Multiple sequence alignment - TraesCS5B01G527200

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G527200 chr5B 100.000 4219 0 0 1 4219 686455843 686460061 0.000000e+00 7792
1 TraesCS5B01G527200 chr5B 87.804 1771 179 20 1706 3459 686541876 686543626 0.000000e+00 2039
2 TraesCS5B01G527200 chr5B 83.310 713 82 24 2765 3457 686473348 686472653 1.290000e-174 623
3 TraesCS5B01G527200 chr5B 93.023 86 6 0 1217 1302 686541084 686541169 4.430000e-25 126
4 TraesCS5B01G527200 chr4A 92.189 1754 128 4 1706 3452 624342880 624344631 0.000000e+00 2471
5 TraesCS5B01G527200 chr4A 88.883 1763 174 13 1706 3452 624228036 624229792 0.000000e+00 2150
6 TraesCS5B01G527200 chr4A 86.294 1773 192 21 1709 3459 624141087 624142830 0.000000e+00 1881
7 TraesCS5B01G527200 chr4A 87.664 762 80 6 2642 3393 624362106 624362863 0.000000e+00 874
8 TraesCS5B01G527200 chr4A 92.487 599 36 3 3622 4219 624110909 624111499 0.000000e+00 848
9 TraesCS5B01G527200 chr4A 92.431 436 11 10 870 1301 624050937 624051354 1.680000e-168 603
10 TraesCS5B01G527200 chr4A 81.431 657 79 22 2826 3458 625201984 625202621 8.150000e-137 497
11 TraesCS5B01G527200 chr4A 86.635 419 45 4 2499 2907 624263122 624263539 1.790000e-123 453
12 TraesCS5B01G527200 chr4A 82.642 530 28 28 231 710 624050348 624050863 1.090000e-110 411
13 TraesCS5B01G527200 chr4A 96.000 250 9 1 1300 1549 624051402 624051650 5.080000e-109 405
14 TraesCS5B01G527200 chr4A 89.324 281 20 5 1433 1703 624227490 624227770 1.120000e-90 344
15 TraesCS5B01G527200 chr4A 95.706 163 7 0 1544 1706 624052902 624053064 3.230000e-66 263
16 TraesCS5B01G527200 chr4A 77.966 354 35 19 175 505 624226271 624226604 9.320000e-42 182
17 TraesCS5B01G527200 chr4A 94.340 106 3 2 128 231 624050190 624050294 4.370000e-35 159
18 TraesCS5B01G527200 chr4A 79.710 207 26 10 1324 1527 625200335 625200528 7.360000e-28 135
19 TraesCS5B01G527200 chr4A 92.500 80 6 0 1326 1405 624227414 624227493 9.590000e-22 115
20 TraesCS5B01G527200 chr4A 91.250 80 6 1 750 829 624050861 624050939 1.600000e-19 108
21 TraesCS5B01G527200 chr5D 92.224 1736 115 10 1706 3433 544457523 544459246 0.000000e+00 2440
22 TraesCS5B01G527200 chr5D 87.048 1768 180 17 1706 3452 243995441 243997180 0.000000e+00 1951
23 TraesCS5B01G527200 chr5D 88.983 944 101 3 1703 2645 544477845 544478786 0.000000e+00 1164
24 TraesCS5B01G527200 chr5D 89.057 795 69 9 2668 3454 544478912 544479696 0.000000e+00 970
25 TraesCS5B01G527200 chr5D 84.901 404 36 8 1302 1699 243994855 243995239 6.620000e-103 385
26 TraesCS5B01G527200 chr5D 78.636 220 18 15 345 547 243993906 243994113 7.410000e-23 119
27 TraesCS5B01G527200 chr5A 87.379 1751 177 18 1706 3439 328546616 328548339 0.000000e+00 1969
28 TraesCS5B01G527200 chr5A 85.714 140 13 2 310 442 328540133 328540272 1.580000e-29 141
29 TraesCS5B01G527200 chr5A 84.722 144 18 3 843 984 328545532 328545673 1.580000e-29 141
30 TraesCS5B01G527200 chrUn 87.780 982 118 2 1706 2685 48437587 48438568 0.000000e+00 1147
31 TraesCS5B01G527200 chrUn 84.792 697 92 12 2773 3459 48438679 48439371 0.000000e+00 688
32 TraesCS5B01G527200 chrUn 87.108 287 30 3 1425 1706 48437094 48437378 6.810000e-83 318
33 TraesCS5B01G527200 chrUn 80.072 276 33 13 872 1139 48436591 48436852 7.200000e-43 185
34 TraesCS5B01G527200 chr1D 81.381 333 46 9 3678 4007 205506778 205506459 1.510000e-64 257
35 TraesCS5B01G527200 chr1A 81.250 336 47 10 3675 4007 262821737 262822059 1.510000e-64 257


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G527200 chr5B 686455843 686460061 4218 False 7792.000000 7792 100.000000 1 4219 1 chr5B.!!$F1 4218
1 TraesCS5B01G527200 chr5B 686541084 686543626 2542 False 1082.500000 2039 90.413500 1217 3459 2 chr5B.!!$F2 2242
2 TraesCS5B01G527200 chr5B 686472653 686473348 695 True 623.000000 623 83.310000 2765 3457 1 chr5B.!!$R1 692
3 TraesCS5B01G527200 chr4A 624342880 624344631 1751 False 2471.000000 2471 92.189000 1706 3452 1 chr4A.!!$F4 1746
4 TraesCS5B01G527200 chr4A 624141087 624142830 1743 False 1881.000000 1881 86.294000 1709 3459 1 chr4A.!!$F2 1750
5 TraesCS5B01G527200 chr4A 624362106 624362863 757 False 874.000000 874 87.664000 2642 3393 1 chr4A.!!$F5 751
6 TraesCS5B01G527200 chr4A 624110909 624111499 590 False 848.000000 848 92.487000 3622 4219 1 chr4A.!!$F1 597
7 TraesCS5B01G527200 chr4A 624226271 624229792 3521 False 697.750000 2150 87.168250 175 3452 4 chr4A.!!$F7 3277
8 TraesCS5B01G527200 chr4A 624050190 624053064 2874 False 324.833333 603 92.061500 128 1706 6 chr4A.!!$F6 1578
9 TraesCS5B01G527200 chr4A 625200335 625202621 2286 False 316.000000 497 80.570500 1324 3458 2 chr4A.!!$F8 2134
10 TraesCS5B01G527200 chr5D 544457523 544459246 1723 False 2440.000000 2440 92.224000 1706 3433 1 chr5D.!!$F1 1727
11 TraesCS5B01G527200 chr5D 544477845 544479696 1851 False 1067.000000 1164 89.020000 1703 3454 2 chr5D.!!$F3 1751
12 TraesCS5B01G527200 chr5D 243993906 243997180 3274 False 818.333333 1951 83.528333 345 3452 3 chr5D.!!$F2 3107
13 TraesCS5B01G527200 chr5A 328545532 328548339 2807 False 1055.000000 1969 86.050500 843 3439 2 chr5A.!!$F2 2596
14 TraesCS5B01G527200 chrUn 48436591 48439371 2780 False 584.500000 1147 84.938000 872 3459 4 chrUn.!!$F1 2587

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
729 920 0.036577 AGCAGCAGCACAAGTAGAGG 60.037 55.000 3.17 0.00 45.49 3.69 F
730 921 0.036952 GCAGCAGCACAAGTAGAGGA 60.037 55.000 0.00 0.00 41.58 3.71 F
734 925 1.208052 GCAGCACAAGTAGAGGATCCA 59.792 52.381 15.82 0.00 33.66 3.41 F
979 1180 1.225745 CGTTCAAAGCATCGTCGGC 60.226 57.895 0.00 0.00 0.00 5.54 F
