Multiple sequence alignment - TraesCS5B01G529600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G529600 chr5B 100.000 2399 0 0 1 2399 688067215 688064817 0.000000e+00 4431.0
1 TraesCS5B01G529600 chr5B 97.479 595 12 1 1 592 29693708 29694302 0.000000e+00 1013.0
2 TraesCS5B01G529600 chr5B 91.870 369 16 5 2042 2398 688011134 688010768 9.900000e-139 503.0
3 TraesCS5B01G529600 chr5B 91.328 369 19 6 2042 2397 688080619 688080251 2.140000e-135 492.0
4 TraesCS5B01G529600 chr5B 92.000 325 20 4 1703 2027 688011437 688011119 3.640000e-123 451.0
5 TraesCS5B01G529600 chr5B 91.875 320 21 3 1703 2022 688125631 688125317 2.190000e-120 442.0
6 TraesCS5B01G529600 chr5B 89.846 325 26 5 1703 2027 688080921 688080604 6.170000e-111 411.0
7 TraesCS5B01G529600 chr5B 83.967 368 24 10 2042 2397 688125327 688124983 1.070000e-83 320.0
8 TraesCS5B01G529600 chr5B 82.012 328 38 13 2073 2386 688166928 688166608 2.370000e-65 259.0
9 TraesCS5B01G529600 chr5B 97.973 148 3 0 590 737 54375244 54375391 8.510000e-65 257.0
10 TraesCS5B01G529600 chr5B 90.000 70 6 1 1820 1889 688129175 688129107 3.280000e-14 89.8
11 TraesCS5B01G529600 chr5B 94.340 53 3 0 1653 1705 688011551 688011499 5.500000e-12 82.4
12 TraesCS5B01G529600 chr5B 95.918 49 2 0 1653 1701 688125743 688125695 1.980000e-11 80.5
13 TraesCS5B01G529600 chr5B 89.286 56 6 0 1922 1977 534113033 534113088 1.190000e-08 71.3
14 TraesCS5B01G529600 chr7B 97.320 597 14 1 1 595 641644714 641644118 0.000000e+00 1013.0
15 TraesCS5B01G529600 chr7B 90.687 655 61 0 737 1391 379407033 379407687 0.000000e+00 872.0
16 TraesCS5B01G529600 chr7B 98.639 147 2 0 593 739 14310116 14309970 6.580000e-66 261.0
17 TraesCS5B01G529600 chr7B 98.639 147 2 0 593 739 14326066 14325920 6.580000e-66 261.0
18 TraesCS5B01G529600 chr7B 93.878 49 3 0 1922 1970 537354466 537354418 9.200000e-10 75.0
19 TraesCS5B01G529600 chr7B 93.182 44 3 0 1922 1965 193955892 193955935 5.540000e-07 65.8
20 TraesCS5B01G529600 chr1B 97.311 595 13 1 1 592 681415753 681416347 0.000000e+00 1007.0
21 TraesCS5B01G529600 chr1B 98.639 147 2 0 593 739 392636241 392636095 6.580000e-66 261.0
22 TraesCS5B01G529600 chr1B 98.000 150 3 0 590 739 637021048 637021197 6.580000e-66 261.0
23 TraesCS5B01G529600 chr1B 95.455 44 2 0 1922 1965 396594810 396594767 1.190000e-08 71.3
24 TraesCS5B01G529600 chr1B 90.909 44 4 0 1922 1965 656610761 656610804 2.580000e-05 60.2
25 TraesCS5B01G529600 chr6B 97.143 595 14 1 1 592 48888765 48889359 0.000000e+00 1002.0
26 TraesCS5B01G529600 chr6B 96.990 598 15 1 1 595 87193449 87192852 0.000000e+00 1002.0
27 TraesCS5B01G529600 chr6B 97.143 595 14 1 1 592 541301043 541301637 0.000000e+00 1002.0
28 TraesCS5B01G529600 chr6B 99.310 145 1 0 593 737 149894532 149894388 1.830000e-66 263.0
29 TraesCS5B01G529600 chr6B 95.238 42 2 0 1924 1965 718323945 718323904 1.540000e-07 67.6
30 TraesCS5B01G529600 chr4B 96.985 597 16 1 1 595 259441087 259440491 0.000000e+00 1002.0
31 TraesCS5B01G529600 chr4B 98.039 153 3 0 593 745 662659039 662658887 1.410000e-67 267.0
32 TraesCS5B01G529600 chr4B 92.857 42 3 0 1924 1965 604047697 604047738 7.160000e-06 62.1
33 TraesCS5B01G529600 chr4B 89.362 47 5 0 1924 1970 666050407 666050453 2.580000e-05 60.2
34 TraesCS5B01G529600 chr2B 96.985 597 16 2 1 595 184932991 184932395 0.000000e+00 1002.0
35 TraesCS5B01G529600 chr2B 97.143 595 14 1 1 592 627962307 627962901 0.000000e+00 1002.0
36 TraesCS5B01G529600 chr2B 98.000 150 3 0 590 739 313473369 313473518 6.580000e-66 261.0
37 TraesCS5B01G529600 chr2B 98.000 150 3 0 590 739 700116827 700116976 6.580000e-66 261.0
38 TraesCS5B01G529600 chr2D 91.641 658 55 0 737 1394 432085057 432084400 0.000000e+00 911.0
39 TraesCS5B01G529600 chr1A 91.185 658 57 1 737 1394 112044856 112044200 0.000000e+00 893.0
40 TraesCS5B01G529600 chr1A 87.131 373 26 9 2042 2395 570112843 570113212 1.030000e-108 403.0
41 TraesCS5B01G529600 chr1A 89.247 93 9 1 2064 2156 570120945 570121036 5.420000e-22 115.0
42 TraesCS5B01G529600 chr1A 93.617 47 3 0 1924 1970 340015055 340015009 1.190000e-08 71.3
43 TraesCS5B01G529600 chr5D 90.881 658 60 0 737 1394 239968189 239967532 0.000000e+00 883.0
44 TraesCS5B01G529600 chr5D 93.443 61 3 1 1816 1876 545227584 545227525 3.280000e-14 89.8
45 TraesCS5B01G529600 chr4D 90.992 655 59 0 737 1391 390856508 390857162 0.000000e+00 883.0
46 TraesCS5B01G529600 chr4D 90.592 659 62 0 737 1395 338022736 338023394 0.000000e+00 874.0
47 TraesCS5B01G529600 chr4D 91.837 49 4 0 1922 1970 503153886 503153934 4.280000e-08 69.4
48 TraesCS5B01G529600 chr1D 90.992 655 59 0 737 1391 343260911 343261565 0.000000e+00 883.0
49 TraesCS5B01G529600 chr1D 93.878 49 3 0 1922 1970 295184649 295184601 9.200000e-10 75.0
50 TraesCS5B01G529600 chr1D 97.368 38 1 0 1928 1965 488513651 488513688 5.540000e-07 65.8
51 TraesCS5B01G529600 chr4A 90.881 658 56 2 737 1391 6629576 6630232 0.000000e+00 880.0
52 TraesCS5B01G529600 chr4A 91.071 56 5 0 1922 1977 577472527 577472472 2.560000e-10 76.8
53 TraesCS5B01G529600 chrUn 90.992 655 53 3 737 1391 99109828 99110476 0.000000e+00 878.0
54 TraesCS5B01G529600 chrUn 87.131 373 26 8 2042 2395 48401845 48402214 1.030000e-108 403.0
55 TraesCS5B01G529600 chr6D 80.974 657 77 25 737 1391 469294080 469294690 6.000000e-131 477.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G529600 chr5B 688064817 688067215 2398 True 4431.000000 4431 100.000000 1 2399 1 chr5B.!!$R1 2398
1 TraesCS5B01G529600 chr5B 29693708 29694302 594 False 1013.000000 1013 97.479000 1 592 1 chr5B.!!$F1 591
2 TraesCS5B01G529600 chr5B 688080251 688080921 670 True 451.500000 492 90.587000 1703 2397 2 chr5B.!!$R4 694
