AutoCloner

Multiple sequence alignment - TraesCS5B01G529000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS5B01G529000	chr5B	100.000	3748	0	0	1	3748	687740939	687737192	0.000000e+00	6922.0
1	TraesCS5B01G529000	chr5B	80.159	882	133	29	1510	2365	687745935	687746800	4.110000e-174	621.0
2	TraesCS5B01G529000	chr5B	79.210	481	63	25	717	1170	687745111	687745581	2.190000e-77	300.0
3	TraesCS5B01G529000	chr5D	92.278	1826	96	22	1171	2984	545124539	545122747	0.000000e+00	2549.0
4	TraesCS5B01G529000	chr5D	93.792	1192	54	7	3	1176	545125763	545124574	0.000000e+00	1773.0
5	TraesCS5B01G529000	chr5D	91.452	737	54	7	2972	3703	545121369	545120637	0.000000e+00	1003.0
6	TraesCS5B01G529000	chr5D	80.161	867	138	23	1510	2365	545145969	545146812	5.320000e-173	617.0
7	TraesCS5B01G529000	chr5D	79.352	494	65	30	701	1170	545145135	545145615	2.810000e-81	313.0
8	TraesCS5B01G529000	chr5D	88.148	135	16	0	2509	2643	545119442	545119308	1.080000e-35	161.0
9	TraesCS5B01G529000	chr1A	93.222	1313	65	7	1747	3053	570160212	570161506	0.000000e+00	1910.0
10	TraesCS5B01G529000	chr1A	94.337	883	41	4	865	1738	570159233	570160115	0.000000e+00	1345.0
11	TraesCS5B01G529000	chr1A	79.606	863	141	26	1516	2365	570155025	570154185	1.500000e-163	586.0
12	TraesCS5B01G529000	chr1A	88.938	452	32	8	3299	3748	570161504	570161939	3.290000e-150	542.0
13	TraesCS5B01G529000	chr1A	77.514	716	97	44	717	1384	570155828	570155129	4.570000e-99	372.0
14	TraesCS5B01G529000	chr1A	82.051	273	43	6	2448	2717	569193348	569193617	1.050000e-55	228.0
15	TraesCS5B01G529000	chr1A	81.618	272	46	4	2448	2717	570182044	570182313	4.870000e-54	222.0
16	TraesCS5B01G529000	chr1A	77.778	225	33	11	294	502	570158177	570158400	5.080000e-24	122.0
17	TraesCS5B01G529000	chr1A	74.497	149	32	4	1817	1959	497084019	497084167	4.040000e-05	60.2
18	TraesCS5B01G529000	chr1A	92.683	41	3	0	262	302	570158127	570158167	4.040000e-05	60.2
19	TraesCS5B01G529000	chr4A	91.747	1248	82	11	2511	3748	624920086	624918850	0.000000e+00	1714.0
20	TraesCS5B01G529000	chr4A	93.798	903	39	6	865	1750	624921787	624920885	0.000000e+00	1341.0
21	TraesCS5B01G529000	chr4A	94.490	726	33	2	1747	2471	624920805	624920086	0.000000e+00	1112.0
22	TraesCS5B01G529000	chr4A	76.295	637	91	42	717	1309	624925193	624925813	6.130000e-73	285.0
23	TraesCS5B01G529000	chr4A	78.155	412	70	17	2448	2856	624874798	624874404	1.040000e-60	244.0
24	TraesCS5B01G529000	chr4A	81.985	272	45	4	2448	2717	624898721	624898452	1.050000e-55	228.0
25	TraesCS5B01G529000	chr4A	78.599	257	38	11	262	502	624922887	624922632	1.800000e-33	154.0
