AutoCloner

Multiple sequence alignment - TraesCS5B01G528600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS5B01G528600	chr5B	100.000	2525	0	0	1	2525	687259150	687261674	0.000000e+00	4663.0
1	TraesCS5B01G528600	chr5B	89.615	1868	105	25	68	1876	687325566	687327403	0.000000e+00	2292.0
2	TraesCS5B01G528600	chr5B	87.769	744	77	8	858	1588	687223955	687224697	0.000000e+00	857.0
3	TraesCS5B01G528600	chr5B	92.973	555	29	6	168	712	687342055	687342609	0.000000e+00	800.0
4	TraesCS5B01G528600	chr5B	90.909	495	28	8	1876	2358	687330628	687331117	0.000000e+00	649.0
5	TraesCS5B01G528600	chr5B	86.116	533	42	15	111	618	687223369	687223894	1.710000e-151	545.0
6	TraesCS5B01G528600	chr5B	79.281	584	82	19	1954	2525	687402394	687402950	3.070000e-99	372.0
7	TraesCS5B01G528600	chr5B	94.180	189	10	1	1	188	687340140	687340328	1.140000e-73	287.0
8	TraesCS5B01G528600	chr5B	91.053	190	10	1	1	183	687325128	687325317	1.500000e-62	250.0
9	TraesCS5B01G528600	chr5B	84.810	158	16	3	2376	2525	687331259	687331416	4.350000e-33	152.0
10	TraesCS5B01G528600	chr5B	95.890	73	3	0	2	74	241165130	241165058	4.410000e-23	119.0
11	TraesCS5B01G528600	chr5B	93.421	76	5	0	2450	2525	687215886	687215961	2.050000e-21	113.0
12	TraesCS5B01G528600	chr5B	96.667	60	2	0	2466	2525	13364697	13364638	1.600000e-17	100.0
13	TraesCS5B01G528600	chr5B	92.647	68	5	0	2458	2525	13350052	13350119	5.750000e-17	99.0
14	TraesCS5B01G528600	chr5B	90.164	61	6	0	1817	1877	687388473	687388533	2.080000e-11	80.5
15	TraesCS5B01G528600	chr5D	87.597	1935	128	42	71	1926	544816425	544818326	0.000000e+00	2141.0
16	TraesCS5B01G528600	chr5D	88.300	812	77	8	852	1648	544799316	544800124	0.000000e+00	957.0
17	TraesCS5B01G528600	chr5D	84.843	574	47	17	112	658	544798729	544799289	2.210000e-150	542.0
18	TraesCS5B01G528600	chr5D	84.433	591	47	16	1953	2525	544824240	544824803	7.950000e-150	540.0
19	TraesCS5B01G528600	chr5D	97.183	71	2	0	6	76	231356340	231356270	1.230000e-23	121.0
20	TraesCS5B01G528600	chr5D	96.667	60	2	0	2466	2525	13999753	13999694	1.600000e-17	100.0
21	TraesCS5B01G528600	chr5D	90.411	73	6	1	2453	2525	544801874	544801945	7.440000e-16	95.3
22	TraesCS5B01G528600	chr4A	86.385	1939	145	48	68	1926	624746446	624748345	0.000000e+00	2008.0
23	TraesCS5B01G528600	chr4A	87.548	787	78	12	840	1614	26324039	26323261	0.000000e+00	893.0
24	TraesCS5B01G528600	chr4A	86.104	806	91	10	862	1648	624733493	624734296	0.000000e+00	848.0
25	TraesCS5B01G528600	chr4A	86.496	585	52	16	1953	2525	624748831	624749400	3.570000e-173	617.0
