Multiple sequence alignment - TraesCS5B01G527900
Loading Multiple Alignment...
BLAST Results
BLAST Results - Input Sequence
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this
to extract flanking regions for cloning. If the result of the multiple sequence alignment is
not as expected, these results could be used for further investigation.
qseqid
sseqid
percentage.identical
alignment.length
no.mismatch
no.gap.openings
qstart
qend
sstart
send
evalue
bitscore
0
TraesCS5B01G527900
chr5B
100.000
2356
0
0
1
2356
686778235
686780590
0.000000e+00
4351.0
1
TraesCS5B01G527900
chr5B
96.131
1344
50
2
1
1343
401664971
401663629
0.000000e+00
2193.0
2
TraesCS5B01G527900
chr5B
87.949
780
66
13
1590
2356
433333569
433334333
0.000000e+00
894.0
3
TraesCS5B01G527900
chr5B
97.436
39
1
0
1536
1574
686779852
686779890
1.510000e-07
67.6
4
TraesCS5B01G527900
chr3B
96.657
1346
41
4
1
1343
81301086
81302430
0.000000e+00
2233.0
5
TraesCS5B01G527900
chr3B
80.845
710
113
16
641
1341
399502183
399502878
9.580000e-149
536.0
6
TraesCS5B01G527900
chr2B
90.997
1344
117
3
1
1343
247562655
247561315
0.000000e+00
1808.0
7
TraesCS5B01G527900
chr2A
88.556
1337
151
2
6
1341
771799654
771798319
0.000000e+00
1620.0
8
TraesCS5B01G527900
chr6B
85.767
1349
169
16
1
1343
49987572
49988903
0.000000e+00
1406.0
9
TraesCS5B01G527900
chr6B
84.060
665
96
10
624
1283
630869140
630868481
1.190000e-177
632.0
10
TraesCS5B01G527900
chr6B
83.897
621
98
2
1
620
630871218
630870599
2.020000e-165
592.0
11
TraesCS5B01G527900
chr4B
93.611
767
47
2
1590
2356
415968359
415969123
0.000000e+00
1144.0
12
TraesCS5B01G527900
chr4B
97.436
39
1
0
1536
1574
415968387
415968425
1.510000e-07
67.6
13
TraesCS5B01G527900
chr1A
90.677
783
47
7
1590
2356
577397881
577398653
0.000000e+00
1018.0
14
TraesCS5B01G527900
chr7A
87.984
749
61
12
1622
2356
333046403
333047136
0.000000e+00
857.0
15
TraesCS5B01G527900
chr4D
78.296
1350
280
12
1
1343
55070103
55068760
0.000000e+00
857.0
16
TraesCS5B01G527900
chr4D
78.541
233
50
0
3
235
9062057
9061825
1.130000e-33
154.0
17
TraesCS5B01G527900
chr1D
81.996
1022
163
17
333
1343
335361088
335362099
0.000000e+00
848.0
18
TraesCS5B01G527900
chr1D
89.313
524
38
7
1590
2112
163152015
163152521
1.970000e-180
641.0
19
TraesCS5B01G527900
chr1D
80.156
514
71
21
1703
2188
314506190
314505680
2.880000e-94
355.0
20
TraesCS5B01G527900
chr1D
85.328
259
22
2
2111
2356
163152615
163152870
1.080000e-63
254.0
21
TraesCS5B01G527900
chr7D
87.270
707
76
7
1590
2295
166651519
166650826
0.000000e+00
795.0
22
TraesCS5B01G527900
chr2D
82.377
488
60
15
1875
2356
210904010
210904477
3.650000e-108
401.0
23
TraesCS5B01G527900
chr6D
80.045
441
69
13
1593
2020
176916617
176916183
2.270000e-80
309.0
24
TraesCS5B01G527900
chr6D
85.121
289
41
2
1590
1877
36327904
36328191
6.370000e-76
294.0
BLAST Results - HSPs grouped
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the
BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are
purely upstream or downstream may be removed if they don't overlap both primers.
query
scaffold
start
end
length
rev.comp
avg.bitscore
max.bitscore
avg.percent.identical
query.start
query.end
num_hsp
groupid
homo_length
0
TraesCS5B01G527900
chr5B
686778235
686780590
2355
False
2209.3
4351
98.7180
1
2356
2
chr5B.!!$F2
2355
1
TraesCS5B01G527900
chr5B
401663629
401664971
1342
True
2193.0
2193
96.1310
1
1343
1
chr5B.!!$R1
1342
2
TraesCS5B01G527900
chr5B
433333569
433334333
764
False
894.0
894
87.9490
1590
2356
1
chr5B.!!$F1
766
3
TraesCS5B01G527900
chr3B
81301086
81302430
1344
False
2233.0
2233
96.6570
1
1343
1
chr3B.!!$F1
1342
4
TraesCS5B01G527900
chr3B
399502183
399502878
695
False
536.0
536
80.8450
641
1341
1
chr3B.!!$F2
700
5
TraesCS5B01G527900
chr2B
247561315
247562655
1340
True
1808.0
1808
90.9970
1
1343
1
chr2B.!!$R1
1342
6
TraesCS5B01G527900
chr2A
771798319
771799654
1335
True
1620.0
1620
88.5560
6
1341
1
chr2A.!!$R1
1335
7
TraesCS5B01G527900
chr6B
49987572
49988903
1331
False
1406.0
1406
85.7670
1
1343
1
chr6B.!!$F1
1342
8
TraesCS5B01G527900
