Multiple sequence alignment - TraesCS5B01G527900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G527900 chr5B 100.000 2356 0 0 1 2356 686778235 686780590 0.000000e+00 4351.0
1 TraesCS5B01G527900 chr5B 96.131 1344 50 2 1 1343 401664971 401663629 0.000000e+00 2193.0
2 TraesCS5B01G527900 chr5B 87.949 780 66 13 1590 2356 433333569 433334333 0.000000e+00 894.0
3 TraesCS5B01G527900 chr5B 97.436 39 1 0 1536 1574 686779852 686779890 1.510000e-07 67.6
4 TraesCS5B01G527900 chr3B 96.657 1346 41 4 1 1343 81301086 81302430 0.000000e+00 2233.0
5 TraesCS5B01G527900 chr3B 80.845 710 113 16 641 1341 399502183 399502878 9.580000e-149 536.0
6 TraesCS5B01G527900 chr2B 90.997 1344 117 3 1 1343 247562655 247561315 0.000000e+00 1808.0
7 TraesCS5B01G527900 chr2A 88.556 1337 151 2 6 1341 771799654 771798319 0.000000e+00 1620.0
8 TraesCS5B01G527900 chr6B 85.767 1349 169 16 1 1343 49987572 49988903 0.000000e+00 1406.0
9 TraesCS5B01G527900 chr6B 84.060 665 96 10 624 1283 630869140 630868481 1.190000e-177 632.0
10 TraesCS5B01G527900 chr6B 83.897 621 98 2 1 620 630871218 630870599 2.020000e-165 592.0
11 TraesCS5B01G527900 chr4B 93.611 767 47 2 1590 2356 415968359 415969123 0.000000e+00 1144.0
12 TraesCS5B01G527900 chr4B 97.436 39 1 0 1536 1574 415968387 415968425 1.510000e-07 67.6
13 TraesCS5B01G527900 chr1A 90.677 783 47 7 1590 2356 577397881 577398653 0.000000e+00 1018.0
14 TraesCS5B01G527900 chr7A 87.984 749 61 12 1622 2356 333046403 333047136 0.000000e+00 857.0
15 TraesCS5B01G527900 chr4D 78.296 1350 280 12 1 1343 55070103 55068760 0.000000e+00 857.0
16 TraesCS5B01G527900 chr4D 78.541 233 50 0 3 235 9062057 9061825 1.130000e-33 154.0
17 TraesCS5B01G527900 chr1D 81.996 1022 163 17 333 1343 335361088 335362099 0.000000e+00 848.0
18 TraesCS5B01G527900 chr1D 89.313 524 38 7 1590 2112 163152015 163152521 1.970000e-180 641.0
19 TraesCS5B01G527900 chr1D 80.156 514 71 21 1703 2188 314506190 314505680 2.880000e-94 355.0
20 TraesCS5B01G527900 chr1D 85.328 259 22 2 2111 2356 163152615 163152870 1.080000e-63 254.0
21 TraesCS5B01G527900 chr7D 87.270 707 76 7 1590 2295 166651519 166650826 0.000000e+00 795.0
22 TraesCS5B01G527900 chr2D 82.377 488 60 15 1875 2356 210904010 210904477 3.650000e-108 401.0
23 TraesCS5B01G527900 chr6D 80.045 441 69 13 1593 2020 176916617 176916183 2.270000e-80 309.0
24 TraesCS5B01G527900 chr6D 85.121 289 41 2 1590 1877 36327904 36328191 6.370000e-76 294.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G527900 chr5B 686778235 686780590 2355 False 2209.3 4351 98.7180 1 2356 2 chr5B.!!$F2 2355
1 TraesCS5B01G527900 chr5B 401663629 401664971 1342 True 2193.0 2193 96.1310 1 1343 1 chr5B.!!$R1 1342
2 TraesCS5B01G527900 chr5B 433333569 433334333 764 False 894.0 894 87.9490 1590 2356 1 chr5B.!!$F1 766
3 TraesCS5B01G527900 chr3B 81301086 81302430 1344 False 2233.0 2233 96.6570 1 1343 1 chr3B.!!$F1 1342
4 TraesCS5B01G527900 chr3B 399502183 399502878 695 False 536.0 536 80.8450 641 1341 1 chr3B.!!$F2 700
5 TraesCS5B01G527900 chr2B 247561315 247562655 1340 True 1808.0 1808 90.9970 1 1343 1 chr2B.!!$R1 1342
6 TraesCS5B01G527900 chr2A 771798319 771799654 1335 True 1620.0 1620 88.5560 6 1341 1 chr2A.!!$R1 1335
7 TraesCS5B01G527900 chr6B 49987572 49988903 1331 False 1406.0 1406 85.7670 1 1343 1 chr6B.!!$F1 1342
8 TraesCS5B01G527900 chr6B 630868481 630871218 2737 True 612.0 632 83.9785 1 1283 2 chr6B.!!$R1 1282
9 TraesCS5B01G527900 chr4B 415968359 415969123 764 False 605.8 1144 95.5235 1536 2356 2 chr4B.!!$F1 820
10 TraesCS5B01G527900 chr1A 577397881 577398653 772 False 1018.0 1018 90.6770 1590 2356 1 chr1A.!!$F1 766
11 TraesCS5B01G527900 chr7A 333046403 333047136 733 False 857.0 857 87.9840 1622 2356 1 chr7A.!!$F1 734
12 TraesCS5B01G527900 chr4D 55068760 55070103 1343 True 857.0 857 78.2960 1 1343 1 chr4D.!!$R2 1342
13 TraesCS5B01G527900 chr1D 335361088 335362099 1011 False 848.0 848 81.9960 333 1343 1 chr1D.!!$F1 1010
