37.500 19.49 0.00 0.00 4.55
390 391 5.880054 AGTTGGAAATTTCACACTATCGG 57.120 39.130 19.49 0.00 0.00 4.18
394 395 9.495572 AAAAACAAAGTTGGAAATTTCACACTA 57.504 25.926 19.49 0.00 0.00 2.74
486 487 8.552083 AAAAATCATGAGGCTTAAAATGGAAC 57.448 30.769 0.09 0.00 0.00 3.62
604 3794 4.039730 TGCCAAGGATTTGAAAATCGGAAA 59.960 37.500 9.13 0.00 44.43 3.13
714 3911 2.880268 GCATGCATGGCTACACTTATGA 59.120 45.455 27.34 0.00 0.00 2.15
779 4550 3.063180 GCTAGTTACTGAACTGCATGCAG 59.937 47.826 39.47 39.47 45.74 4.41
780 4551 3.002791 GCTAGTTACTGAACTGCATGCA 58.997 45.455 21.29 21.29 45.74 3.96
781 4552 2.352960 GGCTAGTTACTGAACTGCATGC 59.647 50.000 11.82 11.82 45.74 4.06
782 4553 2.604914 CGGCTAGTTACTGAACTGCATG 59.395 50.000 0.00 0.00 45.74 4.06
783 4554 2.418746 CCGGCTAGTTACTGAACTGCAT 60.419 50.000 0.00 0.00 45.74 3.96
1321 8907 0.457851 GTCTCTCATGGACGGAGGTG 59.542 60.000 0.00 0.00 33.18 4.00
1371 8972 2.400798 CGTGCATGGACGCATCAC 59.599 61.111 26.70 7.04 45.26 3.06
1396 8997 5.664294 ACATTTTATTGCAGCATCAGGAA 57.336 34.783 0.00 0.00 0.00 3.36
1398 8999 4.569162 CCAACATTTTATTGCAGCATCAGG 59.431 41.667 0.00 0.00 0.00 3.86
1399 9000 4.569162 CCCAACATTTTATTGCAGCATCAG 59.431 41.667 0.00 0.00 0.00 2.90
1427 9036 8.894409 TTAAAGTCATTTTATTCAGCACATCG 57.106 30.769 0.00 0.00 31.57 3.84
1443 9054 8.164057 AGGAGAAGGTAGGAAATTAAAGTCAT 57.836 34.615 0.00 0.00 0.00 3.06
1449 9060 7.569599 AACAGAGGAGAAGGTAGGAAATTAA 57.430 36.000 0.00 0.00 0.00 1.40
1450 9061 7.394816 CAAACAGAGGAGAAGGTAGGAAATTA 58.605 38.462 0.00 0.00 0.00 1.40
1451 9062 6.241645 CAAACAGAGGAGAAGGTAGGAAATT 58.758 40.000 0.00 0.00 0.00 1.82
1452 9063 5.804771 GCAAACAGAGGAGAAGGTAGGAAAT 60.805 44.000 0.00 0.00 0.00 2.17
1469 9080 1.396301 GAAGATGGAGCGAGCAAACAG 59.604 52.381 0.00 0.00 0.00 3.16
1470 9081 1.270785 TGAAGATGGAGCGAGCAAACA 60.271 47.619 0.00 0.00 0.00 2.83
1475 9086 1.005340 CAAGTGAAGATGGAGCGAGC 58.995 55.000 0.00 0.00 0.00 5.03
1479 9090 5.048434 AGTTTAAAGCAAGTGAAGATGGAGC 60.048 40.000 0.00 0.00 0.00 4.70
1485 9096 9.361315 GGTTAAAAAGTTTAAAGCAAGTGAAGA 57.639 29.630 7.55 0.00 0.00 2.87
1486 9097 9.145865 TGGTTAAAAAGTTTAAAGCAAGTGAAG 57.854 29.630 11.14 0.00 0.00 3.02
1487 9098 9.490379 TTGGTTAAAAAGTTTAAAGCAAGTGAA 57.510 25.926 17.55 3.59 0.00 3.18
1501 9112 9.857957 TCTTTTACGTGATTTTGGTTAAAAAGT 57.142 25.926 0.00 0.00 41.00 2.66
1507 9118 8.083462 GGGAATTCTTTTACGTGATTTTGGTTA 58.917 33.333 5.23 0.00 0.00 2.85