26	TraesCS5B01G529000	chr2D	78.035	519	91	16	1198	1711	110908879	110909379	4.700000e-79	305.0
27	TraesCS5B01G529000	chr2B	90.476	189	18	0	1196	1384	160281051	160281239	2.240000e-62	250.0
28	TraesCS5B01G529000	chr2A	87.701	187	23	0	1198	1384	107316622	107316808	6.300000e-53	219.0
29	TraesCS5B01G529000	chr7A	77.333	150	26	4	1817	1959	130400005	130399857	8.630000e-12	82.4
30	TraesCS5B01G529000	chr7D	75.839	149	30	4	1817	1959	131651561	131651413	1.870000e-08	71.3
31	TraesCS5B01G529000	chr7B	75.333	150	29	5	1817	1959	93067261	93067113	8.690000e-07	65.8
32	TraesCS5B01G529000	chr7B	100.000	28	0	0	2422	2449	639280794	639280767	7.000000e-03	52.8
33	TraesCS5B01G529000	chr6B	100.000	28	0	0	2422	2449	10454186	10454213	7.000000e-03	52.8
34	TraesCS5B01G529000	chr6B	100.000	28	0	0	2422	2449	10519627	10519654	7.000000e-03	52.8

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS5B01G529000	chr5B	687737192	687740939	3747	True	6922.00	6922	100.0000	1	3748	1	chr5B.!!$R1	3747
1	TraesCS5B01G529000	chr5B	687745111	687746800	1689	False	460.50	621	79.6845	717	2365	2	chr5B.!!$F1	1648
2	TraesCS5B01G529000	chr5D	545119308	545125763	6455	True	1371.50	2549	91.4175	3	3703	4	chr5D.!!$R1	3700
3	TraesCS5B01G529000	chr5D	545145135	545146812	1677	False	465.00	617	79.7565	701	2365	2	chr5D.!!$F1	1664
4	TraesCS5B01G529000	chr1A	570158127	570161939	3812	False	795.84	1910	89.3916	262	3748	5	chr1A.!!$F4	3486
5	TraesCS5B01G529000	chr1A	570154185	570155828	1643	True	479.00	586	78.5600	717	2365	2	chr1A.!!$R1	1648
6	TraesCS5B01G529000	chr4A	624918850	624922887	4037	True	1080.25	1714	89.6585	262	3748	4	chr4A.!!$R3	3486
7	TraesCS5B01G529000	chr4A	624925193	624925813	620	False	285.00	285	76.2950	717	1309	1	chr4A.!!$F1	592
8	TraesCS5B01G529000	chr2D	110908879	110909379	500	False	305.00	305	78.0350	1198	1711	1	chr2D.!!$F1	513

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
845	971	0.107945	CCTGCACTTGAGGGAGCTAC	60.108	60.0	0.0	0.0	0.00	3.58	F
1815	2563	0.183492	AGTTGAAGAACCAGCCAGCA	59.817	50.0	0.0	0.0	31.81	4.41	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1993	2741	0.606401	CCTGCCAGACGACCAATTGT	60.606	55.0	4.43	0.0	0.00	2.71	R
3383	5559	0.184451	ATCCGGCCTCTGCATCATTT	59.816	50.0	0.00	0.0	40.13	2.32	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
22	23	2.533266	ATACATCGTGATGGAGGTGC	57.467	50.000	13.95	0.00	42.91	5.01
23	24	1.190643	TACATCGTGATGGAGGTGCA	58.809	50.000	13.95	0.00	42.91	4.57
28	29	1.304282	GTGATGGAGGTGCACCCAT	59.696	57.895	32.29	27.07	45.22	4.00
68	69	2.163010	CACATCCATTTGTCCTGCACTC	59.837	50.000	0.00	0.00	0.00	3.51
80	81	2.032620	CCTGCACTCGAGGGTTACTAT	58.967	52.381	17.64	0.00	0.00	2.12