14 TraesCS5B01G527900 chr1D 163152015 163152870 855 False 447.5 641 87.3205 1590 2356 2 chr1D.!!$F2 766
15 TraesCS5B01G527900 chr1D 314505680 314506190 510 True 355.0 355 80.1560 1703 2188 1 chr1D.!!$R1 485
16 TraesCS5B01G527900 chr7D 166650826 166651519 693 True 795.0 795 87.2700 1590 2295 1 chr7D.!!$R1 705

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
583 585 0.828762 TGCTCAACCTGCTGGCAAAT 60.829 50.0 9.95 0.0 36.63 2.32 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1473 2936 0.03467 ATGGGAGAACTGGCTGCTTC 60.035 55.0 0.0 0.0 0.0 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
103 105 3.269178 GGATGAACAAAGGCTGAGAGAG 58.731 50.000 0.00 0.00 0.00 3.20
164 166 2.353406 CGTACTTCACCGAGGAATGGTT 60.353 50.000 0.00 0.00 37.72 3.67
232 234 3.680620 GAGTGCATACCGGCTGGCA 62.681 63.158 12.89 5.77 39.70 4.92
262 264 1.676635 CGTACCGGAGAGGACACCA 60.677 63.158 9.46 0.00 45.00 4.17
270 272 1.816863 GAGAGGACACCAGCGACCAA 61.817 60.000 0.00 0.00 0.00 3.67
409 411 3.501828 GCAAACACCATCGGCATATATCA 59.498 43.478 0.00 0.00 0.00 2.15
520 522 5.450965 GCAACAAATGAGGATGGTATGGAAG 60.451 44.000 0.00 0.00 0.00 3.46
583 585 0.828762 TGCTCAACCTGCTGGCAAAT 60.829 50.000 9.95 0.00 36.63 2.32
882 2342 5.065859 CGGTTGATGGTGCTTATTCACATAA 59.934 40.000 0.00 0.00 38.66 1.90
1069 2530 1.202891 TCCAGTCGGACTCTTCTGTCA 60.203 52.381 7.89 0.00 35.91 3.58
1358 2821 3.904800 AAAAAGGGGTGGTTTTGACTG 57.095 42.857 0.00 0.00 0.00 3.51
1359 2822 2.838637 AAAGGGGTGGTTTTGACTGA 57.161 45.000 0.00 0.00 0.00 3.41
1360 2823 3.328535 AAAGGGGTGGTTTTGACTGAT 57.671 42.857 0.00 0.00 0.00 2.90
1361 2824 2.586648 AGGGGTGGTTTTGACTGATC 57.413 50.000 0.00 0.00 0.00 2.92
1362 2825 1.780309 AGGGGTGGTTTTGACTGATCA 59.220 47.619 0.00 0.00 0.00 2.92
1363 2826 2.379907 AGGGGTGGTTTTGACTGATCAT 59.620 45.455 0.00 0.00 33.85 2.45
1364 2827 2.493278 GGGGTGGTTTTGACTGATCATG 59.507 50.000 0.00 0.00 33.85 3.07
1365 2828 3.157087 GGGTGGTTTTGACTGATCATGT 58.843 45.455 0.00 0.00 33.85 3.21
1366 2829 3.573967 GGGTGGTTTTGACTGATCATGTT 59.426 43.478 0.00 0.00 33.85 2.71
1367 2830 4.549458 GGTGGTTTTGACTGATCATGTTG 58.451 43.478 0.00 0.00 33.85 3.33
1368 2831 4.037923 GGTGGTTTTGACTGATCATGTTGT 59.962 41.667 0.00 0.00 33.85 3.32
1369 2832 5.451798 GGTGGTTTTGACTGATCATGTTGTT 60.452 40.000 0.00 0.00 33.85 2.83
1370 2833 5.459762 GTGGTTTTGACTGATCATGTTGTTG 59.540 40.000 0.00 0.00 33.85 3.33
1371 2834 4.445385 GGTTTTGACTGATCATGTTGTTGC 59.555 41.667 0.00 0.00 33.85 4.17
1372 2835 3.921119 TTGACTGATCATGTTGTTGCC 57.079 42.857 0.00 0.00 33.85 4.52
1373 2836 3.144657 TGACTGATCATGTTGTTGCCT 57.855 42.857 0.00 0.00 0.00 4.75
1374 2837 3.489355 TGACTGATCATGTTGTTGCCTT 58.511 40.909 0.00 0.00 0.00 4.35
1375 2838 3.503363 TGACTGATCATGTTGTTGCCTTC 59.497 43.478 0.00 0.00 0.00 3.46
1376 2839 3.489355 ACTGATCATGTTGTTGCCTTCA 58.511 40.909 0.00 0.00 0.00 3.02
1377 2840 3.504906 ACTGATCATGTTGTTGCCTTCAG 59.495 43.478 0.00 0.00 0.00 3.02
1378 2841 3.489355 TGATCATGTTGTTGCCTTCAGT 58.511 40.909 0.00 0.00 0.00 3.41
1379 2842 3.253921 TGATCATGTTGTTGCCTTCAGTG 59.746 43.478 0.00 0.00 0.00 3.66
1380 2843 2.653726 TCATGTTGTTGCCTTCAGTGT 58.346 42.857 0.00 0.00 0.00 3.55
1381 2844 3.023119 TCATGTTGTTGCCTTCAGTGTT 58.977 40.909 0.00 0.00 0.00 3.32
1382 2845 4.203226 TCATGTTGTTGCCTTCAGTGTTA 58.797 39.130 0.00 0.00 0.00 2.41
1383 2846 4.036262 TCATGTTGTTGCCTTCAGTGTTAC 59.964 41.667 0.00 0.00 0.00 2.50
1384 2847 3.348119 TGTTGTTGCCTTCAGTGTTACA 58.652 40.909 0.00 0.00 0.00 2.41
1385 2848 3.951037 TGTTGTTGCCTTCAGTGTTACAT 59.049 39.130 0.00 0.00 0.00 2.29
1386 2849 5.126779 TGTTGTTGCCTTCAGTGTTACATA 58.873 37.500 0.00 0.00 0.00 2.29
1387 2850 5.008217 TGTTGTTGCCTTCAGTGTTACATAC 59.992 40.000 0.00 0.00 0.00 2.39
1388 2851 4.709250 TGTTGCCTTCAGTGTTACATACA 58.291 39.130 0.00 0.00 0.00 2.29
1389 2852 5.312895 TGTTGCCTTCAGTGTTACATACAT 58.687 37.500 0.00 0.00 39.39 2.29
