Multiple sequence alignment - TraesCS5B01G528500

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G528500 chr5B 100.000 2873 0 0 1 2873 687222759 687225631 0.000000e+00 5306.0
1 TraesCS5B01G528500 chr5B 92.745 1406 63 12 733 2112 687212504 687213896 0.000000e+00 1995.0
2 TraesCS5B01G528500 chr5B 95.681 764 10 3 2109 2871 687230341 687231082 0.000000e+00 1206.0
3 TraesCS5B01G528500 chr5B 95.157 764 14 2 2109 2871 585401147 585400406 0.000000e+00 1184.0
4 TraesCS5B01G528500 chr5B 90.775 748 64 3 1193 1939 687326382 687327125 0.000000e+00 994.0
5 TraesCS5B01G528500 chr5B 94.280 507 22 2 1 507 687211883 687212382 0.000000e+00 769.0
6 TraesCS5B01G528500 chr5B 85.409 562 42 16 612 1158 687325610 687326146 5.410000e-152 547.0
7 TraesCS5B01G528500 chr5B 86.116 533 42 15 611 1136 687259260 687259767 1.950000e-151 545.0
8 TraesCS5B01G528500 chr5B 85.276 489 35 10 684 1158 687342066 687342531 1.210000e-128 470.0
9 TraesCS5B01G528500 chr5B 97.436 117 2 1 587 703 687212396 687212511 6.280000e-47 198.0
10 TraesCS5B01G528500 chr5D 92.867 2145 113 13 3 2112 544798120 544800259 0.000000e+00 3077.0
11 TraesCS5B01G528500 chr5D 94.634 764 16 7 2108 2869 457555865 457556605 0.000000e+00 1160.0
12 TraesCS5B01G528500 chr5D 90.413 751 63 7 1193 1939 544817237 544817982 0.000000e+00 979.0
13 TraesCS5B01G528500 chr5D 85.638 564 35 14 611 1158 544816469 544817002 4.180000e-153 551.0
14 TraesCS5B01G528500 chr5D 82.990 194 13 6 613 805 544810139 544810313 1.070000e-34 158.0
15 TraesCS5B01G528500 chr1A 88.251 2179 166 48 1 2112 569378325 569376170 0.000000e+00 2523.0
16 TraesCS5B01G528500 chr1A 93.595 765 25 3 2109 2871 555968619 555967877 0.000000e+00 1120.0
17 TraesCS5B01G528500 chr1A 90.983 743 58 7 1201 1939 569355603 569354866 0.000000e+00 992.0
18 TraesCS5B01G528500 chr1A 83.482 448 31 13 736 1164 569356262 569355839 7.510000e-101 377.0
19 TraesCS5B01G528500 chr1A 100.000 35 0 0 612 646 569356296 569356262 6.640000e-07 65.8
20 TraesCS5B01G528500 chr4A 88.344 1956 146 42 216 2112 624732498 624734430 0.000000e+00 2274.0
21 TraesCS5B01G528500 chr4A 90.080 746 65 7 1198 1939 624747261 624748001 0.000000e+00 959.0
22 TraesCS5B01G528500 chr4A 84.043 564 43 27 611 1158 624746490 624747022 1.540000e-137 499.0
23 TraesCS5B01G528500 chr7B 95.157 764 14 3 2109 2871 55381375 55380634 0.000000e+00 1184.0
24 TraesCS5B01G528500 chr7B 95.033 765 15 2 2108 2871 395613973 395613231 0.000000e+00 1181.0
25 TraesCS5B01G528500 chr7B 95.473 729 9 3 2109 2835 395608502 395607796 0.000000e+00 1142.0
