Multiple sequence alignment - TraesCS5B01G527000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G527000 chr5B 100.000 3293 0 0 1 3293 686200108 686203400 0.000000e+00 6082.0
1 TraesCS5B01G527000 chr5B 93.494 1491 77 12 1599 3080 686342922 686344401 0.000000e+00 2198.0
2 TraesCS5B01G527000 chr5B 85.893 1517 188 14 998 2493 686432236 686433747 0.000000e+00 1592.0
3 TraesCS5B01G527000 chr5B 78.403 1315 252 20 1010 2319 686769957 686771244 0.000000e+00 826.0
4 TraesCS5B01G527000 chr5B 87.302 126 9 2 2779 2903 686433923 686434042 1.590000e-28 137.0
5 TraesCS5B01G527000 chr4A 92.086 2464 138 22 470 2910 625166770 625164341 0.000000e+00 3417.0
6 TraesCS5B01G527000 chr4A 84.256 1950 239 49 582 2493 625078038 625076119 0.000000e+00 1838.0
7 TraesCS5B01G527000 chr4A 79.635 1262 242 12 999 2251 624369657 624370912 0.000000e+00 893.0
8 TraesCS5B01G527000 chr4A 88.803 259 19 4 4 254 625167051 625166795 3.190000e-80 309.0
9 TraesCS5B01G527000 chr4A 81.761 159 11 6 2779 2933 625075940 625075796 2.080000e-22 117.0
10 TraesCS5B01G527000 chr5D 92.988 2125 121 10 845 2951 544148810 544150924 0.000000e+00 3073.0
11 TraesCS5B01G527000 chr5D 84.025 1953 251 44 580 2493 544231047 544232977 0.000000e+00 1821.0
12 TraesCS5B01G527000 chr5D 79.323 1330 236 22 999 2319 544481609 544482908 0.000000e+00 896.0
13 TraesCS5B01G527000 chr5D 78.803 1236 246 13 999 2226 544459877 544461104 0.000000e+00 817.0
14 TraesCS5B01G527000 chr5D 87.342 158 9 3 1 149 544148417 544148572 1.570000e-38 171.0
15 TraesCS5B01G527000 chr5D 93.617 94 4 2 252 343 240428127 240428034 4.430000e-29 139.0
16 TraesCS5B01G527000 chr5D 89.623 106 7 4 252 353 175298725 175298830 7.410000e-27 132.0
17 TraesCS5B01G527000 chr5D 80.795 151 8 13 6 152 544213971 544214104 7.520000e-17 99.0
18 TraesCS5B01G527000 chr5D 82.075 106 12 5 149 247 255417027 255417132 2.110000e-12 84.2
19 TraesCS5B01G527000 chr5D 85.000 80 8 3 2488 2564 123460004 123460082 9.800000e-11 78.7
20 TraesCS5B01G527000 chr7D 92.647 340 21 3 2956 3293 541970687 541970350 1.370000e-133 486.0
21 TraesCS5B01G527000 chr7D 91.176 102 6 3 250 349 141292176 141292076 5.730000e-28 135.0
22 TraesCS5B01G527000 chr7D 83.962 106 10 4 149 247 374239918 374240023 9.730000e-16 95.3
23 TraesCS5B01G527000 chr6D 92.836 335 22 2 2956 3288 436731065 436731399 4.940000e-133 484.0
24 TraesCS5B01G527000 chr6D 83.962 106 10 4 149 247 28776226 28776121 9.730000e-16 95.3
25 TraesCS5B01G527000 chr2A 91.254 343 27 3 2954 3293 51660560 51660218 6.440000e-127 464.0
26 TraesCS5B01G527000 chr3B 91.228 342 26 3 2956 3293 765087621 765087280 2.310000e-126 462.0
27 TraesCS5B01G527000 chr3B 93.750 96 6 0 251 346 820445923 820446018 9.520000e-31 145.0