1713 3703 2.126071 GCACATTGCTGGCAGCTG 60.126 61.111 36.50 29.25 42.97 4.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2377 4368 0.670854 GAACACGGAGTCTTGAGCCC 60.671 60.000 0.00 0.0 41.61 5.19 R
2544 4535 1.195448 AGCGTTGCTGACAATTCGAAG 59.805 47.619 3.35 0.0 37.57 3.79 R
2590 4581 4.762765 AGAGTATGTATGCCTCTTACTCCG 59.237 45.833 15.38 0.0 40.36 4.63 R
2934 5175 2.549754 GCTGCTACAAGAAAAGCTGTCA 59.450 45.455 0.00 0.0 39.20 3.58 R
3520 5788 0.174845 CCGTCAGGCAACGAGGAATA 59.825 55.000 13.12 0.0 45.37 1.75 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.763215 GCATCCACCCCTGTTGGA 59.237 61.111 0.00 0.00 35.39 3.53
18 19 1.076549 GCATCCACCCCTGTTGGAA 59.923 57.895 0.00 0.00 35.13 3.53
19 20 0.324645 GCATCCACCCCTGTTGGAAT 60.325 55.000 0.00 0.00 35.13 3.01
20 21 1.767759 CATCCACCCCTGTTGGAATC 58.232 55.000 0.00 0.00 35.13 2.52
21 22 0.255890 ATCCACCCCTGTTGGAATCG 59.744 55.000 0.00 0.00 35.13 3.34
22 23 0.838554 TCCACCCCTGTTGGAATCGA 60.839 55.000 0.00 0.00 35.39 3.59
23 24 0.255890 CCACCCCTGTTGGAATCGAT 59.744 55.000 0.00 0.00 35.39 3.59
24 25 1.382522 CACCCCTGTTGGAATCGATG 58.617 55.000 0.00 0.00 35.39 3.84
25 26 0.255890 ACCCCTGTTGGAATCGATGG 59.744 55.000 0.00 0.00 35.39 3.51
26 27 1.103398 CCCCTGTTGGAATCGATGGC 61.103 60.000 0.00 0.00 35.39 4.40
27 28 1.439353 CCCTGTTGGAATCGATGGCG 61.439 60.000 0.00 0.00 35.39 5.69
28 29 0.744414 CCTGTTGGAATCGATGGCGT 60.744 55.000 0.00 0.00 35.45 5.68
29 30 0.652592 CTGTTGGAATCGATGGCGTC 59.347 55.000 0.00 0.00 38.98 5.19
37 38 2.579787 CGATGGCGTCGTCTCCAC 60.580 66.667 20.53 0.00 45.19 4.02
43 44 4.813526 CGTCGTCTCCACGCTCGG 62.814 72.222 0.00 0.00 46.28 4.63
58 59 4.873129 CGGCGACCGGAGTGGATG 62.873 72.222 9.46 0.00 44.15 3.51
61 62 4.873129 CGACCGGAGTGGATGCCG 62.873 72.222 9.46 0.00 46.80 5.69
68 69 4.087892 AGTGGATGCCGCTCGCTT 62.088 61.111 0.00 0.00 40.81 4.68
69 70 3.567797 GTGGATGCCGCTCGCTTC 61.568 66.667 0.00 1.30 40.18 3.86
72 73 2.964389 GATGCCGCTCGCTTCCTC 60.964 66.667 0.00 0.00 38.78 3.71
73 74 4.537433 ATGCCGCTCGCTTCCTCC 62.537 66.667 0.00 0.00 38.78 4.30
76 77 4.856607 CCGCTCGCTTCCTCCGTC 62.857 72.222 0.00 0.00 0.00 4.79
77 78 4.856607 CGCTCGCTTCCTCCGTCC 62.857 72.222 0.00 0.00 0.00 4.79
78 79 4.856607 GCTCGCTTCCTCCGTCCG 62.857 72.222 0.00 0.00 0.00 4.79
79 80 3.441290 CTCGCTTCCTCCGTCCGT 61.441 66.667 0.00 0.00 0.00 4.69
80 81 3.398353 CTCGCTTCCTCCGTCCGTC 62.398 68.421 0.00 0.00 0.00 4.79
81 82 4.493747 CGCTTCCTCCGTCCGTCC 62.494 72.222 0.00 0.00 0.00 4.79
82 83 4.493747 GCTTCCTCCGTCCGTCCG 62.494 72.222 0.00 0.00 0.00 4.79
83 84 3.060615 CTTCCTCCGTCCGTCCGT 61.061 66.667 0.00 0.00 0.00 4.69
84 85 3.048941 CTTCCTCCGTCCGTCCGTC 62.049 68.421 0.00 0.00 0.00 4.79
90 91 4.112341 CGTCCGTCCGTCCCTGTC 62.112 72.222 0.00 0.00 0.00 3.51
91 92 3.756727 GTCCGTCCGTCCCTGTCC 61.757 72.222 0.00 0.00 0.00 4.02
92 93 4.289101 TCCGTCCGTCCCTGTCCA 62.289 66.667 0.00 0.00 0.00 4.02
93 94 3.075005 CCGTCCGTCCCTGTCCAT 61.075 66.667 0.00 0.00 0.00 3.41
94 95 2.184322 CGTCCGTCCCTGTCCATG 59.816 66.667 0.00 0.00 0.00 3.66
95 96 2.646175 CGTCCGTCCCTGTCCATGT 61.646 63.158 0.00 0.00 0.00 3.21
96 97 1.218316 GTCCGTCCCTGTCCATGTC 59.782 63.158 0.00 0.00 0.00 3.06
97 98 1.229051 TCCGTCCCTGTCCATGTCA 60.229 57.895 0.00 0.00 0.00 3.58
98 99 0.617535 TCCGTCCCTGTCCATGTCAT 60.618 55.000 0.00 0.00 0.00 3.06
99 100 0.462581 CCGTCCCTGTCCATGTCATG 60.463 60.000 5.79 5.79 0.00 3.07
107 108 2.903855 CCATGTCATGGCCGCCTC 60.904 66.667 18.91 0.00 44.70 4.70
108 109 2.903855 CATGTCATGGCCGCCTCC 60.904 66.667 11.61 0.00 0.00 4.30
109 110 4.552365 ATGTCATGGCCGCCTCCG 62.552 66.667 11.61 0.00 0.00 4.63
123 124 3.948702 TCCGGCGATGGAGATCAA 58.051 55.556 9.30 0.00 33.05 2.57
124 125 1.441729 TCCGGCGATGGAGATCAAC 59.558 57.895 9.30 0.00 33.05 3.18
125 126 1.143838 CCGGCGATGGAGATCAACA 59.856 57.895 9.30 0.00 0.00 3.33
126 127 0.461870 CCGGCGATGGAGATCAACAA 60.462 55.000 9.30 0.00 0.00 2.83
127 128 0.933097 CGGCGATGGAGATCAACAAG 59.067 55.000 0.00 0.00 0.00 3.16
128 129 1.740380 CGGCGATGGAGATCAACAAGT 60.740 52.381 0.00 0.00 0.00 3.16
129 130 2.359900 GGCGATGGAGATCAACAAGTT 58.640 47.619 0.00 0.00 0.00 2.66
130 131 2.352960 GGCGATGGAGATCAACAAGTTC 59.647 50.000 0.00 0.00 0.00 3.01
131 132 2.029728 GCGATGGAGATCAACAAGTTCG 59.970 50.000 0.00 1.53 0.00 3.95
132 133 2.604914 CGATGGAGATCAACAAGTTCGG 59.395 50.000 0.00 0.00 0.00 4.30
133 134 3.600388 GATGGAGATCAACAAGTTCGGT 58.400 45.455 0.00 0.00 0.00 4.69
150 151 3.699067 TCGGTTCGGTAGAATTCGATTC 58.301 45.455 0.00 0.00 38.73 2.52
156 157 6.034898 GGTTCGGTAGAATTCGATTCGTTTTA 59.965 38.462 5.89 0.00 43.92 1.52
313 375 1.142314 GAGCAGAGCAGAGCAGAGG 59.858 63.158 0.00 0.00 0.00 3.69
314 376 1.606885 GAGCAGAGCAGAGCAGAGGT 61.607 60.000 0.00 0.00 0.00 3.85
315 377 1.448189 GCAGAGCAGAGCAGAGGTG 60.448 63.158 0.00 0.00 0.00 4.00
316 378 1.886253 GCAGAGCAGAGCAGAGGTGA 61.886 60.000 0.00 0.00 0.00 4.02
317 379 0.173935 CAGAGCAGAGCAGAGGTGAG 59.826 60.000 0.00 0.00 0.00 3.51
318 380 0.039472 AGAGCAGAGCAGAGGTGAGA 59.961 55.000 0.00 0.00 0.00 3.27
319 381 0.457035 GAGCAGAGCAGAGGTGAGAG 59.543 60.000 0.00 0.00 0.00 3.20
320 382 1.153588 GCAGAGCAGAGGTGAGAGC 60.154 63.158 0.00 0.00 0.00 4.09
321 383 1.516892 CAGAGCAGAGGTGAGAGCC 59.483 63.158 0.00 0.00 0.00 4.70
322 384 1.685421 AGAGCAGAGGTGAGAGCCC 60.685 63.158 0.00 0.00 0.00 5.19
323 385 1.986757 GAGCAGAGGTGAGAGCCCA 60.987 63.158 0.00 0.00 0.00 5.36
324 386 1.958902 GAGCAGAGGTGAGAGCCCAG 61.959 65.000 0.00 0.00 0.00 4.45
360 422 1.821753 CTCTTCCTCTTCTTCTCCGCA 59.178 52.381 0.00 0.00 0.00 5.69