chr6B
630868481
630871218
2737
True
612.0
632
83.9785
1
1283
2
chr6B.!!$R1
1282
9
TraesCS5B01G527900
chr4B
415968359
415969123
764
False
605.8
1144
95.5235
1536
2356
2
chr4B.!!$F1
820
10
TraesCS5B01G527900
chr1A
577397881
577398653
772
False
1018.0
1018
90.6770
1590
2356
1
chr1A.!!$F1
766
11
TraesCS5B01G527900
chr7A
333046403
333047136
733
False
857.0
857
87.9840
1622
2356
1
chr7A.!!$F1
734
12
TraesCS5B01G527900
chr4D
55068760
55070103
1343
True
857.0
857
78.2960
1
1343
1
chr4D.!!$R2
1342
13
TraesCS5B01G527900
chr1D
335361088
335362099
1011
False
848.0
848
81.9960
333
1343
1
chr1D.!!$F1
1010
14
TraesCS5B01G527900
chr1D
163152015
163152870
855
False
447.5
641
87.3205
1590
2356
2
chr1D.!!$F2
766
15
TraesCS5B01G527900
chr1D
314505680
314506190
510
True
355.0
355
80.1560
1703
2188
1
chr1D.!!$R1
485
16
TraesCS5B01G527900
chr7D
166650826
166651519
693
True
795.0
795
87.2700
1590
2295
1
chr7D.!!$R1
705
AutoCloner calculated primer pairs
These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3),
whilst remaining within the specified product range where possible.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
583
585
0.828762
TGCTCAACCTGCTGGCAAAT
60.829
50.0
9.95
0.0
36.63
2.32
F
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
1473
2936
0.03467
ATGGGAGAACTGGCTGCTTC
60.035
55.0
0.0
0.0
0.0
3.86
R
All possible primers
Listed here are all possible primers based on the multiple sequence alignment and SNPs generated
previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work
during PCR or sequencing,
these could be used as alternatives.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
103
105
3.269178
GGATGAACAAAGGCTGAGAGAG
58.731
50.000
0.00
0.00
0.00
3.20
164
166
2.353406
CGTACTTCACCGAGGAATGGTT
60.353
50.000
0.00
0.00
37.72
3.67
232
234
3.680620
GAGTGCATACCGGCTGGCA
62.681
63.158
12.89
5.77
39.70
4.92
262
264
1.676635
CGTACCGGAGAGGACACCA
60.677
63.158
9.46
0.00
45.00
4.17
270
272
1.816863
GAGAGGACACCAGCGACCAA
61.817
60.000
0.00
0.00
0.00
3.67
409
411
3.501828
GCAAACACCATCGGCATATATCA
59.498
43.478
0.00
0.00
0.00
2.15
520
522
5.450965
GCAACAAATGAGGATGGTATGGAAG
60.451
44.000
0.00
0.00
0.00
3.46
583
585
0.828762
TGCTCAACCTGCTGGCAAAT
60.829
50.000
9.95
0.00
36.63
2.32
882
2342
5.065859
CGGTTGATGGTGCTTATTCACATAA
59.934
40.000
0.00
0.00
38.66
1.90
1069
2530
1.202891
TCCAGTCGGACTCTTCTGTCA
60.203
52.381
7.89
0.00
35.91
3.58
1358
2821
3.904800
AAAAAGGGGTGGTTTTGACTG
57.095
42.857
0.00
0.00
0.00
3.51
1359
2822
2.838637
AAAGGGGTGGTTTTGACTGA
57.161
45.000
0.00
0.00
0.00
3.41
1360
2823
3.328535
AAAGGGGTGGTTTTGACTGAT
57.671
42.857
0.00
0.00
0.00
2.90
1361
2824
2.586648
AGGGGTGGTTTTGACTGATC
57.413
50.000
0.00
0.00
0.00
2.92
1362
2825
1.780309
AGGGGTGGTTTTGACTGATCA
59.220
47.619
0.00
0.00
0.00
2.92
1363
2826
2.379907
AGGGGTGGTTTTGACTGATCAT
59.620
45.455
0.00
0.00
33.85
2.45
1364
2827
2.493278
GGGGTGGTTTTGACTGATCATG
59.507
50.000
0.00
0.00
33.85
3.07
1365
2828
3.157087
GGGTGGTTTTGACTGATCATGT
58.843
45.455
0.00
0.00
33.85
3.21
1366
2829
3.573967
GGGTGGTTTTGACTGATCATGTT
59.426
43.478
0.00
0.00
33.85
2.71
1367
2830
4.549458
GGTGGTTTTGACTGATCATGTTG
58.451
43.478
0.00
0.00
33.85
3.33
1368
2831
4.037923
GGTGGTTTTGACTGATCATGTTGT
59.962
41.667
0.00
0.00
33.85
3.32
1369
2832
5.451798
GGTGGTTTTGACTGATCATGTTGTT
60.452
40.000
0.00
0.00
33.85
2.83
1370
2833
5.459762
GTGGTTTTGACTGATCATGTTGTTG
59.540
40.000
0.00
0.00
33.85
3.33
1371
2834
4.445385
GGTTTTGACTGATCATGTTGTTGC
59.555
41.667
0.00
0.00
33.85
4.17
1372
2835
3.921119
TTGACTGATCATGTTGTTGCC
57.079
42.857
0.00
0.00
33.85
4.52
1373
2836
3.144657
TGACTGATCATGTTGTTGCCT
57.855
42.857
0.00
0.00
0.00
4.75
1374
2837
3.489355
TGACTGATCATGTTGTTGCCTT
58.511
40.909
0.00
0.00
0.00
4.35
1375
2838
3.503363
TGACTGATCATGTTGTTGCCTTC
59.497
43.478
0.00
0.00
0.00
3.46
1376
2839
3.489355
ACTGATCATGTTGTTGCCTTCA
58.511
40.909
0.00
0.00
0.00
3.02
1377
2840
3.504906
ACTGATCATGTTGTTGCCTTCAG
59.495
43.478
0.00
0.00
0.00
3.02
1378
2841
3.489355
TGATCATGTTGTTGCCTTCAGT
58.511
40.909
0.00