26	TraesCS5B01G528600	chr4A	87.406	532	31	16	112	621	624732905	624733422	1.680000e-161	579.0
27	TraesCS5B01G528600	chr4A	79.412	306	25	15	343	621	24919618	24919324	5.550000e-42	182.0
28	TraesCS5B01G528600	chr1A	86.768	1776	126	41	231	1929	569356262	569354519	0.000000e+00	1877.0
29	TraesCS5B01G528600	chr1A	85.856	806	93	10	862	1648	569377107	569376304	0.000000e+00	837.0
30	TraesCS5B01G528600	chr1A	87.617	533	29	17	112	621	569377696	569377178	3.620000e-163	584.0
31	TraesCS5B01G528600	chr4D	80.650	615	75	25	83	679	441255494	441256082	1.070000e-118	436.0
32	TraesCS5B01G528600	chr4D	76.697	545	56	33	134	647	442395736	442396240	1.170000e-58	237.0
33	TraesCS5B01G528600	chr4B	80.606	330	28	17	343	646	550502654	550502973	3.270000e-54	222.0
34	TraesCS5B01G528600	chr3D	75.893	336	63	13	938	1258	157540534	157540202	3.360000e-34	156.0
35	TraesCS5B01G528600	chr3A	97.183	71	1	1	3	72	429318179	429318109	4.410000e-23	119.0
36	TraesCS5B01G528600	chr1B	94.737	76	4	0	1	76	453136545	453136470	4.410000e-23	119.0
37	TraesCS5B01G528600	chr6B	94.737	76	3	1	2	76	231315758	231315833	1.590000e-22	117.0
38	TraesCS5B01G528600	chr7A	92.500	80	5	1	1	79	581850976	581850897	2.050000e-21	113.0
39	TraesCS5B01G528600	chr7A	90.698	86	5	3	2	87	332924579	332924661	7.380000e-21	111.0
40	TraesCS5B01G528600	chr5A	91.176	68	6	0	2458	2525	10954132	10954199	2.670000e-15	93.5

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS5B01G528600	chr5B	687259150	687261674	2524	False	4663.000000	4663	100.000000	1	2525	1	chr5B.!!$F3	2524
1	TraesCS5B01G528600	chr5B	687325128	687331416	6288	False	835.750000	2292	89.096750	1	2525	4	chr5B.!!$F7	2524
2	TraesCS5B01G528600	chr5B	687223369	687224697	1328	False	701.000000	857	86.942500	111	1588	2	chr5B.!!$F6	1477
3	TraesCS5B01G528600	chr5B	687340140	687342609	2469	False	543.500000	800	93.576500	1	712	2	chr5B.!!$F8	711
4	TraesCS5B01G528600	chr5B	687402394	687402950	556	False	372.000000	372	79.281000	1954	2525	1	chr5B.!!$F5	571
5	TraesCS5B01G528600	chr5D	544816425	544818326	1901	False	2141.000000	2141	87.597000	71	1926	1	chr5D.!!$F1	1855
6	TraesCS5B01G528600	chr5D	544824240	544824803	563	False	540.000000	540	84.433000	1953	2525	1	chr5D.!!$F2	572
7	TraesCS5B01G528600	chr5D	544798729	544801945	3216	False	531.433333	957	87.851333	112	2525	3	chr5D.!!$F3	2413
8	TraesCS5B01G528600	chr4A	624746446	624749400	2954	False	1312.500000	2008	86.440500	68	2525	2	chr4A.!!$F2	2457
9	TraesCS5B01G528600	chr4A	26323261	26324039	778	True	893.000000	893	87.548000	840	1614	1	chr4A.!!$R2	774
10	TraesCS5B01G528600	chr4A	624732905	624734296	1391	False	713.500000	848	86.755000	112	1648	2	chr4A.!!$F1	1536