1390 2853 5.411361 TGTTGCCTTCAGTGTTACATACATC 59.589 40.000 0.00 0.00 39.39 3.06
1391 2854 4.513442 TGCCTTCAGTGTTACATACATCC 58.487 43.478 0.00 0.00 39.39 3.51
1392 2855 4.225042 TGCCTTCAGTGTTACATACATCCT 59.775 41.667 0.00 0.00 39.39 3.24
1393 2856 5.186198 GCCTTCAGTGTTACATACATCCTT 58.814 41.667 0.00 0.00 39.39 3.36
1394 2857 5.648092 GCCTTCAGTGTTACATACATCCTTT 59.352 40.000 0.00 0.00 39.39 3.11
1395 2858 6.403636 GCCTTCAGTGTTACATACATCCTTTG 60.404 42.308 0.00 0.00 39.39 2.77
1396 2859 6.655003 CCTTCAGTGTTACATACATCCTTTGT 59.345 38.462 0.00 0.00 39.39 2.83
1397 2860 7.174946 CCTTCAGTGTTACATACATCCTTTGTT 59.825 37.037 0.00 0.00 39.39 2.83
1398 2861 8.458573 TTCAGTGTTACATACATCCTTTGTTT 57.541 30.769 0.00 0.00 39.39 2.83
1399 2862 8.094798 TCAGTGTTACATACATCCTTTGTTTC 57.905 34.615 0.00 0.00 39.39 2.78
1400 2863 7.936847 TCAGTGTTACATACATCCTTTGTTTCT 59.063 33.333 0.00 0.00 39.39 2.52
1401 2864 9.214957 CAGTGTTACATACATCCTTTGTTTCTA 57.785 33.333 0.00 0.00 39.39 2.10
1402 2865 9.787435 AGTGTTACATACATCCTTTGTTTCTAA 57.213 29.630 0.00 0.00 39.39 2.10
1412 2875 9.893305 ACATCCTTTGTTTCTAAAAATAAGACG 57.107 29.630 0.00 0.00 33.74 4.18
1413 2876 9.893305 CATCCTTTGTTTCTAAAAATAAGACGT 57.107 29.630 0.00 0.00 28.84 4.34
1419 2882 8.342725 TGTTTCTAAAAATAAGACGTTTTGGC 57.657 30.769 0.83 0.00 0.00 4.52
1420 2883 7.974501 TGTTTCTAAAAATAAGACGTTTTGGCA 59.025 29.630 0.83 0.00 0.00 4.92
1421 2884 8.476925 GTTTCTAAAAATAAGACGTTTTGGCAG 58.523 33.333 0.83 0.00 0.00 4.85
1422 2885 7.266922 TCTAAAAATAAGACGTTTTGGCAGT 57.733 32.000 0.83 0.00 0.00 4.40
1423 2886 7.708998 TCTAAAAATAAGACGTTTTGGCAGTT 58.291 30.769 0.83 0.00 0.00 3.16
1424 2887 6.822073 AAAAATAAGACGTTTTGGCAGTTC 57.178 33.333 0.83 0.00 0.00 3.01
1425 2888 5.508200 AAATAAGACGTTTTGGCAGTTCA 57.492 34.783 0.83 0.00 0.00 3.18
1426 2889 5.508200 AATAAGACGTTTTGGCAGTTCAA 57.492 34.783 0.83 0.00 0.00 2.69
1427 2890 5.705609 ATAAGACGTTTTGGCAGTTCAAT 57.294 34.783 0.83 0.00 0.00 2.57
1428 2891 4.385358 AAGACGTTTTGGCAGTTCAATT 57.615 36.364 0.00 0.00 0.00 2.32
1429 2892 4.385358 AGACGTTTTGGCAGTTCAATTT 57.615 36.364 0.00 0.00 0.00 1.82
1430 2893 4.111916 AGACGTTTTGGCAGTTCAATTTG 58.888 39.130 0.00 0.00 0.00 2.32
1431 2894 4.109050 GACGTTTTGGCAGTTCAATTTGA 58.891 39.130 0.00 0.00 0.00 2.69
1432 2895 3.862845 ACGTTTTGGCAGTTCAATTTGAC 59.137 39.130 0.00 0.00 0.00 3.18
1433 2896 3.862267 CGTTTTGGCAGTTCAATTTGACA 59.138 39.130 0.00 0.00 0.00 3.58
1434 2897 4.026640 CGTTTTGGCAGTTCAATTTGACAG 60.027 41.667 0.00 0.00 33.07 3.51
1435 2898 4.998671 TTTGGCAGTTCAATTTGACAGA 57.001 36.364 0.00 0.00 33.07 3.41
1436 2899 4.572985 TTGGCAGTTCAATTTGACAGAG 57.427 40.909 0.00 0.00 33.07 3.35
1437 2900 2.886523 TGGCAGTTCAATTTGACAGAGG 59.113 45.455 0.00 0.00 0.00 3.69
1438 2901 2.887152 GGCAGTTCAATTTGACAGAGGT 59.113 45.455 0.00 0.00 0.00 3.85
1439 2902 4.072131 GGCAGTTCAATTTGACAGAGGTA 58.928 43.478 0.00 0.00 0.00 3.08
1440 2903 4.154918 GGCAGTTCAATTTGACAGAGGTAG 59.845 45.833 0.00 0.00 0.00 3.18
1441 2904 4.757149 GCAGTTCAATTTGACAGAGGTAGT 59.243 41.667 0.00 0.00 0.00 2.73
1442 2905 5.932303 GCAGTTCAATTTGACAGAGGTAGTA 59.068 40.000 0.00 0.00 0.00 1.82
1443 2906 6.595716 GCAGTTCAATTTGACAGAGGTAGTAT 59.404 38.462 0.00 0.00 0.00 2.12
1444 2907 7.119846 GCAGTTCAATTTGACAGAGGTAGTATT 59.880 37.037 0.00 0.00 0.00 1.89
1445 2908 9.003658 CAGTTCAATTTGACAGAGGTAGTATTT 57.996 33.333 0.00 0.00 0.00 1.40
1446 2909 9.574516 AGTTCAATTTGACAGAGGTAGTATTTT 57.425 29.630 0.00 0.00 0.00 1.82
1470 2933 7.496529 TTTTTCTAGAGAACAGAACACCATG 57.503 36.000 0.00 0.00 31.86 3.66
1471 2934 4.193826 TCTAGAGAACAGAACACCATGC 57.806 45.455 0.00 0.00 0.00 4.06
1472 2935 2.936919 AGAGAACAGAACACCATGCA 57.063 45.000 0.00 0.00 0.00 3.96
1473 2936 2.775890 AGAGAACAGAACACCATGCAG 58.224 47.619 0.00 0.00 0.00 4.41
1474 2937 2.369860 AGAGAACAGAACACCATGCAGA 59.630 45.455 0.00 0.00 0.00 4.26