0.00
0.00
3.41
1379
2842
3.253921
TGATCATGTTGTTGCCTTCAGTG
59.746
43.478
0.00
0.00
0.00
3.66
1380
2843
2.653726
TCATGTTGTTGCCTTCAGTGT
58.346
42.857
0.00
0.00
0.00
3.55
1381
2844
3.023119
TCATGTTGTTGCCTTCAGTGTT
58.977
40.909
0.00
0.00
0.00
3.32
1382
2845
4.203226
TCATGTTGTTGCCTTCAGTGTTA
58.797
39.130
0.00
0.00
0.00
2.41
1383
2846
4.036262
TCATGTTGTTGCCTTCAGTGTTAC
59.964
41.667
0.00
0.00
0.00
2.50
1384
2847
3.348119
TGTTGTTGCCTTCAGTGTTACA
58.652
40.909
0.00
0.00
0.00
2.41
1385
2848
3.951037
TGTTGTTGCCTTCAGTGTTACAT
59.049
39.130
0.00
0.00
0.00
2.29
1386
2849
5.126779
TGTTGTTGCCTTCAGTGTTACATA
58.873
37.500
0.00
0.00
0.00
2.29
1387
2850
5.008217
TGTTGTTGCCTTCAGTGTTACATAC
59.992
40.000
0.00
0.00
0.00
2.39
1388
2851
4.709250
TGTTGCCTTCAGTGTTACATACA
58.291
39.130
0.00
0.00
0.00
2.29
1389
2852
5.312895
TGTTGCCTTCAGTGTTACATACAT
58.687
37.500
0.00
0.00
39.39
2.29
1390
2853
5.411361
TGTTGCCTTCAGTGTTACATACATC
59.589
40.000
0.00
0.00
39.39
3.06
1391
2854
4.513442
TGCCTTCAGTGTTACATACATCC
58.487
43.478
0.00
0.00
39.39
3.51
1392
2855
4.225042
TGCCTTCAGTGTTACATACATCCT
59.775
41.667
0.00
0.00
39.39
3.24
1393
2856
5.186198
GCCTTCAGTGTTACATACATCCTT
58.814
41.667
0.00
0.00
39.39
3.36
1394
2857
5.648092
GCCTTCAGTGTTACATACATCCTTT
59.352
40.000
0.00
0.00
39.39
3.11
1395
2858
6.403636
GCCTTCAGTGTTACATACATCCTTTG
60.404
42.308
0.00
0.00
39.39
2.77
1396
2859
6.655003
CCTTCAGTGTTACATACATCCTTTGT
59.345
38.462
0.00
0.00
39.39
2.83
1397
2860
7.174946
CCTTCAGTGTTACATACATCCTTTGTT
59.825
37.037
0.00
0.00
39.39
2.83
1398
2861
8.458573
TTCAGTGTTACATACATCCTTTGTTT
57.541
30.769
0.00
0.00
39.39
2.83
1399
2862
8.094798
TCAGTGTTACATACATCCTTTGTTTC
57.905
34.615
0.00
0.00
39.39
2.78
1400
2863
7.936847
TCAGTGTTACATACATCCTTTGTTTCT
59.063
33.333
0.00
0.00
39.39
2.52
1401
2864
9.214957
CAGTGTTACATACATCCTTTGTTTCTA
57.785
33.333
0.00
0.00
39.39
2.10
1402
2865
9.787435
AGTGTTACATACATCCTTTGTTTCTAA
57.213
29.630
0.00
0.00
39.39
2.10
1412
2875
9.893305
ACATCCTTTGTTTCTAAAAATAAGACG
57.107
29.630
0.00
0.00
33.74
4.18
1413
2876
9.893305
CATCCTTTGTTTCTAAAAATAAGACGT
57.107
29.630
0.00
0.00
28.84
4.34
1419
2882
8.342725
TGTTTCTAAAAATAAGACGTTTTGGC
57.657
30.769
0.83
0.00
0.00
4.52
1420
2883
7.974501
TGTTTCTAAAAATAAGACGTTTTGGCA
59.025
29.630
0.83
0.00
0.00
4.92
1421
2884
8.476925
GTTTCTAAAAATAAGACGTTTTGGCAG
58.523
33.333
0.83
0.00
0.00
4.85
1422
2885
7.266922
TCTAAAAATAAGACGTTTTGGCAGT
57.733
32.000
0.83
0.00
0.00
4.40
1423
2886
7.708998
TCTAAAAATAAGACGTTTTGGCAGTT
58.291
30.769
0.83
0.00
0.00
3.16
1424
2887
6.822073
AAAAATAAGACGTTTTGGCAGTTC
57.178
33.333
0.83
0.00
0.00
3.01
1425
2888
5.508200
AAATAAGACGTTTTGGCAGTTCA
57.492
34.783
0.83
0.00
0.00
3.18
1426
2889
5.508200
AATAAGACGTTTTGGCAGTTCAA
57.492
34.783
0.83
0.00
0.00
2.69
1427
2890
5.705609
ATAAGACGTTTTGGCAGTTCAAT
57.294
34.783
0.83
0.00
0.00
2.57
1428
2891
4.385358
AAGACGTTTTGGCAGTTCAATT
57.615
36.364
0.00
0.00
0.00
2.32
1429
2892
4.385358
AGACGTTTTGGCAGTTCAATTT
57.615
36.364
0.00
0.00
0.00
1.82
1430
2893
4.111916
AGACGTTTTGGCAGTTCAATTTG
58.888
39.130
0.00
0.00
0.00
2.32
1431
2894
4.109050
GACGTTTTGGCAGTTCAATTTGA
58.891
39.130
0.00
0.00
0.00
2.69
1432
2895
3.862845
ACGTTTTGGCAGTTCAATTTGAC
59.137
39.130
0.00
0.00
0.00
3.18
1433
2896
3.862267
CGTTTTGGCAGTTCAATTTGACA
59.138
39.130
0.00
0.00
0.00
3.58
1434
2897
4.026640
CGTTTTGGCAGTTCAATTTGACAG
60.027
41.667
0.00
0.00
33.07
3.51
1435
2898
4.998671
TTTGGCAGTTCAATTTGACAGA
57.001
36.364
0.00
0.00
33.07
3.41
1436
2899
4.572985
TTGGCAGTTCAATTTGACAGAG
57.427
40.909
0.00
0.00
33.07
3.35
1437
2900
2.886523
TGGCAGTTCAATTTGACAGAGG
59.113
45.455
0.00
0.00
0.00
3.69
1438
2901
2.887152
GGCAGTTCAATTTGACAGAGGT
59.113
45.455
0.00
0.00
0.00
3.85
1439
2902
4.072131
GGCAGTTCAATTTGACAGAGGTA
58.928
43.478
0.00
0.00
0.00
3.08
1440
2903
4.154918
GGCAGTTCAATTTGACAGAGGTAG
59.845
45.833
0.00
0.00
0.00
3.18
1441
2904
4.757149
GCAGTTCAATTTGACAGAGGTAGT
59.243
41.667
0.00
0.00
0.00
2.73
1442
2905
5.932303
GCAGTTCAATTTGACAGAGGTAGTA
59.068
40.000
0.00
0.00
0.00
1.82
1443
2906
6.595716