91	92	3.089284	AGGGTTACTATGCTGCAAAACC	58.911	45.455	21.50	21.50	36.48	3.27
187	188	3.057736	CAGAGTTCACCAATGAGGCAAAG	60.058	47.826	0.00	0.00	43.14	2.77
189	190	1.273327	GTTCACCAATGAGGCAAAGGG	59.727	52.381	0.00	0.00	43.14	3.95
194	195	1.001181	CCAATGAGGCAAAGGGTTGTG	59.999	52.381	0.00	0.00	37.06	3.33
221	222	2.435805	GGTCTGCACATCCCTCTGATAA	59.564	50.000	0.00	0.00	30.56	1.75
257	260	2.171448	ACATGTATCCAGGGCTTGACTC	59.829	50.000	0.00	0.00	0.00	3.36
435	474	4.168760	CGCCCATGTTTCTTCTCAAAATC	58.831	43.478	0.00	0.00	0.00	2.17
534	644	8.593945	TGAGCAACCAAATCCTATTCTAAAAT	57.406	30.769	0.00	0.00	0.00	1.82
548	658	7.917505	CCTATTCTAAAATGAAACTCATGCACC	59.082	37.037	0.00	0.00	37.15	5.01
587	697	9.396022	TGAAGAAAGGAATTATTATGTGACTCC	57.604	33.333	0.00	0.00	0.00	3.85
672	782	9.988350	AAACGCACAACTATAAGAATTGATTAG	57.012	29.630	0.00	0.00	0.00	1.73
691	801	5.618616	TTAGGTTAAAAAGGATTGGGGGA	57.381	39.130	0.00	0.00	0.00	4.81
809	935	5.441500	TGTGTTCTGTCCCTTTTTATGTCA	58.558	37.500	0.00	0.00	0.00	3.58
812	938	6.262273	GTGTTCTGTCCCTTTTTATGTCAGAA	59.738	38.462	0.00	0.00	37.86	3.02
843	969	3.076092	CCTGCACTTGAGGGAGCT	58.924	61.111	0.00	0.00	0.00	4.09
845	971	0.107945	CCTGCACTTGAGGGAGCTAC	60.108	60.000	0.00	0.00	0.00	3.58
848	974	1.699634	TGCACTTGAGGGAGCTACTTT	59.300	47.619	0.00	0.00	0.00	2.66
1037	1608	1.290324	CAGGAGGTGACACGGTGAG	59.710	63.158	16.29	0.00	0.00	3.51
1221	1848	1.863155	AAACTGGATGGGCCGGATGT	61.863	55.000	5.05	0.00	46.81	3.06
1228	1855	1.073923	GATGGGCCGGATGTTAGGATT	59.926	52.381	5.05	0.00	0.00	3.01
1394	2021	2.805671	CCACAGAAGTACGCATGAAACA	59.194	45.455	0.00	0.00	0.00	2.83
1396	2023	4.083324	CCACAGAAGTACGCATGAAACAAT	60.083	41.667	0.00	0.00	0.00	2.71
1678	2316	1.367840	GCCTTCGATATCGCCCACT	59.632	57.895	20.34	0.00	39.60	4.00
1725	2376	2.106338	CCAGGTACCCATGTGATGCATA	59.894	50.000	8.74	0.00	35.74	3.14
1740	2391	5.409520	GTGATGCATACATGGTATGGTACTG	59.590	44.000	15.81	0.00	36.35	2.74
1743	2394	3.244561	GCATACATGGTATGGTACTGCCT	60.245	47.826	15.81	0.00	38.35	4.75
1744	2395	4.020573	GCATACATGGTATGGTACTGCCTA	60.021	45.833	15.81	0.00	38.35	3.93
1745	2396	5.338381	GCATACATGGTATGGTACTGCCTAT	60.338	44.000	15.81	0.00	38.35	2.57
1746	2397	4.623932	ACATGGTATGGTACTGCCTATG	57.376	45.455	0.00	0.00	38.35	2.23
1768	2513	9.378551	CTATGTACCTAGTAACAAGCAATCAAA	57.621	33.333	0.00	0.00	0.00	2.69
1815	2563	0.183492	AGTTGAAGAACCAGCCAGCA	59.817	50.000	0.00	0.00	31.81	4.41
1848	2596	1.592669	GTCAGACATCGCCATCGGG	60.593	63.158	0.00	0.00	36.13	5.14
1938	2686	0.246635	CCTTCAACCTCATCGACGGT	59.753	55.000	0.00	0.00	34.27	4.83