28 TraesCS5B01G527000 chr3B 86.486 74 7 2 2488 2558 793346615 793346688 9.800000e-11 78.7
29 TraesCS5B01G527000 chr3B 100.000 33 0 0 795 827 709236297 709236265 9.870000e-06 62.1
30 TraesCS5B01G527000 chr3B 97.143 35 0 1 796 830 526282364 526282331 1.280000e-04 58.4
31 TraesCS5B01G527000 chr1B 91.176 340 24 4 2956 3293 352877728 352878063 1.080000e-124 457.0
32 TraesCS5B01G527000 chr1B 91.429 70 4 1 2488 2555 160321086 160321017 9.730000e-16 95.3
33 TraesCS5B01G527000 chr3A 91.018 334 29 1 2956 3288 531696366 531696699 1.800000e-122 449.0
34 TraesCS5B01G527000 chr3A 93.220 59 3 1 2504 2562 478955263 478955206 5.850000e-13 86.1
35 TraesCS5B01G527000 chr2D 90.855 339 25 5 2957 3293 535300224 535300558 1.800000e-122 449.0
36 TraesCS5B01G527000 chr2D 90.116 344 24 5 2952 3293 558473379 558473714 3.900000e-119 438.0
37 TraesCS5B01G527000 chr2D 100.000 29 0 0 799 827 626409013 626409041 2.000000e-03 54.7
38 TraesCS5B01G527000 chr1A 90.407 344 26 6 2955 3293 409958126 409957785 2.330000e-121 446.0
39 TraesCS5B01G527000 chr1A 91.429 70 4 1 2488 2555 106220622 106220553 9.730000e-16 95.3
40 TraesCS5B01G527000 chr1A 88.571 70 6 2 2489 2556 581838140 581838209 2.110000e-12 84.2
41 TraesCS5B01G527000 chr1A 80.870 115 13 4 149 254 434422939 434422825 7.570000e-12 82.4
42 TraesCS5B01G527000 chr6B 93.684 95 5 1 253 346 216509758 216509852 1.230000e-29 141.0
43 TraesCS5B01G527000 chr1D 92.857 98 5 1 253 348 106843292 106843195 1.230000e-29 141.0
44 TraesCS5B01G527000 chr1D 89.623 106 7 3 235 340 47644841 47644740 7.410000e-27 132.0
45 TraesCS5B01G527000 chr1D 97.143 35 0 1 796 830 54014289 54014322 1.280000e-04 58.4
46 TraesCS5B01G527000 chr7B 89.524 105 11 0 234 338 228390954 228390850 2.060000e-27 134.0
47 TraesCS5B01G527000 chr7B 83.962 106 10 4 149 247 129806025 129805920 9.730000e-16 95.3
48 TraesCS5B01G527000 chr2B 84.252 127 17 2 212 337 525255139 525255263 1.600000e-23 121.0
49 TraesCS5B01G527000 chr2B 95.000 40 0 2 795 832 640377820 640377859 9.870000e-06 62.1
50 TraesCS5B01G527000 chr4D 83.962 106 10 4 149 247 439821863 439821758 9.730000e-16 95.3
51 TraesCS5B01G527000 chr4D 82.075 106 12 5 149 247 3006447 3006552 2.110000e-12 84.2
52 TraesCS5B01G527000 chr4D 97.222 36 0 1 791 826 58159363 58159397 3.550000e-05 60.2
53 TraesCS5B01G527000 chr3D 83.673 98 11 5 372 467 455872148 455872054 1.630000e-13 87.9
54 TraesCS5B01G527000 chr7A 83.168 101 10 3 154 247 150416836 150416736 5.850000e-13 86.1
55 TraesCS5B01G527000 chr7A 100.000 33 0 0 795 827 563255532 563255564 9.870000e-06 62.1
56 TraesCS5B01G527000 chr4B 97.143 35 1 0 793 827 19987493 19987527 3.550000e-05 60.2