GCAGTTCAATTTGACAGAGGTAGTAT
59.404
38.462
0.00
0.00
0.00
2.12
1444
2907
7.119846
GCAGTTCAATTTGACAGAGGTAGTATT
59.880
37.037
0.00
0.00
0.00
1.89
1445
2908
9.003658
CAGTTCAATTTGACAGAGGTAGTATTT
57.996
33.333
0.00
0.00
0.00
1.40
1446
2909
9.574516
AGTTCAATTTGACAGAGGTAGTATTTT
57.425
29.630
0.00
0.00
0.00
1.82
1470
2933
7.496529
TTTTTCTAGAGAACAGAACACCATG
57.503
36.000
0.00
0.00
31.86
3.66
1471
2934
4.193826
TCTAGAGAACAGAACACCATGC
57.806
45.455
0.00
0.00
0.00
4.06
1472
2935
2.936919
AGAGAACAGAACACCATGCA
57.063
45.000
0.00
0.00
0.00
3.96
1473
2936
2.775890
AGAGAACAGAACACCATGCAG
58.224
47.619
0.00
0.00
0.00
4.41
1474
2937
2.369860
AGAGAACAGAACACCATGCAGA
59.630
45.455
0.00
0.00
0.00
4.26
1475
2938
3.141398
GAGAACAGAACACCATGCAGAA
58.859
45.455
0.00
0.00
0.00
3.02
1476
2939
3.144506
AGAACAGAACACCATGCAGAAG
58.855
45.455
0.00
0.00
0.00
2.85
1477
2940
1.242076
ACAGAACACCATGCAGAAGC
58.758
50.000
0.00
0.00
42.57
3.86
1487
2950
4.393693
GCAGAAGCAGCCAGTTCT
57.606
55.556
0.00
0.00
41.58
3.01
1488
2951
2.169842
GCAGAAGCAGCCAGTTCTC
58.830
57.895
0.00
0.00
41.58
2.87
1489
2952
1.304509
GCAGAAGCAGCCAGTTCTCC
61.305
60.000
0.00
0.00
41.58
3.71
1490
2953
0.676151
CAGAAGCAGCCAGTTCTCCC
60.676
60.000
0.00
0.00
30.31
4.30
1491
2954
1.130054
AGAAGCAGCCAGTTCTCCCA
61.130
55.000
0.00
0.00
0.00
4.37
1492
2955
0.034670
GAAGCAGCCAGTTCTCCCAT
60.035
55.000
0.00
0.00
0.00
4.00
1493
2956
0.323178
AAGCAGCCAGTTCTCCCATG
60.323
55.000
0.00
0.00
0.00
3.66
1494
2957
1.001641
GCAGCCAGTTCTCCCATGT
60.002
57.895
0.00
0.00
0.00
3.21
1495
2958
1.310933
GCAGCCAGTTCTCCCATGTG
61.311
60.000
0.00
0.00
0.00
3.21
1496
2959
0.325933
CAGCCAGTTCTCCCATGTGA
59.674
55.000
0.00
0.00
0.00
3.58
1497
2960
1.067295
AGCCAGTTCTCCCATGTGAA
58.933
50.000
0.00
0.00
0.00
3.18
1498
2961
1.425066
AGCCAGTTCTCCCATGTGAAA
59.575
47.619
0.00
0.00
0.00
2.69
1499
2962
2.158475
AGCCAGTTCTCCCATGTGAAAA
60.158
45.455
0.00
0.00
0.00
2.29
1500
2963
2.229784
GCCAGTTCTCCCATGTGAAAAG
59.770
50.000
0.00
0.00
0.00
2.27
1501
2964
2.229784
CCAGTTCTCCCATGTGAAAAGC
59.770
50.000
0.00
0.00
0.00
3.51
1502
2965
2.229784
CAGTTCTCCCATGTGAAAAGCC
59.770
50.000
0.00
0.00
0.00
4.35
1503
2966
2.158475
AGTTCTCCCATGTGAAAAGCCA
60.158
45.455
0.00
0.00
0.00
4.75
1504
2967
2.627699
GTTCTCCCATGTGAAAAGCCAA
59.372
45.455
0.00
0.00
0.00
4.52
1505
2968
3.173953
TCTCCCATGTGAAAAGCCAAT
57.826
42.857
0.00
0.00
0.00
3.16
1506
2969
2.827322
TCTCCCATGTGAAAAGCCAATG
59.173
45.455
0.00
0.00
0.00
2.82
1507
2970
1.275856
TCCCATGTGAAAAGCCAATGC
59.724
47.619
0.00
0.00
37.95
3.56
1508
2971
1.002201
CCCATGTGAAAAGCCAATGCA
59.998
47.619
0.00
0.00
41.13
3.96
1509
2972
2.070783
CCATGTGAAAAGCCAATGCAC
58.929
47.619
0.00
0.00
41.13
4.57
1510
2973
1.722464
CATGTGAAAAGCCAATGCACG
59.278
47.619
0.00
0.00
41.13
5.34
1511
2974
0.597118
TGTGAAAAGCCAATGCACGC
60.597
50.000
0.00
0.00
41.13
5.34
1512
2975
0.597118
GTGAAAAGCCAATGCACGCA
60.597
50.000
0.00
0.00
41.13
5.24
1513
2976
0.318869
TGAAAAGCCAATGCACGCAG
60.319
50.000
0.00
0.00
41.13
5.18
1514
2977
1.620413
GAAAAGCCAATGCACGCAGC
61.620
55.000
0.00
0.00
45.96
5.25
1523
2986
3.256936
GCACGCAGCATCTTCACA
58.743
55.556
0.00
0.00
44.79
3.58
1524
2987
1.575922
GCACGCAGCATCTTCACAA
59.424
52.632
0.00
0.00
44.79
3.33
1525
2988
0.040157
GCACGCAGCATCTTCACAAA
60.040
50.000
0.00
0.00
44.79
2.83
1526
2989
1.959747
CACGCAGCATCTTCACAAAG
58.040
50.000
0.00
0.00
0.00
2.77
1527
2990
1.265095
CACGCAGCATCTTCACAAAGT
59.735
47.619
0.00
0.00
33.95
2.66
1528
2991
2.480037
CACGCAGCATCTTCACAAAGTA
59.520
45.455
0.00
0.00
33.95
2.24
1529
2992
2.738846
ACGCAGCATCTTCACAAAGTAG
59.261
45.455
0.00
0.00
33.95
2.57
1530
2993
2.738846
CGCAGCATCTTCACAAAGTAGT
59.261
45.455
0.00
0.00
33.95
2.73
1531
2994
3.926527
CGCAGCATCTTCACAAAGTAGTA
59.073
43.478
0.00
0.00
33.95
1.82
1532
2995
4.388773
CGCAGCATCTTCACAAAGTAGTAA
59.611
41.667
0.00
0.00
33.95
2.24
1533
2996
5.107104
CGCAGCATCTTCACAAAGTAGTAAA
60.107
40.000
0.00
0.00
33.95
2.01
1534
2997
6.565811
CGCAGCATCTTCACAAAGTAGTAAAA
60.566
38.462
0.00
0.00
33.95
1.52
1535
2998
7.138736
GCAGCATCTTCACAAAGTAGTAAAAA