26 TraesCS5B01G528500 chr3B 95.119 758 13 3 2109 2864 10342907 10342172 0.000000e+00 1173.0
27 TraesCS5B01G528500 chr3B 94.758 763 16 3 2109 2870 705578151 705577412 0.000000e+00 1166.0
28 TraesCS5B01G528500 chr7A 95.112 757 14 2 2107 2862 701449458 701450192 0.000000e+00 1171.0
29 TraesCS5B01G528500 chr7A 95.897 195 7 1 2678 2871 701444537 701444731 5.980000e-82 315.0
30 TraesCS5B01G528500 chr2D 94.785 767 15 5 2107 2871 284515113 284514370 0.000000e+00 1171.0
31 TraesCS5B01G528500 chr7D 94.987 758 11 7 2106 2859 351659836 351660570 0.000000e+00 1164.0
32 TraesCS5B01G528500 chr2B 93.725 765 24 3 2109 2871 449506053 449506795 0.000000e+00 1125.0
33 TraesCS5B01G528500 chr1D 98.609 575 6 1 2102 2676 115025576 115026148 0.000000e+00 1016.0
34 TraesCS5B01G528500 chr4B 86.143 967 103 20 1001 1939 547309472 547310435 0.000000e+00 1014.0
35 TraesCS5B01G528500 chr4B 79.811 1273 188 39 634 1872 550502463 550503700 0.000000e+00 863.0
36 TraesCS5B01G528500 chr4D 80.309 1295 172 43 614 1873 442223382 442222136 0.000000e+00 902.0
37 TraesCS5B01G528500 chr4D 85.920 348 28 9 612 947 441255523 441255861 4.550000e-93 351.0
38 TraesCS5B01G528500 chr4D 85.841 113 15 1 1 112 435589382 435589270 5.030000e-23 119.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G528500 chr5B 687222759 687225631 2872 False 5306.000000 5306 100.000000 1 2873 1 chr5B.!!$F1 2872
1 TraesCS5B01G528500 chr5B 687230341 687231082 741 False 1206.000000 1206 95.681000 2109 2871 1 chr5B.!!$F2 762
2 TraesCS5B01G528500 chr5B 585400406 585401147 741 True 1184.000000 1184 95.157000 2109 2871 1 chr5B.!!$R1 762
3 TraesCS5B01G528500 chr5B 687211883 687213896 2013 False 987.333333 1995 94.820333 1 2112 3 chr5B.!!$F5 2111
4 TraesCS5B01G528500 chr5B 687325610 687327125 1515 False 770.500000 994 88.092000 612 1939 2 chr5B.!!$F6 1327
5 TraesCS5B01G528500 chr5B 687259260 687259767 507 False 545.000000 545 86.116000 611 1136 1 chr5B.!!$F3 525
6 TraesCS5B01G528500 chr5D 544798120 544800259 2139 False 3077.000000 3077 92.867000 3 2112 1 chr5D.!!$F2 2109
7 TraesCS5B01G528500 chr5D 457555865 457556605 740 False 1160.000000 1160 94.634000 2108 2869 1 chr5D.!!$F1 761
8 TraesCS5B01G528500 chr5D 544816469 544817982 1513 False 765.000000 979 88.025500 611 1939 2 chr5D.!!$F4 1328
9 TraesCS5B01G528500 chr1A 569376170 569378325 2155 True 2523.000000 2523 88.251000 1 2112 1 chr1A.!!$R2 2111
10 TraesCS5B01G528500 chr1A 555967877 555968619 742 True 1120.000000 1120 93.595000 2109 2871 1 chr1A.!!$R1 762
11 TraesCS5B01G528500 chr1A 569354866 569356296 1430 True 478.266667 992 91.488333 612 1939 3 chr1A.!!$R3 1327