1986	2734	5.766222	ACTACTTAAGTTCACCAGTACACG	58.234	41.667	14.49	0.00	33.35	4.49
1993	2741	0.747852	TCACCAGTACACGCAACTCA	59.252	50.000	0.00	0.00	0.00	3.41
2046	2805	4.274950	TCGATATCTCACGTGCATGACTAA	59.725	41.667	14.17	0.00	0.00	2.24
2059	2818	6.142958	CGTGCATGACTAATGTAGACACTATG	59.857	42.308	0.00	0.00	38.65	2.23
2060	2819	5.985530	TGCATGACTAATGTAGACACTATGC	59.014	40.000	0.00	0.00	38.65	3.14
2261	3022	2.470983	TCCTCGACATGTTCAATGCA	57.529	45.000	0.00	0.00	0.00	3.96
2294	3055	0.039764	TGGTCGACATCCACCTCTCT	59.960	55.000	18.91	0.00	33.36	3.10
2375	3137	6.932960	CCGACCTACCTATTATACCCAAAAAG	59.067	42.308	0.00	0.00	0.00	2.27
2411	3173	5.702065	TGAGTGGCCTATTGTGGTAATTA	57.298	39.130	3.32	0.00	0.00	1.40
2471	3234	6.236017	ACACAACAATTATCTGTTACGGTG	57.764	37.500	0.00	0.00	37.43	4.94
2597	3360	1.275666	TTGGGAATGAGCTTCTCGGA	58.724	50.000	0.00	0.00	37.13	4.55
2651	3414	1.129058	GGAATGTGGAGGTACCCGAT	58.871	55.000	8.74	0.00	38.00	4.18
2761	3525	6.430451	CACAGACCTAGTGTGTTTCATTTTC	58.570	40.000	4.25	0.00	37.96	2.29
2765	3529	6.828785	AGACCTAGTGTGTTTCATTTTCTGTT	59.171	34.615	0.00	0.00	0.00	3.16
2798	3570	6.452242	CATGTATATGCATGCATGTTTTCCT	58.548	36.000	37.43	16.54	45.22	3.36
2810	3582	9.976255	CATGCATGTTTTCCTTTATGTTTTATG	57.024	29.630	18.91	0.00	0.00	1.90
2902	3674	4.909696	TGAAGGTGTTGTTATGTGGTTG	57.090	40.909	0.00	0.00	0.00	3.77
2908	3680	5.652014	AGGTGTTGTTATGTGGTTGATATGG	59.348	40.000	0.00	0.00	0.00	2.74
2940	3712	7.148154	TGGAATTATTATTGCTACTGCGTTTGT	60.148	33.333	0.00	0.00	43.34	2.83
3150	5323	5.318630	GAGGGAGGGAGTATAGTCTTGTAG	58.681	50.000	7.50	0.00	0.00	2.74
3159	5332	7.229907	GGGAGTATAGTCTTGTAGAAGGAAGAG	59.770	44.444	7.50	0.00	0.00	2.85
3178	5351	6.183360	GGAAGAGTTAAGGTGTTGATATGTGC	60.183	42.308	0.00	0.00	0.00	4.57
3224	5399	9.463902	GGAGCTACTATATCACTACCAGATTTA	57.536	37.037	0.00	0.00	0.00	1.40
3304	5479	7.461918	AGTAATCCTTATTCGAAGCGTTTTTC	58.538	34.615	3.35	0.00	0.00	2.29
3326	5502	5.610398	TCGAATGAGCAAAGCCTTATCATA	58.390	37.500	1.53	0.00	30.65	2.15
3349	5525	5.051816	ACTGACAAATGTTTCATTGCCTTG	58.948	37.500	0.00	0.00	0.00	3.61
3485	5665	1.156736	GGCATAGTCGTGCACTTTGT	58.843	50.000	16.19	0.00	46.81	2.83
3489	5669	2.831685	TAGTCGTGCACTTTGTCCAT	57.168	45.000	16.19	0.00	36.43	3.41
3490	5670	2.831685	AGTCGTGCACTTTGTCCATA	57.168	45.000	16.19	0.00	26.56	2.74
3563	5743	1.549203	CCACAAGAAACCTCCATGGG	58.451	55.000	13.02	2.26	41.11	4.00
3578	5758	2.961062	CCATGGGTCCATCATCCTTTTC	59.039	50.000	2.85	0.00	33.90	2.29
3626	5808	8.210946	CAGATATCAGGTTTGTCCCTTGTATTA	58.789	37.037	5.32	0.00	36.75	0.98
3640	5822	5.048991	CCCTTGTATTAGTTTGACTTGCGTT	60.049	40.000	0.00	0.00	0.00	4.84