11	TraesCS5B01G528600	chr1A	569354519	569356262	1743	True	1877.000000	1877	86.768000	231	1929	1	chr1A.!!$R1	1698
12	TraesCS5B01G528600	chr1A	569376304	569377696	1392	True	710.500000	837	86.736500	112	1648	2	chr1A.!!$R2	1536
13	TraesCS5B01G528600	chr4D	441255494	441256082	588	False	436.000000	436	80.650000	83	679	1	chr4D.!!$F1	596
14	TraesCS5B01G528600	chr4D	442395736	442396240	504	False	237.000000	237	76.697000	134	647	1	chr4D.!!$F2	513

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
268	2393	0.320334	CATGTGCACCTACACGACCA	60.32	55.0	15.69	0.0	43.74	4.02	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1634	3915	0.17668	CCCCTGACTCGATGGACAAG	59.823	60.0	0.0	0.0	0.0	3.16	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
98	110	1.907739	GCACCAGCCATAGACCTGA	59.092	57.895	0.00	0.00	33.58	3.86
122	499	8.206867	TGATAGACTAATCCTTGGAAGAATGTG	58.793	37.037	0.00	0.00	0.00	3.21
126	503	7.391833	AGACTAATCCTTGGAAGAATGTGAAAC	59.608	37.037	0.00	0.00	37.35	2.78
222	2347	3.535561	CTGCGTTGGATGATTAGAAGGT	58.464	45.455	0.00	0.00	0.00	3.50
268	2393	0.320334	CATGTGCACCTACACGACCA	60.320	55.000	15.69	0.00	43.74	4.02
464	2674	0.467384	AGCCCAACCATCTGATCTCG	59.533	55.000	0.00	0.00	0.00	4.04
621	2837	3.609853	GATCTGACACAATGGGTAAGCA	58.390	45.455	0.00	0.00	0.00	3.91
762	3012	5.563280	CGGTAAAATTATGAAATACCCGGCC	60.563	44.000	0.00	0.00	0.00	6.13
781	3031	2.952310	GCCATAACTGATTTGGAGGACC	59.048	50.000	0.00	0.00	31.94	4.46
784	3034	2.951229	AACTGATTTGGAGGACCGTT	57.049	45.000	0.00	0.00	39.42	4.44
795	3045	1.743995	GGACCGTTGTTGCCGCTAT	60.744	57.895	0.00	0.00	0.00	2.97
813	3064	5.340803	CGCTATTTGGAATAGCTCGCTATA	58.659	41.667	22.88	0.00	43.47	1.31
1024	3292	1.293179	CCTCATCACCTGCGACACA	59.707	57.895	0.00	0.00	0.00	3.72
1064	3339	4.388499	GCCCATCACCGTGTCCGT	62.388	66.667	0.00	0.00	0.00	4.69
1179	3454	1.843851	TGGGAAAACCTCGCCATCTAT	59.156	47.619	0.00	0.00	41.11	1.98
1203	3478	3.782443	GGCATCGTCCCCGTCCTT	61.782	66.667	0.00	0.00	35.01	3.36
1377	3652	2.270205	CAGAACTGGGGCGCTGAT	59.730	61.111	15.15	3.04	0.00	2.90
1380	3655	3.056313	GAACTGGGGCGCTGATTGC	62.056	63.158	15.15	0.00	38.57	3.56
1421	3696	2.358003	GCAGGCACTCAGCTTCGT	60.358	61.111	0.00	0.00	44.79	3.85
1434	3709	0.526524	GCTTCGTGATCACCTCCTCG	60.527	60.000	20.03	7.52	0.00	4.63
1464	3739	3.910627	AGTACAAGGTCTTCCAGGACATT	59.089	43.478	0.00	0.00	40.18	2.71
1579	3858	0.640768	GTTCGCTTCGTTCAGATCGG	59.359	55.000	1.05	0.00	0.00	4.18
1597	3876	0.798776	GGACAAGCATGGAACTGTCG	59.201	55.000	0.00	0.00	0.00	4.35