12 TraesCS5B01G528500 chr4A 624732498 624734430 1932 False 2274.000000 2274 88.344000 216 2112 1 chr4A.!!$F1 1896
13 TraesCS5B01G528500 chr4A 624746490 624748001 1511 False 729.000000 959 87.061500 611 1939 2 chr4A.!!$F2 1328
14 TraesCS5B01G528500 chr7B 55380634 55381375 741 True 1184.000000 1184 95.157000 2109 2871 1 chr7B.!!$R1 762
15 TraesCS5B01G528500 chr7B 395613231 395613973 742 True 1181.000000 1181 95.033000 2108 2871 1 chr7B.!!$R3 763
16 TraesCS5B01G528500 chr7B 395607796 395608502 706 True 1142.000000 1142 95.473000 2109 2835 1 chr7B.!!$R2 726
17 TraesCS5B01G528500 chr3B 10342172 10342907 735 True 1173.000000 1173 95.119000 2109 2864 1 chr3B.!!$R1 755
18 TraesCS5B01G528500 chr3B 705577412 705578151 739 True 1166.000000 1166 94.758000 2109 2870 1 chr3B.!!$R2 761
19 TraesCS5B01G528500 chr7A 701449458 701450192 734 False 1171.000000 1171 95.112000 2107 2862 1 chr7A.!!$F2 755
20 TraesCS5B01G528500 chr2D 284514370 284515113 743 True 1171.000000 1171 94.785000 2107 2871 1 chr2D.!!$R1 764
21 TraesCS5B01G528500 chr7D 351659836 351660570 734 False 1164.000000 1164 94.987000 2106 2859 1 chr7D.!!$F1 753
22 TraesCS5B01G528500 chr2B 449506053 449506795 742 False 1125.000000 1125 93.725000 2109 2871 1 chr2B.!!$F1 762
23 TraesCS5B01G528500 chr1D 115025576 115026148 572 False 1016.000000 1016 98.609000 2102 2676 1 chr1D.!!$F1 574
24 TraesCS5B01G528500 chr4B 547309472 547310435 963 False 1014.000000 1014 86.143000 1001 1939 1 chr4B.!!$F1 938
25 TraesCS5B01G528500 chr4B 550502463 550503700 1237 False 863.000000 863 79.811000 634 1872 1 chr4B.!!$F2 1238
26 TraesCS5B01G528500 chr4D 442222136 442223382 1246 True 902.000000 902 80.309000 614 1873 1 chr4D.!!$R2 1259

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
551 579 0.322906 GGGCTTGCAGTTAGAGGCTT 60.323 55.0 8.59 0.0 36.35 4.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2393 2732 1.062587 CTCAAATTCGTCATCACGGGC 59.937 52.381 0.0 0.0 46.7 6.13 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
51 52 7.343833 TGACAGGTTAAAGATAGTTACCCTAGG 59.656 40.741 0.06 0.06 25.79 3.02
89 90 9.213777 AGTTATACTTCCTGATTTGATCCTACA 57.786 33.333 0.00 0.00 0.00 2.74
105 106 2.158900 CCTACAATGTGAAGATCGGGCT 60.159 50.000 0.00 0.00 0.00 5.19
116 117 0.747255 GATCGGGCTACTCTCTTGCA 59.253 55.000 0.00 0.00 0.00 4.08
128 129 7.042119 GGCTACTCTCTTGCATAAAGAATCTTC 60.042 40.741 0.00 0.00 44.38 2.87
129 130 7.710475 GCTACTCTCTTGCATAAAGAATCTTCT 59.290 37.037 0.00 0.00 44.38 2.85