1475 2938 3.141398 GAGAACAGAACACCATGCAGAA 58.859 45.455 0.00 0.00 0.00 3.02
1476 2939 3.144506 AGAACAGAACACCATGCAGAAG 58.855 45.455 0.00 0.00 0.00 2.85
1477 2940 1.242076 ACAGAACACCATGCAGAAGC 58.758 50.000 0.00 0.00 42.57 3.86
1487 2950 4.393693 GCAGAAGCAGCCAGTTCT 57.606 55.556 0.00 0.00 41.58 3.01
1488 2951 2.169842 GCAGAAGCAGCCAGTTCTC 58.830 57.895 0.00 0.00 41.58 2.87
1489 2952 1.304509 GCAGAAGCAGCCAGTTCTCC 61.305 60.000 0.00 0.00 41.58 3.71
1490 2953 0.676151 CAGAAGCAGCCAGTTCTCCC 60.676 60.000 0.00 0.00 30.31 4.30
1491 2954 1.130054 AGAAGCAGCCAGTTCTCCCA 61.130 55.000 0.00 0.00 0.00 4.37
1492 2955 0.034670 GAAGCAGCCAGTTCTCCCAT 60.035 55.000 0.00 0.00 0.00 4.00
1493 2956 0.323178 AAGCAGCCAGTTCTCCCATG 60.323 55.000 0.00 0.00 0.00 3.66
1494 2957 1.001641 GCAGCCAGTTCTCCCATGT 60.002 57.895 0.00 0.00 0.00 3.21
1495 2958 1.310933 GCAGCCAGTTCTCCCATGTG 61.311 60.000 0.00 0.00 0.00 3.21
1496 2959 0.325933 CAGCCAGTTCTCCCATGTGA 59.674 55.000 0.00 0.00 0.00 3.58
1497 2960 1.067295 AGCCAGTTCTCCCATGTGAA 58.933 50.000 0.00 0.00 0.00 3.18
1498 2961 1.425066 AGCCAGTTCTCCCATGTGAAA 59.575 47.619 0.00 0.00 0.00 2.69
1499 2962 2.158475 AGCCAGTTCTCCCATGTGAAAA 60.158 45.455 0.00 0.00 0.00 2.29
1500 2963 2.229784 GCCAGTTCTCCCATGTGAAAAG 59.770 50.000 0.00 0.00 0.00 2.27
1501 2964 2.229784 CCAGTTCTCCCATGTGAAAAGC 59.770 50.000 0.00 0.00 0.00 3.51
1502 2965 2.229784 CAGTTCTCCCATGTGAAAAGCC 59.770 50.000 0.00 0.00 0.00 4.35
1503 2966 2.158475 AGTTCTCCCATGTGAAAAGCCA 60.158 45.455 0.00 0.00 0.00 4.75
1504 2967 2.627699 GTTCTCCCATGTGAAAAGCCAA 59.372 45.455 0.00 0.00 0.00 4.52
1505 2968 3.173953 TCTCCCATGTGAAAAGCCAAT 57.826 42.857 0.00 0.00 0.00 3.16
1506 2969 2.827322 TCTCCCATGTGAAAAGCCAATG 59.173 45.455 0.00 0.00 0.00 2.82
1507 2970 1.275856 TCCCATGTGAAAAGCCAATGC 59.724 47.619 0.00 0.00 37.95 3.56
1508 2971 1.002201 CCCATGTGAAAAGCCAATGCA 59.998 47.619 0.00 0.00 41.13 3.96
1509 2972 2.070783 CCATGTGAAAAGCCAATGCAC 58.929 47.619 0.00 0.00 41.13 4.57
1510 2973 1.722464 CATGTGAAAAGCCAATGCACG 59.278 47.619 0.00 0.00 41.13 5.34
1511 2974 0.597118 TGTGAAAAGCCAATGCACGC 60.597 50.000 0.00 0.00 41.13 5.34
1512 2975 0.597118 GTGAAAAGCCAATGCACGCA 60.597 50.000 0.00 0.00 41.13 5.24
1513 2976 0.318869 TGAAAAGCCAATGCACGCAG 60.319 50.000 0.00 0.00 41.13 5.18
1514 2977 1.620413 GAAAAGCCAATGCACGCAGC 61.620 55.000 0.00 0.00 45.96 5.25
1523 2986 3.256936 GCACGCAGCATCTTCACA 58.743 55.556 0.00 0.00 44.79 3.58
1524 2987 1.575922 GCACGCAGCATCTTCACAA 59.424 52.632 0.00 0.00 44.79 3.33
1525 2988 0.040157 GCACGCAGCATCTTCACAAA 60.040 50.000 0.00 0.00 44.79 2.83
1526 2989 1.959747 CACGCAGCATCTTCACAAAG 58.040 50.000 0.00 0.00 0.00 2.77
1527 2990 1.265095 CACGCAGCATCTTCACAAAGT 59.735 47.619 0.00 0.00 33.95 2.66
1528 2991 2.480037 CACGCAGCATCTTCACAAAGTA 59.520 45.455 0.00 0.00 33.95 2.24
1529 2992 2.738846 ACGCAGCATCTTCACAAAGTAG 59.261 45.455 0.00 0.00 33.95 2.57
1530 2993 2.738846 CGCAGCATCTTCACAAAGTAGT 59.261 45.455 0.00 0.00 33.95 2.73
1531 2994 3.926527 CGCAGCATCTTCACAAAGTAGTA 59.073 43.478 0.00 0.00 33.95 1.82
1532 2995 4.388773 CGCAGCATCTTCACAAAGTAGTAA 59.611 41.667 0.00 0.00 33.95 2.24
1533 2996 5.107104 CGCAGCATCTTCACAAAGTAGTAAA 60.107 40.000 0.00 0.00 33.95 2.01
1534 2997 6.565811 CGCAGCATCTTCACAAAGTAGTAAAA 60.566 38.462 0.00 0.00 33.95 1.52
1535 2998 7.138736 GCAGCATCTTCACAAAGTAGTAAAAA 58.861 34.615 0.00 0.00 33.95 1.94
1568 3031 9.755064 ACTGACTAAAAATTTCGACAAATATCG 57.245 29.630 0.00 0.00 43.63 2.92
1569 3032 8.595781 TGACTAAAAATTTCGACAAATATCGC 57.404 30.769 0.00 0.00 41.97 4.58
1570 3033 7.424167 TGACTAAAAATTTCGACAAATATCGCG 59.576 33.333 0.00 0.00 41.97 5.87
1571 3034 4.991758 AAAATTTCGACAAATATCGCGC 57.008 36.364 0.00 0.00 41.97 6.86
1572 3035 3.666883 AATTTCGACAAATATCGCGCA 57.333 38.095 8.75 0.00 41.97 6.09
1573 3036 2.429213 TTTCGACAAATATCGCGCAC 57.571 45.000 8.75 0.00 41.97 5.34