57 TraesCS5B01G527000 chr5A 97.143 35 0 1 552 585 703380942 703380976 1.280000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G527000 chr5B 686200108 686203400 3292 False 6082.0 6082 100.0000 1 3293 1 chr5B.!!$F1 3292
1 TraesCS5B01G527000 chr5B 686342922 686344401 1479 False 2198.0 2198 93.4940 1599 3080 1 chr5B.!!$F2 1481
2 TraesCS5B01G527000 chr5B 686432236 686434042 1806 False 864.5 1592 86.5975 998 2903 2 chr5B.!!$F4 1905
3 TraesCS5B01G527000 chr5B 686769957 686771244 1287 False 826.0 826 78.4030 1010 2319 1 chr5B.!!$F3 1309
4 TraesCS5B01G527000 chr4A 625164341 625167051 2710 True 1863.0 3417 90.4445 4 2910 2 chr4A.!!$R2 2906
5 TraesCS5B01G527000 chr4A 625075796 625078038 2242 True 977.5 1838 83.0085 582 2933 2 chr4A.!!$R1 2351
6 TraesCS5B01G527000 chr4A 624369657 624370912 1255 False 893.0 893 79.6350 999 2251 1 chr4A.!!$F1 1252
7 TraesCS5B01G527000 chr5D 544231047 544232977 1930 False 1821.0 1821 84.0250 580 2493 1 chr5D.!!$F5 1913
8 TraesCS5B01G527000 chr5D 544148417 544150924 2507 False 1622.0 3073 90.1650 1 2951 2 chr5D.!!$F8 2950
9 TraesCS5B01G527000 chr5D 544481609 544482908 1299 False 896.0 896 79.3230 999 2319 1 chr5D.!!$F7 1320
10 TraesCS5B01G527000 chr5D 544459877 544461104 1227 False 817.0 817 78.8030 999 2226 1 chr5D.!!$F6 1227

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
419 433 0.097674 CAGACGGCATGTAAAGCAGC 59.902 55.0 0.0 0.0 0.0 5.25 F
1314 1391 0.038526 TCGGCTCCAACTCTTTCGTC 60.039 55.0 0.0 0.0 0.0 4.20 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2046 2171 0.322008 GGGTGTTGAAGCTCCCAGAG 60.322 60.0 1.03 0.0 40.79 3.35 R
2334 2464 0.814457 GAGTCTCTGATGTGCTCCGT 59.186 55.0 0.00 0.0 0.00 4.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
78 83 8.357402 GGAAATATCCTCTCTCTCTTACTCAAC 58.643 40.741 0.00 0.00 42.93 3.18
157 167 3.539604 TCGTCTAGTTGCTACTACCTCC 58.460 50.000 3.76 0.00 35.78 4.30
162 172 1.471684 AGTTGCTACTACCTCCGTTCG 59.528 52.381 0.00 0.00 31.21 3.95
259 273 8.901472 TCTACAATATCAAGCATATACTCCCT 57.099 34.615 0.00 0.00 0.00 4.20
260 274 8.972127 TCTACAATATCAAGCATATACTCCCTC 58.028 37.037 0.00 0.00 0.00 4.30
261 275 7.805083 ACAATATCAAGCATATACTCCCTCT 57.195 36.000 0.00 0.00 0.00 3.69
262 276 7.619050 ACAATATCAAGCATATACTCCCTCTG 58.381 38.462 0.00 0.00 0.00 3.35
263 277 7.236432 ACAATATCAAGCATATACTCCCTCTGT 59.764 37.037 0.00 0.00 0.00 3.41
264 278 5.736951 ATCAAGCATATACTCCCTCTGTC 57.263 43.478 0.00 0.00 0.00 3.51
265 279 3.898123 TCAAGCATATACTCCCTCTGTCC 59.102 47.826 0.00 0.00 0.00 4.02
266 280 2.896039 AGCATATACTCCCTCTGTCCC 58.104 52.381 0.00 0.00 0.00 4.46
267 281 2.180086 AGCATATACTCCCTCTGTCCCA 59.820 50.000 0.00 0.00 0.00 4.37