225 228 4.569966 CAGAGAGATCAAAGGGTTGAATCG 59.430 45.833 0.00 0.00 46.66 3.34
230 233 5.500234 AGATCAAAGGGTTGAATCGATCAA 58.500 37.500 0.00 2.22 46.66 2.57
322 329 0.599558 GACATAGCGGCCGTATACCA 59.400 55.000 28.70 5.97 0.00 3.25
422 436 4.853468 TGCCTTGGTGTCCTTATCATTA 57.147 40.909 0.00 0.00 0.00 1.90
551 579 0.322906 GGGCTTGCAGTTAGAGGCTT 60.323 55.000 8.59 0.00 36.35 4.35
552 580 1.090728 GGCTTGCAGTTAGAGGCTTC 58.909 55.000 1.86 0.00 33.61 3.86
591 619 1.521681 GTGGCTAGCGTGACATCCC 60.522 63.158 9.00 0.00 0.00 3.85
873 920 5.012561 AGCTAGATCCCTATTTAAGCACCAG 59.987 44.000 0.00 0.00 0.00 4.00
944 997 2.760650 TCTAGCAAGCTAGCTAACTGCA 59.239 45.455 31.33 20.14 45.69 4.41
983 1053 4.006319 CTGATCACTCCCTGTTTCTTTCC 58.994 47.826 0.00 0.00 0.00 3.13
999 1071 0.534203 TTCCGGGACTCAGCACAAAC 60.534 55.000 0.00 0.00 0.00 2.93
1013 1085 0.827507 ACAAACATGGTGGCTGGGAC 60.828 55.000 0.00 0.00 0.00 4.46
1136 1214 2.289444 ACGGTTCTGACACAATGGGTAG 60.289 50.000 0.00 0.00 0.00 3.18
1187 1289 6.018016 GCACCATCAATTTGCCAAATATTACC 60.018 38.462 2.54 0.00 0.00 2.85
1302 1610 3.702334 GATCAACAACGCGGCGCTC 62.702 63.158 30.54 14.03 0.00 5.03
1376 1684 0.249447 TGTGACACCAGCAAGTCGAG 60.249 55.000 2.45 0.00 37.58 4.04
1830 2138 4.338710 GTGCCGGCCTGGTGGTTA 62.339 66.667 26.77 0.00 41.21 2.85
1851 2159 1.213013 CGGACAGACCTTCTCCACG 59.787 63.158 0.00 0.00 36.31 4.94
1881 2189 8.489559 CAACAGTTCGACTACTAGCTAGTATAG 58.510 40.741 29.24 23.52 43.09 1.31
1897 2206 9.046296 AGCTAGTATAGACATTGTACAATTTGC 57.954 33.333 18.50 13.13 42.77 3.68
1906 2219 6.035843 ACATTGTACAATTTGCATTCCGATC 58.964 36.000 18.50 0.00 0.00 3.69
1972 2309 0.950836 TGTTCAGTTCGTTGCCCATG 59.049 50.000 0.00 0.00 0.00 3.66
1992 2329 6.369059 CATGGAGTGGATGTAGATTTGAAC 57.631 41.667 0.00 0.00 0.00 3.18
2031 2368 3.047115 ACGACTCCCTCTATGTCTCCTA 58.953 50.000 0.00 0.00 0.00 2.94
2112 2451 7.162761 TCTCCCTCGTTTCACATTTAATGTTA 58.837 34.615 7.97 0.00 42.70 2.41
2666 3005 2.047655 TGTCGCGACCACAATCCC 60.048 61.111 34.34 8.73 0.00 3.85
2667 3006 2.047655 GTCGCGACCACAATCCCA 60.048 61.111 28.61 0.00 0.00 4.37
2668 3007 1.669760 GTCGCGACCACAATCCCAA 60.670 57.895 28.61 0.00 0.00 4.12
2669 3008 1.071642 TCGCGACCACAATCCCAAA 59.928 52.632 3.71 0.00 0.00 3.28
2670 3009 1.209127 CGCGACCACAATCCCAAAC 59.791 57.895 0.00 0.00 0.00 2.93
2671 3010 1.584495 GCGACCACAATCCCAAACC 59.416 57.895 0.00 0.00 0.00 3.27
2672 3011 1.873165 CGACCACAATCCCAAACCG 59.127 57.895 0.00 0.00 0.00 4.44
2673 3012 0.604243 CGACCACAATCCCAAACCGA 60.604 55.000 0.00 0.00 0.00 4.69
2674 3013 0.879090 GACCACAATCCCAAACCGAC 59.121 55.000 0.00 0.00 0.00 4.79