58.861
34.615
0.00
0.00
33.95
1.94
1568
3031
9.755064
ACTGACTAAAAATTTCGACAAATATCG
57.245
29.630
0.00
0.00
43.63
2.92
1569
3032
8.595781
TGACTAAAAATTTCGACAAATATCGC
57.404
30.769
0.00
0.00
41.97
4.58
1570
3033
7.424167
TGACTAAAAATTTCGACAAATATCGCG
59.576
33.333
0.00
0.00
41.97
5.87
1571
3034
4.991758
AAAATTTCGACAAATATCGCGC
57.008
36.364
0.00
0.00
41.97
6.86
1572
3035
3.666883
AATTTCGACAAATATCGCGCA
57.333
38.095
8.75
0.00
41.97
6.09
1573
3036
2.429213
TTTCGACAAATATCGCGCAC
57.571
45.000
8.75
0.00
41.97
5.34
1574
3037
0.648441
TTCGACAAATATCGCGCACC
59.352
50.000
8.75
0.00
41.97
5.01
1575
3038
0.458716
TCGACAAATATCGCGCACCA
60.459
50.000
8.75
0.00
41.97
4.17
1576
3039
0.043053
CGACAAATATCGCGCACCAG
60.043
55.000
8.75
0.00
34.90
4.00
1577
3040
0.304705
GACAAATATCGCGCACCAGG
59.695
55.000
8.75
0.00
0.00
4.45
1578
3041
0.107897
ACAAATATCGCGCACCAGGA
60.108
50.000
8.75
0.00
0.00
3.86
1579
3042
1.229428
CAAATATCGCGCACCAGGAT
58.771
50.000
8.75
3.86
0.00
3.24
1580
3043
1.603802
CAAATATCGCGCACCAGGATT
59.396
47.619
8.75
0.00
0.00
3.01
1581
3044
1.967319
AATATCGCGCACCAGGATTT
58.033
45.000
8.75
0.00
0.00
2.17
1582
3045
1.512926
ATATCGCGCACCAGGATTTC
58.487
50.000
8.75
0.00
0.00
2.17
1583
3046
0.464036
TATCGCGCACCAGGATTTCT
59.536
50.000
8.75
0.00
0.00
2.52
1584
3047
0.811616
ATCGCGCACCAGGATTTCTC
60.812
55.000
8.75
0.00
0.00
2.87
1585
3048
1.741401
CGCGCACCAGGATTTCTCA
60.741
57.895
8.75
0.00
0.00
3.27
1586
3049
1.091771
CGCGCACCAGGATTTCTCAT
61.092
55.000
8.75
0.00
0.00
2.90
1587
3050
0.379669
GCGCACCAGGATTTCTCATG
59.620
55.000
0.30
0.00
32.98
3.07
1588
3051
1.742761
CGCACCAGGATTTCTCATGT
58.257
50.000
0.00
0.00
31.23
3.21
1666
3129
1.565156
ATCGCGCACGTCAATGTGTT
61.565
50.000
8.75
0.00
41.94
3.32
1977
3449
3.455152
GCCCCTTGCGTTTCCTTT
58.545
55.556
0.00
0.00
0.00
3.11
2160
3762
9.832445
TGAGTTTGCCTAATAGTATAAAGGAAG
57.168
33.333
13.34
0.00
31.36
3.46
2207
3810
1.663695
ACATATTACCTGTGCGGCAC
58.336
50.000
25.55
25.55
35.61
5.01
2271
3877
1.276622
GAGAGGCAGGTGGTTAGGAA
58.723
55.000
0.00
0.00
0.00
3.36
2280
3886
1.536907
TGGTTAGGAAGCCGGACCA
60.537
57.895
5.05
4.94
39.63
4.02
2303
3922
3.269347
CCGGCGCGGGTTGATAAG
61.269
66.667
24.78
0.00
44.15
1.73
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
103
105
3.615224
ACATCCATGTCCCAAAAATGC
57.385
42.857
0.00
0.00
35.87
3.56
262
264
2.184167
CGGGTTGTTGTTGGTCGCT
61.184
57.895
0.00
0.00
0.00
4.93
409
411
0.846693
AGGGGCAACTGTCTCTTGTT
59.153
50.000
0.00
0.00
0.00
2.83
486
488
1.333308
TCATTTGTTGCCATATCGCCG
59.667
47.619
0.00
0.00
0.00
6.46
520
522
2.793954
AGGAGTTCCTGGCTTGGTAGC
61.794
57.143
0.00
0.00
46.55
3.58
583
585
5.045651
ACAATCCCTCATGTACTCATCACAA
60.046
40.000
0.00
0.00
31.15
3.33
687
2144
3.923017
AGCTGCACAAAAAGGATACAC
57.077
42.857
1.02
0.00
41.41
2.90
851
2311
1.676968
CACCATCAACCGACAGGGA
59.323
57.895
0.00
0.00
43.47
4.20
882
2342
2.203167
CCGCAGCTGAGCCATCAT
60.203
61.111
20.43
0.00
34.12
2.45
947
2408
8.909708
TTTGTTGCAGTTAAATATGTATCTGC
57.090
30.769
21.79
21.79
42.97
4.26
1069
2530
4.609098
CGAGAGGGCAGATAGGGT
57.391
61.111
0.00
0.00
0.00
4.34
1263
2726
0.241481
GAGATCCTCGATACACGGCC
59.759
60.000
0.00
0.00
42.82
6.13
1343
2806
2.286365
TGATCAGTCAAAACCACCCC
57.714
50.000
0.00
0.00
0.00
4.95
1344
2807
3.157087
ACATGATCAGTCAAAACCACCC
58.843
45.455
0.00
0.00
38.01
4.61
1345
2808
4.037923
ACAACATGATCAGTCAAAACCACC
59.962
41.667
0.00
0.00
38.01
4.61
1346
2809
5.186996
ACAACATGATCAGTCAAAACCAC
57.813
39.130
0.00
0.00
38.01
4.16
1347
2810
5.590145
CAACAACATGATCAGTCAAAACCA
58.410
37.500
0.00
0.00
38.01
3.67
1348
2811
4.445385
GCAACAACATGATCAGTCAAAACC
59.555
41.667
0.00
0.00
38.01
3.27
1349
2812
4.445385
GGCAACAACATGATCAGTCAAAAC
59.555
41.667
0.00
0.00
38.01
2.43
1350
2813
4.341806
AGGCAACAACATGATCAGTCAAAA
59.658
37.500
0.00
0.00
37.09
2.44
1351
2814
3.890756
AGGCAACAACATGATCAGTCAAA
59.109
39.130
0.00
0.00
37.09
2.69
1352
2815
3.489355
AGGCAACAACATGATCAGTCAA
58.511
40.909
0.00
0.00
37.09
3.18
1353
2816
3.144657
AGGCAACAACATGATCAGTCA
57.855
42.857
0.00
0.00
37.77
3.41
1354
2817
3.503363