268 282 3.177228 GCATATACTCCCTCTGTCCCAT 58.823 50.000 0.00 0.00 0.00 4.00
269 283 4.045974 AGCATATACTCCCTCTGTCCCATA 59.954 45.833 0.00 0.00 0.00 2.74
270 284 4.777896 GCATATACTCCCTCTGTCCCATAA 59.222 45.833 0.00 0.00 0.00 1.90
271 285 5.426833 GCATATACTCCCTCTGTCCCATAAT 59.573 44.000 0.00 0.00 0.00 1.28
272 286 6.611642 GCATATACTCCCTCTGTCCCATAATA 59.388 42.308 0.00 0.00 0.00 0.98
273 287 7.418025 GCATATACTCCCTCTGTCCCATAATAC 60.418 44.444 0.00 0.00 0.00 1.89
274 288 4.280789 ACTCCCTCTGTCCCATAATACA 57.719 45.455 0.00 0.00 0.00 2.29
275 289 4.631234 ACTCCCTCTGTCCCATAATACAA 58.369 43.478 0.00 0.00 0.00 2.41
276 290 4.656112 ACTCCCTCTGTCCCATAATACAAG 59.344 45.833 0.00 0.00 0.00 3.16
277 291 4.890988 TCCCTCTGTCCCATAATACAAGA 58.109 43.478 0.00 0.00 0.00 3.02
278 292 4.901849 TCCCTCTGTCCCATAATACAAGAG 59.098 45.833 0.00 0.00 0.00 2.85
279 293 4.503991 CCCTCTGTCCCATAATACAAGAGC 60.504 50.000 0.00 0.00 0.00 4.09
280 294 4.302455 CTCTGTCCCATAATACAAGAGCG 58.698 47.826 0.00 0.00 0.00 5.03
281 295 3.704566 TCTGTCCCATAATACAAGAGCGT 59.295 43.478 0.00 0.00 0.00 5.07
282 296 4.161565 TCTGTCCCATAATACAAGAGCGTT 59.838 41.667 0.00 0.00 0.00 4.84
283 297 4.439057 TGTCCCATAATACAAGAGCGTTC 58.561 43.478 0.00 0.00 0.00 3.95
284 298 4.161565 TGTCCCATAATACAAGAGCGTTCT 59.838 41.667 0.00 0.00 34.29 3.01
285 299 5.116882 GTCCCATAATACAAGAGCGTTCTT 58.883 41.667 8.90 8.90 44.45 2.52
294 308 3.728076 AAGAGCGTTCTTGACACTACA 57.272 42.857 14.17 0.00 42.04 2.74
295 309 3.014604 AGAGCGTTCTTGACACTACAC 57.985 47.619 0.00 0.00 0.00 2.90
296 310 2.623889 AGAGCGTTCTTGACACTACACT 59.376 45.455 0.00 0.00 0.00 3.55
297 311 3.819337 AGAGCGTTCTTGACACTACACTA 59.181 43.478 0.00 0.00 0.00 2.74
298 312 4.083217 AGAGCGTTCTTGACACTACACTAG 60.083 45.833 0.00 0.00 0.00 2.57
299 313 3.568853 AGCGTTCTTGACACTACACTAGT 59.431 43.478 0.00 0.00 40.28 2.57
312 326 4.743644 ACTACACTAGTGTCAAAAACGCTC 59.256 41.667 31.11 0.00 45.69 5.03
313 327 3.793559 ACACTAGTGTCAAAAACGCTCT 58.206 40.909 22.95 0.00 45.69 4.09
314 328 4.189231 ACACTAGTGTCAAAAACGCTCTT 58.811 39.130 22.95 0.00 45.69 2.85
315 329 5.353938 ACACTAGTGTCAAAAACGCTCTTA 58.646 37.500 22.95 0.00 45.69 2.10
316 330 5.989777 ACACTAGTGTCAAAAACGCTCTTAT 59.010 36.000 22.95 0.00 45.69 1.73
317 331 7.149973 ACACTAGTGTCAAAAACGCTCTTATA 58.850 34.615 22.95 0.00 45.69 0.98
318 332 7.817962 ACACTAGTGTCAAAAACGCTCTTATAT 59.182 33.333 22.95 0.00 45.69 0.86
319 333 8.656849 CACTAGTGTCAAAAACGCTCTTATATT 58.343 33.333 15.06 0.00 45.69 1.28
320 334 9.865321 ACTAGTGTCAAAAACGCTCTTATATTA 57.135 29.630 0.00 0.00 45.69 0.98
323 337 8.612619 AGTGTCAAAAACGCTCTTATATTATGG 58.387 33.333 0.00 0.00 45.69 2.74
324 338 7.855904 GTGTCAAAAACGCTCTTATATTATGGG 59.144 37.037 0.00 0.00 35.42 4.00