1599	3878	2.350522	GACAAGCATGGAACTGTCGAT	58.649	47.619	0.00	0.00	0.00	3.59
1622	3903	8.653338	CGATACGTATACATTATTCCCTTTTGG	58.347	37.037	8.34	0.00	39.97	3.28
1634	3915	2.427812	TCCCTTTTGGTTGTTCGGTTTC	59.572	45.455	0.00	0.00	38.10	2.78
1638	3919	4.490743	CTTTTGGTTGTTCGGTTTCTTGT	58.509	39.130	0.00	0.00	0.00	3.16
1659	3940	1.760086	ATCGAGTCAGGGGAGCCAG	60.760	63.158	0.00	0.00	0.00	4.85
1660	3941	3.465403	CGAGTCAGGGGAGCCAGG	61.465	72.222	0.00	0.00	0.00	4.45
1661	3942	2.039624	GAGTCAGGGGAGCCAGGA	59.960	66.667	0.00	0.00	0.00	3.86
1662	3943	1.613630	GAGTCAGGGGAGCCAGGAA	60.614	63.158	0.00	0.00	0.00	3.36
1663	3944	0.985490	GAGTCAGGGGAGCCAGGAAT	60.985	60.000	0.00	0.00	0.00	3.01
1664	3945	0.551131	AGTCAGGGGAGCCAGGAATT	60.551	55.000	0.00	0.00	0.00	2.17
1665	3946	0.332972	GTCAGGGGAGCCAGGAATTT	59.667	55.000	0.00	0.00	0.00	1.82
1666	3947	1.084018	TCAGGGGAGCCAGGAATTTT	58.916	50.000	0.00	0.00	0.00	1.82
1667	3948	1.188863	CAGGGGAGCCAGGAATTTTG	58.811	55.000	0.00	0.00	0.00	2.44
1668	3949	0.041684	AGGGGAGCCAGGAATTTTGG	59.958	55.000	0.00	5.75	38.78	3.28
1669	3950	0.252239	GGGGAGCCAGGAATTTTGGT	60.252	55.000	10.54	0.36	38.02	3.67
1670	3951	1.006639	GGGGAGCCAGGAATTTTGGTA	59.993	52.381	10.54	0.00	38.02	3.25
1671	3952	2.379005	GGGAGCCAGGAATTTTGGTAG	58.621	52.381	10.54	0.00	38.02	3.18
1672	3953	2.025321	GGGAGCCAGGAATTTTGGTAGA	60.025	50.000	10.54	0.00	38.02	2.59
1673	3954	3.282885	GGAGCCAGGAATTTTGGTAGAG	58.717	50.000	10.54	0.00	38.02	2.43
1674	3955	3.282885	GAGCCAGGAATTTTGGTAGAGG	58.717	50.000	10.54	0.00	38.02	3.69
1675	3956	2.024941	AGCCAGGAATTTTGGTAGAGGG	60.025	50.000	10.54	0.00	38.02	4.30
1723	4013	4.904853	TGGAGGGGCCAAATATAAAAATCC	59.095	41.667	4.39	0.00	45.87	3.01
1731	4021	7.041167	GGGCCAAATATAAAAATCCAAAGCATC	60.041	37.037	4.39	0.00	0.00	3.91
1760	4058	8.488651	AGCTAAAAATACTAGCGTGTTAACAT	57.511	30.769	12.26	0.00	45.32	2.71
1776	4074	0.979665	ACATATCATGGGGAGAGCCG	59.020	55.000	0.00	0.00	33.83	5.52
1780	4078	4.864334	CATGGGGAGAGCCGTGGC	62.864	72.222	1.67	1.67	42.33	5.01
1785	4083	2.442272	GGAGAGCCGTGGCCTCTA	60.442	66.667	21.06	0.00	43.17	2.43
1789	4087	3.127352	GAGCCGTGGCCTCTACTCG	62.127	68.421	7.39	0.00	43.17	4.18
1791	4089	3.141488	CCGTGGCCTCTACTCGCT	61.141	66.667	3.32	0.00	0.00	4.93
1792	4090	2.409651	CGTGGCCTCTACTCGCTC	59.590	66.667	3.32	0.00	0.00	5.03
1793	4091	2.409651	GTGGCCTCTACTCGCTCG	59.590	66.667	3.32	0.00	0.00	5.03
1794	4092	3.518998	TGGCCTCTACTCGCTCGC	61.519	66.667	3.32	0.00	0.00	5.03
1795	4093	3.213402	GGCCTCTACTCGCTCGCT	61.213	66.667	0.00	0.00	0.00	4.93
1796	4094	2.025441	GCCTCTACTCGCTCGCTG	59.975	66.667	0.00	0.00	0.00	5.18