TGAAGGCAACAACATGATCAGTC
59.497
43.478
0.00
0.00
41.41
3.51
1355
2818
3.489355
TGAAGGCAACAACATGATCAGT
58.511
40.909
0.00
0.00
41.41
3.41
1356
2819
3.504906
ACTGAAGGCAACAACATGATCAG
59.495
43.478
0.00
0.00
41.41
2.90
1357
2820
3.253921
CACTGAAGGCAACAACATGATCA
59.746
43.478
0.00
0.00
41.41
2.92
1358
2821
3.254166
ACACTGAAGGCAACAACATGATC
59.746
43.478
0.00
0.00
41.41
2.92
1359
2822
3.225104
ACACTGAAGGCAACAACATGAT
58.775
40.909
0.00
0.00
41.41
2.45
1360
2823
2.653726
ACACTGAAGGCAACAACATGA
58.346
42.857
0.00
0.00
41.41
3.07
1361
2824
3.441496
AACACTGAAGGCAACAACATG
57.559
42.857
0.00
0.00
41.41
3.21
1362
2825
3.951037
TGTAACACTGAAGGCAACAACAT
59.049
39.130
0.00
0.00
41.41
2.71
1363
2826
3.348119
TGTAACACTGAAGGCAACAACA
58.652
40.909
0.00
0.00
41.41
3.33
1364
2827
4.568152
ATGTAACACTGAAGGCAACAAC
57.432
40.909
0.00
0.00
41.41
3.32
1365
2828
5.126779
TGTATGTAACACTGAAGGCAACAA
58.873
37.500
0.00
0.00
32.87
2.83
1366
2829
4.709250
TGTATGTAACACTGAAGGCAACA
58.291
39.130
0.00
0.00
32.87
3.33
1367
2830
5.163754
GGATGTATGTAACACTGAAGGCAAC
60.164
44.000
0.00
0.00
42.09
4.17
1368
2831
4.941263
GGATGTATGTAACACTGAAGGCAA
59.059
41.667
0.00
0.00
42.09
4.52
1369
2832
4.225042
AGGATGTATGTAACACTGAAGGCA
59.775
41.667
0.00
0.00
42.09
4.75
1370
2833
4.770795
AGGATGTATGTAACACTGAAGGC
58.229
43.478
0.00
0.00
42.09
4.35
1371
2834
6.655003
ACAAAGGATGTATGTAACACTGAAGG
59.345
38.462
0.00
0.00
42.09
3.46
1372
2835
7.672983
ACAAAGGATGTATGTAACACTGAAG
57.327
36.000
0.00
0.00
42.09
3.02
1373
2836
8.458573
AAACAAAGGATGTATGTAACACTGAA
57.541
30.769
0.00
0.00
42.99
3.02
1374
2837
7.936847
AGAAACAAAGGATGTATGTAACACTGA
59.063
33.333
0.00
0.00
42.99
3.41
1375
2838
8.099364
AGAAACAAAGGATGTATGTAACACTG
57.901
34.615
0.00
0.00
42.99
3.66
1376
2839
9.787435
TTAGAAACAAAGGATGTATGTAACACT
57.213
29.630
0.00
0.00
42.99
3.55
1386
2849
9.893305
CGTCTTATTTTTAGAAACAAAGGATGT
57.107
29.630
4.00
0.00
46.82
3.06
1387
2850
9.893305
ACGTCTTATTTTTAGAAACAAAGGATG
57.107
29.630
0.00
0.00
0.00
3.51
1393
2856
8.809478
GCCAAAACGTCTTATTTTTAGAAACAA
58.191
29.630
0.00
0.00
0.00
2.83
1394
2857
7.974501
TGCCAAAACGTCTTATTTTTAGAAACA
59.025
29.630
0.00
0.00
0.00
2.83
1395
2858
8.342725
TGCCAAAACGTCTTATTTTTAGAAAC
57.657
30.769
0.00
0.00
0.00
2.78
1396
2859
8.192110
ACTGCCAAAACGTCTTATTTTTAGAAA
58.808
29.630
0.00
0.00
0.00
2.52
1397
2860
7.708998
ACTGCCAAAACGTCTTATTTTTAGAA
58.291
30.769
0.00
0.00
0.00
2.10
1398
2861
7.266922
ACTGCCAAAACGTCTTATTTTTAGA
57.733
32.000
0.00
0.00
0.00
2.10
1399
2862
7.646130
TGAACTGCCAAAACGTCTTATTTTTAG
59.354
33.333
0.00
0.00
0.00
1.85
1400
2863
7.481642
TGAACTGCCAAAACGTCTTATTTTTA
58.518
30.769
0.00
0.00
0.00
1.52
1401
2864
6.334202
TGAACTGCCAAAACGTCTTATTTTT
58.666
32.000
0.00
0.00
0.00
1.94
1402
2865
5.897050
TGAACTGCCAAAACGTCTTATTTT
58.103
33.333
0.00
0.00
0.00
1.82
1403
2866
5.508200
TGAACTGCCAAAACGTCTTATTT
57.492
34.783
0.00
0.00
0.00
1.40
1404
2867
5.508200
TTGAACTGCCAAAACGTCTTATT
57.492
34.783
0.00
0.00
0.00
1.40
1405
2868
5.705609
ATTGAACTGCCAAAACGTCTTAT
57.294
34.783
0.00
0.00
0.00
1.73
1406
2869
5.508200
AATTGAACTGCCAAAACGTCTTA
57.492
34.783
0.00
0.00
0.00
2.10
1407
2870
4.385358
AATTGAACTGCCAAAACGTCTT
57.615
36.364
0.00
0.00
0.00
3.01
1408
2871
4.111916
CAAATTGAACTGCCAAAACGTCT
58.888
39.130
0.00
0.00
0.00
4.18
1409
2872
4.026886
GTCAAATTGAACTGCCAAAACGTC
60.027
41.667
0.00
0.00
0.00
4.34
1410
2873
3.862845
GTCAAATTGAACTGCCAAAACGT
59.137
39.130
0.00
0.00
0.00
3.99
1411
2874
3.862267
TGTCAAATTGAACTGCCAAAACG
59.138
39.130
0.00
0.00
0.00
3.60
1412
2875
5.108517
TCTGTCAAATTGAACTGCCAAAAC
58.891
37.500
0.00
0.00
0.00
2.43
1413
2876
5.336150
TCTGTCAAATTGAACTGCCAAAA
57.664
34.783
0.00
0.00
0.00
2.44
1414
2877
4.202141
CCTCTGTCAAATTGAACTGCCAAA
60.202
41.667
0.00
0.00
0.00
3.28
1415
2878
3.318839
CCTCTGTCAAATTGAACTGCCAA
59.681
43.478
0.00
0.00
0.00
4.52
1416
2879
2.886523
CCTCTGTCAAATTGAACTGCCA
59.113
45.455
0.00
0.00
0.00
4.92
1417
2880
2.887152
ACCTCTGTCAAATTGAACTGCC
59.113
45.455
0.00
0.00
0.00
4.85
1418
2881
4.757149
ACTACCTCTGTCAAATTGAACTGC
59.243
41.667