3 TraesCS5B01G529600 chr5B 688010768 688011551 783 True 345.466667 503 92.736667 1653 2398 3 chr5B.!!$R3 745
4 TraesCS5B01G529600 chr5B 688124983 688129175 4192 True 233.075000 442 90.440000 1653 2397 4 chr5B.!!$R5 744
5 TraesCS5B01G529600 chr7B 641644118 641644714 596 True 1013.000000 1013 97.320000 1 595 1 chr7B.!!$R4 594
6 TraesCS5B01G529600 chr7B 379407033 379407687 654 False 872.000000 872 90.687000 737 1391 1 chr7B.!!$F2 654
7 TraesCS5B01G529600 chr1B 681415753 681416347 594 False 1007.000000 1007 97.311000 1 592 1 chr1B.!!$F3 591
8 TraesCS5B01G529600 chr6B 48888765 48889359 594 False 1002.000000 1002 97.143000 1 592 1 chr6B.!!$F1 591
9 TraesCS5B01G529600 chr6B 87192852 87193449 597 True 1002.000000 1002 96.990000 1 595 1 chr6B.!!$R1 594
10 TraesCS5B01G529600 chr6B 541301043 541301637 594 False 1002.000000 1002 97.143000 1 592 1 chr6B.!!$F2 591
11 TraesCS5B01G529600 chr4B 259440491 259441087 596 True 1002.000000 1002 96.985000 1 595 1 chr4B.!!$R1 594
12 TraesCS5B01G529600 chr2B 184932395 184932991 596 True 1002.000000 1002 96.985000 1 595 1 chr2B.!!$R1 594
13 TraesCS5B01G529600 chr2B 627962307 627962901 594 False 1002.000000 1002 97.143000 1 592 1 chr2B.!!$F2 591
14 TraesCS5B01G529600 chr2D 432084400 432085057 657 True 911.000000 911 91.641000 737 1394 1 chr2D.!!$R1 657
15 TraesCS5B01G529600 chr1A 112044200 112044856 656 True 893.000000 893 91.185000 737 1394 1 chr1A.!!$R1 657
16 TraesCS5B01G529600 chr5D 239967532 239968189 657 True 883.000000 883 90.881000 737 1394 1 chr5D.!!$R1 657
17 TraesCS5B01G529600 chr4D 390856508 390857162 654 False 883.000000 883 90.992000 737 1391 1 chr4D.!!$F2 654
18 TraesCS5B01G529600 chr4D 338022736 338023394 658 False 874.000000 874 90.592000 737 1395 1 chr4D.!!$F1 658
19 TraesCS5B01G529600 chr1D 343260911 343261565 654 False 883.000000 883 90.992000 737 1391 1 chr1D.!!$F1 654
20 TraesCS5B01G529600 chr4A 6629576 6630232 656 False 880.000000 880 90.881000 737 1391 1 chr4A.!!$F1 654
21 TraesCS5B01G529600 chrUn 99109828 99110476 648 False 878.000000 878 90.992000 737 1391 1 chrUn.!!$F2 654
22 TraesCS5B01G529600 chr6D 469294080 469294690 610 False 477.000000 477 80.974000 737 1391 1 chr6D.!!$F1 654

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
680 684 0.386476 CTACTAATGGCGCACCGGTA 59.614 55.0 6.87 4.59 39.7 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1497 1505 0.107456 ATTGGCGAGCATCTTCCGAT 59.893 50.0 0.0 0.0 0.0 4.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 0.867746 CAAGCACTTGAACAGCGCTA 59.132 50.000 10.99 0.00 40.21 4.26
374 378 1.405121 CCAGGGCAGTTCGTAAGTACC 60.405 57.143 0.00 0.00 38.54 3.34
527 531 5.135383 CAGATAATCTCAAAGATTGGGCCA 58.865 41.667 0.00 0.00 44.14 5.36
583 587 4.946157 AGACAAGAATTCTTTCGCATCCAT 59.054 37.500 18.16 0.60 36.93 3.41
596 600 2.682136 TCCATCCGGAGTTCGCCA 60.682 61.111 11.34 0.00 35.91 5.69
597 601 2.063979 TCCATCCGGAGTTCGCCAT 61.064 57.895 11.34 0.00 35.91 4.40
600 604 1.502231 CATCCGGAGTTCGCCATTAG 58.498 55.000 11.34 0.00 37.59 1.73
601 605 1.120530 ATCCGGAGTTCGCCATTAGT 58.879 50.000 11.34 0.00 37.59 2.24
602 606 1.766494 TCCGGAGTTCGCCATTAGTA 58.234 50.000 0.00 0.00 37.59 1.82
603 607 2.313317 TCCGGAGTTCGCCATTAGTAT 58.687 47.619 0.00 0.00 37.59 2.12
605 609 3.254166 TCCGGAGTTCGCCATTAGTATAC 59.746 47.826 0.00 0.00 37.59 1.47
606 610 3.572584 CGGAGTTCGCCATTAGTATACC 58.427 50.000 0.00 0.00 0.00 2.73
607 611 3.005050 CGGAGTTCGCCATTAGTATACCA 59.995 47.826 0.00 0.00 0.00 3.25
608 612 4.557205 GGAGTTCGCCATTAGTATACCAG 58.443 47.826 0.00 0.00 0.00 4.00
609 613 4.280174 GGAGTTCGCCATTAGTATACCAGA 59.720 45.833 0.00 0.00 0.00 3.86
610 614 5.047235 GGAGTTCGCCATTAGTATACCAGAT 60.047 44.000 0.00 0.00 0.00 2.90
611 615 6.152323 GGAGTTCGCCATTAGTATACCAGATA 59.848 42.308 0.00 0.00 0.00 1.98
613 617 6.720288 AGTTCGCCATTAGTATACCAGATACT 59.280 38.462 0.00 2.98 38.32 2.12
614 618 7.886970 AGTTCGCCATTAGTATACCAGATACTA 59.113 37.037 0.00 1.20 36.38 1.82
615 619 8.517878 GTTCGCCATTAGTATACCAGATACTAA 58.482 37.037 15.81 15.81 45.52 2.24
621 625 5.326200 AGTATACCAGATACTAATGGCGC 57.674 43.478 0.00 0.00 40.45 6.53
622 626 4.770531 AGTATACCAGATACTAATGGCGCA 59.229 41.667 10.83 0.00 40.45 6.09
623 627 2.240493 ACCAGATACTAATGGCGCAC 57.760 50.000 10.83 0.00 40.45 5.34
624 628 1.762957 ACCAGATACTAATGGCGCACT 59.237 47.619 10.83 0.00 40.45 4.40
626 630 3.005897 ACCAGATACTAATGGCGCACTAG 59.994 47.826 10.83 8.92 40.45 2.57
627 631 3.005897 CCAGATACTAATGGCGCACTAGT 59.994 47.826 10.83 14.49 0.00 2.57
628 632 3.983988 CAGATACTAATGGCGCACTAGTG 59.016 47.826 18.93 18.93 0.00 2.74
629 633 2.882927 TACTAATGGCGCACTAGTGG 57.117 50.000 23.95 14.74 0.00 4.00
665 669 5.897377 AAAAATTCTAATGGCGTGCTACT 57.103 34.783 0.00 0.00 0.00 2.57
668 672 7.568199 AAAATTCTAATGGCGTGCTACTAAT 57.432 32.000 0.00 0.00 0.00 1.73
669 673 6.545504 AATTCTAATGGCGTGCTACTAATG 57.454 37.500 0.00 0.00 0.00 1.90
670 674 3.990092 TCTAATGGCGTGCTACTAATGG 58.010 45.455 0.00 0.00 0.00 3.16
671 675 1.308998 AATGGCGTGCTACTAATGGC 58.691 50.000 0.00 0.00 0.00 4.40
672 676 0.880278 ATGGCGTGCTACTAATGGCG 60.880 55.000 0.00 0.00 34.35 5.69
673 677 2.626455 GCGTGCTACTAATGGCGC 59.374 61.111 0.00 0.00 39.31 6.53
675 679 1.636340 CGTGCTACTAATGGCGCAC 59.364 57.895 10.83 0.00 46.74 5.34
676 680 2.014594 GTGCTACTAATGGCGCACC 58.985 57.895 10.83 0.00 45.08 5.01
677 681 1.520564 TGCTACTAATGGCGCACCG 60.521 57.895 10.83 0.00 39.70 4.94
678 682 2.244651 GCTACTAATGGCGCACCGG 61.245 63.158 10.83 0.00 39.70 5.28
679 683 1.143183 CTACTAATGGCGCACCGGT 59.857 57.895 10.83 0.00 39.70 5.28