1797	4095	2.473760	GCCTCTACTCGCTCGCTGA	61.474	63.158	0.00	0.00	0.00	4.26
1798	4096	1.791103	GCCTCTACTCGCTCGCTGAT	61.791	60.000	0.00	0.00	0.00	2.90
1830	4128	4.147449	TCCCTGCATCGAGTGGCG	62.147	66.667	0.00	0.00	42.69	5.69
1929	7463	6.096987	TGTCTCCTCCATCTAGAACAATGTAC	59.903	42.308	0.00	0.00	0.00	2.90
1977	8342	1.210967	ACCACGAAGAAGGACACCAAA	59.789	47.619	0.00	0.00	0.00	3.28
2066	8433	2.177233	GGAGGGTAGAGGACATGGAGTA	59.823	54.545	0.00	0.00	0.00	2.59
2093	8460	3.596214	GTCGTGGTGAGGATTTACATGT	58.404	45.455	2.69	2.69	0.00	3.21
2115	8482	1.561542	GATGAAGGAGGACATGGTGGT	59.438	52.381	0.00	0.00	0.00	4.16
2116	8483	0.692476	TGAAGGAGGACATGGTGGTG	59.308	55.000	0.00	0.00	0.00	4.17
2117	8484	0.035056	GAAGGAGGACATGGTGGTGG	60.035	60.000	0.00	0.00	0.00	4.61
2118	8485	2.044946	GGAGGACATGGTGGTGGC	60.045	66.667	0.00	0.00	0.00	5.01
2203	8576	1.671742	CGAGGTTGCTGGTACCAGT	59.328	57.895	36.31	20.84	45.24	4.00
2322	8709	4.673580	GCAATCGTCTAAGGTTCTCGTACA	60.674	45.833	0.00	0.00	0.00	2.90
2360	8747	7.225931	TGGGATAACAAGTCAATATTCGCTTAC	59.774	37.037	1.94	0.00	0.00	2.34
2399	9034	9.908152	AAAATTAAATCCGAAGAAACTAACAGG	57.092	29.630	0.00	0.00	0.00	4.00
2425	9217	9.748708	GGTTAATATTTTATGATTTCAGCTGCA	57.251	29.630	9.47	0.77	0.00	4.41
2429	9221	8.867112	ATATTTTATGATTTCAGCTGCACTTG	57.133	30.769	9.47	0.00	0.00	3.16
2430	9222	2.649331	ATGATTTCAGCTGCACTTGC	57.351	45.000	9.47	0.00	42.50	4.01
2432	9224	0.455633	GATTTCAGCTGCACTTGCCG	60.456	55.000	9.47	0.00	41.18	5.69
2454	9265	3.633986	GGCCAGTAGGAATGGAATTGAAG	59.366	47.826	0.00	0.00	40.51	3.02
2457	9268	5.500234	CCAGTAGGAATGGAATTGAAGTGA	58.500	41.667	0.00	0.00	40.51	3.41
2463	9274	5.474876	AGGAATGGAATTGAAGTGAGAACAC	59.525	40.000	0.00	0.00	41.36	3.32
2464	9275	5.362556	AATGGAATTGAAGTGAGAACACG	57.637	39.130	0.00	0.00	43.00	4.49
2496	9307	0.317436	GCTCAGTGGATAGAGCGTCG	60.317	60.000	0.00	0.00	46.53	5.12
2519	9330	1.838112	TCCTAAGCGGAAGGTCGTAA	58.162	50.000	2.55	0.00	43.76	3.18

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
95	103	8.428063	ACATTCTTCCAAGGATTAGTCTATCAG	58.572	37.037	0.00	0.00	0.00	2.90
98	110	8.324191	TCACATTCTTCCAAGGATTAGTCTAT	57.676	34.615	0.00	0.00	0.00	1.98
122	499	3.956233	GGTTAACTGAACAACCGGTTTC	58.044	45.455	19.55	14.80	40.63	2.78
167	544	4.421948	CGAGCTTTACTACCTCGTTTCAT	58.578	43.478	0.00	0.00	42.41	2.57
168	545	3.366679	CCGAGCTTTACTACCTCGTTTCA	60.367	47.826	8.24	0.00	45.00	2.69
183	2308	1.153429	GGTCATAACGGCCGAGCTT	60.153	57.895	35.90	19.04	0.00	3.74
222	2347	1.421268	ACCTCCACAGATTGACTTGCA	59.579	47.619	0.00	0.00	0.00	4.08