0.00
0.00
0.00
4.40
1419
2882
8.553459
AATACTACCTCTGTCAAATTGAACTG
57.447
34.615
0.00
0.00
0.00
3.16
1420
2883
9.574516
AAAATACTACCTCTGTCAAATTGAACT
57.425
29.630
0.00
0.00
0.00
3.01
1446
2909
6.017109
GCATGGTGTTCTGTTCTCTAGAAAAA
60.017
38.462
0.00
0.00
36.06
1.94
1447
2910
5.470098
GCATGGTGTTCTGTTCTCTAGAAAA
59.530
40.000
0.00
0.00
36.06
2.29
1448
2911
4.997395
GCATGGTGTTCTGTTCTCTAGAAA
59.003
41.667
0.00
0.00
36.06
2.52
1449
2912
4.040339
TGCATGGTGTTCTGTTCTCTAGAA
59.960
41.667
0.00
0.00
32.08
2.10
1450
2913
3.578282
TGCATGGTGTTCTGTTCTCTAGA
59.422
43.478
0.00
0.00
0.00
2.43
1451
2914
3.930336
TGCATGGTGTTCTGTTCTCTAG
58.070
45.455
0.00
0.00
0.00
2.43
1452
2915
3.578282
TCTGCATGGTGTTCTGTTCTCTA
59.422
43.478
0.00
0.00
0.00
2.43
1453
2916
2.369860
TCTGCATGGTGTTCTGTTCTCT
59.630
45.455
0.00
0.00
0.00
3.10
1454
2917
2.771089
TCTGCATGGTGTTCTGTTCTC
58.229
47.619
0.00
0.00
0.00
2.87
1455
2918
2.936919
TCTGCATGGTGTTCTGTTCT
57.063
45.000
0.00
0.00
0.00
3.01
1456
2919
2.351157
GCTTCTGCATGGTGTTCTGTTC
60.351
50.000
0.00
0.00
39.41
3.18
1457
2920
1.610522
GCTTCTGCATGGTGTTCTGTT
59.389
47.619
0.00
0.00
39.41
3.16
1458
2921
1.242076
GCTTCTGCATGGTGTTCTGT
58.758
50.000
0.00
0.00
39.41
3.41
1459
2922
1.241165
TGCTTCTGCATGGTGTTCTG
58.759
50.000
0.00
0.00
45.31
3.02
1460
2923
3.731716
TGCTTCTGCATGGTGTTCT
57.268
47.368
0.00
0.00
45.31
3.01
1470
2933
1.304509
GGAGAACTGGCTGCTTCTGC
61.305
60.000
7.28
6.62
40.20
4.26
1471
2934
0.676151
GGGAGAACTGGCTGCTTCTG
60.676
60.000
7.28
0.00
0.00
3.02
1472
2935
1.130054
TGGGAGAACTGGCTGCTTCT
61.130
55.000
0.00
0.45
0.00
2.85
1473
2936
0.034670
ATGGGAGAACTGGCTGCTTC
60.035
55.000
0.00
0.00
0.00
3.86
1474
2937
0.323178
CATGGGAGAACTGGCTGCTT
60.323
55.000
0.00
0.00
0.00
3.91
1475
2938
1.302285
CATGGGAGAACTGGCTGCT
59.698
57.895
0.00
0.00
0.00
4.24
1476
2939
1.001641
ACATGGGAGAACTGGCTGC
60.002
57.895
0.00
0.00
0.00
5.25
1477
2940
0.325933
TCACATGGGAGAACTGGCTG
59.674
55.000
0.00
0.00
0.00
4.85
1478
2941
1.067295
TTCACATGGGAGAACTGGCT
58.933
50.000
0.00
0.00
0.00
4.75
1479
2942
1.909700
TTTCACATGGGAGAACTGGC
58.090
50.000
0.00
0.00
0.00
4.85
1480
2943
2.229784
GCTTTTCACATGGGAGAACTGG
59.770
50.000
0.00
0.00
0.00
4.00
1481
2944
2.229784
GGCTTTTCACATGGGAGAACTG
59.770
50.000
0.00
0.00
0.00
3.16
1482
2945
2.158475
TGGCTTTTCACATGGGAGAACT
60.158
45.455
0.00
0.00
0.00
3.01
1483
2946
2.238521
TGGCTTTTCACATGGGAGAAC
58.761
47.619
0.00
0.00
0.00
3.01
1484
2947
2.673775
TGGCTTTTCACATGGGAGAA
57.326
45.000
0.00
0.00
0.00
2.87
1485
2948
2.673775
TTGGCTTTTCACATGGGAGA
57.326
45.000
0.00
0.00
0.00
3.71
1486
2949
2.675889
GCATTGGCTTTTCACATGGGAG
60.676
50.000
0.00
0.00
36.96
4.30
1487
2950
1.275856
GCATTGGCTTTTCACATGGGA
59.724
47.619
0.00
0.00
36.96
4.37
1488
2951
1.002201
TGCATTGGCTTTTCACATGGG
59.998
47.619
0.00
0.00
41.91
4.00
1489
2952
2.070783
GTGCATTGGCTTTTCACATGG
58.929
47.619
0.00
0.00
41.91
3.66
1490
2953
1.722464
CGTGCATTGGCTTTTCACATG
59.278
47.619
0.00
0.00
41.91
3.21
1491
2954
1.936203
GCGTGCATTGGCTTTTCACAT
60.936
47.619
0.00
0.00
41.91
3.21
1492
2955
0.597118
GCGTGCATTGGCTTTTCACA
60.597
50.000
0.00
0.00
41.91
3.58
1493
2956
0.597118
TGCGTGCATTGGCTTTTCAC
60.597
50.000
8.50
0.00
41.91
3.18
1494
2957
0.318869
CTGCGTGCATTGGCTTTTCA
60.319
50.000
8.50
0.00
41.91
2.69
1495
2958
1.620413
GCTGCGTGCATTGGCTTTTC
61.620
55.000
8.50
0.00
42.31
2.29
1496
2959
1.665599
GCTGCGTGCATTGGCTTTT
60.666
52.632
8.50
0.00
42.31
2.27
1497
2960
2.048877
GCTGCGTGCATTGGCTTT
60.049
55.556
8.50
0.00
42.31
3.51
1506
2969
0.040157
TTTGTGAAGATGCTGCGTGC
60.040
50.000
0.00
0.00
43.25
5.34
1507
2970
1.265095
ACTTTGTGAAGATGCTGCGTG
59.735
47.619
0.00
0.00
36.69
5.34
1508
2971
1.597742
ACTTTGTGAAGATGCTGCGT
58.402
45.000
0.00
0.00
36.69
5.24
1509
2972
2.738846
ACTACTTTGTGAAGATGCTGCG
59.261
45.455
0.00
0.00
36.69
5.18
1510
2973
5.862924
TTACTACTTTGTGAAGATGCTGC
57.137
39.130
0.00
0.00
36.69
5.25
1542
3005
9.755064
CGATATTTGTCGAAATTTTTAGTCAGT
57.245
29.630
0.00
0.00
44.06
3.41
1543
3006
8.725046
GCGATATTTGTCGAAATTTTTAGTCAG
58.275
33.333
0.64
0.00
44.06
3.51