2675 3014 0.476771 ACCACAATCCCAAACCGACT 59.523 50.000 0.00 0.00 0.00 4.18
2676 3015 1.133606 ACCACAATCCCAAACCGACTT 60.134 47.619 0.00 0.00 0.00 3.01
2677 3016 1.269448 CCACAATCCCAAACCGACTTG 59.731 52.381 0.00 0.00 0.00 3.16
2678 3017 2.226330 CACAATCCCAAACCGACTTGA 58.774 47.619 0.00 0.00 0.00 3.02
2679 3018 2.031157 CACAATCCCAAACCGACTTGAC 60.031 50.000 0.00 0.00 0.00 3.18
2680 3019 1.539827 CAATCCCAAACCGACTTGACC 59.460 52.381 0.00 0.00 0.00 4.02
2681 3020 0.768622 ATCCCAAACCGACTTGACCA 59.231 50.000 0.00 0.00 0.00 4.02
2682 3021 0.768622 TCCCAAACCGACTTGACCAT 59.231 50.000 0.00 0.00 0.00 3.55
2683 3022 1.979308 TCCCAAACCGACTTGACCATA 59.021 47.619 0.00 0.00 0.00 2.74
2684 3023 2.372504 TCCCAAACCGACTTGACCATAA 59.627 45.455 0.00 0.00 0.00 1.90
2685 3024 3.009695 TCCCAAACCGACTTGACCATAAT 59.990 43.478 0.00 0.00 0.00 1.28
2686 3025 3.377172 CCCAAACCGACTTGACCATAATC 59.623 47.826 0.00 0.00 0.00 1.75
2687 3026 3.377172 CCAAACCGACTTGACCATAATCC 59.623 47.826 0.00 0.00 0.00 3.01
2740 3082 7.998580 ACTTACCGGACAAAAATCAAAACTTA 58.001 30.769 9.46 0.00 0.00 2.24
2829 3171 4.147322 CGGACCATTCACGCGCAC 62.147 66.667 5.73 0.00 0.00 5.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
45 46 1.834263 ACTAGCTGCAAGAACCTAGGG 59.166 52.381 14.81 0.00 34.07 3.53
51 52 6.256757 CAGGAAGTATAACTAGCTGCAAGAAC 59.743 42.308 1.02 0.00 34.07 3.01
89 90 3.034635 AGAGTAGCCCGATCTTCACATT 58.965 45.455 0.00 0.00 0.00 2.71
105 106 8.753133 TGAGAAGATTCTTTATGCAAGAGAGTA 58.247 33.333 0.00 0.00 42.76 2.59
116 117 6.183360 CGCAAACCCATGAGAAGATTCTTTAT 60.183 38.462 0.00 0.00 37.73 1.40
128 129 0.099968 CTGATGCGCAAACCCATGAG 59.900 55.000 17.11 0.00 0.00 2.90
129 130 0.322366 TCTGATGCGCAAACCCATGA 60.322 50.000 17.11 3.25 0.00 3.07
165 166 6.365520 AGTATCCCATCCTTGTAAAATCACC 58.634 40.000 0.00 0.00 0.00 4.02
255 262 6.659776 AGTCTTCAGCGTTTTCTTTATGAAC 58.340 36.000 0.00 0.00 33.88 3.18
322 329 6.016527 GCCATGTGATCAATGTCAATCATACT 60.017 38.462 0.00 0.00 35.48 2.12
422 436 5.892348 AGGACACCAATCACTCCTAAAAAT 58.108 37.500 0.00 0.00 30.91 1.82
551 579 8.789762 GCCACCAACTAGTTAAAATTTCTAAGA 58.210 33.333 8.04 0.00 0.00 2.10
552 580 8.793592 AGCCACCAACTAGTTAAAATTTCTAAG 58.206 33.333 8.04 0.00 0.00 2.18
591 619 3.479006 CAATTGTTCCTTCGTTAGTGCG 58.521 45.455 0.00 0.00 0.00 5.34
710 741 2.560504 TGCGCGTTCTAATCATCCAAT 58.439 42.857 8.43 0.00 0.00 3.16
873 920 4.418392 GTGAGGAATGATTGTGACAATGC 58.582 43.478 16.52 8.01 0.00 3.56
944 997 1.988107 TCAGATGGTTGAGCTTCCCTT 59.012 47.619 0.00 0.00 0.00 3.95
983 1053 0.518636 CATGTTTGTGCTGAGTCCCG 59.481 55.000 0.00 0.00 0.00 5.14