1574 3037 0.648441 TTCGACAAATATCGCGCACC 59.352 50.000 8.75 0.00 41.97 5.01
1575 3038 0.458716 TCGACAAATATCGCGCACCA 60.459 50.000 8.75 0.00 41.97 4.17
1576 3039 0.043053 CGACAAATATCGCGCACCAG 60.043 55.000 8.75 0.00 34.90 4.00
1577 3040 0.304705 GACAAATATCGCGCACCAGG 59.695 55.000 8.75 0.00 0.00 4.45
1578 3041 0.107897 ACAAATATCGCGCACCAGGA 60.108 50.000 8.75 0.00 0.00 3.86
1579 3042 1.229428 CAAATATCGCGCACCAGGAT 58.771 50.000 8.75 3.86 0.00 3.24
1580 3043 1.603802 CAAATATCGCGCACCAGGATT 59.396 47.619 8.75 0.00 0.00 3.01
1581 3044 1.967319 AATATCGCGCACCAGGATTT 58.033 45.000 8.75 0.00 0.00 2.17
1582 3045 1.512926 ATATCGCGCACCAGGATTTC 58.487 50.000 8.75 0.00 0.00 2.17
1583 3046 0.464036 TATCGCGCACCAGGATTTCT 59.536 50.000 8.75 0.00 0.00 2.52
1584 3047 0.811616 ATCGCGCACCAGGATTTCTC 60.812 55.000 8.75 0.00 0.00 2.87
1585 3048 1.741401 CGCGCACCAGGATTTCTCA 60.741 57.895 8.75 0.00 0.00 3.27
1586 3049 1.091771 CGCGCACCAGGATTTCTCAT 61.092 55.000 8.75 0.00 0.00 2.90
1587 3050 0.379669 GCGCACCAGGATTTCTCATG 59.620 55.000 0.30 0.00 32.98 3.07
1588 3051 1.742761 CGCACCAGGATTTCTCATGT 58.257 50.000 0.00 0.00 31.23 3.21
1666 3129 1.565156 ATCGCGCACGTCAATGTGTT 61.565 50.000 8.75 0.00 41.94 3.32
1977 3449 3.455152 GCCCCTTGCGTTTCCTTT 58.545 55.556 0.00 0.00 0.00 3.11
2160 3762 9.832445 TGAGTTTGCCTAATAGTATAAAGGAAG 57.168 33.333 13.34 0.00 31.36 3.46
2207 3810 1.663695 ACATATTACCTGTGCGGCAC 58.336 50.000 25.55 25.55 35.61 5.01
2271 3877 1.276622 GAGAGGCAGGTGGTTAGGAA 58.723 55.000 0.00 0.00 0.00 3.36
2280 3886 1.536907 TGGTTAGGAAGCCGGACCA 60.537 57.895 5.05 4.94 39.63 4.02
2303 3922 3.269347 CCGGCGCGGGTTGATAAG 61.269 66.667 24.78 0.00 44.15 1.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
103 105 3.615224 ACATCCATGTCCCAAAAATGC 57.385 42.857 0.00 0.00 35.87 3.56
262 264 2.184167 CGGGTTGTTGTTGGTCGCT 61.184 57.895 0.00 0.00 0.00 4.93
409 411 0.846693 AGGGGCAACTGTCTCTTGTT 59.153 50.000 0.00 0.00 0.00 2.83
486 488 1.333308 TCATTTGTTGCCATATCGCCG 59.667 47.619 0.00 0.00 0.00 6.46
520 522 2.793954 AGGAGTTCCTGGCTTGGTAGC 61.794 57.143 0.00 0.00 46.55 3.58
583 585 5.045651 ACAATCCCTCATGTACTCATCACAA 60.046 40.000 0.00 0.00 31.15 3.33
687 2144 3.923017 AGCTGCACAAAAAGGATACAC 57.077 42.857 1.02 0.00 41.41 2.90
851 2311 1.676968 CACCATCAACCGACAGGGA 59.323 57.895 0.00 0.00 43.47 4.20
882 2342 2.203167 CCGCAGCTGAGCCATCAT 60.203 61.111 20.43 0.00 34.12 2.45
947 2408 8.909708 TTTGTTGCAGTTAAATATGTATCTGC 57.090 30.769 21.79 21.79 42.97 4.26
1069 2530 4.609098 CGAGAGGGCAGATAGGGT 57.391 61.111 0.00 0.00 0.00 4.34
1263 2726 0.241481 GAGATCCTCGATACACGGCC 59.759 60.000 0.00 0.00 42.82 6.13
1343 2806 2.286365 TGATCAGTCAAAACCACCCC 57.714 50.000 0.00 0.00 0.00 4.95
1344 2807 3.157087 ACATGATCAGTCAAAACCACCC 58.843 45.455 0.00 0.00 38.01 4.61
1345 2808 4.037923 ACAACATGATCAGTCAAAACCACC 59.962 41.667 0.00 0.00 38.01 4.61
1346 2809 5.186996 ACAACATGATCAGTCAAAACCAC 57.813 39.130 0.00 0.00 38.01 4.16
1347 2810 5.590145 CAACAACATGATCAGTCAAAACCA 58.410 37.500 0.00 0.00 38.01 3.67
1348 2811 4.445385 GCAACAACATGATCAGTCAAAACC 59.555 41.667 0.00 0.00 38.01 3.27
1349 2812 4.445385 GGCAACAACATGATCAGTCAAAAC 59.555 41.667 0.00 0.00 38.01 2.43
1350 2813 4.341806 AGGCAACAACATGATCAGTCAAAA 59.658 37.500 0.00 0.00 37.09 2.44
1351 2814 3.890756 AGGCAACAACATGATCAGTCAAA 59.109 39.130 0.00 0.00 37.09 2.69
1352 2815 3.489355 AGGCAACAACATGATCAGTCAA 58.511 40.909 0.00 0.00 37.09 3.18
1353 2816 3.144657 AGGCAACAACATGATCAGTCA 57.855 42.857 0.00 0.00 37.77 3.41
1354 2817 3.503363 TGAAGGCAACAACATGATCAGTC 59.497 43.478 0.00 0.00 41.41 3.51
1355 2818 3.489355 TGAAGGCAACAACATGATCAGT 58.511 40.909 0.00 0.00 41.41 3.41
1356 2819 3.504906 ACTGAAGGCAACAACATGATCAG 59.495 43.478 0.00 0.00 41.41 2.90
1357 2820 3.253921 CACTGAAGGCAACAACATGATCA 59.746 43.478 0.00 0.00 41.41 2.92
1358 2821 3.254166 ACACTGAAGGCAACAACATGATC 59.746 43.478 0.00 0.00 41.41 2.92