325 339 7.771361 TGTCAAAAACGCTCTTATATTATGGGA 59.229 33.333 0.00 0.00 0.00 4.37
326 340 8.068380 GTCAAAAACGCTCTTATATTATGGGAC 58.932 37.037 0.00 0.00 0.00 4.46
327 341 6.780706 AAAACGCTCTTATATTATGGGACG 57.219 37.500 0.00 0.00 0.00 4.79
328 342 5.717078 AACGCTCTTATATTATGGGACGA 57.283 39.130 0.00 0.00 0.00 4.20
329 343 5.717078 ACGCTCTTATATTATGGGACGAA 57.283 39.130 0.00 0.00 0.00 3.85
330 344 5.710984 ACGCTCTTATATTATGGGACGAAG 58.289 41.667 0.00 0.00 0.00 3.79
331 345 5.103000 CGCTCTTATATTATGGGACGAAGG 58.897 45.833 0.00 0.00 0.00 3.46
332 346 5.420409 GCTCTTATATTATGGGACGAAGGG 58.580 45.833 0.00 0.00 0.00 3.95
333 347 5.187186 GCTCTTATATTATGGGACGAAGGGA 59.813 44.000 0.00 0.00 0.00 4.20
334 348 6.628398 GCTCTTATATTATGGGACGAAGGGAG 60.628 46.154 0.00 0.00 0.00 4.30
335 349 6.320518 TCTTATATTATGGGACGAAGGGAGT 58.679 40.000 0.00 0.00 0.00 3.85
336 350 7.472741 TCTTATATTATGGGACGAAGGGAGTA 58.527 38.462 0.00 0.00 0.00 2.59
337 351 5.997384 ATATTATGGGACGAAGGGAGTAC 57.003 43.478 0.00 0.00 0.00 2.73
387 401 9.220767 ACTTCATCTATTCACTTTTACAAGGTC 57.779 33.333 0.00 0.00 33.82 3.85
388 402 9.442047 CTTCATCTATTCACTTTTACAAGGTCT 57.558 33.333 0.00 0.00 33.82 3.85
389 403 9.793259 TTCATCTATTCACTTTTACAAGGTCTT 57.207 29.630 0.00 0.00 33.82 3.01
390 404 9.219603 TCATCTATTCACTTTTACAAGGTCTTG 57.780 33.333 8.97 8.97 45.58 3.02
391 405 9.219603 CATCTATTCACTTTTACAAGGTCTTGA 57.780 33.333 16.55 0.00 42.93 3.02
392 406 9.793259 ATCTATTCACTTTTACAAGGTCTTGAA 57.207 29.630 16.55 5.00 42.93 2.69
393 407 9.621629 TCTATTCACTTTTACAAGGTCTTGAAA 57.378 29.630 16.55 9.86 42.93 2.69
395 409 8.926715 ATTCACTTTTACAAGGTCTTGAAAAC 57.073 30.769 16.55 0.00 42.93 2.43
396 410 7.455641 TCACTTTTACAAGGTCTTGAAAACA 57.544 32.000 16.55 4.24 42.93 2.83
397 411 8.062065 TCACTTTTACAAGGTCTTGAAAACAT 57.938 30.769 16.55 6.30 42.93 2.71
398 412 8.527810 TCACTTTTACAAGGTCTTGAAAACATT 58.472 29.630 16.55 0.00 42.93 2.71
399 413 9.150348 CACTTTTACAAGGTCTTGAAAACATTT 57.850 29.630 16.55 0.00 42.93 2.32
400 414 9.366216 ACTTTTACAAGGTCTTGAAAACATTTC 57.634 29.630 16.55 0.00 42.93 2.17
401 415 9.364989 CTTTTACAAGGTCTTGAAAACATTTCA 57.635 29.630 16.55 1.57 42.93 2.69
402 416 8.925161 TTTACAAGGTCTTGAAAACATTTCAG 57.075 30.769 16.55 2.15 42.93 3.02
403 417 6.773976 ACAAGGTCTTGAAAACATTTCAGA 57.226 33.333 16.55 4.08 42.93 3.27
404 418 6.564328 ACAAGGTCTTGAAAACATTTCAGAC 58.436 36.000 16.55 17.51 42.93 3.51
405 419 5.424121 AGGTCTTGAAAACATTTCAGACG 57.576 39.130 18.28 9.14 32.50 4.18
406 420 4.275936 AGGTCTTGAAAACATTTCAGACGG 59.724 41.667 18.28 8.60 32.50 4.79
407 421 3.975035 GTCTTGAAAACATTTCAGACGGC 59.025 43.478 14.00 0.00 0.00 5.68