1511 9122 6.523201 CGAGGGAATTCTTTTACGTGATTTTG 59.477 38.462 5.23 0.00 0.00 2.44
1516 9127 4.524316 TCGAGGGAATTCTTTTACGTGA 57.476 40.909 5.23 0.00 0.00 4.35
1530 9141 4.837093 ACAATTAGTTTGGATCGAGGGA 57.163 40.909 0.00 0.00 39.80 4.20
1531 9142 4.438744 GCAACAATTAGTTTGGATCGAGGG 60.439 45.833 0.00 0.00 38.74 4.30
1532 9143 4.155826 TGCAACAATTAGTTTGGATCGAGG 59.844 41.667 0.00 0.00 38.74 4.63
1533 9144 5.295431 TGCAACAATTAGTTTGGATCGAG 57.705 39.130 0.00 0.00 38.74 4.04
1534 9145 4.379394 GCTGCAACAATTAGTTTGGATCGA 60.379 41.667 0.00 0.00 38.74 3.59
1535 9146 3.853671 GCTGCAACAATTAGTTTGGATCG 59.146 43.478 0.00 0.00 38.74 3.69
1536 9147 5.064441 AGCTGCAACAATTAGTTTGGATC 57.936 39.130 1.02 0.00 38.74 3.36
1537 9148 4.768968 AGAGCTGCAACAATTAGTTTGGAT 59.231 37.500 1.02 0.00 38.74 3.41
1538 9149 4.144297 AGAGCTGCAACAATTAGTTTGGA 58.856 39.130 1.02 0.00 38.74 3.53
1539 9150 4.510038 AGAGCTGCAACAATTAGTTTGG 57.490 40.909 1.02 0.00 38.74 3.28
1540 9151 6.246420 ACTAGAGCTGCAACAATTAGTTTG 57.754 37.500 1.02 0.00 38.74 2.93
1541 9152 6.934645 TGTACTAGAGCTGCAACAATTAGTTT 59.065 34.615 1.02 0.00 38.74 2.66
1542 9153 6.464222 TGTACTAGAGCTGCAACAATTAGTT 58.536 36.000 1.02 0.00 42.42 2.24
1543 9154 6.037786 TGTACTAGAGCTGCAACAATTAGT 57.962 37.500 1.02 3.19 0.00 2.24
1544 9155 6.591834 AGTTGTACTAGAGCTGCAACAATTAG 59.408 38.462 12.91 0.00 41.07 1.73
1545 9156 6.464222 AGTTGTACTAGAGCTGCAACAATTA 58.536 36.000 12.91 0.00 41.07 1.40
1546 9157 5.308825 AGTTGTACTAGAGCTGCAACAATT 58.691 37.500 12.91 0.00 41.07 2.32
1547 9158 4.899502 AGTTGTACTAGAGCTGCAACAAT 58.100 39.130 12.91 0.00 41.07 2.71
1548 9159 4.336889 AGTTGTACTAGAGCTGCAACAA 57.663 40.909 12.91 0.00 41.07 2.83
1549 9160 4.336889 AAGTTGTACTAGAGCTGCAACA 57.663 40.909 12.91 0.00 41.07 3.33
1550 9161 5.927115 ACTAAAGTTGTACTAGAGCTGCAAC 59.073 40.000 1.02 0.45 39.52 4.17
1551 9162 6.097915 ACTAAAGTTGTACTAGAGCTGCAA 57.902 37.500 1.02 0.00 0.00 4.08
1552 9163 5.723672 ACTAAAGTTGTACTAGAGCTGCA 57.276 39.130 1.02 0.00 0.00 4.41
1566 9177 4.286291 ACTCCCTCCGATTCAACTAAAGTT 59.714 41.667 0.00 0.00 39.12 2.66
1567 9178 3.838903 ACTCCCTCCGATTCAACTAAAGT 59.161 43.478 0.00 0.00 0.00 2.66
1568 9179 4.473477 ACTCCCTCCGATTCAACTAAAG 57.527 45.455 0.00 0.00 0.00 1.85
1569 9180 4.161001 GGTACTCCCTCCGATTCAACTAAA 59.839 45.833 0.00 0.00 0.00 1.85
1570 9181 3.703052 GGTACTCCCTCCGATTCAACTAA 59.297 47.826 0.00 0.00 0.00 2.24