424 505 2.516448 TCCATCTCGGATTCGGCTT 58.484 52.632 0.00 0.00 39.64 4.35
436 517 2.419100 TTCGGCTTCGTTTGTTCGCG 62.419 55.000 0.00 0.00 35.06 5.87
557 697 1.293963 GCACGTTCCTCCGTTTACCC 61.294 60.000 0.00 0.00 39.45 3.69
578 718 0.666913 TATCTGTCTAACGCGGAGGC 59.333 55.000 12.47 9.76 0.00 4.70
642 795 3.244735 GCCAGACCTTCCTTCTTCTTCTT 60.245 47.826 0.00 0.00 0.00 2.52
648 801 6.328934 AGACCTTCCTTCTTCTTCTTCTTCTT 59.671 38.462 0.00 0.00 0.00 2.52
649 802 6.530120 ACCTTCCTTCTTCTTCTTCTTCTTC 58.470 40.000 0.00 0.00 0.00 2.87
651 804 7.147391 ACCTTCCTTCTTCTTCTTCTTCTTCTT 60.147 37.037 0.00 0.00 0.00 2.52
652 805 7.387673 CCTTCCTTCTTCTTCTTCTTCTTCTTC 59.612 40.741 0.00 0.00 0.00 2.87
653 806 7.610580 TCCTTCTTCTTCTTCTTCTTCTTCT 57.389 36.000 0.00 0.00 0.00 2.85
654 807 8.028652 TCCTTCTTCTTCTTCTTCTTCTTCTT 57.971 34.615 0.00 0.00 0.00 2.52
655 808 8.147704 TCCTTCTTCTTCTTCTTCTTCTTCTTC 58.852 37.037 0.00 0.00 0.00 2.87
681 840 5.257082 TCATGCGAGTAGTGCTGTTTATA 57.743 39.130 0.00 0.00 0.00 0.98
720 911 1.002684 GATCAATAGCAGCAGCAGCAC 60.003 52.381 12.92 0.00 45.49 4.40
721 912 0.321830 TCAATAGCAGCAGCAGCACA 60.322 50.000 12.92 0.00 45.49 4.57
725 916 0.321346 TAGCAGCAGCAGCACAAGTA 59.679 50.000 12.92 0.00 45.49 2.24
728 919 1.077123 CAGCAGCAGCACAAGTAGAG 58.923 55.000 3.17 0.00 45.49 2.43
729 920 0.036577 AGCAGCAGCACAAGTAGAGG 60.037 55.000 3.17 0.00 45.49 3.69
730 921 0.036952 GCAGCAGCACAAGTAGAGGA 60.037 55.000 0.00 0.00 41.58 3.71
731 922 1.406614 GCAGCAGCACAAGTAGAGGAT 60.407 52.381 0.00 0.00 41.58 3.24
732 923 2.548875 CAGCAGCACAAGTAGAGGATC 58.451 52.381 0.00 0.00 0.00 3.36
733 924 1.484240 AGCAGCACAAGTAGAGGATCC 59.516 52.381 2.48 2.48 33.66 3.36
734 925 1.208052 GCAGCACAAGTAGAGGATCCA 59.792 52.381 15.82 0.00 33.66 3.41
867 1062 2.282745 GGAGTGGGCTTTGCTGCT 60.283 61.111 0.00 0.00 0.00 4.24
971 1172 4.792704 GCCTCAAAGATTTCGTTCAAAGCA 60.793 41.667 0.00 0.00 32.36 3.91
979 1180 1.225745 CGTTCAAAGCATCGTCGGC 60.226 57.895 0.00 0.00 0.00 5.54
1031 1279 5.391097 CCATAAATAACGGTTTCAGCGACAA 60.391 40.000 0.00 0.00 42.41 3.18
1357 1719 5.576774 CGAACCTGGCCATAATTTTTCTTTC 59.423 40.000 5.51 0.00 0.00 2.62
1606 3238 7.037438 GTGTGGATTGATGCATACTTTTCATT 58.963 34.615 0.00 0.00 37.29 2.57
1713 3703 2.126071 GCACATTGCTGGCAGCTG 60.126 61.111 36.50 29.25 42.97 4.24
1750 3740 4.463539 TGATTTATGTTGCAGCAACTGGAT 59.536 37.500 32.99 22.57 43.85 3.41
1761 3751 4.375272 CAGCAACTGGATGACGAAGATAT 58.625 43.478 0.00 0.00 33.82 1.63
1786 3776 3.323115 TCAGCACCCTCACTGATGATATC 59.677 47.826 0.00 0.00 37.99 1.63
1795 3785 6.266330 CCCTCACTGATGATATCTTACTGTCA 59.734 42.308 3.98 0.00 33.22 3.58
1817 3807 2.251818 TCTTGGGGAGAGTCAGTTCAG 58.748 52.381 0.00 0.00 0.00 3.02
2344 4335 8.986847 CATCTAACTCTTCATCATTGTGATACC 58.013 37.037 0.00 0.00 34.28 2.73
2365 4356 4.591924 ACCGGTTCCTTCTCTCTCTTTAAA 59.408 41.667 0.00 0.00 0.00 1.52
2368 4359 6.314152 CCGGTTCCTTCTCTCTCTTTAAAATC 59.686 42.308 0.00 0.00 0.00 2.17
2377 4368 4.566759 TCTCTCTTTAAAATCGATGCACCG 59.433 41.667 0.00 0.00 0.00 4.94
2385 4376 2.930385 ATCGATGCACCGGGCTCAAG 62.930 60.000 6.32 0.00 45.15 3.02
2446 4437 3.249189 GACCTGGTGTGCCTCCCA 61.249 66.667 2.82 0.00 35.27 4.37
2544 4535 3.942115 GGGGAATTAGAACTCTCAAGTGC 59.058 47.826 0.00 0.00 35.36 4.40
2548 4539 5.062809 GGAATTAGAACTCTCAAGTGCTTCG 59.937 44.000 0.00 0.00 38.32 3.79
2555 4546 3.743396 ACTCTCAAGTGCTTCGAATTGTC 59.257 43.478 0.00 0.00 33.32 3.18
2598 4589 3.440872 AGTGAGCTTCTACACGGAGTAAG 59.559 47.826 0.00 0.00 41.61 2.34
2660 4743 8.593492 AACCGTAAGTACTTCTTTATTTTCGT 57.407 30.769 12.39 0.00 37.56 3.85
2698 4877 7.572523 ATTTGGTATTCATCATGTCGTCATT 57.427 32.000 0.00 0.00 31.15 2.57
2799 4986 6.816134 TTCTGTGCTTGCAAACTATCAATA 57.184 33.333 0.00 0.00 0.00 1.90
2941 5182 6.839124 TTTGACATTTTATGGATGACAGCT 57.161 33.333 0.00 0.00 32.50 4.24
3047 5288 8.641499 TGGAGCTTTAGTTTTACACAAATTTG 57.359 30.769 16.67 16.67 0.00 2.32
3059 5300 4.359706 ACACAAATTTGAGCGGAAAGTTC 58.640 39.130 24.64 0.00 0.00 3.01
3072 5313 5.358725 AGCGGAAAGTTCTTTAAAACTTGGA 59.641 36.000 6.14 0.00 46.17 3.53
3100 5352 5.470098 ACTCTAATGAATTGGTCACACACAC 59.530 40.000 0.00 0.00 39.72 3.82
3103 5355 2.716217 TGAATTGGTCACACACACACA 58.284 42.857 0.00 0.00 0.00 3.72
3104 5356 2.682352 TGAATTGGTCACACACACACAG 59.318 45.455 0.00 0.00 0.00 3.66
3149 5401 4.473520 GCGAGGCCAGGCTTGCTA 62.474 66.667 22.58 0.00 0.00 3.49
3160 5412 2.092968 CAGGCTTGCTACCTACCATGAA 60.093 50.000 0.00 0.00 35.10 2.57
3196 5456 0.890683 GGGAAATGCACTTGGACAGG 59.109 55.000 0.00 0.00 0.00 4.00
3205 5465 1.216710 CTTGGACAGGAGCTCCGAC 59.783 63.158 26.95 20.15 42.08 4.79
3210 5470 0.247736 GACAGGAGCTCCGACAACAT 59.752 55.000 26.95 4.70 42.08 2.71
3506 5774 9.959721 AGAAATAACAGTTTGTATACTCCATGT 57.040 29.630 4.17 1.96 0.00 3.21
3508 5776 8.732746 AATAACAGTTTGTATACTCCATGTCC 57.267 34.615 4.17 0.00 0.00 4.02
3509 5777 6.374417 AACAGTTTGTATACTCCATGTCCT 57.626 37.500 4.17 0.00 0.00 3.85
3510 5778 5.734720 ACAGTTTGTATACTCCATGTCCTG 58.265 41.667 4.17 2.35 0.00 3.86
3511 5779 5.248477 ACAGTTTGTATACTCCATGTCCTGT 59.752 40.000 4.17 2.89 0.00 4.00
3512 5780 6.173339 CAGTTTGTATACTCCATGTCCTGTT 58.827 40.000 4.17 0.00 0.00 3.16
3513 5781 6.092670 CAGTTTGTATACTCCATGTCCTGTTG 59.907 42.308 4.17 0.00 0.00 3.33
3514 5782 4.137116 TGTATACTCCATGTCCTGTTGC 57.863 45.455 4.17 0.00 0.00 4.17
3515 5783 3.774766 TGTATACTCCATGTCCTGTTGCT 59.225 43.478 4.17 0.00 0.00 3.91
3516 5784 4.225042 TGTATACTCCATGTCCTGTTGCTT 59.775 41.667 4.17 0.00 0.00 3.91
3517 5785 2.664402 ACTCCATGTCCTGTTGCTTT 57.336 45.000 0.00 0.00 0.00 3.51