408 422 3.629855 TCTTGAAAACATTTCAGACGGCA 59.370 39.130 5.75 0.00 0.00 5.69
409 423 4.278170 TCTTGAAAACATTTCAGACGGCAT 59.722 37.500 5.75 0.00 0.00 4.40
410 424 3.899734 TGAAAACATTTCAGACGGCATG 58.100 40.909 0.00 0.00 0.00 4.06
411 425 3.317711 TGAAAACATTTCAGACGGCATGT 59.682 39.130 0.00 0.00 0.00 3.21
412 426 4.517075 TGAAAACATTTCAGACGGCATGTA 59.483 37.500 0.00 0.00 0.00 2.29
413 427 5.009110 TGAAAACATTTCAGACGGCATGTAA 59.991 36.000 0.00 0.00 0.00 2.41
414 428 5.446143 AAACATTTCAGACGGCATGTAAA 57.554 34.783 0.00 0.00 0.00 2.01
415 429 4.685169 ACATTTCAGACGGCATGTAAAG 57.315 40.909 0.00 0.00 0.00 1.85
416 430 3.119849 ACATTTCAGACGGCATGTAAAGC 60.120 43.478 0.00 0.00 0.00 3.51
417 431 2.177394 TTCAGACGGCATGTAAAGCA 57.823 45.000 0.00 0.00 0.00 3.91
418 432 1.725641 TCAGACGGCATGTAAAGCAG 58.274 50.000 0.00 0.00 0.00 4.24
419 433 0.097674 CAGACGGCATGTAAAGCAGC 59.902 55.000 0.00 0.00 0.00 5.25
420 434 1.026718 AGACGGCATGTAAAGCAGCC 61.027 55.000 0.00 0.00 43.61 4.85
421 435 1.002134 ACGGCATGTAAAGCAGCCT 60.002 52.632 0.00 0.00 44.85 4.58
422 436 0.251916 ACGGCATGTAAAGCAGCCTA 59.748 50.000 0.00 0.00 44.85 3.93
423 437 1.134098 ACGGCATGTAAAGCAGCCTAT 60.134 47.619 0.00 0.00 44.85 2.57
424 438 1.949525 CGGCATGTAAAGCAGCCTATT 59.050 47.619 0.00 0.00 44.85 1.73
425 439 2.358898 CGGCATGTAAAGCAGCCTATTT 59.641 45.455 0.00 0.00 44.85 1.40
426 440 3.181487 CGGCATGTAAAGCAGCCTATTTT 60.181 43.478 0.00 0.00 44.85 1.82
427 441 4.363138 GGCATGTAAAGCAGCCTATTTTC 58.637 43.478 0.00 0.00 43.70 2.29
428 442 4.142182 GGCATGTAAAGCAGCCTATTTTCA 60.142 41.667 0.00 0.00 43.70 2.69
429 443 5.039333 GCATGTAAAGCAGCCTATTTTCAG 58.961 41.667 0.00 0.00 0.00 3.02
430 444 4.701956 TGTAAAGCAGCCTATTTTCAGC 57.298 40.909 0.00 0.00 0.00 4.26
431 445 4.335416 TGTAAAGCAGCCTATTTTCAGCT 58.665 39.130 0.00 0.00 37.32 4.24
440 454 6.502136 AGCCTATTTTCAGCTGTCTAAAAC 57.498 37.500 14.67 2.07 34.99 2.43
441 455 5.122396 AGCCTATTTTCAGCTGTCTAAAACG 59.878 40.000 14.67 8.08 34.99 3.60
442 456 5.121768 GCCTATTTTCAGCTGTCTAAAACGA 59.878 40.000 14.67 4.82 0.00 3.85
443 457 6.534934 CCTATTTTCAGCTGTCTAAAACGAC 58.465 40.000 14.67 0.00 34.52 4.34
444 458 6.369065 CCTATTTTCAGCTGTCTAAAACGACT 59.631 38.462 14.67 1.49 35.00 4.18
445 459 6.619801 ATTTTCAGCTGTCTAAAACGACTT 57.380 33.333 14.67 0.00 35.00 3.01
446 460 7.724305 ATTTTCAGCTGTCTAAAACGACTTA 57.276 32.000 14.67 0.00 35.00 2.24
447 461 7.724305 TTTTCAGCTGTCTAAAACGACTTAT 57.276 32.000 14.67 0.00 35.00 1.73
448 462 8.821147 TTTTCAGCTGTCTAAAACGACTTATA 57.179 30.769 14.67 0.00 35.00 0.98
449 463 8.821147 TTTCAGCTGTCTAAAACGACTTATAA 57.179 30.769 14.67 0.00 35.00 0.98
450 464 8.821147 TTCAGCTGTCTAAAACGACTTATAAA 57.179 30.769 14.67 0.00 35.00 1.40