680 684 0.386476 CTACTAATGGCGCACCGGTA 59.614 55.000 6.87 4.59 39.70 4.02
681 685 0.386476 TACTAATGGCGCACCGGTAG 59.614 55.000 6.87 5.70 39.70 3.18
682 686 1.143183 CTAATGGCGCACCGGTAGT 59.857 57.895 6.87 0.00 39.70 2.73
690 694 2.435938 CACCGGTAGTGCGCCATT 60.436 61.111 6.87 0.00 40.28 3.16
691 695 1.153529 CACCGGTAGTGCGCCATTA 60.154 57.895 6.87 0.00 40.28 1.90
692 696 1.143183 ACCGGTAGTGCGCCATTAG 59.857 57.895 4.49 0.00 0.00 1.73
694 698 0.386476 CCGGTAGTGCGCCATTAGTA 59.614 55.000 4.18 0.00 0.00 1.82
695 699 1.602165 CCGGTAGTGCGCCATTAGTAG 60.602 57.143 4.18 0.00 0.00 2.57
706 710 2.718563 CCATTAGTAGGCAAAACCGGT 58.281 47.619 0.00 0.00 46.52 5.28
707 711 2.422127 CCATTAGTAGGCAAAACCGGTG 59.578 50.000 8.52 0.00 46.52 4.94
708 712 1.525941 TTAGTAGGCAAAACCGGTGC 58.474 50.000 8.52 7.59 46.52 5.01
709 713 0.671163 TAGTAGGCAAAACCGGTGCG 60.671 55.000 8.52 0.00 46.52 5.34
710 714 2.111460 TAGGCAAAACCGGTGCGT 59.889 55.556 8.52 12.21 46.52 5.24
711 715 1.962306 TAGGCAAAACCGGTGCGTC 60.962 57.895 8.52 0.12 46.52 5.19
713 717 2.642700 GCAAAACCGGTGCGTCAT 59.357 55.556 8.52 0.00 31.20 3.06
716 720 1.727857 GCAAAACCGGTGCGTCATTAG 60.728 52.381 8.52 0.00 31.20 1.73
717 721 1.533731 CAAAACCGGTGCGTCATTAGT 59.466 47.619 8.52 0.00 0.00 2.24
718 722 2.737783 CAAAACCGGTGCGTCATTAGTA 59.262 45.455 8.52 0.00 0.00 1.82
719 723 2.288961 AACCGGTGCGTCATTAGTAG 57.711 50.000 8.52 0.00 0.00 2.57
721 725 0.874607 CCGGTGCGTCATTAGTAGGC 60.875 60.000 0.00 0.00 0.00 3.93
722 726 0.874607 CGGTGCGTCATTAGTAGGCC 60.875 60.000 0.00 0.00 0.00 5.19
723 727 0.464452 GGTGCGTCATTAGTAGGCCT 59.536 55.000 11.78 11.78 0.00 5.19
724 728 1.134491 GGTGCGTCATTAGTAGGCCTT 60.134 52.381 12.58 0.00 0.00 4.35
725 729 2.629051 GTGCGTCATTAGTAGGCCTTT 58.371 47.619 12.58 1.84 0.00 3.11
727 731 3.063588 GTGCGTCATTAGTAGGCCTTTTC 59.936 47.826 12.58 1.81 0.00 2.29
728 732 2.612672 GCGTCATTAGTAGGCCTTTTCC 59.387 50.000 12.58 0.00 0.00 3.13
729 733 3.681874 GCGTCATTAGTAGGCCTTTTCCT 60.682 47.826 12.58 4.76 40.21 3.36
730 734 4.442472 GCGTCATTAGTAGGCCTTTTCCTA 60.442 45.833 12.58 3.66 37.66 2.94
731 735 5.290386 CGTCATTAGTAGGCCTTTTCCTAG 58.710 45.833 12.58 0.00 39.25 3.02
733 737 6.040166 CGTCATTAGTAGGCCTTTTCCTAGTA 59.960 42.308 12.58 0.00 41.40 1.82
734 738 7.435305 GTCATTAGTAGGCCTTTTCCTAGTAG 58.565 42.308 12.58 1.42 42.48 2.57
889 893 3.578282 TGTCATTCTAACAGACCAGCAGA 59.422 43.478 0.00 0.00 0.00 4.26
927 931 6.889722 ACCATTGCCATACTAACTAACATGTT 59.110 34.615 16.68 16.68 0.00 2.71
966 971 2.111999 CTCACCCCAAGGACGCAGAA 62.112 60.000 0.00 0.00 36.73 3.02
1004 1009 1.556911 CCAGAACTACCACCAGATGCT 59.443 52.381 0.00 0.00 0.00 3.79
1012 1017 1.179152 CCACCAGATGCTGCAAATCA 58.821 50.000 6.36 0.00 0.00 2.57
1031 1036 0.114954 ATCTCCTTTGGGCTGGCAAA 59.885 50.000 2.88 0.00 0.00 3.68
1061 1066 2.677289 CCATGGGCTCTGGTCAGCT 61.677 63.158 2.85 0.00 39.58 4.24
1140 1145 0.473326 ATGCTCCTGAGAAGGATGGC 59.527 55.000 0.00 0.00 37.34 4.40
1151 1156 0.035152 AAGGATGGCGAGCATGTTCA 60.035 50.000 10.36 0.00 0.00 3.18
1220 1225 2.005451 GAGCGTCTTCAACAGCATGAT 58.995 47.619 0.00 0.00 39.69 2.45
1370 1378 1.466167 CCTGCTGGACAACAAATCTCG 59.534 52.381 2.92 0.00 34.57 4.04
1391 1399 0.461163 GGTGTTGGGTTTGTTGCCAC 60.461 55.000 0.00 0.00 0.00 5.01
1397 1405 0.319469 GGGTTTGTTGCCACGGATTG 60.319 55.000 0.00 0.00 0.00 2.67
1398 1406 0.671251 GGTTTGTTGCCACGGATTGA 59.329 50.000 0.00 0.00 0.00 2.57
1399 1407 1.272212 GGTTTGTTGCCACGGATTGAT 59.728 47.619 0.00 0.00 0.00 2.57
1400 1408 2.595386 GTTTGTTGCCACGGATTGATC 58.405 47.619 0.00 0.00 0.00 2.92
1401 1409 1.902938 TTGTTGCCACGGATTGATCA 58.097 45.000 0.00 0.00 0.00 2.92
1402 1410 2.127271 TGTTGCCACGGATTGATCAT 57.873 45.000 0.00 0.00 0.00 2.45
1404 1412 1.066002 GTTGCCACGGATTGATCATGG 59.934 52.381 7.77 7.77 37.54 3.66
1407 1415 1.538512 GCCACGGATTGATCATGGATG 59.461 52.381 15.10 2.70 36.97 3.51
1409 1417 2.810274 CCACGGATTGATCATGGATGTC 59.190 50.000 6.45 0.00 36.97 3.06
1410 1418 3.469739 CACGGATTGATCATGGATGTCA 58.530 45.455 0.00 0.00 0.00 3.58
1412 1420 4.517832 CACGGATTGATCATGGATGTCAAT 59.482 41.667 12.88 12.88 39.20 2.57
1413 1421 5.009310 CACGGATTGATCATGGATGTCAATT 59.991 40.000 0.00 1.99 37.97 2.32
1414 1422 5.240183 ACGGATTGATCATGGATGTCAATTC 59.760 40.000 0.00 11.85 37.97 2.17
1415 1423 5.472478 CGGATTGATCATGGATGTCAATTCT 59.528 40.000 0.00 0.00 37.97 2.40
1416 1424 6.348295 CGGATTGATCATGGATGTCAATTCTC 60.348 42.308 0.00 6.42 37.97 2.87
1418 1426 6.937436 TTGATCATGGATGTCAATTCTCTG 57.063 37.500 0.00 0.00 0.00 3.35
1419 1427 6.243216 TGATCATGGATGTCAATTCTCTGA 57.757 37.500 0.00 0.00 0.00 3.27
1421 1429 7.287810 TGATCATGGATGTCAATTCTCTGAAT 58.712 34.615 0.00 0.00 0.00 2.57
1422 1430 7.778382 TGATCATGGATGTCAATTCTCTGAATT 59.222 33.333 0.00 0.25 0.00 2.17
1423 1431 7.563888 TCATGGATGTCAATTCTCTGAATTC 57.436 36.000 0.00 0.00 0.00 2.17
1424 1432 7.114095 TCATGGATGTCAATTCTCTGAATTCA 58.886 34.615 8.12 8.12 0.00 2.57
1425 1433 6.748333 TGGATGTCAATTCTCTGAATTCAC 57.252 37.500 3.38 1.98 0.00 3.18
1427 1435 6.373495 TGGATGTCAATTCTCTGAATTCACAG 59.627 38.462 13.33 3.99 39.02 3.66
1430 1438 8.853077 ATGTCAATTCTCTGAATTCACAGTTA 57.147 30.769 13.33 0.00 38.79 2.24
1431 1439 8.315391 TGTCAATTCTCTGAATTCACAGTTAG 57.685 34.615 3.38 0.00 38.79 2.34
1432 1440 7.933577 TGTCAATTCTCTGAATTCACAGTTAGT 59.066 33.333 3.38 0.00 38.79 2.24
1434 1442 8.777413 TCAATTCTCTGAATTCACAGTTAGTTG 58.223 33.333 3.38 8.38 38.79 3.16
1437 1445 6.582636 TCTCTGAATTCACAGTTAGTTGTGT 58.417 36.000 3.38 0.00 46.60 3.72
1438 1446 6.701841 TCTCTGAATTCACAGTTAGTTGTGTC 59.298 38.462 3.38 0.00 46.60 3.67
1439 1447 6.345298 TCTGAATTCACAGTTAGTTGTGTCA 58.655 36.000 3.38 2.86 46.60 3.58