3518 5786 3.788227 ACTCCATGTCCTGTTGCTTTA 57.212 42.857 0.00 0.00 0.00 1.85
3519 5787 4.098914 ACTCCATGTCCTGTTGCTTTAA 57.901 40.909 0.00 0.00 0.00 1.52
3520 5788 4.666512 ACTCCATGTCCTGTTGCTTTAAT 58.333 39.130 0.00 0.00 0.00 1.40
3521 5789 5.815581 ACTCCATGTCCTGTTGCTTTAATA 58.184 37.500 0.00 0.00 0.00 0.98
3522 5790 6.426587 ACTCCATGTCCTGTTGCTTTAATAT 58.573 36.000 0.00 0.00 0.00 1.28
3523 5791 6.891908 ACTCCATGTCCTGTTGCTTTAATATT 59.108 34.615 0.00 0.00 0.00 1.28
3524 5792 7.067494 ACTCCATGTCCTGTTGCTTTAATATTC 59.933 37.037 0.00 0.00 0.00 1.75
3525 5793 6.321181 TCCATGTCCTGTTGCTTTAATATTCC 59.679 38.462 0.00 0.00 0.00 3.01
3526 5794 6.322201 CCATGTCCTGTTGCTTTAATATTCCT 59.678 38.462 0.00 0.00 0.00 3.36
3527 5795 7.420800 CATGTCCTGTTGCTTTAATATTCCTC 58.579 38.462 0.00 0.00 0.00 3.71
3528 5796 5.584649 TGTCCTGTTGCTTTAATATTCCTCG 59.415 40.000 0.00 0.00 0.00 4.63
3529 5797 5.585047 GTCCTGTTGCTTTAATATTCCTCGT 59.415 40.000 0.00 0.00 0.00 4.18
3530 5798 6.093633 GTCCTGTTGCTTTAATATTCCTCGTT 59.906 38.462 0.00 0.00 0.00 3.85
3531 5799 6.093495 TCCTGTTGCTTTAATATTCCTCGTTG 59.907 38.462 0.00 0.00 0.00 4.10
3532 5800 5.636837 TGTTGCTTTAATATTCCTCGTTGC 58.363 37.500 0.00 0.00 0.00 4.17
3533 5801 4.893424 TGCTTTAATATTCCTCGTTGCC 57.107 40.909 0.00 0.00 0.00 4.52
3534 5802 4.523083 TGCTTTAATATTCCTCGTTGCCT 58.477 39.130 0.00 0.00 0.00 4.75
3535 5803 4.335315 TGCTTTAATATTCCTCGTTGCCTG 59.665 41.667 0.00 0.00 0.00 4.85
3536 5804 4.574828 GCTTTAATATTCCTCGTTGCCTGA 59.425 41.667 0.00 0.00 0.00 3.86
3537 5805 5.504173 GCTTTAATATTCCTCGTTGCCTGAC 60.504 44.000 0.00 0.00 0.00 3.51
3538 5806 2.225068 ATATTCCTCGTTGCCTGACG 57.775 50.000 0.00 0.00 44.06 4.35
3539 5807 0.174845 TATTCCTCGTTGCCTGACGG 59.825 55.000 4.84 0.00 42.98 4.79
3549 5817 2.898738 CCTGACGGCTGAGCATCT 59.101 61.111 6.82 0.00 34.92 2.90
3550 5818 1.227205 CCTGACGGCTGAGCATCTC 60.227 63.158 6.82 0.00 34.92 2.75
3551 5819 1.514553 CTGACGGCTGAGCATCTCA 59.485 57.895 6.82 2.22 38.25 3.27
3563 5831 4.686972 TGAGCATCTCAGATTAGGTTTCG 58.313 43.478 0.00 0.00 35.39 3.46
3564 5832 4.402474 TGAGCATCTCAGATTAGGTTTCGA 59.598 41.667 0.00 0.00 35.39 3.71
3565 5833 4.688021 AGCATCTCAGATTAGGTTTCGAC 58.312 43.478 0.00 0.00 0.00 4.20
3566 5834 4.404073 AGCATCTCAGATTAGGTTTCGACT 59.596 41.667 0.00 0.00 0.00 4.18
3567 5835 4.742659 GCATCTCAGATTAGGTTTCGACTC 59.257 45.833 0.00 0.00 0.00 3.36
3568 5836 5.451242 GCATCTCAGATTAGGTTTCGACTCT 60.451 44.000 0.00 0.00 0.00 3.24
3569 5837 5.568685 TCTCAGATTAGGTTTCGACTCTG 57.431 43.478 0.00 0.00 33.16 3.35
3570 5838 4.109050 CTCAGATTAGGTTTCGACTCTGC 58.891 47.826 0.00 0.00 32.20 4.26
3571 5839 3.509967 TCAGATTAGGTTTCGACTCTGCA 59.490 43.478 0.00 0.00 32.20 4.41
3572 5840 3.614616 CAGATTAGGTTTCGACTCTGCAC 59.385 47.826 0.00 0.00 0.00 4.57
3573 5841 3.258372 AGATTAGGTTTCGACTCTGCACA 59.742 43.478 0.00 0.00 0.00 4.57
3574 5842 3.678056 TTAGGTTTCGACTCTGCACAT 57.322 42.857 0.00 0.00 0.00 3.21
3575 5843 2.086054 AGGTTTCGACTCTGCACATC 57.914 50.000 0.00 0.00 0.00 3.06
3576 5844 1.620819 AGGTTTCGACTCTGCACATCT 59.379 47.619 0.00 0.00 0.00 2.90
3577 5845 2.037772 AGGTTTCGACTCTGCACATCTT 59.962 45.455 0.00 0.00 0.00 2.40
3578 5846 2.808543 GGTTTCGACTCTGCACATCTTT 59.191 45.455 0.00 0.00 0.00 2.52
3579 5847 3.251004 GGTTTCGACTCTGCACATCTTTT 59.749 43.478 0.00 0.00 0.00 2.27
3580 5848 4.214437 GTTTCGACTCTGCACATCTTTTG 58.786 43.478 0.00 0.00 0.00 2.44
3581 5849 3.385193 TCGACTCTGCACATCTTTTGA 57.615 42.857 0.00 0.00 0.00 2.69
3582 5850 3.930336 TCGACTCTGCACATCTTTTGAT 58.070 40.909 0.00 0.00 40.34 2.57
3602 5870 6.662414 TGATGTTATCAAAAGGTAAGCTCG 57.338 37.500 0.00 0.00 36.11 5.03
3603 5871 6.403049 TGATGTTATCAAAAGGTAAGCTCGA 58.597 36.000 0.00 0.00 36.11 4.04
3604 5872 6.535150 TGATGTTATCAAAAGGTAAGCTCGAG 59.465 38.462 8.45 8.45 36.11 4.04
3605 5873 6.032956 TGTTATCAAAAGGTAAGCTCGAGA 57.967 37.500 18.75 0.00 0.00 4.04
3606 5874 6.100004 TGTTATCAAAAGGTAAGCTCGAGAG 58.900 40.000 18.75 0.00 0.00 3.20
3607 5875 4.810191 ATCAAAAGGTAAGCTCGAGAGT 57.190 40.909 18.75 4.94 0.00 3.24
3608 5876 4.602340 TCAAAAGGTAAGCTCGAGAGTT 57.398 40.909 18.75 11.12 0.00 3.01
3609 5877 4.307432 TCAAAAGGTAAGCTCGAGAGTTG 58.693 43.478 18.75 7.43 0.00 3.16
3610 5878 4.038763 TCAAAAGGTAAGCTCGAGAGTTGA 59.961 41.667 18.75 9.52 0.00 3.18
3611 5879 4.810191 AAAGGTAAGCTCGAGAGTTGAT 57.190 40.909 18.75 0.00 0.00 2.57
3612 5880 4.810191 AAGGTAAGCTCGAGAGTTGATT 57.190 40.909 18.75 0.32 0.00 2.57
3613 5881 4.810191 AGGTAAGCTCGAGAGTTGATTT 57.190 40.909 18.75 0.83 0.00 2.17
3614 5882 5.153950 AGGTAAGCTCGAGAGTTGATTTT 57.846 39.130 18.75 0.00 0.00 1.82
3615 5883 5.552178 AGGTAAGCTCGAGAGTTGATTTTT 58.448 37.500 18.75 0.00 0.00 1.94
3616 5884 6.698380 AGGTAAGCTCGAGAGTTGATTTTTA 58.302 36.000 18.75 0.00 0.00 1.52
3617 5885 7.331791 AGGTAAGCTCGAGAGTTGATTTTTAT 58.668 34.615 18.75 0.00 0.00 1.40
3618 5886 8.475639 AGGTAAGCTCGAGAGTTGATTTTTATA 58.524 33.333 18.75 0.00 0.00 0.98
3619 5887 8.541312 GGTAAGCTCGAGAGTTGATTTTTATAC 58.459 37.037 18.75 0.48 0.00 1.47
3620 5888 9.084164 GTAAGCTCGAGAGTTGATTTTTATACA 57.916 33.333 18.75 0.00 0.00 2.29
3700 5968 4.399303 GCCTATTGCTTCTTGCTTTTCCTA 59.601 41.667 0.00 0.00 43.37 2.94
3705 5973 3.004734 TGCTTCTTGCTTTTCCTAGTTGC 59.995 43.478 0.00 0.00 43.37 4.17
3709 5977 5.941948 TCTTGCTTTTCCTAGTTGCTAAC 57.058 39.130 0.00 0.00 0.00 2.34
3750 6018 3.445008 TCTTCCAGATGGTAAGAGCACT 58.555 45.455 0.00 0.00 36.34 4.40
3751 6019 3.840666 TCTTCCAGATGGTAAGAGCACTT 59.159 43.478 1.05 1.05 39.81 3.16