1359 2822 3.225104 ACACTGAAGGCAACAACATGAT 58.775 40.909 0.00 0.00 41.41 2.45
1360 2823 2.653726 ACACTGAAGGCAACAACATGA 58.346 42.857 0.00 0.00 41.41 3.07
1361 2824 3.441496 AACACTGAAGGCAACAACATG 57.559 42.857 0.00 0.00 41.41 3.21
1362 2825 3.951037 TGTAACACTGAAGGCAACAACAT 59.049 39.130 0.00 0.00 41.41 2.71
1363 2826 3.348119 TGTAACACTGAAGGCAACAACA 58.652 40.909 0.00 0.00 41.41 3.33
1364 2827 4.568152 ATGTAACACTGAAGGCAACAAC 57.432 40.909 0.00 0.00 41.41 3.32
1365 2828 5.126779 TGTATGTAACACTGAAGGCAACAA 58.873 37.500 0.00 0.00 32.87 2.83
1366 2829 4.709250 TGTATGTAACACTGAAGGCAACA 58.291 39.130 0.00 0.00 32.87 3.33
1367 2830 5.163754 GGATGTATGTAACACTGAAGGCAAC 60.164 44.000 0.00 0.00 42.09 4.17
1368 2831 4.941263 GGATGTATGTAACACTGAAGGCAA 59.059 41.667 0.00 0.00 42.09 4.52
1369 2832 4.225042 AGGATGTATGTAACACTGAAGGCA 59.775 41.667 0.00 0.00 42.09 4.75
1370 2833 4.770795 AGGATGTATGTAACACTGAAGGC 58.229 43.478 0.00 0.00 42.09 4.35
1371 2834 6.655003 ACAAAGGATGTATGTAACACTGAAGG 59.345 38.462 0.00 0.00 42.09 3.46
1372 2835 7.672983 ACAAAGGATGTATGTAACACTGAAG 57.327 36.000 0.00 0.00 42.09 3.02
1373 2836 8.458573 AAACAAAGGATGTATGTAACACTGAA 57.541 30.769 0.00 0.00 42.99 3.02
1374 2837 7.936847 AGAAACAAAGGATGTATGTAACACTGA 59.063 33.333 0.00 0.00 42.99 3.41
1375 2838 8.099364 AGAAACAAAGGATGTATGTAACACTG 57.901 34.615 0.00 0.00 42.99 3.66
1376 2839 9.787435 TTAGAAACAAAGGATGTATGTAACACT 57.213 29.630 0.00 0.00 42.99 3.55
1386 2849 9.893305 CGTCTTATTTTTAGAAACAAAGGATGT 57.107 29.630 4.00 0.00 46.82 3.06
1387 2850 9.893305 ACGTCTTATTTTTAGAAACAAAGGATG 57.107 29.630 0.00 0.00 0.00 3.51
1393 2856 8.809478 GCCAAAACGTCTTATTTTTAGAAACAA 58.191 29.630 0.00 0.00 0.00 2.83
1394 2857 7.974501 TGCCAAAACGTCTTATTTTTAGAAACA 59.025 29.630 0.00 0.00 0.00 2.83
1395 2858 8.342725 TGCCAAAACGTCTTATTTTTAGAAAC 57.657 30.769 0.00 0.00 0.00 2.78
1396 2859 8.192110 ACTGCCAAAACGTCTTATTTTTAGAAA 58.808 29.630 0.00 0.00 0.00 2.52
1397 2860 7.708998 ACTGCCAAAACGTCTTATTTTTAGAA 58.291 30.769 0.00 0.00 0.00 2.10
1398 2861 7.266922 ACTGCCAAAACGTCTTATTTTTAGA 57.733 32.000 0.00 0.00 0.00 2.10
1399 2862 7.646130 TGAACTGCCAAAACGTCTTATTTTTAG 59.354 33.333 0.00 0.00 0.00 1.85
1400 2863 7.481642 TGAACTGCCAAAACGTCTTATTTTTA 58.518 30.769 0.00 0.00 0.00 1.52
1401 2864 6.334202 TGAACTGCCAAAACGTCTTATTTTT 58.666 32.000 0.00 0.00 0.00 1.94
1402 2865 5.897050 TGAACTGCCAAAACGTCTTATTTT 58.103 33.333 0.00 0.00 0.00 1.82
1403 2866 5.508200 TGAACTGCCAAAACGTCTTATTT 57.492 34.783 0.00 0.00 0.00 1.40
1404 2867 5.508200 TTGAACTGCCAAAACGTCTTATT 57.492 34.783 0.00 0.00 0.00 1.40
1405 2868 5.705609 ATTGAACTGCCAAAACGTCTTAT 57.294 34.783 0.00 0.00 0.00 1.73
1406 2869 5.508200 AATTGAACTGCCAAAACGTCTTA 57.492 34.783 0.00 0.00 0.00 2.10
1407 2870 4.385358 AATTGAACTGCCAAAACGTCTT 57.615 36.364 0.00 0.00 0.00 3.01
1408 2871 4.111916 CAAATTGAACTGCCAAAACGTCT 58.888 39.130 0.00 0.00 0.00 4.18
1409 2872 4.026886 GTCAAATTGAACTGCCAAAACGTC 60.027 41.667 0.00 0.00 0.00 4.34
1410 2873 3.862845 GTCAAATTGAACTGCCAAAACGT 59.137 39.130 0.00 0.00 0.00 3.99
1411 2874 3.862267 TGTCAAATTGAACTGCCAAAACG 59.138 39.130 0.00 0.00 0.00 3.60
1412 2875 5.108517 TCTGTCAAATTGAACTGCCAAAAC 58.891 37.500 0.00 0.00 0.00 2.43
1413 2876 5.336150 TCTGTCAAATTGAACTGCCAAAA 57.664 34.783 0.00 0.00 0.00 2.44
1414 2877 4.202141 CCTCTGTCAAATTGAACTGCCAAA 60.202 41.667 0.00 0.00 0.00 3.28
1415 2878 3.318839 CCTCTGTCAAATTGAACTGCCAA 59.681 43.478 0.00 0.00 0.00 4.52
1416 2879 2.886523 CCTCTGTCAAATTGAACTGCCA 59.113 45.455 0.00 0.00 0.00 4.92
1417 2880 2.887152 ACCTCTGTCAAATTGAACTGCC 59.113 45.455 0.00 0.00 0.00 4.85
1418 2881 4.757149 ACTACCTCTGTCAAATTGAACTGC 59.243 41.667 0.00 0.00 0.00 4.40
1419 2882 8.553459 AATACTACCTCTGTCAAATTGAACTG 57.447 34.615 0.00 0.00 0.00 3.16
1420 2883 9.574516 AAAATACTACCTCTGTCAAATTGAACT 57.425 29.630 0.00 0.00 0.00 3.01
1446 2909 6.017109 GCATGGTGTTCTGTTCTCTAGAAAAA 60.017 38.462 0.00 0.00 36.06 1.94