1440 1448 6.821160 TCTGAATTCACAGTTAGTTGTGTCAA 59.179 34.615 3.38 0.00 46.60 3.18
1441 1449 6.781138 TGAATTCACAGTTAGTTGTGTCAAC 58.219 36.000 3.38 4.69 46.60 3.18
1442 1450 5.751243 ATTCACAGTTAGTTGTGTCAACC 57.249 39.130 8.68 0.00 46.60 3.77
1443 1451 3.191669 TCACAGTTAGTTGTGTCAACCG 58.808 45.455 8.68 0.00 46.60 4.44
1444 1452 1.937899 ACAGTTAGTTGTGTCAACCGC 59.062 47.619 8.68 1.27 0.00 5.68
1446 1454 2.032894 CAGTTAGTTGTGTCAACCGCAG 60.033 50.000 8.68 0.00 34.45 5.18
1450 1458 1.153269 TTGTGTCAACCGCAGCAGA 60.153 52.632 0.00 0.00 34.45 4.26
1451 1459 0.746204 TTGTGTCAACCGCAGCAGAA 60.746 50.000 0.00 0.00 34.45 3.02
1452 1460 0.746204 TGTGTCAACCGCAGCAGAAA 60.746 50.000 0.00 0.00 0.00 2.52
1459 1467 2.434185 CGCAGCAGAAACGGCCTA 60.434 61.111 0.00 0.00 0.00 3.93
1462 1470 2.125512 AGCAGAAACGGCCTAGCG 60.126 61.111 0.00 0.00 0.00 4.26
1463 1471 3.865830 GCAGAAACGGCCTAGCGC 61.866 66.667 0.00 0.00 0.00 5.92
1465 1473 2.032634 CAGAAACGGCCTAGCGCAA 61.033 57.895 11.47 0.00 40.31 4.85
1466 1474 1.741770 AGAAACGGCCTAGCGCAAG 60.742 57.895 11.47 0.00 40.31 4.01
1469 1477 2.536997 AAACGGCCTAGCGCAAGGAT 62.537 55.000 11.47 0.00 39.15 3.24
1470 1478 2.203070 CGGCCTAGCGCAAGGATT 60.203 61.111 11.47 0.00 39.15 3.01
1471 1479 1.069090 CGGCCTAGCGCAAGGATTA 59.931 57.895 11.47 0.00 39.15 1.75
1472 1480 0.946221 CGGCCTAGCGCAAGGATTAG 60.946 60.000 11.47 0.41 39.15 1.73
1473 1481 1.231296 GGCCTAGCGCAAGGATTAGC 61.231 60.000 11.47 0.00 39.15 3.09
1474 1482 0.532862 GCCTAGCGCAAGGATTAGCA 60.533 55.000 11.47 0.00 39.15 3.49
1475 1483 1.506493 CCTAGCGCAAGGATTAGCAG 58.494 55.000 11.47 0.00 39.15 4.24
1476 1484 0.864455 CTAGCGCAAGGATTAGCAGC 59.136 55.000 11.47 0.00 34.05 5.25
1477 1485 0.177836 TAGCGCAAGGATTAGCAGCA 59.822 50.000 11.47 0.00 34.05 4.41
1478 1486 1.063166 GCGCAAGGATTAGCAGCAC 59.937 57.895 0.30 0.00 32.27 4.40
1480 1488 1.723870 GCAAGGATTAGCAGCACGG 59.276 57.895 0.00 0.00 0.00 4.94
1482 1490 1.009829 CAAGGATTAGCAGCACGGAC 58.990 55.000 0.00 0.00 0.00 4.79
1483 1491 0.107654 AAGGATTAGCAGCACGGACC 60.108 55.000 0.00 0.00 0.00 4.46
1485 1493 0.811616 GGATTAGCAGCACGGACCAG 60.812 60.000 0.00 0.00 0.00 4.00
1489 1497 1.676678 TAGCAGCACGGACCAGATCC 61.677 60.000 0.00 0.00 45.20 3.36
1492 1500 0.460987 CAGCACGGACCAGATCCTTC 60.461 60.000 0.00 0.00 46.69 3.46
1493 1501 1.153349 GCACGGACCAGATCCTTCC 60.153 63.158 0.00 0.00 46.69 3.46
1495 1503 3.617368 CGGACCAGATCCTTCCGT 58.383 61.111 15.76 0.00 46.69 4.69
1497 1505 1.108776 CGGACCAGATCCTTCCGTAA 58.891 55.000 15.76 0.00 46.69 3.18
1498 1506 1.687123 CGGACCAGATCCTTCCGTAAT 59.313 52.381 15.76 0.00 46.69 1.89
1499 1507 2.288273 CGGACCAGATCCTTCCGTAATC 60.288 54.545 15.76 0.00 46.69 1.75
1515 1523 2.978000 TCGGAAGATGCTCGCCAA 59.022 55.556 0.00 0.00 33.31 4.52
1516 1524 1.522092 TCGGAAGATGCTCGCCAAT 59.478 52.632 0.00 0.00 33.31 3.16
1517 1525 0.811219 TCGGAAGATGCTCGCCAATG 60.811 55.000 0.00 0.00 33.31 2.82
1521 1529 1.599542 GAAGATGCTCGCCAATGTACC 59.400 52.381 0.00 0.00 0.00 3.34
1522 1530 0.530650 AGATGCTCGCCAATGTACCG 60.531 55.000 0.00 0.00 0.00 4.02
1524 1532 1.966901 ATGCTCGCCAATGTACCGGA 61.967 55.000 9.46 0.00 0.00 5.14
1525 1533 1.448893 GCTCGCCAATGTACCGGAA 60.449 57.895 9.46 0.00 0.00 4.30
1527 1535 1.006832 CTCGCCAATGTACCGGAAAG 58.993 55.000 9.46 0.00 0.00 2.62
1528 1536 1.022451 TCGCCAATGTACCGGAAAGC 61.022 55.000 9.46 0.00 0.00 3.51
1529 1537 1.807226 GCCAATGTACCGGAAAGCC 59.193 57.895 9.46 0.00 0.00 4.35
1532 1540 1.676006 CCAATGTACCGGAAAGCCATC 59.324 52.381 9.46 0.00 0.00 3.51
1533 1541 2.364632 CAATGTACCGGAAAGCCATCA 58.635 47.619 9.46 0.00 0.00 3.07
1535 1543 2.325583 TGTACCGGAAAGCCATCATC 57.674 50.000 9.46 0.00 0.00 2.92
1536 1544 1.134220 TGTACCGGAAAGCCATCATCC 60.134 52.381 9.46 0.00 0.00 3.51
1538 1546 0.181350 ACCGGAAAGCCATCATCCTC 59.819 55.000 9.46 0.00 0.00 3.71
1539 1547 0.471617 CCGGAAAGCCATCATCCTCT 59.528 55.000 0.00 0.00 0.00 3.69
1540 1548 1.590932 CGGAAAGCCATCATCCTCTG 58.409 55.000 0.00 0.00 0.00 3.35
1542 1550 2.224475 CGGAAAGCCATCATCCTCTGAT 60.224 50.000 0.00 0.00 45.78 2.90
1554 1562 3.382048 TCCTCTGATGATCGCAGAATG 57.618 47.619 16.07 11.52 43.58 2.67
1555 1563 2.697229 TCCTCTGATGATCGCAGAATGT 59.303 45.455 16.07 0.00 43.58 2.71
1556 1564 3.891366 TCCTCTGATGATCGCAGAATGTA 59.109 43.478 16.07 3.40 43.58 2.29
1557 1565 3.986572 CCTCTGATGATCGCAGAATGTAC 59.013 47.826 16.07 0.00 43.58 2.90
1560 1568 3.721035 TGATGATCGCAGAATGTACTGG 58.279 45.455 0.00 0.00 43.58 4.00
1563 1571 3.521560 TGATCGCAGAATGTACTGGTTC 58.478 45.455 0.00 0.00 43.58 3.62
1564 1572 3.195610 TGATCGCAGAATGTACTGGTTCT 59.804 43.478 0.00 0.00 43.58 3.01
1566 1574 3.585862 TCGCAGAATGTACTGGTTCTTC 58.414 45.455 0.00 0.00 39.31 2.87
1567 1575 3.006430 TCGCAGAATGTACTGGTTCTTCA 59.994 43.478 0.00 0.00 39.31 3.02
1568 1576 3.369147 CGCAGAATGTACTGGTTCTTCAG 59.631 47.826 0.00 0.00 39.31 3.02
1570 1578 4.629200 GCAGAATGTACTGGTTCTTCAGAG 59.371 45.833 0.00 0.00 39.31 3.35
1571 1579 5.788450 CAGAATGTACTGGTTCTTCAGAGT 58.212 41.667 0.00 0.00 38.11 3.24
1574 1582 6.948886 AGAATGTACTGGTTCTTCAGAGTAGA 59.051 38.462 0.00 0.00 38.11 2.59
1576 1584 4.459685 TGTACTGGTTCTTCAGAGTAGAGC 59.540 45.833 0.00 0.00 38.11 4.09
1577 1585 3.773560 ACTGGTTCTTCAGAGTAGAGCT 58.226 45.455 0.00 0.00 38.11 4.09
1578 1586 4.156477 ACTGGTTCTTCAGAGTAGAGCTT 58.844 43.478 0.00 0.00 38.11 3.74
1579 1587 4.219725 ACTGGTTCTTCAGAGTAGAGCTTC 59.780 45.833 0.00 0.00 38.11 3.86
1581 1589 4.461081 TGGTTCTTCAGAGTAGAGCTTCTC 59.539 45.833 0.00 0.00 0.00 2.87
1582 1590 4.705023 GGTTCTTCAGAGTAGAGCTTCTCT 59.295 45.833 10.01 10.01 43.83 3.10