3752 6020 5.023452 TCTTCCAGATGGTAAGAGCACTTA 58.977 41.667 0.00 0.00 37.53 2.24
3753 6021 5.127845 TCTTCCAGATGGTAAGAGCACTTAG 59.872 44.000 3.65 0.00 38.97 2.18
3754 6022 4.610333 TCCAGATGGTAAGAGCACTTAGA 58.390 43.478 3.65 0.00 38.97 2.10
3825 6094 8.827177 ATATCATTGAATTGACATGCCAAATC 57.173 30.769 0.00 0.22 0.00 2.17
3905 6174 8.014263 TGTATATGTATTAACCTCTTCCTGGGA 58.986 37.037 0.00 0.00 0.00 4.37
3950 6219 4.295051 TGAACTTTGAACAAAATAGCGGC 58.705 39.130 0.00 0.00 0.00 6.53
3951 6220 4.202060 TGAACTTTGAACAAAATAGCGGCA 60.202 37.500 1.45 0.00 0.00 5.69
3972 6241 6.051717 GGCATGTAGATAGTCAAATGTGTCT 58.948 40.000 0.00 0.00 0.00 3.41
3978 6247 9.817809 TGTAGATAGTCAAATGTGTCTTATTCC 57.182 33.333 0.00 0.00 0.00 3.01
3991 6260 7.106890 TGTGTCTTATTCCGATGGTGAAATTA 58.893 34.615 0.00 0.00 0.00 1.40
4003 6272 7.331687 CCGATGGTGAAATTAAATCTGCTTTTT 59.668 33.333 0.00 0.00 0.00 1.94
4038 6307 7.093814 CCTTTTATCACTCCAAATGGTGAATCA 60.094 37.037 8.41 0.00 44.10 2.57
4057 6326 9.736023 GTGAATCAAATTTACCTATTCATGACC 57.264 33.333 14.99 5.07 38.44 4.02
4059 6328 9.956720 GAATCAAATTTACCTATTCATGACCAG 57.043 33.333 0.00 0.00 0.00 4.00
4062 6331 9.699410 TCAAATTTACCTATTCATGACCAGATT 57.301 29.630 0.00 0.00 0.00 2.40
4068 6337 9.527157 TTACCTATTCATGACCAGATTTTCAAA 57.473 29.630 0.00 0.00 0.00 2.69
4078 6347 9.829507 ATGACCAGATTTTCAAAAATTTGTGTA 57.170 25.926 8.22 0.00 38.25 2.90
4161 6430 6.149504 GCTTTTGCTTCTCTAATTTTGCTG 57.850 37.500 0.00 0.00 43.35 4.41
4179 6448 6.500684 TTGCTGTATTCATGTCTTTTCCTC 57.499 37.500 0.00 0.00 0.00 3.71
4207 6476 3.565905 AGCTGCAACTGACTAATTTGC 57.434 42.857 1.02 0.00 44.84 3.68
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 1.767759 GATTCCAACAGGGGTGGATG 58.232 55.000 3.46 0.00 37.22 3.51
2 3 0.255890 CGATTCCAACAGGGGTGGAT 59.744 55.000 3.46 0.00 37.22 3.41
3 4 0.838554 TCGATTCCAACAGGGGTGGA 60.839 55.000 0.00 0.00 37.22 4.02
5 6 1.382522 CATCGATTCCAACAGGGGTG 58.617 55.000 0.00 0.00 37.22 4.61
6 7 0.255890 CCATCGATTCCAACAGGGGT 59.744 55.000 0.00 0.00 37.22 4.95
7 8 1.103398 GCCATCGATTCCAACAGGGG 61.103 60.000 0.00 0.00 37.22 4.79
9 10 0.744414 ACGCCATCGATTCCAACAGG 60.744 55.000 0.00 0.00 39.41 4.00
10 11 0.652592 GACGCCATCGATTCCAACAG 59.347 55.000 0.00 0.00 39.41 3.16
11 12 2.762360 GACGCCATCGATTCCAACA 58.238 52.632 0.00 0.00 39.41 3.33
44 45 4.873129 CGGCATCCACTCCGGTCG 62.873 72.222 0.00 0.00 41.82 4.79
47 48 4.899239 GAGCGGCATCCACTCCGG 62.899 72.222 1.45 0.00 45.37 5.14
59 60 4.856607 GACGGAGGAAGCGAGCGG 62.857 72.222 0.00 0.00 0.00 5.52
60 61 4.856607 GGACGGAGGAAGCGAGCG 62.857 72.222 0.00 0.00 0.00 5.03
61 62 4.856607 CGGACGGAGGAAGCGAGC 62.857 72.222 0.00 0.00 0.00 5.03
62 63 3.398353 GACGGACGGAGGAAGCGAG 62.398 68.421 0.00 0.00 0.00 5.03
63 64 3.437795 GACGGACGGAGGAAGCGA 61.438 66.667 0.00 0.00 0.00 4.93
64 65 4.493747 GGACGGACGGAGGAAGCG 62.494 72.222 0.00 0.00 0.00 4.68
65 66 4.493747 CGGACGGACGGAGGAAGC 62.494 72.222 0.00 0.00 0.00 3.86
66 67 3.048941 GACGGACGGACGGAGGAAG 62.049 68.421 6.00 0.00 38.39 3.46
67 68 3.058160 GACGGACGGACGGAGGAA 61.058 66.667 6.00 0.00 38.39 3.36
73 74 4.112341 GACAGGGACGGACGGACG 62.112 72.222 0.00 0.00 40.31 4.79
74 75 3.756727 GGACAGGGACGGACGGAC 61.757 72.222 0.00 0.00 0.00 4.79
75 76 3.595428 ATGGACAGGGACGGACGGA 62.595 63.158 0.00 0.00 0.00 4.69
76 77 3.075005 ATGGACAGGGACGGACGG 61.075 66.667 0.00 0.00 0.00 4.79
77 78 2.184322 CATGGACAGGGACGGACG 59.816 66.667 0.00 0.00 0.00 4.79
78 79 1.218316 GACATGGACAGGGACGGAC 59.782 63.158 0.00 0.00 0.00 4.79
79 80 0.617535 ATGACATGGACAGGGACGGA 60.618 55.000 0.00 0.00 0.00 4.69
80 81 0.462581 CATGACATGGACAGGGACGG 60.463 60.000 7.60 0.00 0.00 4.79
81 82 3.070076 CATGACATGGACAGGGACG 57.930 57.895 7.60 0.00 0.00 4.79
91 92 2.903855 GGAGGCGGCCATGACATG 60.904 66.667 23.09 8.56 0.00 3.21
92 93 4.552365 CGGAGGCGGCCATGACAT 62.552 66.667 23.09 0.00 0.00 3.06
106 107 1.326951 TGTTGATCTCCATCGCCGGA 61.327 55.000 5.05 0.00 0.00 5.14
107 108 0.461870 TTGTTGATCTCCATCGCCGG 60.462 55.000 0.00 0.00 0.00 6.13
108 109 0.933097 CTTGTTGATCTCCATCGCCG 59.067 55.000 0.00 0.00 0.00 6.46
109 110 2.029838 ACTTGTTGATCTCCATCGCC 57.970 50.000 0.00 0.00 0.00 5.54
110 111 2.029728 CGAACTTGTTGATCTCCATCGC 59.970 50.000 0.00 0.00 0.00 4.58
111 112 2.604914 CCGAACTTGTTGATCTCCATCG 59.395 50.000 0.00 0.00 0.00 3.84
112 113 3.600388 ACCGAACTTGTTGATCTCCATC 58.400 45.455 0.00 0.00 0.00 3.51
113 114 3.703001 ACCGAACTTGTTGATCTCCAT 57.297 42.857 0.00 0.00 0.00 3.41
114 115 3.399330 GAACCGAACTTGTTGATCTCCA 58.601 45.455 0.00 0.00 0.00 3.86
115 116 2.412089 CGAACCGAACTTGTTGATCTCC 59.588 50.000 0.00 0.00 0.00 3.71
116 117 2.412089 CCGAACCGAACTTGTTGATCTC 59.588 50.000 0.00 0.00 0.00 2.75
117 118 2.224209 ACCGAACCGAACTTGTTGATCT 60.224 45.455 0.00 0.00 0.00 2.75
118 119 2.140717 ACCGAACCGAACTTGTTGATC 58.859 47.619 0.00 0.00 0.00 2.92
119 120 2.249844 ACCGAACCGAACTTGTTGAT 57.750 45.000 0.00 0.00 0.00 2.57
120 121 2.361757 TCTACCGAACCGAACTTGTTGA 59.638 45.455 0.00 0.00 0.00 3.18
121 122 2.746269 TCTACCGAACCGAACTTGTTG 58.254 47.619 0.00 0.00 0.00 3.33
122 123 3.457610 TTCTACCGAACCGAACTTGTT 57.542 42.857 0.00 0.00 0.00 2.83
123 124 3.672767 ATTCTACCGAACCGAACTTGT 57.327 42.857 0.00 0.00 30.67 3.16
124 125 3.060363 CGAATTCTACCGAACCGAACTTG 59.940 47.826 3.52 0.00 33.24 3.16
125 126 3.057315 TCGAATTCTACCGAACCGAACTT 60.057 43.478 3.52 0.00 35.82 2.66
126 127 2.489329 TCGAATTCTACCGAACCGAACT 59.511 45.455 3.52 0.00 35.82 3.01
127 128 2.867429 TCGAATTCTACCGAACCGAAC 58.133 47.619 3.52 0.00 35.82 3.95
128 129 3.788333 ATCGAATTCTACCGAACCGAA 57.212 42.857 3.52 0.00 39.38 4.30