268	2393	3.243636	ACGTATTAGATCGCGGTTCCAAT	60.244	43.478	6.13	7.51	0.00	3.16
313	2461	4.224991	TGAATGAGGTGAGCAATGATGA	57.775	40.909	0.00	0.00	0.00	2.92
621	2837	4.065789	GCAAGCCGGAGTTTAGCTATATT	58.934	43.478	5.05	0.00	35.30	1.28
762	3012	3.873910	ACGGTCCTCCAAATCAGTTATG	58.126	45.455	0.00	0.00	0.00	1.90
781	3031	0.519519	TCCAAATAGCGGCAACAACG	59.480	50.000	1.45	0.00	0.00	4.10
784	3034	2.357637	GCTATTCCAAATAGCGGCAACA	59.642	45.455	14.05	0.00	37.79	3.33
856	3107	1.134431	ACTGTCAGACATGCACACACA	60.134	47.619	6.91	0.00	0.00	3.72
903	3169	4.805231	TCGTACCCACATGCGCCG	62.805	66.667	4.18	0.00	0.00	6.46
934	3200	1.598517	GTTTGATCCCGTACCCCGT	59.401	57.895	0.00	0.00	33.66	5.28
1048	3323	2.125673	GACGGACACGGTGATGGG	60.126	66.667	16.29	3.62	46.48	4.00
1064	3339	0.039618	GGGAGGGCAGAAATTGGTGA	59.960	55.000	0.00	0.00	0.00	4.02
1128	3403	1.385743	GACATGTCGAAGTGTACACGC	59.614	52.381	19.93	14.79	36.20	5.34
1375	3650	1.718757	CCCGCTAAGCACTGGCAATC	61.719	60.000	0.00	0.00	44.61	2.67
1377	3652	2.359850	CCCGCTAAGCACTGGCAA	60.360	61.111	0.00	0.00	44.61	4.52
1380	3655	4.101448	AGCCCCGCTAAGCACTGG	62.101	66.667	0.00	0.00	36.99	4.00
1387	3662	4.424711	CCCTTGCAGCCCCGCTAA	62.425	66.667	0.00	0.00	36.40	3.09
1410	3685	1.203523	GAGGTGATCACGAAGCTGAGT	59.796	52.381	19.33	0.00	0.00	3.41
1421	3696	3.147595	CGCCCGAGGAGGTGATCA	61.148	66.667	0.00	0.00	39.99	2.92
1434	3709	3.971109	GACCTTGTACTGGCCGCCC	62.971	68.421	7.03	0.00	0.00	6.13
1493	3768	0.179020	CTGTTGCCAGGTGGTGAAGA	60.179	55.000	0.00	0.00	37.57	2.87
1579	3858	1.795768	TCGACAGTTCCATGCTTGTC	58.204	50.000	0.00	0.00	0.00	3.18
1597	3876	9.498176	ACCAAAAGGGAATAATGTATACGTATC	57.502	33.333	12.24	4.81	41.15	2.24
1599	3878	9.111613	CAACCAAAAGGGAATAATGTATACGTA	57.888	33.333	0.00	0.00	41.15	3.57
1622	3903	3.606153	CGATGGACAAGAAACCGAACAAC	60.606	47.826	0.00	0.00	0.00	3.32
1634	3915	0.176680	CCCCTGACTCGATGGACAAG	59.823	60.000	0.00	0.00	0.00	3.16
1638	3919	1.758514	GCTCCCCTGACTCGATGGA	60.759	63.158	0.00	0.00	0.00	3.41
1674	3955	4.724279	TTTATCTCTTCTATTGGCCCCC	57.276	45.455	0.00	0.00	0.00	5.40
1675	3956	5.073428	CCTTTTATCTCTTCTATTGGCCCC	58.927	45.833	0.00	0.00	0.00	5.80
1717	3999	9.777297	TTTTTAGCTTAAGATGCTTTGGATTTT	57.223	25.926	6.67	0.00	41.46	1.82
1721	4011	9.243105	AGTATTTTTAGCTTAAGATGCTTTGGA	57.757	29.630	6.67	0.00	41.46	3.53
1741	4031	8.988934	CCATGATATGTTAACACGCTAGTATTT	58.011	33.333	11.22	0.00	0.00	1.40
1748	4038	3.135712	TCCCCATGATATGTTAACACGCT	59.864	43.478	11.22	0.00	0.00	5.07
1750	4040	4.956085	TCTCCCCATGATATGTTAACACG	58.044	43.478	11.22	0.00	0.00	4.49