3703	5886	1.578897	TATTCCAGCTGTACAGGCCA	58.421	50.000	23.95	0.00	0.00	5.36
3707	5890	1.301716	CAGCTGTACAGGCCACGTT	60.302	57.895	23.95	0.00	0.00	3.99
3708	5891	0.037697	CAGCTGTACAGGCCACGTTA	60.038	55.000	23.95	0.00	0.00	3.18

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
0	1	4.040339	TGCACCTCCATCACGATGTATAAT	59.960	41.667	6.30	0.00	37.11	1.28
1	2	3.386402	TGCACCTCCATCACGATGTATAA	59.614	43.478	6.30	0.00	37.11	0.98
10	11	0.323725	AATGGGTGCACCTCCATCAC	60.324	55.000	33.91	16.73	42.43	3.06
47	48	2.163010	GAGTGCAGGACAAATGGATGTG	59.837	50.000	0.00	0.00	32.57	3.21
48	49	2.440409	GAGTGCAGGACAAATGGATGT	58.560	47.619	0.00	0.00	35.90	3.06
68	69	2.309528	TTGCAGCATAGTAACCCTCG	57.690	50.000	0.00	0.00	0.00	4.63
80	81	0.746063	CAGGAGTTGGTTTTGCAGCA	59.254	50.000	0.00	0.00	0.00	4.41
187	188	1.959085	CAGACCATGTGCACAACCC	59.041	57.895	25.72	13.14	0.00	4.11
189	190	2.032170	TGCAGACCATGTGCACAAC	58.968	52.632	25.72	15.07	45.96	3.32
194	195	1.660560	GGGATGTGCAGACCATGTGC	61.661	60.000	0.00	0.00	41.59	4.57
257	260	1.281656	GGACAAGAAACCAACGCCG	59.718	57.895	0.00	0.00	0.00	6.46
480	521	8.408601	GGATGCATACACAAGTATTTCAATCTT	58.591	33.333	3.28	0.00	38.88	2.40
534	644	1.955778	CTTGTGGGTGCATGAGTTTCA	59.044	47.619	0.00	0.00	0.00	2.69
548	658	5.063204	TCCTTTCTTCACATGTACTTGTGG	58.937	41.667	30.62	20.43	45.63	4.17
672	782	4.023980	CTCTCCCCCAATCCTTTTTAACC	58.976	47.826	0.00	0.00	0.00	2.85
691	801	4.116113	TCTACCCCTCTCTCTTTCTCTCT	58.884	47.826	0.00	0.00	0.00	3.10
741	851	1.373435	CCACCCGTTCCTTGTGCTA	59.627	57.895	0.00	0.00	0.00	3.49
754	864	7.847848	TCCTAATATTATAGTATGACCCCACCC	59.152	40.741	0.00	0.00	0.00	4.61
755	865	8.849543	TCCTAATATTATAGTATGACCCCACC	57.150	38.462	0.00	0.00	0.00	4.61
809	935	3.577848	TGCAGGGTGTAATTGCAAATTCT	59.422	39.130	1.71	0.00	44.13	2.40
1037	1608	1.555075	TCAGGATGGTCACCAGCTTAC	59.445	52.381	12.91	0.00	40.16	2.34
1125	1696	9.793252	GAACATACGTAAAAGTATCTTACCTGA	57.207	33.333	0.00	0.00	35.32	3.86
1221	1848	4.365723	GTCGAAGTAATCCGCAATCCTAA	58.634	43.478	0.00	0.00	0.00	2.69
1228	1855	0.457166	CCACGTCGAAGTAATCCGCA	60.457	55.000	3.00	0.00	0.00	5.69
1394	2021	9.293404	ACATATGAATGCATGCTTAGTTAGATT	57.707	29.630	20.33	7.29	36.50	2.40
1396	2023	9.948964	ATACATATGAATGCATGCTTAGTTAGA	57.051	29.630	20.33	0.00	36.50	2.10
1678	2316	1.547675	GGAGAAGATGGTGGGTTGCAA	60.548	52.381	0.00	0.00	0.00	4.08
1725	2376	3.973973	ACATAGGCAGTACCATACCATGT	59.026	43.478	0.00	0.00	43.14	3.21
1740	2391	5.272283	TGCTTGTTACTAGGTACATAGGC	57.728	43.478	18.13	10.96	0.00	3.93
1743	2394	9.899661	ATTTGATTGCTTGTTACTAGGTACATA	57.100	29.630	0.00	0.00	0.00	2.29