1583 1591 5.883673 GGTTCTTCAGAGTAGAGCTTCTCTA 59.116 44.000 13.81 0.00 41.50 2.43
1594 1602 5.950544 AGAGCTTCTCTACTCTAGTCTCA 57.049 43.478 0.00 0.00 41.44 3.27
1595 1603 6.308015 AGAGCTTCTCTACTCTAGTCTCAA 57.692 41.667 0.00 0.00 41.44 3.02
1596 1604 6.717289 AGAGCTTCTCTACTCTAGTCTCAAA 58.283 40.000 0.00 0.00 41.44 2.69
1617 1625 1.165270 AAAGAACCCAGTATGCGTGC 58.835 50.000 0.00 0.00 31.97 5.34
1619 1627 0.253044 AGAACCCAGTATGCGTGCAT 59.747 50.000 12.54 12.54 40.19 3.96
1628 1636 2.700722 TATGCGTGCATACCAGGAAA 57.299 45.000 10.37 0.00 37.82 3.13
1631 1639 0.248621 GCGTGCATACCAGGAAATGC 60.249 55.000 19.08 19.08 46.92 3.56
1632 1640 1.382522 CGTGCATACCAGGAAATGCT 58.617 50.000 23.50 0.00 46.87 3.79
1633 1641 1.064505 CGTGCATACCAGGAAATGCTG 59.935 52.381 23.50 15.89 46.87 4.41
1634 1642 2.368439 GTGCATACCAGGAAATGCTGA 58.632 47.619 23.50 9.17 46.87 4.26
1635 1643 2.954318 GTGCATACCAGGAAATGCTGAT 59.046 45.455 23.50 0.00 46.87 2.90
1636 1644 3.382546 GTGCATACCAGGAAATGCTGATT 59.617 43.478 23.50 0.00 46.87 2.57
1638 1646 4.467082 TGCATACCAGGAAATGCTGATTTT 59.533 37.500 23.50 0.00 46.87 1.82
1639 1647 5.046448 TGCATACCAGGAAATGCTGATTTTT 60.046 36.000 23.50 0.00 46.87 1.94
1687 3468 5.048846 TGTTCAGGCCTCTAGAAAAAGTT 57.951 39.130 0.00 0.00 0.00 2.66
1688 3469 4.821805 TGTTCAGGCCTCTAGAAAAAGTTG 59.178 41.667 0.00 0.00 0.00 3.16
1705 3486 9.967245 GAAAAAGTTGTTTCTTACATTTGGTTC 57.033 29.630 0.00 0.00 36.44 3.62
1706 3487 9.719355 AAAAAGTTGTTTCTTACATTTGGTTCT 57.281 25.926 0.00 0.00 36.44 3.01
1722 3566 3.181451 TGGTTCTTCACTTCAGACATGCT 60.181 43.478 0.00 0.00 0.00 3.79
1723 3567 3.817647 GGTTCTTCACTTCAGACATGCTT 59.182 43.478 0.00 0.00 0.00 3.91
1724 3568 4.083590 GGTTCTTCACTTCAGACATGCTTC 60.084 45.833 0.00 0.00 0.00 3.86
1736 3580 3.054139 AGACATGCTTCTTCCATGCCTTA 60.054 43.478 0.00 0.00 42.89 2.69
1750 3594 5.183713 TCCATGCCTTAAACTCTTGATGTTG 59.816 40.000 0.00 0.00 0.00 3.33
1801 3645 9.601217 TTTCTTTTTCATCTATAGCTACTGGAC 57.399 33.333 0.00 0.00 0.00 4.02
1982 3826 5.975693 TTGAGGCGGAAAAAGTAATTGAT 57.024 34.783 0.00 0.00 0.00 2.57
1983 3827 5.309323 TGAGGCGGAAAAAGTAATTGATG 57.691 39.130 0.00 0.00 0.00 3.07
2024 3870 7.356089 TCCGTATTCTTGACCTACACAATAT 57.644 36.000 0.00 0.00 0.00 1.28
2025 3871 8.467963 TCCGTATTCTTGACCTACACAATATA 57.532 34.615 0.00 0.00 0.00 0.86
2026 3872 9.085645 TCCGTATTCTTGACCTACACAATATAT 57.914 33.333 0.00 0.00 0.00 0.86
2027 3873 9.706691 CCGTATTCTTGACCTACACAATATATT 57.293 33.333 0.00 0.00 0.00 1.28
2063 3909 7.836479 AGGACCTACACCATAAATAGTACTC 57.164 40.000 0.00 0.00 0.00 2.59
2099 3946 5.114081 GTGTTGCTTACGATAGGGTACATT 58.886 41.667 0.00 0.00 43.77 2.71
2120 3967 7.572759 ACATTGTGTACATTACTTCTTCAACG 58.427 34.615 0.00 0.00 0.00 4.10
2197 4044 4.466370 TCGAGAATTTCATAGTCCACACCT 59.534 41.667 0.00 0.00 0.00 4.00
2321 4181 4.675063 AATAGTGGTCCCTGGTGAAAAT 57.325 40.909 0.00 0.00 0.00 1.82
2326 4186 2.962421 TGGTCCCTGGTGAAAATGTTTC 59.038 45.455 0.00 0.00 0.00 2.78
2348 4208 4.811024 TCAGAATGAAAGGCATCGTGATAC 59.189 41.667 0.00 0.00 45.97 2.24
2363 4223 6.633500 TCGTGATACATGATACATGTGAGA 57.367 37.500 22.27 13.12 33.76 3.27
2398 4258 2.073816 TGAAGAAATTTCGACTCGGGC 58.926 47.619 12.42 0.00 0.00 6.13
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
374 378 0.587768 TGTGAGAACATGTGCTTGCG 59.412 50.000 8.06 0.00 0.00 4.85
527 531 2.049063 GACTGCCGACAAGCTCGT 60.049 61.111 0.00 0.00 41.18 4.18
583 587 1.766494 TACTAATGGCGAACTCCGGA 58.234 50.000 2.93 2.93 39.04 5.14
597 601 6.434965 TGCGCCATTAGTATCTGGTATACTAA 59.565 38.462 16.03 16.03 45.52 2.24
600 604 4.863131 GTGCGCCATTAGTATCTGGTATAC 59.137 45.833 4.18 0.00 34.86 1.47
601 605 4.770531 AGTGCGCCATTAGTATCTGGTATA 59.229 41.667 4.18 0.00 34.86 1.47
602 606 3.578716 AGTGCGCCATTAGTATCTGGTAT 59.421 43.478 4.18 0.00 34.86 2.73
603 607 2.963101 AGTGCGCCATTAGTATCTGGTA 59.037 45.455 4.18 0.00 34.86 3.25
605 609 2.533266 AGTGCGCCATTAGTATCTGG 57.467 50.000 4.18 0.00 35.53 3.86
606 610 3.983988 CACTAGTGCGCCATTAGTATCTG 59.016 47.826 10.54 0.00 35.29 2.90
607 611 3.005897 CCACTAGTGCGCCATTAGTATCT 59.994 47.826 17.86 0.00 35.29 1.98
608 612 3.243771 ACCACTAGTGCGCCATTAGTATC 60.244 47.826 17.86 0.00 35.29 2.24
609 613 2.698797 ACCACTAGTGCGCCATTAGTAT 59.301 45.455 17.86 0.00 35.29 2.12
610 614 2.104967 ACCACTAGTGCGCCATTAGTA 58.895 47.619 17.86 0.00 35.29 1.82
611 615 0.902531 ACCACTAGTGCGCCATTAGT 59.097 50.000 17.86 7.36 37.38 2.24
613 617 3.451793 CACCACTAGTGCGCCATTA 57.548 52.632 17.86 0.00 40.28 1.90
614 618 4.301505 CACCACTAGTGCGCCATT 57.698 55.556 17.86 0.00 40.28 3.16
643 647 5.897377 AGTAGCACGCCATTAGAATTTTT 57.103 34.783 0.00 0.00 0.00 1.94
644 648 6.995511 TTAGTAGCACGCCATTAGAATTTT 57.004 33.333 0.00 0.00 0.00 1.82
645 649 6.017109 CCATTAGTAGCACGCCATTAGAATTT 60.017 38.462 0.00 0.00 0.00 1.82
646 650 5.470098 CCATTAGTAGCACGCCATTAGAATT 59.530 40.000 0.00 0.00 0.00 2.17
647 651 4.997395 CCATTAGTAGCACGCCATTAGAAT 59.003 41.667 0.00 0.00 0.00 2.40
648 652 4.377021 CCATTAGTAGCACGCCATTAGAA 58.623 43.478 0.00 0.00 0.00 2.10
649 653 3.802329 GCCATTAGTAGCACGCCATTAGA 60.802 47.826 0.00 0.00 0.00 2.10
650 654 2.480419 GCCATTAGTAGCACGCCATTAG 59.520 50.000 0.00 0.00 0.00 1.73
652 656 1.308998 GCCATTAGTAGCACGCCATT 58.691 50.000 0.00 0.00 0.00 3.16
653 657 0.880278 CGCCATTAGTAGCACGCCAT 60.880 55.000 0.00 0.00 0.00 4.40
654 658 1.520564 CGCCATTAGTAGCACGCCA 60.521 57.895 0.00 0.00 0.00 5.69
655 659 2.882366 GCGCCATTAGTAGCACGCC 61.882 63.158 0.00 0.00 40.43 5.68
656 660 2.171079 TGCGCCATTAGTAGCACGC 61.171 57.895 4.18 0.00 46.05 5.34
657 661 4.102561 TGCGCCATTAGTAGCACG 57.897 55.556 4.18 0.00 34.39 5.34