1447 2910 5.470098 GCATGGTGTTCTGTTCTCTAGAAAA 59.530 40.000 0.00 0.00 36.06 2.29
1448 2911 4.997395 GCATGGTGTTCTGTTCTCTAGAAA 59.003 41.667 0.00 0.00 36.06 2.52
1449 2912 4.040339 TGCATGGTGTTCTGTTCTCTAGAA 59.960 41.667 0.00 0.00 32.08 2.10
1450 2913 3.578282 TGCATGGTGTTCTGTTCTCTAGA 59.422 43.478 0.00 0.00 0.00 2.43
1451 2914 3.930336 TGCATGGTGTTCTGTTCTCTAG 58.070 45.455 0.00 0.00 0.00 2.43
1452 2915 3.578282 TCTGCATGGTGTTCTGTTCTCTA 59.422 43.478 0.00 0.00 0.00 2.43
1453 2916 2.369860 TCTGCATGGTGTTCTGTTCTCT 59.630 45.455 0.00 0.00 0.00 3.10
1454 2917 2.771089 TCTGCATGGTGTTCTGTTCTC 58.229 47.619 0.00 0.00 0.00 2.87
1455 2918 2.936919 TCTGCATGGTGTTCTGTTCT 57.063 45.000 0.00 0.00 0.00 3.01
1456 2919 2.351157 GCTTCTGCATGGTGTTCTGTTC 60.351 50.000 0.00 0.00 39.41 3.18
1457 2920 1.610522 GCTTCTGCATGGTGTTCTGTT 59.389 47.619 0.00 0.00 39.41 3.16
1458 2921 1.242076 GCTTCTGCATGGTGTTCTGT 58.758 50.000 0.00 0.00 39.41 3.41
1459 2922 1.241165 TGCTTCTGCATGGTGTTCTG 58.759 50.000 0.00 0.00 45.31 3.02
1460 2923 3.731716 TGCTTCTGCATGGTGTTCT 57.268 47.368 0.00 0.00 45.31 3.01
1470 2933 1.304509 GGAGAACTGGCTGCTTCTGC 61.305 60.000 7.28 6.62 40.20 4.26
1471 2934 0.676151 GGGAGAACTGGCTGCTTCTG 60.676 60.000 7.28 0.00 0.00 3.02
1472 2935 1.130054 TGGGAGAACTGGCTGCTTCT 61.130 55.000 0.00 0.45 0.00 2.85
1473 2936 0.034670 ATGGGAGAACTGGCTGCTTC 60.035 55.000 0.00 0.00 0.00 3.86
1474 2937 0.323178 CATGGGAGAACTGGCTGCTT 60.323 55.000 0.00 0.00 0.00 3.91
1475 2938 1.302285 CATGGGAGAACTGGCTGCT 59.698 57.895 0.00 0.00 0.00 4.24
1476 2939 1.001641 ACATGGGAGAACTGGCTGC 60.002 57.895 0.00 0.00 0.00 5.25
1477 2940 0.325933 TCACATGGGAGAACTGGCTG 59.674 55.000 0.00 0.00 0.00 4.85
1478 2941 1.067295 TTCACATGGGAGAACTGGCT 58.933 50.000 0.00 0.00 0.00 4.75
1479 2942 1.909700 TTTCACATGGGAGAACTGGC 58.090 50.000 0.00 0.00 0.00 4.85
1480 2943 2.229784 GCTTTTCACATGGGAGAACTGG 59.770 50.000 0.00 0.00 0.00 4.00
1481 2944 2.229784 GGCTTTTCACATGGGAGAACTG 59.770 50.000 0.00 0.00 0.00 3.16
1482 2945 2.158475 TGGCTTTTCACATGGGAGAACT 60.158 45.455 0.00 0.00 0.00 3.01
1483 2946 2.238521 TGGCTTTTCACATGGGAGAAC 58.761 47.619 0.00 0.00 0.00 3.01
1484 2947 2.673775 TGGCTTTTCACATGGGAGAA 57.326 45.000 0.00 0.00 0.00 2.87
1485 2948 2.673775 TTGGCTTTTCACATGGGAGA 57.326 45.000 0.00 0.00 0.00 3.71
1486 2949 2.675889 GCATTGGCTTTTCACATGGGAG 60.676 50.000 0.00 0.00 36.96 4.30
1487 2950 1.275856 GCATTGGCTTTTCACATGGGA 59.724 47.619 0.00 0.00 36.96 4.37
1488 2951 1.002201 TGCATTGGCTTTTCACATGGG 59.998 47.619 0.00 0.00 41.91 4.00
1489 2952 2.070783 GTGCATTGGCTTTTCACATGG 58.929 47.619 0.00 0.00 41.91 3.66
1490 2953 1.722464 CGTGCATTGGCTTTTCACATG 59.278 47.619 0.00 0.00 41.91 3.21
1491 2954 1.936203 GCGTGCATTGGCTTTTCACAT 60.936 47.619 0.00 0.00 41.91 3.21
1492 2955 0.597118 GCGTGCATTGGCTTTTCACA 60.597 50.000 0.00 0.00 41.91 3.58
1493 2956 0.597118 TGCGTGCATTGGCTTTTCAC 60.597 50.000 8.50 0.00 41.91 3.18
1494 2957 0.318869 CTGCGTGCATTGGCTTTTCA 60.319 50.000 8.50 0.00 41.91 2.69
1495 2958 1.620413 GCTGCGTGCATTGGCTTTTC 61.620 55.000 8.50 0.00 42.31 2.29
1496 2959 1.665599 GCTGCGTGCATTGGCTTTT 60.666 52.632 8.50 0.00 42.31 2.27
1497 2960 2.048877 GCTGCGTGCATTGGCTTT 60.049 55.556 8.50 0.00 42.31 3.51
1506 2969 0.040157 TTTGTGAAGATGCTGCGTGC 60.040 50.000 0.00 0.00 43.25 5.34
1507 2970 1.265095 ACTTTGTGAAGATGCTGCGTG 59.735 47.619 0.00 0.00 36.69 5.34
1508 2971 1.597742 ACTTTGTGAAGATGCTGCGT 58.402 45.000 0.00 0.00 36.69 5.24
1509 2972 2.738846 ACTACTTTGTGAAGATGCTGCG 59.261 45.455 0.00 0.00 36.69 5.18
1510 2973 5.862924 TTACTACTTTGTGAAGATGCTGC 57.137 39.130 0.00 0.00 36.69 5.25
1542 3005 9.755064 CGATATTTGTCGAAATTTTTAGTCAGT 57.245 29.630 0.00 0.00 44.06 3.41
1543 3006 8.725046 GCGATATTTGTCGAAATTTTTAGTCAG 58.275 33.333 0.64 0.00 44.06 3.51
1544 3007 7.424167 CGCGATATTTGTCGAAATTTTTAGTCA 59.576 33.333 0.00 0.00 44.06 3.41