1152 1246 2.107950 TTGATGGTGCCGAGGTTAAG 57.892 50.000 0.00 0.00 0.00 1.85
1154 1248 2.752354 CAAATTGATGGTGCCGAGGTTA 59.248 45.455 0.00 0.00 0.00 2.85
1155 1249 1.545582 CAAATTGATGGTGCCGAGGTT 59.454 47.619 0.00 0.00 0.00 3.50
1156 1250 1.176527 CAAATTGATGGTGCCGAGGT 58.823 50.000 0.00 0.00 0.00 3.85
1158 1252 3.334078 GCAAATTGATGGTGCCGAG 57.666 52.632 0.00 0.00 31.94 4.63
1187 1289 3.397835 TGCACGCACGCATGATAG 58.602 55.556 0.00 0.00 36.86 2.08
1251 1559 2.982470 GTTGTACAAGTTCTCGTACCCG 59.018 50.000 8.98 0.00 37.73 5.28
1440 1748 4.796231 CCGTTGTCGCTCGGGAGG 62.796 72.222 0.00 0.00 42.61 4.30
1446 1754 3.414700 CAGCCACCGTTGTCGCTC 61.415 66.667 0.00 0.00 36.76 5.03
1653 1961 1.552337 ACTGACATGCTCTTGACCGAT 59.448 47.619 0.00 0.00 0.00 4.18
1830 2138 1.550976 GTGGAGAAGGTCTGTCCGAAT 59.449 52.381 0.00 0.00 41.99 3.34
1851 2159 2.150397 AGTAGTCGAACTGTTGCCAC 57.850 50.000 0.00 0.00 0.00 5.01
1881 2189 5.398169 TCGGAATGCAAATTGTACAATGTC 58.602 37.500 21.46 13.37 0.00 3.06
1897 2206 2.477825 AGCGAACTGATGATCGGAATG 58.522 47.619 8.51 0.00 38.62 2.67
1906 2219 2.328473 TCTGAACGAAGCGAACTGATG 58.672 47.619 0.00 0.00 0.00 3.07
1972 2309 5.491982 ACAGTTCAAATCTACATCCACTCC 58.508 41.667 0.00 0.00 0.00 3.85
1992 2329 6.255887 GGAGTCGTGGATTACAGATTTTACAG 59.744 42.308 0.00 0.00 0.00 2.74
2393 2732 1.062587 CTCAAATTCGTCATCACGGGC 59.937 52.381 0.00 0.00 46.70 6.13
2666 3005 3.377172 GGGATTATGGTCAAGTCGGTTTG 59.623 47.826 0.00 0.00 0.00 2.93
2667 3006 3.009695 TGGGATTATGGTCAAGTCGGTTT 59.990 43.478 0.00 0.00 0.00 3.27
2668 3007 2.574369 TGGGATTATGGTCAAGTCGGTT 59.426 45.455 0.00 0.00 0.00 4.44
2669 3008 2.193127 TGGGATTATGGTCAAGTCGGT 58.807 47.619 0.00 0.00 0.00 4.69
2670 3009 3.275617 TTGGGATTATGGTCAAGTCGG 57.724 47.619 0.00 0.00 0.00 4.79
2671 3010 3.377172 GGTTTGGGATTATGGTCAAGTCG 59.623 47.826 0.00 0.00 0.00 4.18
2672 3011 3.377172 CGGTTTGGGATTATGGTCAAGTC 59.623 47.826 0.00 0.00 0.00 3.01
2673 3012 3.009695 TCGGTTTGGGATTATGGTCAAGT 59.990 43.478 0.00 0.00 0.00 3.16
2674 3013 3.377172 GTCGGTTTGGGATTATGGTCAAG 59.623 47.826 0.00 0.00 0.00 3.02
2675 3014 3.009695 AGTCGGTTTGGGATTATGGTCAA 59.990 43.478 0.00 0.00 0.00 3.18
2676 3015 2.574369 AGTCGGTTTGGGATTATGGTCA 59.426 45.455 0.00 0.00 0.00 4.02
2677 3016 3.277142 AGTCGGTTTGGGATTATGGTC 57.723 47.619 0.00 0.00 0.00 4.02
2678 3017 3.352648 CAAGTCGGTTTGGGATTATGGT 58.647 45.455 0.00 0.00 0.00 3.55
2679 3018 2.687935 CCAAGTCGGTTTGGGATTATGG 59.312 50.000 10.03 0.00 43.16 2.74


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.