659 663 1.520564 CGGTGCGCCATTAGTAGCA 60.521 57.895 18.18 0.00 37.26 3.49
660 664 2.244651 CCGGTGCGCCATTAGTAGC 61.245 63.158 18.18 0.00 34.09 3.58
661 665 0.386476 TACCGGTGCGCCATTAGTAG 59.614 55.000 19.93 0.00 34.09 2.57
663 667 1.143183 CTACCGGTGCGCCATTAGT 59.857 57.895 19.93 10.09 34.09 2.24
664 668 1.143183 ACTACCGGTGCGCCATTAG 59.857 57.895 19.93 17.03 34.09 1.73
665 669 1.153529 CACTACCGGTGCGCCATTA 60.154 57.895 19.93 5.39 39.22 1.90
675 679 0.386476 TACTAATGGCGCACTACCGG 59.614 55.000 10.83 0.00 0.00 5.28
676 680 1.602165 CCTACTAATGGCGCACTACCG 60.602 57.143 10.83 0.00 0.00 4.02
677 681 1.872653 GCCTACTAATGGCGCACTACC 60.873 57.143 10.83 0.00 41.03 3.18
678 682 1.499049 GCCTACTAATGGCGCACTAC 58.501 55.000 10.83 0.00 41.03 2.73
679 683 3.980583 GCCTACTAATGGCGCACTA 57.019 52.632 10.83 0.00 41.03 2.74
680 684 4.857251 GCCTACTAATGGCGCACT 57.143 55.556 10.83 0.00 41.03 4.40
686 690 2.422127 CACCGGTTTTGCCTACTAATGG 59.578 50.000 2.97 0.00 34.25 3.16
687 691 2.159435 GCACCGGTTTTGCCTACTAATG 60.159 50.000 2.97 0.00 33.58 1.90
688 692 2.089201 GCACCGGTTTTGCCTACTAAT 58.911 47.619 2.97 0.00 33.58 1.73
689 693 1.525941 GCACCGGTTTTGCCTACTAA 58.474 50.000 2.97 0.00 33.58 2.24
690 694 0.671163 CGCACCGGTTTTGCCTACTA 60.671 55.000 2.97 0.00 36.57 1.82
691 695 1.964373 CGCACCGGTTTTGCCTACT 60.964 57.895 2.97 0.00 36.57 2.57
692 696 2.178892 GACGCACCGGTTTTGCCTAC 62.179 60.000 2.97 0.00 36.57 3.18
694 698 3.284449 GACGCACCGGTTTTGCCT 61.284 61.111 2.97 0.00 36.57 4.75
695 699 2.414840 AATGACGCACCGGTTTTGCC 62.415 55.000 2.97 0.00 36.57 4.52
697 701 1.533731 ACTAATGACGCACCGGTTTTG 59.466 47.619 2.97 0.00 0.00 2.44
699 703 2.613691 CTACTAATGACGCACCGGTTT 58.386 47.619 2.97 0.00 0.00 3.27
701 705 0.458669 CCTACTAATGACGCACCGGT 59.541 55.000 0.00 0.00 0.00 5.28
702 706 0.874607 GCCTACTAATGACGCACCGG 60.875 60.000 0.00 0.00 0.00 5.28
703 707 0.874607 GGCCTACTAATGACGCACCG 60.875 60.000 0.00 0.00 0.00 4.94
704 708 0.464452 AGGCCTACTAATGACGCACC 59.536 55.000 1.29 0.00 0.00 5.01
705 709 2.311124 AAGGCCTACTAATGACGCAC 57.689 50.000 5.16 0.00 0.00 5.34
706 710 3.267483 GAAAAGGCCTACTAATGACGCA 58.733 45.455 5.16 0.00 0.00 5.24
707 711 2.612672 GGAAAAGGCCTACTAATGACGC 59.387 50.000 5.16 0.00 0.00 5.19
708 712 4.138487 AGGAAAAGGCCTACTAATGACG 57.862 45.455 5.16 0.00 36.22 4.35
709 713 6.236558 ACTAGGAAAAGGCCTACTAATGAC 57.763 41.667 5.16 0.00 39.50 3.06
710 714 7.069578 CACTACTAGGAAAAGGCCTACTAATGA 59.930 40.741 5.16 0.00 39.50 2.57
711 715 7.147707 ACACTACTAGGAAAAGGCCTACTAATG 60.148 40.741 5.16 5.74 39.50 1.90
713 717 6.154021 CACACTACTAGGAAAAGGCCTACTAA 59.846 42.308 5.16 0.00 39.50 2.24
716 720 4.382793 CCACACTACTAGGAAAAGGCCTAC 60.383 50.000 5.16 0.00 39.50 3.18
717 721 3.773119 CCACACTACTAGGAAAAGGCCTA 59.227 47.826 5.16 0.00 39.50 3.93
718 722 2.572104 CCACACTACTAGGAAAAGGCCT 59.428 50.000 0.00 0.00 42.15 5.19
719 723 2.570302 TCCACACTACTAGGAAAAGGCC 59.430 50.000 0.00 0.00 0.00 5.19
721 725 4.382147 GCTCTCCACACTACTAGGAAAAGG 60.382 50.000 0.00 0.00 0.00 3.11
722 726 4.464597 AGCTCTCCACACTACTAGGAAAAG 59.535 45.833 0.00 0.00 0.00 2.27
723 727 4.417437 AGCTCTCCACACTACTAGGAAAA 58.583 43.478 0.00 0.00 0.00 2.29
724 728 4.048970 AGCTCTCCACACTACTAGGAAA 57.951 45.455 0.00 0.00 0.00 3.13
725 729 3.741245 AGCTCTCCACACTACTAGGAA 57.259 47.619 0.00 0.00 0.00 3.36
727 731 3.482436 CCTAGCTCTCCACACTACTAGG 58.518 54.545 0.00 0.00 40.45 3.02
728 732 3.880490 CACCTAGCTCTCCACACTACTAG 59.120 52.174 0.00 0.00 0.00 2.57
729 733 3.371702 CCACCTAGCTCTCCACACTACTA 60.372 52.174 0.00 0.00 0.00 1.82
730 734 2.621929 CCACCTAGCTCTCCACACTACT 60.622 54.545 0.00 0.00 0.00 2.57
731 735 1.751924 CCACCTAGCTCTCCACACTAC 59.248 57.143 0.00 0.00 0.00 2.73
733 737 0.409876 TCCACCTAGCTCTCCACACT 59.590 55.000 0.00 0.00 0.00 3.55
734 738 1.490574 ATCCACCTAGCTCTCCACAC 58.509 55.000 0.00 0.00 0.00 3.82
889 893 2.961062 GGCAATGGTTCATAGGCTTGAT 59.039 45.455 0.00 0.00 0.00 2.57
927 931 2.108250 AGCCTAAGAAGAAACAGGGCAA 59.892 45.455 0.00 0.00 40.40 4.52
966 971 2.780010 CTGGATAGGGGTGTTGAGGAAT 59.220 50.000 0.00 0.00 0.00 3.01
1004 1009 1.826720 GCCCAAAGGAGATGATTTGCA 59.173 47.619 0.00 0.00 35.53 4.08
1012 1017 0.114954 TTTGCCAGCCCAAAGGAGAT 59.885 50.000 0.00 0.00 33.47 2.75
1061 1066 3.315142 GACATCGGTGAGCCCAGCA 62.315 63.158 0.65 0.00 40.63 4.41
1151 1156 5.033589 CTTCCTCTTCCTATGAAGCACAT 57.966 43.478 3.07 2.31 46.28 3.21
1159 1164 0.250081 GCCCGCTTCCTCTTCCTATG 60.250 60.000 0.00 0.00 0.00 2.23
1220 1225 0.397941 CACCTCCTTCACTGCCTCAA 59.602 55.000 0.00 0.00 0.00 3.02
1370 1378 1.145156 GCAACAAACCCAACACCCC 59.855 57.895 0.00 0.00 0.00 4.95
1391 1399 5.472478 AGAATTGACATCCATGATCAATCCG 59.528 40.000 0.00 0.00 37.45 4.18
1397 1405 7.747155 ATTCAGAGAATTGACATCCATGATC 57.253 36.000 0.00 0.00 0.00 2.92
1398 1406 7.778382 TGAATTCAGAGAATTGACATCCATGAT 59.222 33.333 3.38 0.00 0.00 2.45
1399 1407 7.066645 GTGAATTCAGAGAATTGACATCCATGA 59.933 37.037 8.80 0.00 0.00 3.07
1400 1408 7.148137 TGTGAATTCAGAGAATTGACATCCATG 60.148 37.037 16.87 0.00 30.79 3.66
1401 1409 6.888088 TGTGAATTCAGAGAATTGACATCCAT 59.112 34.615 16.87 0.00 30.79 3.41
1402 1410 6.240145 TGTGAATTCAGAGAATTGACATCCA 58.760 36.000 16.87 3.83 30.79 3.41
1404 1412 7.375106 ACTGTGAATTCAGAGAATTGACATC 57.625 36.000 32.61 8.03 39.36 3.06
1407 1415 8.316640 ACTAACTGTGAATTCAGAGAATTGAC 57.683 34.615 32.61 12.93 39.36 3.18
1409 1417 8.562892 ACAACTAACTGTGAATTCAGAGAATTG 58.437 33.333 32.61 27.37 39.36 2.32
1410 1418 8.682936 ACAACTAACTGTGAATTCAGAGAATT 57.317 30.769 32.61 21.50 39.36 2.17
1424 1432 1.937899 GCGGTTGACACAACTAACTGT 59.062 47.619 13.05 0.00 34.12 3.55