1545 3008 7.561010 GCGCGATATTTGTCGAAATTTTTAGTC 60.561 37.037 12.10 0.00 44.06 2.59
1546 3009 6.193959 GCGCGATATTTGTCGAAATTTTTAGT 59.806 34.615 12.10 0.00 44.06 2.24
1547 3010 6.193776 TGCGCGATATTTGTCGAAATTTTTAG 59.806 34.615 12.10 0.00 44.06 1.85
1548 3011 6.022095 GTGCGCGATATTTGTCGAAATTTTTA 60.022 34.615 12.10 0.00 44.06 1.52
1549 3012 4.854291 TGCGCGATATTTGTCGAAATTTTT 59.146 33.333 12.10 0.00 44.06 1.94
1550 3013 4.262045 GTGCGCGATATTTGTCGAAATTTT 59.738 37.500 12.10 0.00 44.06 1.82
1551 3014 3.783943 GTGCGCGATATTTGTCGAAATTT 59.216 39.130 12.10 0.00 44.06 1.82
1552 3015 3.350912 GTGCGCGATATTTGTCGAAATT 58.649 40.909 12.10 0.00 44.06 1.82
1553 3016 2.286184 GGTGCGCGATATTTGTCGAAAT 60.286 45.455 12.10 0.00 44.06 2.17
1554 3017 1.061421 GGTGCGCGATATTTGTCGAAA 59.939 47.619 12.10 0.00 44.06 3.46
1555 3018 0.648441 GGTGCGCGATATTTGTCGAA 59.352 50.000 12.10 0.00 44.06 3.71
1556 3019 0.458716 TGGTGCGCGATATTTGTCGA 60.459 50.000 12.10 0.00 44.06 4.20
1557 3020 0.043053 CTGGTGCGCGATATTTGTCG 60.043 55.000 12.10 0.00 44.14 4.35
1558 3021 0.304705 CCTGGTGCGCGATATTTGTC 59.695 55.000 12.10 0.00 0.00 3.18
1559 3022 0.107897 TCCTGGTGCGCGATATTTGT 60.108 50.000 12.10 0.00 0.00 2.83
1560 3023 1.229428 ATCCTGGTGCGCGATATTTG 58.771 50.000 12.10 0.00 0.00 2.32
1561 3024 1.967319 AATCCTGGTGCGCGATATTT 58.033 45.000 12.10 0.00 0.00 1.40
1562 3025 1.873591 GAAATCCTGGTGCGCGATATT 59.126 47.619 12.10 0.00 0.00 1.28
1563 3026 1.070758 AGAAATCCTGGTGCGCGATAT 59.929 47.619 12.10 0.00 0.00 1.63
1564 3027 0.464036 AGAAATCCTGGTGCGCGATA 59.536 50.000 12.10 0.00 0.00 2.92
1565 3028 0.811616 GAGAAATCCTGGTGCGCGAT 60.812 55.000 12.10 0.00 0.00 4.58
1566 3029 1.447838 GAGAAATCCTGGTGCGCGA 60.448 57.895 12.10 0.00 0.00 5.87
1567 3030 1.091771 ATGAGAAATCCTGGTGCGCG 61.092 55.000 0.00 0.00 0.00 6.86
1568 3031 0.379669 CATGAGAAATCCTGGTGCGC 59.620 55.000 0.00 0.00 0.00 6.09
1569 3032 1.399440 CACATGAGAAATCCTGGTGCG 59.601 52.381 0.00 0.00 0.00 5.34
1570 3033 2.715046 TCACATGAGAAATCCTGGTGC 58.285 47.619 0.00 0.00 0.00 5.01
1571 3034 3.441572 GGTTCACATGAGAAATCCTGGTG 59.558 47.826 7.17 0.00 0.00 4.17
1572 3035 3.074390 TGGTTCACATGAGAAATCCTGGT 59.926 43.478 7.17 0.00 0.00 4.00
1573 3036 3.689347 TGGTTCACATGAGAAATCCTGG 58.311 45.455 7.17 0.00 0.00 4.45
1574 3037 3.693085 CCTGGTTCACATGAGAAATCCTG 59.307 47.826 7.17 9.14 0.00 3.86
1575 3038 3.588842 TCCTGGTTCACATGAGAAATCCT 59.411 43.478 7.17 0.00 0.00 3.24
1576 3039 3.955471 TCCTGGTTCACATGAGAAATCC 58.045 45.455 7.17 6.39 0.00 3.01
1577 3040 6.376581 AGAAATCCTGGTTCACATGAGAAATC 59.623 38.462 7.17 4.23 0.00 2.17
1578 3041 6.251471 AGAAATCCTGGTTCACATGAGAAAT 58.749 36.000 7.17 0.00 0.00 2.17
1579 3042 5.634118 AGAAATCCTGGTTCACATGAGAAA 58.366 37.500 7.17 0.00 0.00 2.52
1580 3043 5.221904 TGAGAAATCCTGGTTCACATGAGAA 60.222 40.000 0.00 0.00 0.00 2.87
1581 3044 4.286808 TGAGAAATCCTGGTTCACATGAGA 59.713 41.667 0.00 0.00 0.00 3.27
1582 3045 4.582869 TGAGAAATCCTGGTTCACATGAG 58.417 43.478 0.00 0.00 0.00 2.90
1583 3046 4.639078 TGAGAAATCCTGGTTCACATGA 57.361 40.909 0.00 0.00 0.00 3.07
1584 3047 5.706916 CTTTGAGAAATCCTGGTTCACATG 58.293 41.667 0.00 0.00 0.00 3.21
1585 3048 4.219288 GCTTTGAGAAATCCTGGTTCACAT 59.781 41.667 0.00 0.00 0.00 3.21
1586 3049 3.569701 GCTTTGAGAAATCCTGGTTCACA 59.430 43.478 0.00 0.00 0.00 3.58
1587 3050 3.823304 AGCTTTGAGAAATCCTGGTTCAC 59.177 43.478 0.00 0.00 0.00 3.18
1588 3051 4.104383 AGCTTTGAGAAATCCTGGTTCA 57.896 40.909 0.00 0.00 0.00 3.18
1666 3129 4.021544 GTGAATTTGTGGCATACCTCCAAA 60.022 41.667 0.00 0.00 39.87 3.28
1762 3227 5.050431 GGTACCAAACAATGTTTGCAATGAC 60.050 40.000 27.95 19.53 30.44 3.06
2047 3550 0.252057 TCCAAGATGACGAGGACCCA 60.252 55.000 0.00 0.00 0.00 4.51
2160 3762 4.889409 TGTATCATCCAATTCTTTCCCTGC 59.111 41.667 0.00 0.00 0.00 4.85
2207 3810 4.037803 TGAAATTTCATCCCACACACACTG 59.962 41.667 16.91 0.00 31.01 3.66


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.