1758	4056	0.979665	ACGGCTCTCCCCATGATATG	59.020	55.000	0.00	0.00	0.00	1.78
1760	4058	1.121407	CCACGGCTCTCCCCATGATA	61.121	60.000	0.00	0.00	0.00	2.15
1776	4074	2.409651	CGAGCGAGTAGAGGCCAC	59.590	66.667	5.01	0.00	0.00	5.01
1780	4078	0.237235	GATCAGCGAGCGAGTAGAGG	59.763	60.000	0.00	0.00	0.00	3.69
1782	4080	0.658368	GTGATCAGCGAGCGAGTAGA	59.342	55.000	0.00	0.00	0.00	2.59
1785	4083	2.492090	GGTGATCAGCGAGCGAGT	59.508	61.111	9.50	0.00	0.00	4.18
1789	4087	2.202987	CAGGGGTGATCAGCGAGC	60.203	66.667	18.14	5.05	0.00	5.03
1791	4089	3.785859	GCCAGGGGTGATCAGCGA	61.786	66.667	18.14	0.00	0.00	4.93
1792	4090	3.746949	GAGCCAGGGGTGATCAGCG	62.747	68.421	18.14	6.03	0.00	5.18
1793	4091	2.191641	GAGCCAGGGGTGATCAGC	59.808	66.667	16.65	16.65	0.00	4.26
1794	4092	2.914289	GGAGCCAGGGGTGATCAG	59.086	66.667	0.00	0.00	0.00	2.90
1795	4093	3.083349	CGGAGCCAGGGGTGATCA	61.083	66.667	0.00	0.00	0.00	2.92
1796	4094	3.083997	ACGGAGCCAGGGGTGATC	61.084	66.667	0.00	0.00	0.00	2.92
1797	4095	3.083997	GACGGAGCCAGGGGTGAT	61.084	66.667	0.00	0.00	0.00	3.06
1883	7417	1.946984	AGAGGGGGTCGATGTTGTTA	58.053	50.000	0.00	0.00	0.00	2.41
1929	7463	8.982685	GTAGACATAGTATGATGTTGTTCCATG	58.017	37.037	17.13	0.00	40.18	3.66
1977	8342	1.623811	CCCAGCTAGTACCACACACTT	59.376	52.381	0.00	0.00	0.00	3.16
2003	8370	2.449518	TCAGTGTGAGGGCCCCAA	60.450	61.111	21.43	3.30	0.00	4.12
2093	8460	1.482182	CACCATGTCCTCCTTCATCGA	59.518	52.381	0.00	0.00	0.00	3.59
2172	8543	2.276201	CAACCTCGCCATCGTATTTGA	58.724	47.619	0.00	0.00	36.96	2.69
2203	8576	1.440060	ACGCTCCTCAACGTGTTCA	59.560	52.632	0.00	0.00	41.76	3.18
2322	8709	3.170717	TGTTATCCCAGGAAACGAGACT	58.829	45.455	0.00	0.00	0.00	3.24
2399	9034	9.748708	TGCAGCTGAAATCATAAAATATTAACC	57.251	29.630	20.43	0.00	0.00	2.85
2421	9213	3.899981	TACTGGCCGGCAAGTGCAG	62.900	63.158	41.05	31.56	44.36	4.41
2425	9217	1.562672	ATTCCTACTGGCCGGCAAGT	61.563	55.000	37.55	37.55	34.13	3.16
2426	9218	1.097547	CATTCCTACTGGCCGGCAAG	61.098	60.000	29.92	29.92	0.00	4.01
2427	9219	1.077787	CATTCCTACTGGCCGGCAA	60.078	57.895	30.85	18.34	0.00	4.52
2429	9221	2.203209	CCATTCCTACTGGCCGGC	60.203	66.667	21.18	21.18	0.00	6.13
2430	9222	0.474184	ATTCCATTCCTACTGGCCGG	59.526	55.000	11.02	11.02	33.56	6.13
2432	9224	3.297134	TCAATTCCATTCCTACTGGCC	57.703	47.619	0.00	0.00	33.56	5.36
2434	9226	5.500234	TCACTTCAATTCCATTCCTACTGG	58.500	41.667	0.00	0.00	34.93	4.00
2454	9265	2.658707	GGCGCTGACGTGTTCTCAC	61.659	63.158	7.64	0.00	42.83	3.51
2457	9268	1.802337	TACAGGCGCTGACGTGTTCT	61.802	55.000	7.64	0.00	42.83	3.01

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.