1571 9182 3.294214 GGTACTCCCTCCGATTCAACTA 58.706 50.000 0.00 0.00 0.00 2.24
1572 9183 2.108970 GGTACTCCCTCCGATTCAACT 58.891 52.381 0.00 0.00 0.00 3.16
1573 9184 2.598686 GGTACTCCCTCCGATTCAAC 57.401 55.000 0.00 0.00 0.00 3.18
1585 9196 7.065443 GTGTACTGATTTATTTGTGGGTACTCC 59.935 40.741 0.00 0.00 32.33 3.85
1586 9197 7.604927 TGTGTACTGATTTATTTGTGGGTACTC 59.395 37.037 0.00 0.00 32.33 2.59
1587 9198 7.455058 TGTGTACTGATTTATTTGTGGGTACT 58.545 34.615 0.00 0.00 32.33 2.73
1588 9199 7.675962 TGTGTACTGATTTATTTGTGGGTAC 57.324 36.000 0.00 0.00 0.00 3.34
1589 9200 8.735315 CAATGTGTACTGATTTATTTGTGGGTA 58.265 33.333 0.00 0.00 0.00 3.69
1590 9201 7.601856 CAATGTGTACTGATTTATTTGTGGGT 58.398 34.615 0.00 0.00 0.00 4.51
1591 9202 6.531240 GCAATGTGTACTGATTTATTTGTGGG 59.469 38.462 0.00 0.00 0.00 4.61
1592 9203 7.089538 TGCAATGTGTACTGATTTATTTGTGG 58.910 34.615 0.00 0.00 0.00 4.17
1593 9204 7.201376 GCTGCAATGTGTACTGATTTATTTGTG 60.201 37.037 0.00 0.00 0.00 3.33
1594 9205 6.808212 GCTGCAATGTGTACTGATTTATTTGT 59.192 34.615 0.00 0.00 0.00 2.83
1595 9206 6.807720 TGCTGCAATGTGTACTGATTTATTTG 59.192 34.615 0.00 0.00 0.00 2.32
1596 9207 6.923012 TGCTGCAATGTGTACTGATTTATTT 58.077 32.000 0.00 0.00 0.00 1.40
1597 9208 6.375174 TCTGCTGCAATGTGTACTGATTTATT 59.625 34.615 3.02 0.00 0.00 1.40
1598 9209 5.882000 TCTGCTGCAATGTGTACTGATTTAT 59.118 36.000 3.02 0.00 0.00 1.40
1599 9210 5.244755 TCTGCTGCAATGTGTACTGATTTA 58.755 37.500 3.02 0.00 0.00 1.40
1600 9211 4.074259 TCTGCTGCAATGTGTACTGATTT 58.926 39.130 3.02 0.00 0.00 2.17
1601 9212 3.678289 TCTGCTGCAATGTGTACTGATT 58.322 40.909 3.02 0.00 0.00 2.57
1602 9213 3.339253 TCTGCTGCAATGTGTACTGAT 57.661 42.857 3.02 0.00 0.00 2.90
1603 9214 2.837532 TCTGCTGCAATGTGTACTGA 57.162 45.000 3.02 0.00 0.00 3.41
1604 9215 3.902261 TTTCTGCTGCAATGTGTACTG 57.098 42.857 3.02 0.00 0.00 2.74
1605 9216 3.631686 TGTTTTCTGCTGCAATGTGTACT 59.368 39.130 3.02 0.00 0.00 2.73
1606 9217 3.963665 TGTTTTCTGCTGCAATGTGTAC 58.036 40.909 3.02 0.00 0.00 2.90
1607 9218 4.277921 TCATGTTTTCTGCTGCAATGTGTA 59.722 37.500 3.02 0.00 0.00 2.90
1608 9219 3.068448 TCATGTTTTCTGCTGCAATGTGT 59.932 39.130 3.02 0.00 0.00 3.72
1609 9220 3.427528 GTCATGTTTTCTGCTGCAATGTG 59.572 43.478 3.02 0.00 0.00 3.21
1610 9221 3.068448 TGTCATGTTTTCTGCTGCAATGT 59.932 39.130 3.02 0.00 0.00 2.71
1611 9222 3.644823 TGTCATGTTTTCTGCTGCAATG 58.355 40.909 3.02 3.54 0.00 2.82