1744	2395	8.807948	ATTTGATTGCTTGTTACTAGGTACAT	57.192	30.769	0.00	0.00	0.00	2.29
1745	2396	9.727859	TTATTTGATTGCTTGTTACTAGGTACA	57.272	29.630	0.00	0.00	0.00	2.90
1768	2513	8.062065	TCAATCATGCATGCACATATGATTAT	57.938	30.769	31.70	18.21	44.20	1.28
1815	2563	0.946221	CTGACAGGAGCGCGTTCTTT	60.946	55.000	22.36	8.68	0.00	2.52
1986	2734	1.873591	AGACGACCAATTGTGAGTTGC	59.126	47.619	4.43	0.00	0.00	4.17
1993	2741	0.606401	CCTGCCAGACGACCAATTGT	60.606	55.000	4.43	0.00	0.00	2.71
2046	2805	2.293399	TCATCGCGCATAGTGTCTACAT	59.707	45.455	8.75	0.00	0.00	2.29
2059	2818	3.945434	CCACATGGCTCATCGCGC	61.945	66.667	0.00	0.00	40.44	6.86
2261	3022	3.432051	GACCATGTCGCCGCTAGCT	62.432	63.158	13.93	0.00	40.39	3.32
2352	3113	8.037723	TCCTTTTTGGGTATAATAGGTAGGTC	57.962	38.462	0.00	0.00	36.20	3.85
2375	3137	4.220602	AGGCCACTCATTGTTATGTTTTCC	59.779	41.667	5.01	0.00	33.34	3.13
2411	3173	1.559965	GGCCGGGGGTACTCTCTTTT	61.560	60.000	2.18	0.00	0.00	2.27
2464	3227	7.040340	ACAACAACCATTCATTAATCACCGTAA	60.040	33.333	0.00	0.00	0.00	3.18
2495	3258	5.163683	GCTCAGTTGATCATACTGCATTTGT	60.164	40.000	22.67	0.00	42.12	2.83
2597	3360	3.519913	GGTCCACCTGAGATACCTTCTTT	59.480	47.826	0.00	0.00	33.74	2.52
2651	3414	2.601067	TCCGCGTTGGTACCCTCA	60.601	61.111	10.07	0.00	39.52	3.86
2761	3525	5.320607	CATATACATGCACAGACGAACAG	57.679	43.478	0.00	0.00	0.00	3.16
2902	3674	9.472361	GCAATAATAATTCCATGCATCCATATC	57.528	33.333	0.00	0.00	34.10	1.63
2908	3680	7.487189	GCAGTAGCAATAATAATTCCATGCATC	59.513	37.037	0.00	0.00	41.58	3.91
3106	5279	9.463902	TCCCTCCGTTTCAAAATATAATGTTAA	57.536	29.630	0.00	0.00	0.00	2.01
3150	5323	7.824779	ACATATCAACACCTTAACTCTTCCTTC	59.175	37.037	0.00	0.00	0.00	3.46
3304	5479	4.825546	ATGATAAGGCTTTGCTCATTCG	57.174	40.909	4.45	0.00	0.00	3.34
3326	5502	4.942761	AGGCAATGAAACATTTGTCAGT	57.057	36.364	0.00	0.00	29.89	3.41
3378	5554	2.880268	CGGCCTCTGCATCATTTTGATA	59.120	45.455	0.00	0.00	34.28	2.15
3383	5559	0.184451	ATCCGGCCTCTGCATCATTT	59.816	50.000	0.00	0.00	40.13	2.32
3438	5618	9.649167	CTGCAAGATATTTTTCAGGATTTTTCT	57.351	29.630	0.00	0.00	34.07	2.52
3514	5694	4.058817	ACGTGACAATGAGAAGTTCCTTC	58.941	43.478	0.00	0.00	40.45	3.46
3604	5786	7.504926	ACTAATACAAGGGACAAACCTGATA	57.495	36.000	0.00	0.00	40.87	2.15
3640	5822	1.687146	CAGGTGCCCCTAGCTCTGA	60.687	63.158	0.00	0.00	42.26	3.27
3703	5886	5.977725	CACGTATTGATGATTCCTCTAACGT	59.022	40.000	0.00	9.35	40.10	3.99
3707	5890	5.791336	AGCACGTATTGATGATTCCTCTA	57.209	39.130	0.00	0.00	0.00	2.43
3708	5891	4.679373	AGCACGTATTGATGATTCCTCT	57.321	40.909	0.00	0.00	0.00	3.69

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.