1425 1433 1.937223 TGCGGTTGACACAACTAACTG 59.063 47.619 13.05 0.00 34.60 3.16
1427 1435 1.333791 GCTGCGGTTGACACAACTAAC 60.334 52.381 13.05 5.32 0.00 2.34
1430 1438 1.439353 CTGCTGCGGTTGACACAACT 61.439 55.000 13.05 0.00 0.00 3.16
1431 1439 1.009675 CTGCTGCGGTTGACACAAC 60.010 57.895 0.00 6.13 0.00 3.32
1432 1440 0.746204 TTCTGCTGCGGTTGACACAA 60.746 50.000 8.55 0.00 0.00 3.33
1434 1442 0.317020 GTTTCTGCTGCGGTTGACAC 60.317 55.000 8.55 0.00 0.00 3.67
1437 1445 2.250939 CCGTTTCTGCTGCGGTTGA 61.251 57.895 8.55 0.00 40.53 3.18
1438 1446 2.252260 CCGTTTCTGCTGCGGTTG 59.748 61.111 8.55 0.00 40.53 3.77
1439 1447 3.660111 GCCGTTTCTGCTGCGGTT 61.660 61.111 8.55 0.00 46.41 4.44
1442 1450 2.434185 TAGGCCGTTTCTGCTGCG 60.434 61.111 0.00 0.00 0.00 5.18
1443 1451 2.754995 GCTAGGCCGTTTCTGCTGC 61.755 63.158 0.00 0.00 0.00 5.25
1444 1452 2.456119 CGCTAGGCCGTTTCTGCTG 61.456 63.158 0.00 0.00 0.00 4.41
1446 1454 3.865830 GCGCTAGGCCGTTTCTGC 61.866 66.667 0.00 0.00 34.80 4.26
1450 1458 2.536997 ATCCTTGCGCTAGGCCGTTT 62.537 55.000 29.93 11.20 42.61 3.60
1451 1459 2.536997 AATCCTTGCGCTAGGCCGTT 62.537 55.000 29.93 20.83 42.61 4.44
1452 1460 1.682451 TAATCCTTGCGCTAGGCCGT 61.682 55.000 29.93 19.56 42.61 5.68
1455 1463 0.532862 TGCTAATCCTTGCGCTAGGC 60.533 55.000 29.93 19.06 43.96 3.93
1456 1464 1.506493 CTGCTAATCCTTGCGCTAGG 58.494 55.000 29.08 29.08 36.59 3.02
1457 1465 0.864455 GCTGCTAATCCTTGCGCTAG 59.136 55.000 12.15 12.15 0.00 3.42
1458 1466 0.177836 TGCTGCTAATCCTTGCGCTA 59.822 50.000 9.73 0.00 32.88 4.26
1459 1467 1.078214 TGCTGCTAATCCTTGCGCT 60.078 52.632 9.73 0.00 32.88 5.92
1462 1470 0.744414 TCCGTGCTGCTAATCCTTGC 60.744 55.000 0.00 0.00 0.00 4.01
1463 1471 1.009829 GTCCGTGCTGCTAATCCTTG 58.990 55.000 0.00 0.00 0.00 3.61
1465 1473 1.264749 TGGTCCGTGCTGCTAATCCT 61.265 55.000 0.00 0.00 0.00 3.24
1466 1474 0.811616 CTGGTCCGTGCTGCTAATCC 60.812 60.000 0.00 0.00 0.00 3.01
1469 1477 0.175760 GATCTGGTCCGTGCTGCTAA 59.824 55.000 0.00 0.00 0.00 3.09
1470 1478 1.676678 GGATCTGGTCCGTGCTGCTA 61.677 60.000 0.00 0.00 37.23 3.49
1471 1479 2.581354 GATCTGGTCCGTGCTGCT 59.419 61.111 0.00 0.00 0.00 4.24
1472 1480 2.512515 GGATCTGGTCCGTGCTGC 60.513 66.667 0.00 0.00 37.23 5.25
1480 1488 3.014604 CGATTACGGAAGGATCTGGTC 57.985 52.381 0.00 0.00 36.16 4.02
1493 1501 0.778815 GCGAGCATCTTCCGATTACG 59.221 55.000 0.00 0.00 39.43 3.18
1494 1502 1.140816 GGCGAGCATCTTCCGATTAC 58.859 55.000 0.00 0.00 0.00 1.89
1495 1503 0.750249 TGGCGAGCATCTTCCGATTA 59.250 50.000 0.00 0.00 0.00 1.75
1497 1505 0.107456 ATTGGCGAGCATCTTCCGAT 59.893 50.000 0.00 0.00 0.00 4.18
1498 1506 0.811219 CATTGGCGAGCATCTTCCGA 60.811 55.000 0.00 0.00 0.00 4.55
1499 1507 1.091771 ACATTGGCGAGCATCTTCCG 61.092 55.000 0.00 0.00 0.00 4.30
1501 1509 1.599542 GGTACATTGGCGAGCATCTTC 59.400 52.381 0.00 0.00 0.00 2.87
1502 1510 1.668419 GGTACATTGGCGAGCATCTT 58.332 50.000 0.00 0.00 0.00 2.40
1504 1512 1.498865 CCGGTACATTGGCGAGCATC 61.499 60.000 0.00 0.00 0.00 3.91
1506 1514 2.125310 CCGGTACATTGGCGAGCA 60.125 61.111 0.00 0.00 0.00 4.26
1507 1515 1.022451 TTTCCGGTACATTGGCGAGC 61.022 55.000 0.00 0.00 0.00 5.03
1508 1516 1.006832 CTTTCCGGTACATTGGCGAG 58.993 55.000 0.00 0.00 0.00 5.03
1509 1517 1.022451 GCTTTCCGGTACATTGGCGA 61.022 55.000 0.00 0.00 0.00 5.54
1510 1518 1.427819 GCTTTCCGGTACATTGGCG 59.572 57.895 0.00 0.00 0.00 5.69
1511 1519 0.963355 TGGCTTTCCGGTACATTGGC 60.963 55.000 0.00 0.36 34.14 4.52
1512 1520 1.676006 GATGGCTTTCCGGTACATTGG 59.324 52.381 0.00 0.00 34.14 3.16
1513 1521 2.364632 TGATGGCTTTCCGGTACATTG 58.635 47.619 0.00 0.00 34.14 2.82
1514 1522 2.799126 TGATGGCTTTCCGGTACATT 57.201 45.000 0.00 0.00 34.14 2.71
1515 1523 2.487265 GGATGATGGCTTTCCGGTACAT 60.487 50.000 0.00 0.00 34.14 2.29
1516 1524 1.134220 GGATGATGGCTTTCCGGTACA 60.134 52.381 0.00 0.00 34.14 2.90
1517 1525 1.141053 AGGATGATGGCTTTCCGGTAC 59.859 52.381 0.00 0.00 34.61 3.34
1521 1529 1.139654 TCAGAGGATGATGGCTTTCCG 59.860 52.381 0.00 0.00 34.61 4.30
1533 1541 3.324268 ACATTCTGCGATCATCAGAGGAT 59.676 43.478 12.62 0.00 41.10 3.24
1535 1543 3.109044 ACATTCTGCGATCATCAGAGG 57.891 47.619 12.62 11.75 41.10 3.69
1536 1544 4.680567 CAGTACATTCTGCGATCATCAGAG 59.319 45.833 12.62 7.04 41.10 3.35
1538 1546 3.739810 CCAGTACATTCTGCGATCATCAG 59.260 47.826 0.00 5.80 34.47 2.90
1539 1547 3.132824 ACCAGTACATTCTGCGATCATCA 59.867 43.478 0.00 0.00 34.47 3.07
1540 1548 3.722147 ACCAGTACATTCTGCGATCATC 58.278 45.455 0.00 0.00 34.47 2.92
1542 1550 3.195610 AGAACCAGTACATTCTGCGATCA 59.804 43.478 6.33 0.00 33.86 2.92
1543 1551 3.786635 AGAACCAGTACATTCTGCGATC 58.213 45.455 6.33 0.00 33.86 3.69
1544 1552 3.895232 AGAACCAGTACATTCTGCGAT 57.105 42.857 6.33 0.00 33.86 4.58
1545 1553 3.006430 TGAAGAACCAGTACATTCTGCGA 59.994 43.478 7.56 0.00 33.68 5.10
1546 1554 3.325870 TGAAGAACCAGTACATTCTGCG 58.674 45.455 7.56 0.00 33.68 5.18
1547 1555 4.569943 TCTGAAGAACCAGTACATTCTGC 58.430 43.478 7.56 6.68 35.34 4.26
1548 1556 5.788450 ACTCTGAAGAACCAGTACATTCTG 58.212 41.667 7.56 0.00 35.34 3.02
1551 1559 6.350612 GCTCTACTCTGAAGAACCAGTACATT 60.351 42.308 0.00 0.00 35.71 2.71
1552 1560 5.126384 GCTCTACTCTGAAGAACCAGTACAT 59.874 44.000 0.00 0.00 35.71 2.29
1554 1562 4.703093 AGCTCTACTCTGAAGAACCAGTAC 59.297 45.833 0.00 0.00 35.71 2.73
1555 1563 4.924625 AGCTCTACTCTGAAGAACCAGTA 58.075 43.478 0.00 0.00 35.71 2.74
1556 1564 3.773560 AGCTCTACTCTGAAGAACCAGT 58.226 45.455 0.00 0.00 35.71 4.00
1557 1565 4.462483 AGAAGCTCTACTCTGAAGAACCAG 59.538 45.833 0.00 0.00 35.55 4.00
1560 1568 5.897377 AGAGAAGCTCTACTCTGAAGAAC 57.103 43.478 14.37 0.00 39.28 3.01
1571 1579 7.426606 TTGAGACTAGAGTAGAGAAGCTCTA 57.573 40.000 0.00 0.22 41.50 2.43