1612 9223 4.530710 ATGTCATGTTTTCTGCTGCAAT 57.469 36.364 3.02 0.00 0.00 3.56
1613 9224 4.520111 AGTATGTCATGTTTTCTGCTGCAA 59.480 37.500 3.02 0.00 0.00 4.08
1614 9225 4.074259 AGTATGTCATGTTTTCTGCTGCA 58.926 39.130 0.88 0.88 0.00 4.41
1615 9226 4.394300 AGAGTATGTCATGTTTTCTGCTGC 59.606 41.667 0.00 0.00 0.00 5.25
1616 9227 6.591448 TGTAGAGTATGTCATGTTTTCTGCTG 59.409 38.462 0.00 0.00 0.00 4.41
1617 9228 6.701340 TGTAGAGTATGTCATGTTTTCTGCT 58.299 36.000 0.00 0.00 0.00 4.24
1618 9229 6.968131 TGTAGAGTATGTCATGTTTTCTGC 57.032 37.500 0.00 0.00 0.00 4.26
1619 9230 7.332926 AGCTTGTAGAGTATGTCATGTTTTCTG 59.667 37.037 0.00 0.00 0.00 3.02
1620 9231 7.390027 AGCTTGTAGAGTATGTCATGTTTTCT 58.610 34.615 0.00 0.00 0.00 2.52
1643 9254 5.924475 TTGAAAGCAACAGACTTACTAGC 57.076 39.130 0.00 0.00 0.00 3.42
1707 9318 6.461110 TGGTAGGCTAACAGTAGTGATAAC 57.539 41.667 8.51 0.00 0.00 1.89
1792 9407 1.836383 GATGGAGTACTTGCGTACCG 58.164 55.000 0.00 0.00 45.68 4.02
1838 9453 1.135402 GCAGGATTTTTGCCGTCGATT 60.135 47.619 0.00 0.00 35.54 3.34
1843 9458 2.611225 TTTTGCAGGATTTTTGCCGT 57.389 40.000 0.00 0.00 40.81 5.68
1884 9541 1.928868 ATCAAAGTGGGAGGCCTTTG 58.071 50.000 6.77 6.47 45.63 2.77
1942 9599 1.003233 GTGGTTTAGGTCTGGAGGTGG 59.997 57.143 0.00 0.00 0.00 4.61
1975 9632 7.700656 CGTATTTTTGAAGTCTGGAGTTTTTGT 59.299 33.333 0.00 0.00 0.00 2.83
1976 9633 7.305993 GCGTATTTTTGAAGTCTGGAGTTTTTG 60.306 37.037 0.00 0.00 0.00 2.44
2005 9662 4.022676 AGTTTCAACACAAGGTTTTCGTGT 60.023 37.500 0.00 0.00 45.48 4.49
2012 9669 6.152661 TCTGATGAAAGTTTCAACACAAGGTT 59.847 34.615 21.57 2.44 43.95 3.50
2022 9679 6.183360 GCTCAATCGATCTGATGAAAGTTTCA 60.183 38.462 20.14 20.14 45.01 2.69
2083 9740 3.474600 CACCATATCAAGAAGAGGCTGG 58.525 50.000 0.00 0.00 0.00 4.85
2090 9747 5.763698 ACATGATCTGCACCATATCAAGAAG 59.236 40.000 0.00 0.00 32.33 2.85
2094 9751 4.037089 GCAACATGATCTGCACCATATCAA 59.963 41.667 0.00 0.00 38.48 2.57
2135 9792 1.404181 CCAGCGCGGTAGCACATATAT 60.404 52.381 11.92 0.00 45.49 0.86
2136 9793 0.038618 CCAGCGCGGTAGCACATATA 60.039 55.000 11.92 0.00 45.49 0.86
2137 9794 1.300931 CCAGCGCGGTAGCACATAT 60.301 57.895 11.92 0.00 45.49 1.78
2138 9795 2.106131 CCAGCGCGGTAGCACATA 59.894 61.111 11.92 0.00 45.49 2.29
2183 9840 2.556114 CCTAATCCTCATGCCCCAATCC 60.556 54.545 0.00 0.00 0.00 3.01
2194 9851 2.040144 GCCTGGTAGCCCTAATCCTCA 61.040 57.143 0.00 0.00 0.00 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.