129 130 3.699067 GAATCGAATTCTACCGAACCGA 58.301 45.455 3.52 0.00 39.86 4.69
130 131 2.466571 CGAATCGAATTCTACCGAACCG 59.533 50.000 0.00 1.43 38.36 4.44
131 132 3.442100 ACGAATCGAATTCTACCGAACC 58.558 45.455 10.55 0.00 38.36 3.62
132 133 5.446031 AAACGAATCGAATTCTACCGAAC 57.554 39.130 10.55 0.00 38.36 3.95
133 134 7.579589 TTAAAACGAATCGAATTCTACCGAA 57.420 32.000 10.55 0.00 38.36 4.30
260 317 2.036862 ACGAACCCTAGCGAGTTTCTTT 59.963 45.455 0.00 0.00 0.00 2.52
261 318 1.617357 ACGAACCCTAGCGAGTTTCTT 59.383 47.619 0.00 0.00 0.00 2.52
262 319 1.201880 GACGAACCCTAGCGAGTTTCT 59.798 52.381 0.00 0.00 0.00 2.52
263 320 1.626747 GACGAACCCTAGCGAGTTTC 58.373 55.000 0.00 0.00 0.00 2.78
313 375 2.716017 CCGAGGTCTGGGCTCTCAC 61.716 68.421 0.00 0.00 0.00 3.51
314 376 2.363018 CCGAGGTCTGGGCTCTCA 60.363 66.667 0.00 0.00 0.00 3.27
346 408 1.801178 GTGGTTTGCGGAGAAGAAGAG 59.199 52.381 0.00 0.00 0.00 2.85
360 422 2.514160 GGAGGAGGATTATGGGTGGTTT 59.486 50.000 0.00 0.00 0.00 3.27
424 505 2.161012 AGAGATAGACGCGAACAAACGA 59.839 45.455 15.93 0.00 35.09 3.85
436 517 0.589223 CCCGCGTCAGAGAGATAGAC 59.411 60.000 4.92 0.00 0.00 2.59
543 656 3.036091 CAGATAGGGGTAAACGGAGGAA 58.964 50.000 0.00 0.00 0.00 3.36
557 697 1.267261 CCTCCGCGTTAGACAGATAGG 59.733 57.143 4.92 0.00 0.00 2.57
578 718 5.376854 ACTGGTCCTGAAATTCAAATTCG 57.623 39.130 2.23 0.00 0.00 3.34
618 771 0.321996 GAAGAAGGAAGGTCTGGCGT 59.678 55.000 0.00 0.00 0.00 5.68
642 795 5.047731 TCGCATGAAGAGAAGAAGAAGAAGA 60.048 40.000 0.00 0.00 0.00 2.87
648 801 4.702612 ACTACTCGCATGAAGAGAAGAAGA 59.297 41.667 20.74 3.36 38.97 2.87
649 802 4.797868 CACTACTCGCATGAAGAGAAGAAG 59.202 45.833 20.74 14.64 38.97 2.85
651 804 3.428180 GCACTACTCGCATGAAGAGAAGA 60.428 47.826 20.74 8.28 38.97 2.87
652 805 2.857152 GCACTACTCGCATGAAGAGAAG 59.143 50.000 20.74 10.67 38.97 2.85
653 806 2.493675 AGCACTACTCGCATGAAGAGAA 59.506 45.455 20.74 0.00 38.97 2.87
654 807 2.095461 AGCACTACTCGCATGAAGAGA 58.905 47.619 20.74 7.66 38.97 3.10
655 808 2.191802 CAGCACTACTCGCATGAAGAG 58.808 52.381 14.58 14.58 41.27 2.85
728 919 1.522569 CACTCGGGAGGTTGGATCC 59.477 63.158 4.20 4.20 35.99 3.36
729 920 1.153349 GCACTCGGGAGGTTGGATC 60.153 63.158 0.00 0.00 0.00 3.36
730 921 1.488705 TTGCACTCGGGAGGTTGGAT 61.489 55.000 0.00 0.00 0.00 3.41
731 922 2.111999 CTTGCACTCGGGAGGTTGGA 62.112 60.000 0.00 0.00 0.00 3.53
732 923 1.672356 CTTGCACTCGGGAGGTTGG 60.672 63.158 0.00 0.00 0.00 3.77
733 924 2.328099 GCTTGCACTCGGGAGGTTG 61.328 63.158 0.00 0.00 0.00 3.77
734 925 2.032681 GCTTGCACTCGGGAGGTT 59.967 61.111 0.00 0.00 0.00 3.50
739 930 4.379243 AGTCGGCTTGCACTCGGG 62.379 66.667 0.00 0.00 0.00 5.14
815 1006 7.194050 AGGGGTCCTAATCGGATTATTATACA 58.806 38.462 10.67 0.00 45.44 2.29
826 1017 0.106149 CGGAAAGGGGTCCTAATCGG 59.894 60.000 0.00 0.00 35.31 4.18
830 1021 1.272807 CAGTCGGAAAGGGGTCCTAA 58.727 55.000 0.00 0.00 35.31 2.69
831 1022 0.616679 CCAGTCGGAAAGGGGTCCTA 60.617 60.000 0.00 0.00 35.31 2.94
832 1023 1.918800 CCAGTCGGAAAGGGGTCCT 60.919 63.158 0.00 0.00 35.31 3.85
833 1024 2.669240 CCAGTCGGAAAGGGGTCC 59.331 66.667 0.00 0.00 0.00 4.46
835 1026 1.918800 CTCCCAGTCGGAAAGGGGT 60.919 63.158 14.13 0.00 41.40 4.95
836 1027 1.918800 ACTCCCAGTCGGAAAGGGG 60.919 63.158 14.13 9.25 41.40 4.79
837 1028 1.296715 CACTCCCAGTCGGAAAGGG 59.703 63.158 9.22 9.22 41.40 3.95
838 1029 1.296715 CCACTCCCAGTCGGAAAGG 59.703 63.158 0.00 0.00 41.40 3.11
839 1030 1.296715 CCCACTCCCAGTCGGAAAG 59.703 63.158 0.00 0.00 41.40 2.62
840 1031 2.890766 GCCCACTCCCAGTCGGAAA 61.891 63.158 0.00 0.00 41.40 3.13
867 1062 4.451150 CTTAGCGCTGCACCGGGA 62.451 66.667 22.90 0.00 0.00 5.14
979 1180 2.224378 TGGAGTGTGAGGAAGCTGAAAG 60.224 50.000 0.00 0.00 0.00 2.62
1031 1279 0.328258 ACTTACTTGGCTGCGGGAAT 59.672 50.000 0.00 0.00 0.00 3.01
1167 1445 8.961294 ACTGTCGAGAGTTATACTGTAGTATT 57.039 34.615 9.83 0.00 41.18 1.89
1168 1446 8.961294 AACTGTCGAGAGTTATACTGTAGTAT 57.039 34.615 24.96 9.31 43.15 2.12
1170 1448 8.961294 ATAACTGTCGAGAGTTATACTGTAGT 57.039 34.615 34.27 17.13 44.04 2.73
1171 1449 9.653067 CAATAACTGTCGAGAGTTATACTGTAG 57.347 37.037 34.90 21.49 44.75 2.74
1172 1450 9.170734 ACAATAACTGTCGAGAGTTATACTGTA 57.829 33.333 34.90 17.98 44.75 2.74
1173 1451 8.053026 ACAATAACTGTCGAGAGTTATACTGT 57.947 34.615 34.90 31.79 44.75 3.55
1174 1452 9.653067 CTACAATAACTGTCGAGAGTTATACTG 57.347 37.037 34.90 31.31 44.75 2.74
1175 1453 8.344098 GCTACAATAACTGTCGAGAGTTATACT 58.656 37.037 34.90 26.79 44.75 2.12
1176 1454 8.127327 TGCTACAATAACTGTCGAGAGTTATAC 58.873 37.037 34.90 24.70 44.75 1.47
1177 1455 8.127327 GTGCTACAATAACTGTCGAGAGTTATA 58.873 37.037 34.90 23.84 44.75 0.98
1178 1456 6.973474 GTGCTACAATAACTGTCGAGAGTTAT 59.027 38.462 31.57 31.57 46.57 1.89
1179 1457 6.150641 AGTGCTACAATAACTGTCGAGAGTTA 59.849 38.462 30.30 30.30 41.53 2.24
1186 1464 3.845178 TGGAGTGCTACAATAACTGTCG 58.155 45.455 0.00 0.00 39.64 4.35
1357 1719 2.348872 GCACGATCATGTAAATGCTCCG 60.349 50.000 0.00 0.00 0.00 4.63
1441 1804 9.265901 CTGGAGATTTATATCGTCAGAACAAAT 57.734 33.333 10.74 0.00 37.62 2.32
1514 1878 4.084900 GGAGTTGCGCAAAAGAAGAAAATG 60.085 41.667 26.87 0.00 0.00 2.32
1549 3171 4.813296 AATCGTCGAAAAGCTTTCAAGT 57.187 36.364 13.10 0.00 0.00 3.16
1606 3238 5.242838 CCCTCCAACACTTGCAAACTTTATA 59.757 40.000 0.00 0.00 0.00 0.98
1713 3703 8.706035 GCAACATAAATCAAGCATCCATTATTC 58.294 33.333 0.00 0.00 0.00 1.75
1750 3740 2.481969 GGTGCTGAGCATATCTTCGTCA 60.482 50.000 11.58 0.00 41.91 4.35
1761 3751 1.196766 ATCAGTGAGGGTGCTGAGCA 61.197 55.000 1.40 1.40 43.81 4.26
1786 3776 4.223923 ACTCTCCCCAAGATTGACAGTAAG 59.776 45.833 0.00 0.00 32.19 2.34