1544
3007
7.424167
CGCGATATTTGTCGAAATTTTTAGTCA
59.576
33.333
0.00
0.00
44.06
3.41
1545
3008
7.561010
GCGCGATATTTGTCGAAATTTTTAGTC
60.561
37.037
12.10
0.00
44.06
2.59
1546
3009
6.193959
GCGCGATATTTGTCGAAATTTTTAGT
59.806
34.615
12.10
0.00
44.06
2.24
1547
3010
6.193776
TGCGCGATATTTGTCGAAATTTTTAG
59.806
34.615
12.10
0.00
44.06
1.85
1548
3011
6.022095
GTGCGCGATATTTGTCGAAATTTTTA
60.022
34.615
12.10
0.00
44.06
1.52
1549
3012
4.854291
TGCGCGATATTTGTCGAAATTTTT
59.146
33.333
12.10
0.00
44.06
1.94
1550
3013
4.262045
GTGCGCGATATTTGTCGAAATTTT
59.738
37.500
12.10
0.00
44.06
1.82
1551
3014
3.783943
GTGCGCGATATTTGTCGAAATTT
59.216
39.130
12.10
0.00
44.06
1.82
1552
3015
3.350912
GTGCGCGATATTTGTCGAAATT
58.649
40.909
12.10
0.00
44.06
1.82
1553
3016
2.286184
GGTGCGCGATATTTGTCGAAAT
60.286
45.455
12.10
0.00
44.06
2.17
1554
3017
1.061421
GGTGCGCGATATTTGTCGAAA
59.939
47.619
12.10
0.00
44.06
3.46
1555
3018
0.648441
GGTGCGCGATATTTGTCGAA
59.352
50.000
12.10
0.00
44.06
3.71
1556
3019
0.458716
TGGTGCGCGATATTTGTCGA
60.459
50.000
12.10
0.00
44.06
4.20
1557
3020
0.043053
CTGGTGCGCGATATTTGTCG
60.043
55.000
12.10
0.00
44.14
4.35
1558
3021
0.304705
CCTGGTGCGCGATATTTGTC
59.695
55.000
12.10
0.00
0.00
3.18
1559
3022
0.107897
TCCTGGTGCGCGATATTTGT
60.108
50.000
12.10
0.00
0.00
2.83
1560
3023
1.229428
ATCCTGGTGCGCGATATTTG
58.771
50.000
12.10
0.00
0.00
2.32
1561
3024
1.967319
AATCCTGGTGCGCGATATTT
58.033
45.000
12.10
0.00
0.00
1.40
1562
3025
1.873591
GAAATCCTGGTGCGCGATATT
59.126
47.619
12.10
0.00
0.00
1.28
1563
3026
1.070758
AGAAATCCTGGTGCGCGATAT
59.929
47.619
12.10
0.00
0.00
1.63
1564
3027
0.464036
AGAAATCCTGGTGCGCGATA
59.536
50.000
12.10
0.00
0.00
2.92
1565
3028
0.811616
GAGAAATCCTGGTGCGCGAT
60.812
55.000
12.10
0.00
0.00
4.58
1566
3029
1.447838
GAGAAATCCTGGTGCGCGA
60.448
57.895
12.10
0.00
0.00
5.87
1567
3030
1.091771
ATGAGAAATCCTGGTGCGCG
61.092
55.000
0.00
0.00
0.00
6.86
1568
3031
0.379669
CATGAGAAATCCTGGTGCGC
59.620
55.000
0.00
0.00
0.00
6.09
1569
3032
1.399440
CACATGAGAAATCCTGGTGCG
59.601
52.381
0.00
0.00
0.00
5.34
1570
3033
2.715046
TCACATGAGAAATCCTGGTGC
58.285
47.619
0.00
0.00
0.00
5.01
1571
3034
3.441572
GGTTCACATGAGAAATCCTGGTG
59.558
47.826
7.17
0.00
0.00
4.17
1572
3035
3.074390
TGGTTCACATGAGAAATCCTGGT
59.926
43.478
7.17
0.00
0.00
4.00
1573
3036
3.689347
TGGTTCACATGAGAAATCCTGG
58.311
45.455
7.17
0.00
0.00
4.45
1574
3037
3.693085
CCTGGTTCACATGAGAAATCCTG
59.307
47.826
7.17
9.14
0.00
3.86
1575
3038
3.588842
TCCTGGTTCACATGAGAAATCCT
59.411
43.478
7.17
0.00
0.00
3.24
1576
3039
3.955471
TCCTGGTTCACATGAGAAATCC
58.045
45.455
7.17
6.39
0.00
3.01
1577
3040
6.376581
AGAAATCCTGGTTCACATGAGAAATC
59.623
38.462
7.17
4.23
0.00
2.17
1578
3041
6.251471
AGAAATCCTGGTTCACATGAGAAAT
58.749
36.000
7.17
0.00
0.00
2.17
1579
3042
5.634118
AGAAATCCTGGTTCACATGAGAAA
58.366
37.500
7.17
0.00
0.00
2.52
1580
3043
5.221904
TGAGAAATCCTGGTTCACATGAGAA
60.222
40.000
0.00
0.00
0.00
2.87
1581
3044
4.286808
TGAGAAATCCTGGTTCACATGAGA
59.713
41.667
0.00
0.00
0.00
3.27
1582
3045
4.582869
TGAGAAATCCTGGTTCACATGAG
58.417
43.478
0.00
0.00
0.00
2.90
1583
3046
4.639078
TGAGAAATCCTGGTTCACATGA
57.361
40.909
0.00
0.00
0.00
3.07
1584
3047
5.706916
CTTTGAGAAATCCTGGTTCACATG
58.293
41.667
0.00
0.00
0.00
3.21
1585
3048
4.219288
GCTTTGAGAAATCCTGGTTCACAT
59.781
41.667
0.00
0.00
0.00
3.21
1586
3049
3.569701
GCTTTGAGAAATCCTGGTTCACA
59.430
43.478
0.00
0.00
0.00
3.58
1587
3050
3.823304
AGCTTTGAGAAATCCTGGTTCAC
59.177
43.478
0.00
0.00
0.00
3.18
1588
3051
4.104383
AGCTTTGAGAAATCCTGGTTCA
57.896
40.909
0.00
0.00
0.00
3.18
1666
3129
4.021544
GTGAATTTGTGGCATACCTCCAAA
60.022
41.667
0.00
0.00
39.87
3.28
1762
3227
5.050431
GGTACCAAACAATGTTTGCAATGAC
60.050
40.000
27.95
19.53
30.44
3.06
2047
3550
0.252057
TCCAAGATGACGAGGACCCA
60.252
55.000
0.00
0.00
0.00
4.51
2160
3762
4.889409
TGTATCATCCAATTCTTTCCCTGC
59.111
41.667
0.00
0.00
0.00
4.85
2207
3810
4.037803
TGAAATTTCATCCCACACACACTG
59.962
41.667
16.91
0.00
31.01
3.66
Based at the University of Bristol with support from BBSRC .
AutoCloner maintained by Alex Coulton.