1574 1582 7.768807 TTTTTGAGACTAGAGTAGAGAAGCT 57.231 36.000 0.00 0.00 0.00 3.74
1596 1604 2.030274 GCACGCATACTGGGTTCTTTTT 60.030 45.455 0.00 0.00 40.90 1.94
1600 1608 0.253044 ATGCACGCATACTGGGTTCT 59.747 50.000 1.86 0.00 40.90 3.01
1601 1609 1.948104 TATGCACGCATACTGGGTTC 58.052 50.000 7.64 0.00 40.90 3.62
1610 1618 1.677576 CATTTCCTGGTATGCACGCAT 59.322 47.619 9.82 9.82 40.19 4.73
1611 1619 1.093972 CATTTCCTGGTATGCACGCA 58.906 50.000 0.00 0.00 0.00 5.24
1612 1620 0.248621 GCATTTCCTGGTATGCACGC 60.249 55.000 22.54 4.69 44.99 5.34
1613 1621 3.924238 GCATTTCCTGGTATGCACG 57.076 52.632 22.54 0.00 44.99 5.34
1640 1648 2.630580 AGCATTTCCTTACCCGCAAAAA 59.369 40.909 0.00 0.00 0.00 1.94
1642 1650 1.543802 CAGCATTTCCTTACCCGCAAA 59.456 47.619 0.00 0.00 0.00 3.68
1643 1651 1.173043 CAGCATTTCCTTACCCGCAA 58.827 50.000 0.00 0.00 0.00 4.85
1644 1652 0.326595 TCAGCATTTCCTTACCCGCA 59.673 50.000 0.00 0.00 0.00 5.69
1645 1653 1.680338 ATCAGCATTTCCTTACCCGC 58.320 50.000 0.00 0.00 0.00 6.13
1646 1654 3.016736 ACAATCAGCATTTCCTTACCCG 58.983 45.455 0.00 0.00 0.00 5.28
1647 1655 4.462483 TGAACAATCAGCATTTCCTTACCC 59.538 41.667 0.00 0.00 0.00 3.69
1648 1656 5.643379 TGAACAATCAGCATTTCCTTACC 57.357 39.130 0.00 0.00 0.00 2.85
1687 3468 7.639113 AGTGAAGAACCAAATGTAAGAAACA 57.361 32.000 0.00 0.00 43.86 2.83
1688 3469 8.188139 TGAAGTGAAGAACCAAATGTAAGAAAC 58.812 33.333 0.00 0.00 0.00 2.78
1701 3482 3.406764 AGCATGTCTGAAGTGAAGAACC 58.593 45.455 0.00 0.00 0.00 3.62
1705 3486 4.153835 GGAAGAAGCATGTCTGAAGTGAAG 59.846 45.833 0.00 0.00 0.00 3.02
1706 3487 4.067896 GGAAGAAGCATGTCTGAAGTGAA 58.932 43.478 0.00 0.00 0.00 3.18
1722 3566 5.630121 TCAAGAGTTTAAGGCATGGAAGAA 58.370 37.500 0.00 0.00 0.00 2.52
1723 3567 5.241403 TCAAGAGTTTAAGGCATGGAAGA 57.759 39.130 0.00 0.00 0.00 2.87
1724 3568 5.416952 ACATCAAGAGTTTAAGGCATGGAAG 59.583 40.000 0.00 0.00 0.00 3.46
1778 3622 7.426410 TCGTCCAGTAGCTATAGATGAAAAAG 58.574 38.462 3.21 0.00 0.00 2.27
1788 3632 4.022413 AGATGCTCGTCCAGTAGCTATA 57.978 45.455 0.00 0.00 39.53 1.31
1794 3638 2.152016 CCGATAGATGCTCGTCCAGTA 58.848 52.381 0.00 0.00 39.76 2.74
1798 3642 0.664767 GTGCCGATAGATGCTCGTCC 60.665 60.000 0.00 0.00 39.76 4.79
1801 3645 1.858091 AAAGTGCCGATAGATGCTCG 58.142 50.000 0.00 0.00 39.76 5.03
1857 3701 0.529992 CGGTTGCGGAGGATACCTTC 60.530 60.000 0.00 0.00 31.76 3.46
1864 3708 2.342279 CTTGTCGGTTGCGGAGGA 59.658 61.111 0.00 0.00 0.00 3.71
1941 3785 8.500773 CGCCTCAAAATAAGTGTCTTAACTTTA 58.499 33.333 0.00 0.00 40.77 1.85
1982 3826 5.703978 ACGGAATTGATTCATTTCACACA 57.296 34.783 18.17 0.00 38.53 3.72
1983 3827 8.184192 AGAATACGGAATTGATTCATTTCACAC 58.816 33.333 18.17 5.36 38.53 3.82
2001 3847 9.706691 AATATATTGTGTAGGTCAAGAATACGG 57.293 33.333 0.00 0.00 0.00 4.02
2030 3876 7.899648 TTATGGTGTAGGTCCTTTTCAAAAA 57.100 32.000 0.00 0.00 0.00 1.94
2031 3877 7.899648 TTTATGGTGTAGGTCCTTTTCAAAA 57.100 32.000 0.00 0.00 0.00 2.44
2032 3878 9.238368 CTATTTATGGTGTAGGTCCTTTTCAAA 57.762 33.333 0.00 0.00 0.00 2.69
2033 3879 8.387813 ACTATTTATGGTGTAGGTCCTTTTCAA 58.612 33.333 0.00 0.00 0.00 2.69
2034 3880 7.924541 ACTATTTATGGTGTAGGTCCTTTTCA 58.075 34.615 0.00 0.00 0.00 2.69
2035 3881 9.322773 GTACTATTTATGGTGTAGGTCCTTTTC 57.677 37.037 0.00 0.00 0.00 2.29
2036 3882 9.054580 AGTACTATTTATGGTGTAGGTCCTTTT 57.945 33.333 0.00 0.00 0.00 2.27
2037 3883 8.619683 AGTACTATTTATGGTGTAGGTCCTTT 57.380 34.615 0.00 0.00 0.00 3.11
2038 3884 7.289549 GGAGTACTATTTATGGTGTAGGTCCTT 59.710 40.741 0.00 0.00 0.00 3.36
2039 3885 6.781507 GGAGTACTATTTATGGTGTAGGTCCT 59.218 42.308 0.00 0.00 0.00 3.85
2040 3886 6.014755 GGGAGTACTATTTATGGTGTAGGTCC 60.015 46.154 0.00 0.00 0.00 4.46
2041 3887 6.294397 CGGGAGTACTATTTATGGTGTAGGTC 60.294 46.154 0.00 0.00 0.00 3.85
2042 3888 5.537674 CGGGAGTACTATTTATGGTGTAGGT 59.462 44.000 0.00 0.00 0.00 3.08
2043 3889 5.047519 CCGGGAGTACTATTTATGGTGTAGG 60.048 48.000 0.00 0.00 0.00 3.18
2044 3890 5.771666 TCCGGGAGTACTATTTATGGTGTAG 59.228 44.000 0.00 0.00 0.00 2.74
2045 3891 5.536161 GTCCGGGAGTACTATTTATGGTGTA 59.464 44.000 0.00 0.00 0.00 2.90
2046 3892 4.343239 GTCCGGGAGTACTATTTATGGTGT 59.657 45.833 0.00 0.00 0.00 4.16
2047 3893 4.587684 AGTCCGGGAGTACTATTTATGGTG 59.412 45.833 1.54 0.00 0.00 4.17
2048 3894 4.812653 AGTCCGGGAGTACTATTTATGGT 58.187 43.478 1.54 0.00 0.00 3.55
2049 3895 4.831155 TGAGTCCGGGAGTACTATTTATGG 59.169 45.833 3.88 0.00 0.00 2.74
2050 3896 6.591750 ATGAGTCCGGGAGTACTATTTATG 57.408 41.667 3.88 0.00 0.00 1.90
2051 3897 7.070821 ACAAATGAGTCCGGGAGTACTATTTAT 59.929 37.037 3.88 0.00 0.00 1.40
2052 3898 6.381994 ACAAATGAGTCCGGGAGTACTATTTA 59.618 38.462 3.88 0.00 0.00 1.40
2053 3899 5.189145 ACAAATGAGTCCGGGAGTACTATTT 59.811 40.000 3.88 9.30 0.00 1.40
2063 3909 0.240945 GCAACACAAATGAGTCCGGG 59.759 55.000 0.00 0.00 0.00 5.73
2099 3946 6.509656 AGTCGTTGAAGAAGTAATGTACACA 58.490 36.000 0.00 0.00 0.00 3.72
2120 3967 3.620488 TGTTGCTATGGATGGGAAAGTC 58.380 45.455 0.00 0.00 0.00 3.01
2197 4044 2.767960 TCATGCTAAGATGTGAGGCTGA 59.232 45.455 0.00 0.00 0.00 4.26
2245 4092 9.903185 GCTCTTTGTAACTAATCGTCTATTTTC 57.097 33.333 0.00 0.00 0.00 2.29
2309 4157 4.935352 TTCTGAAACATTTTCACCAGGG 57.065 40.909 0.00 0.00 0.00 4.45
2321 4181 3.820467 ACGATGCCTTTCATTCTGAAACA 59.180 39.130 0.00 0.00 41.02 2.83
2326 4186 4.571984 TGTATCACGATGCCTTTCATTCTG 59.428 41.667 0.00 0.00 35.05 3.02
2343 4203 7.013274 TCTCGTTCTCACATGTATCATGTATCA 59.987 37.037 13.76 2.77 0.00 2.15
2348 4208 5.825507 TCTCTCGTTCTCACATGTATCATG 58.174 41.667 0.00 7.99 0.00 3.07
2363 4223 0.605589 CTTCAGCCCACTCTCTCGTT 59.394 55.000 0.00 0.00 0.00 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.