1795 3785 3.251484 TGAACTGACTCTCCCCAAGATT 58.749 45.455 0.00 0.00 32.19 2.40
1817 3807 2.290641 CACTTGTCCTTGTAGCCACAAC 59.709 50.000 0.00 0.00 39.75 3.32
1955 3945 3.439129 GCTTTGGTTAAAGACGCCATAGT 59.561 43.478 4.10 0.00 44.87 2.12
2100 4090 7.015487 TGAGATCCAAATCTTTCAACAAACCAT 59.985 33.333 0.00 0.00 42.46 3.55
2344 4335 6.035112 CGATTTTAAAGAGAGAGAAGGAACCG 59.965 42.308 0.00 0.00 0.00 4.44
2365 4356 2.203070 GAGCCCGGTGCATCGATT 60.203 61.111 23.56 5.32 44.83 3.34
2368 4359 3.197790 CTTGAGCCCGGTGCATCG 61.198 66.667 13.72 13.72 44.83 3.84
2377 4368 0.670854 GAACACGGAGTCTTGAGCCC 60.671 60.000 0.00 0.00 41.61 5.19
2385 4376 4.094590 TCTCGATTTCTAGAACACGGAGTC 59.905 45.833 21.88 2.61 41.61 3.36
2446 4437 9.674068 GTCTCCCATAAGAACTTCTCTAATTTT 57.326 33.333 0.00 0.00 32.46 1.82
2544 4535 1.195448 AGCGTTGCTGACAATTCGAAG 59.805 47.619 3.35 0.00 37.57 3.79
2548 4539 6.542852 TCTAAATAAGCGTTGCTGACAATTC 58.457 36.000 0.00 0.00 39.62 2.17
2555 4546 7.684670 TCACTTAATCTAAATAAGCGTTGCTG 58.315 34.615 0.00 0.00 39.62 4.41
2590 4581 4.762765 AGAGTATGTATGCCTCTTACTCCG 59.237 45.833 15.38 0.00 40.36 4.63
2598 4589 4.993584 CCAATGTGAGAGTATGTATGCCTC 59.006 45.833 0.00 0.00 0.00 4.70
2698 4877 9.895138 CACATCCATGATATAACTTCCATATCA 57.105 33.333 7.32 7.32 45.03 2.15
2769 4950 3.631145 TTGCAAGCACAGAAATGAGAC 57.369 42.857 0.00 0.00 0.00 3.36
2864 5099 2.956194 CTTGCTGAATGCGGTGCA 59.044 55.556 0.00 0.00 46.63 4.57
2934 5175 2.549754 GCTGCTACAAGAAAAGCTGTCA 59.450 45.455 0.00 0.00 39.20 3.58
2941 5182 3.754965 AGATGGTGCTGCTACAAGAAAA 58.245 40.909 0.00 0.00 0.00 2.29
3037 5278 4.097892 AGAACTTTCCGCTCAAATTTGTGT 59.902 37.500 17.47 0.00 0.00 3.72
3047 5288 5.685954 CCAAGTTTTAAAGAACTTTCCGCTC 59.314 40.000 2.99 0.00 45.05 5.03
3149 5401 4.790790 AGGATTCCTTCTTTCATGGTAGGT 59.209 41.667 0.00 0.00 0.00 3.08
3160 5412 4.953781 TTCCCATTGAGGATTCCTTCTT 57.046 40.909 6.68 0.00 41.22 2.52
3196 5456 0.723981 GAAGCATGTTGTCGGAGCTC 59.276 55.000 4.71 4.71 33.83 4.09
3205 5465 4.023450 TCAAGCTCTTTCAGAAGCATGTTG 60.023 41.667 0.00 0.00 32.75 3.33
3210 5470 4.083643 CGAATTCAAGCTCTTTCAGAAGCA 60.084 41.667 6.22 0.00 32.75 3.91
3226 5486 6.757897 AGTGATTTAAATCCAGCGAATTCA 57.242 33.333 22.42 1.73 34.50 2.57
3379 5647 7.613022 ACCATTTCTTGCTCATCTTTCTTCATA 59.387 33.333 0.00 0.00 0.00 2.15
3381 5649 5.771666 ACCATTTCTTGCTCATCTTTCTTCA 59.228 36.000 0.00 0.00 0.00 3.02
3480 5748 9.959721 ACATGGAGTATACAAACTGTTATTTCT 57.040 29.630 5.50 0.00 0.00 2.52
3482 5750 9.174166 GGACATGGAGTATACAAACTGTTATTT 57.826 33.333 5.50 0.00 0.00 1.40
3483 5751 8.548877 AGGACATGGAGTATACAAACTGTTATT 58.451 33.333 5.50 0.00 0.00 1.40
3484 5752 7.987458 CAGGACATGGAGTATACAAACTGTTAT 59.013 37.037 5.50 0.00 0.00 1.89
3485 5753 7.038587 ACAGGACATGGAGTATACAAACTGTTA 60.039 37.037 5.50 0.00 0.00 2.41
3486 5754 6.173339 CAGGACATGGAGTATACAAACTGTT 58.827 40.000 5.50 0.00 0.00 3.16
3487 5755 5.248477 ACAGGACATGGAGTATACAAACTGT 59.752 40.000 5.50 3.49 0.00 3.55
3488 5756 5.734720 ACAGGACATGGAGTATACAAACTG 58.265 41.667 5.50 4.62 0.00 3.16
3489 5757 6.173339 CAACAGGACATGGAGTATACAAACT 58.827 40.000 5.50 0.00 0.00 2.66
3490 5758 5.163754 GCAACAGGACATGGAGTATACAAAC 60.164 44.000 5.50 0.00 0.00 2.93
3491 5759 4.941263 GCAACAGGACATGGAGTATACAAA 59.059 41.667 5.50 0.00 0.00 2.83
3492 5760 4.225042 AGCAACAGGACATGGAGTATACAA 59.775 41.667 5.50 0.00 0.00 2.41
3493 5761 3.774766 AGCAACAGGACATGGAGTATACA 59.225 43.478 5.50 0.00 0.00 2.29
3494 5762 4.408182 AGCAACAGGACATGGAGTATAC 57.592 45.455 0.00 0.00 0.00 1.47
3495 5763 5.435686 AAAGCAACAGGACATGGAGTATA 57.564 39.130 0.00 0.00 0.00 1.47
3496 5764 4.307032 AAAGCAACAGGACATGGAGTAT 57.693 40.909 0.00 0.00 0.00 2.12
3497 5765 3.788227 AAAGCAACAGGACATGGAGTA 57.212 42.857 0.00 0.00 0.00 2.59
3498 5766 2.664402 AAAGCAACAGGACATGGAGT 57.336 45.000 0.00 0.00 0.00 3.85
3499 5767 6.949352 ATATTAAAGCAACAGGACATGGAG 57.051 37.500 0.00 0.00 0.00 3.86
3500 5768 6.321181 GGAATATTAAAGCAACAGGACATGGA 59.679 38.462 0.00 0.00 0.00 3.41
3501 5769 6.322201 AGGAATATTAAAGCAACAGGACATGG 59.678 38.462 0.00 0.00 0.00 3.66
3502 5770 7.338800 AGGAATATTAAAGCAACAGGACATG 57.661 36.000 0.00 0.00 0.00 3.21
3503 5771 6.260936 CGAGGAATATTAAAGCAACAGGACAT 59.739 38.462 0.00 0.00 0.00 3.06
3504 5772 5.584649 CGAGGAATATTAAAGCAACAGGACA 59.415 40.000 0.00 0.00 0.00 4.02
3505 5773 5.585047 ACGAGGAATATTAAAGCAACAGGAC 59.415 40.000 0.00 0.00 0.00 3.85
3506 5774 5.741011 ACGAGGAATATTAAAGCAACAGGA 58.259 37.500 0.00 0.00 0.00 3.86
3507 5775 6.258160 CAACGAGGAATATTAAAGCAACAGG 58.742 40.000 0.00 0.00 0.00 4.00
3508 5776 5.739161 GCAACGAGGAATATTAAAGCAACAG 59.261 40.000 0.00 0.00 0.00 3.16
3509 5777 5.392595 GGCAACGAGGAATATTAAAGCAACA 60.393 40.000 0.00 0.00 0.00 3.33
3510 5778 5.034797 GGCAACGAGGAATATTAAAGCAAC 58.965 41.667 0.00 0.00 0.00 4.17
3511 5779 4.947388 AGGCAACGAGGAATATTAAAGCAA 59.053 37.500 0.00 0.00 46.39 3.91
3512 5780 4.335315 CAGGCAACGAGGAATATTAAAGCA 59.665 41.667 0.00 0.00 46.39 3.91
3513 5781 4.574828 TCAGGCAACGAGGAATATTAAAGC 59.425 41.667 0.00 0.00 46.39 3.51
3514 5782 5.276868 CGTCAGGCAACGAGGAATATTAAAG 60.277 44.000 6.60 0.00 45.37 1.85
3515 5783 4.569162 CGTCAGGCAACGAGGAATATTAAA 59.431 41.667 6.60 0.00 45.37 1.52
3516 5784 4.116961 CGTCAGGCAACGAGGAATATTAA 58.883 43.478 6.60 0.00 45.37 1.40
3517 5785 3.491964 CCGTCAGGCAACGAGGAATATTA 60.492 47.826 13.12 0.00 45.37 0.98
3518 5786 2.550978 CGTCAGGCAACGAGGAATATT 58.449 47.619 6.60 0.00 45.37 1.28
3519 5787 1.202533 CCGTCAGGCAACGAGGAATAT 60.203 52.381 13.12 0.00 45.37 1.28
3520 5788 0.174845 CCGTCAGGCAACGAGGAATA 59.825 55.000 13.12 0.00 45.37 1.75
3521 5789 1.079127 CCGTCAGGCAACGAGGAAT 60.079 57.895 13.12 0.00 45.37 3.01
3522 5790 2.342279 CCGTCAGGCAACGAGGAA 59.658 61.111 13.12 0.00 45.37 3.36
3532 5800 1.227205 GAGATGCTCAGCCGTCAGG 60.227 63.158 0.00 0.00 41.62 3.86
3533 5801 1.514553 TGAGATGCTCAGCCGTCAG 59.485 57.895 0.00 0.00 35.39 3.51
3534 5802 3.698765 TGAGATGCTCAGCCGTCA 58.301 55.556 0.00 0.00 35.39 4.35
3541 5809 4.402474 TCGAAACCTAATCTGAGATGCTCA 59.598 41.667 0.00 0.00 38.25 4.26
3542 5810 4.742659 GTCGAAACCTAATCTGAGATGCTC 59.257 45.833 0.00 0.00 0.00 4.26
3543 5811 4.404073 AGTCGAAACCTAATCTGAGATGCT 59.596 41.667 0.00 0.00 0.00 3.79
3544 5812 4.688021 AGTCGAAACCTAATCTGAGATGC 58.312 43.478 0.00 0.00 0.00 3.91
3545 5813 5.976534 CAGAGTCGAAACCTAATCTGAGATG 59.023 44.000 0.00 0.00 37.03 2.90
3546 5814 5.451242 GCAGAGTCGAAACCTAATCTGAGAT 60.451 44.000 4.17 0.00 37.03 2.75
3547 5815 4.142359 GCAGAGTCGAAACCTAATCTGAGA 60.142 45.833 4.17 0.00 37.03 3.27
3548 5816 4.109050 GCAGAGTCGAAACCTAATCTGAG 58.891 47.826 4.17 0.00 37.03 3.35
3549 5817 3.509967 TGCAGAGTCGAAACCTAATCTGA 59.490 43.478 4.17 0.00 37.03 3.27
3550 5818 3.614616 GTGCAGAGTCGAAACCTAATCTG 59.385 47.826 0.00 0.00 37.74 2.90
3551 5819 3.258372 TGTGCAGAGTCGAAACCTAATCT 59.742 43.478 0.00 0.00 0.00 2.40
3552 5820 3.585862 TGTGCAGAGTCGAAACCTAATC 58.414 45.455 0.00 0.00 0.00 1.75
3553 5821 3.678056 TGTGCAGAGTCGAAACCTAAT 57.322 42.857 0.00 0.00 0.00 1.73
3554 5822 3.258372 AGATGTGCAGAGTCGAAACCTAA 59.742 43.478 0.00 0.00 0.00 2.69
3555 5823 2.826128 AGATGTGCAGAGTCGAAACCTA 59.174 45.455 0.00 0.00 0.00 3.08
3556 5824 1.620819 AGATGTGCAGAGTCGAAACCT 59.379 47.619 0.00 0.00 0.00 3.50
3557 5825 2.086054 AGATGTGCAGAGTCGAAACC 57.914 50.000 0.00 0.00 0.00 3.27
3558 5826 4.024893 TCAAAAGATGTGCAGAGTCGAAAC 60.025 41.667 0.00 0.00 0.00 2.78
3559 5827 4.126437 TCAAAAGATGTGCAGAGTCGAAA 58.874 39.130 0.00 0.00 0.00 3.46
3560 5828 3.727726 TCAAAAGATGTGCAGAGTCGAA 58.272 40.909 0.00 0.00 0.00 3.71
3561 5829 3.385193 TCAAAAGATGTGCAGAGTCGA 57.615 42.857 0.00 0.00 0.00 4.20
3562 5830 3.434641 ACATCAAAAGATGTGCAGAGTCG 59.565 43.478 10.06 0.00 43.42 4.18
3563 5831 5.368256 AACATCAAAAGATGTGCAGAGTC 57.632 39.130 11.43 0.00 44.19 3.36
3564 5832 6.656270 TGATAACATCAAAAGATGTGCAGAGT 59.344 34.615 11.43 0.00 44.19 3.24
3565 5833 7.080353 TGATAACATCAAAAGATGTGCAGAG 57.920 36.000 11.43 0.00 44.19 3.35
3566 5834 7.451501 TTGATAACATCAAAAGATGTGCAGA 57.548 32.000 11.43 0.00 45.57 4.26
3578 5846 6.876789 TCGAGCTTACCTTTTGATAACATCAA 59.123 34.615 0.00 0.00 46.77 2.57
3579 5847 6.403049 TCGAGCTTACCTTTTGATAACATCA 58.597 36.000 0.00 0.00 37.55 3.07
3580 5848 6.757010 TCTCGAGCTTACCTTTTGATAACATC 59.243 38.462 7.81 0.00 0.00 3.06
3581 5849 6.640518 TCTCGAGCTTACCTTTTGATAACAT 58.359 36.000 7.81 0.00 0.00 2.71
3582 5850 6.032956 TCTCGAGCTTACCTTTTGATAACA 57.967 37.500 7.81 0.00 0.00 2.41
3583 5851 6.100668 ACTCTCGAGCTTACCTTTTGATAAC 58.899 40.000 7.81 0.00 0.00 1.89
3584 5852 6.282199 ACTCTCGAGCTTACCTTTTGATAA 57.718 37.500 7.81 0.00 0.00 1.75
3585 5853 5.916661 ACTCTCGAGCTTACCTTTTGATA 57.083 39.130 7.81 0.00 0.00 2.15
3586 5854 4.810191 ACTCTCGAGCTTACCTTTTGAT 57.190 40.909 7.81 0.00 0.00 2.57
3587 5855 4.038763 TCAACTCTCGAGCTTACCTTTTGA 59.961 41.667 7.81 4.48 0.00 2.69
3588 5856 4.307432 TCAACTCTCGAGCTTACCTTTTG 58.693 43.478 7.81 2.25 0.00 2.44
3589 5857 4.602340 TCAACTCTCGAGCTTACCTTTT 57.398 40.909 7.81 0.00 0.00 2.27
3590 5858 4.810191 ATCAACTCTCGAGCTTACCTTT 57.190 40.909 7.81 0.00 0.00 3.11
3591 5859 4.810191 AATCAACTCTCGAGCTTACCTT 57.190 40.909 7.81 0.00 0.00 3.50
3592 5860 4.810191 AAATCAACTCTCGAGCTTACCT 57.190 40.909 7.81 0.00 0.00 3.08
3593 5861 5.864628 AAAAATCAACTCTCGAGCTTACC 57.135 39.130 7.81 0.00 0.00 2.85
3594 5862 9.084164 TGTATAAAAATCAACTCTCGAGCTTAC 57.916 33.333 7.81 0.00 0.00 2.34
3595 5863 9.647797 TTGTATAAAAATCAACTCTCGAGCTTA 57.352 29.630 7.81 0.00 0.00 3.09
3596 5864 8.547967 TTGTATAAAAATCAACTCTCGAGCTT 57.452 30.769 7.81 0.00 0.00 3.74
3597 5865 8.443937 GTTTGTATAAAAATCAACTCTCGAGCT 58.556 33.333 7.81 0.00 0.00 4.09
3598 5866 8.443937 AGTTTGTATAAAAATCAACTCTCGAGC 58.556 33.333 7.81 0.00 0.00 5.03
3700 5968 8.363761 ACTCCTAGTTATTAGTGTTAGCAACT 57.636 34.615 0.00 0.00 0.00 3.16
3709 5977 8.696374 TGGAAGATGAACTCCTAGTTATTAGTG 58.304 37.037 0.00 0.00 38.80 2.74
3804 6072 5.522460 GGAGATTTGGCATGTCAATTCAATG 59.478 40.000 27.55 0.00 32.54 2.82
3805 6073 5.667466 GGAGATTTGGCATGTCAATTCAAT 58.333 37.500 27.55 14.35 32.54 2.57
3825 6094 5.147865 CAAGTACTAATCTATCACGCGGAG 58.852 45.833 12.47 1.99 0.00 4.63
3880 6149 8.431910 TCCCAGGAAGAGGTTAATACATATAC 57.568 38.462 0.00 0.00 0.00 1.47
3905 6174 7.001674 TCAAACCATTACACATGTAGGTCTTT 58.998 34.615 0.00 0.00 30.60 2.52
3945 6214 3.819564 TTTGACTATCTACATGCCGCT 57.180 42.857 0.00 0.00 0.00 5.52
3972 6241 8.134895 GCAGATTTAATTTCACCATCGGAATAA 58.865 33.333 0.00 0.00 0.00 1.40
3978 6247 7.816945 AAAAGCAGATTTAATTTCACCATCG 57.183 32.000 0.00 0.00 0.00 3.84
4003 6272 5.575157 TGGAGTGATAAAAGGGCATGTAAA 58.425 37.500 0.00 0.00 0.00 2.01
4012 6281 6.588719 TTCACCATTTGGAGTGATAAAAGG 57.411 37.500 3.01 0.00 42.32 3.11
4121 6390 2.165319 AGCAAGACGTAAAGGGTCAC 57.835 50.000 0.00 0.00 36.87 3.67
4160 6429 5.645067 CAGCAGAGGAAAAGACATGAATACA 59.355 40.000 0.00 0.00 0.00 2.29
4161 6430 5.645497 ACAGCAGAGGAAAAGACATGAATAC 59.355 40.000 0.00 0.00 0.00 1.89
4179 6448 1.196354 GTCAGTTGCAGCTTACAGCAG 59.804 52.381 9.71 0.00 45.56 4.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.