451 465 8.462143 TCAGCTGTCTAAAACGACTTATAAAG 57.538 34.615 14.67 0.00 35.00 1.85
452 466 8.086522 TCAGCTGTCTAAAACGACTTATAAAGT 58.913 33.333 14.67 0.00 46.38 2.66
453 467 8.162880 CAGCTGTCTAAAACGACTTATAAAGTG 58.837 37.037 5.25 0.00 43.03 3.16
454 468 8.086522 AGCTGTCTAAAACGACTTATAAAGTGA 58.913 33.333 0.00 0.00 43.03 3.41
455 469 8.706035 GCTGTCTAAAACGACTTATAAAGTGAA 58.294 33.333 0.00 0.00 43.03 3.18
457 471 8.693504 TGTCTAAAACGACTTATAAAGTGAACG 58.306 33.333 0.00 0.00 43.03 3.95
458 472 8.158445 GTCTAAAACGACTTATAAAGTGAACGG 58.842 37.037 0.00 0.00 43.03 4.44
459 473 8.081633 TCTAAAACGACTTATAAAGTGAACGGA 58.918 33.333 0.00 0.00 43.03 4.69
460 474 6.701432 AAACGACTTATAAAGTGAACGGAG 57.299 37.500 0.00 0.00 43.03 4.63
461 475 4.741342 ACGACTTATAAAGTGAACGGAGG 58.259 43.478 0.00 0.00 43.03 4.30
462 476 4.110482 CGACTTATAAAGTGAACGGAGGG 58.890 47.826 0.00 0.00 43.03 4.30
463 477 4.142315 CGACTTATAAAGTGAACGGAGGGA 60.142 45.833 0.00 0.00 43.03 4.20
464 478 5.340439 ACTTATAAAGTGAACGGAGGGAG 57.660 43.478 0.00 0.00 41.01 4.30
465 479 4.776308 ACTTATAAAGTGAACGGAGGGAGT 59.224 41.667 0.00 0.00 41.01 3.85
466 480 5.954150 ACTTATAAAGTGAACGGAGGGAGTA 59.046 40.000 0.00 0.00 41.01 2.59
467 481 6.096564 ACTTATAAAGTGAACGGAGGGAGTAG 59.903 42.308 0.00 0.00 41.01 2.57
468 482 2.599408 AAGTGAACGGAGGGAGTAGA 57.401 50.000 0.00 0.00 0.00 2.59
469 483 2.830651 AGTGAACGGAGGGAGTAGAT 57.169 50.000 0.00 0.00 0.00 1.98
470 484 2.379972 AGTGAACGGAGGGAGTAGATG 58.620 52.381 0.00 0.00 0.00 2.90
471 485 2.025226 AGTGAACGGAGGGAGTAGATGA 60.025 50.000 0.00 0.00 0.00 2.92
472 486 2.959707 GTGAACGGAGGGAGTAGATGAT 59.040 50.000 0.00 0.00 0.00 2.45
478 492 8.503573 TGAACGGAGGGAGTAGATGATATATAT 58.496 37.037 0.00 0.00 0.00 0.86
480 494 8.046867 ACGGAGGGAGTAGATGATATATATGA 57.953 38.462 0.00 0.00 0.00 2.15
640 656 0.407528 TGCATTGCCCTAGGTTCCAA 59.592 50.000 8.29 8.48 0.00 3.53
690 710 2.604174 GGCCGAACTGTCCACAACG 61.604 63.158 0.00 0.00 0.00 4.10
749 772 1.056660 ATCCACAGGTTTCAGTCGGT 58.943 50.000 0.00 0.00 0.00 4.69
785 829 3.175594 ACCAAGATTGAATTGTGGCCAT 58.824 40.909 9.72 0.00 32.27 4.40
790 834 0.887247 TTGAATTGTGGCCATGGACG 59.113 50.000 18.40 0.00 0.00 4.79
791 835 0.964860 TGAATTGTGGCCATGGACGG 60.965 55.000 18.40 0.00 0.00 4.79
794 838 3.892740 TTGTGGCCATGGACGGACG 62.893 63.158 18.40 0.00 36.54 4.79
795 839 4.388499 GTGGCCATGGACGGACGT 62.388 66.667 18.40 0.00 36.54 4.34
796 840 2.680707 TGGCCATGGACGGACGTA 60.681 61.111 18.40 0.00 36.54 3.57
849 893 2.775911 AGAGCAGTAATGAAGCAGCA 57.224 45.000 0.00 0.00 0.00 4.41
927 982 1.335872 GCCAACAACACTTGGGAATCG 60.336 52.381 0.30 0.00 41.12 3.34
928 983 1.953686 CCAACAACACTTGGGAATCGT 59.046 47.619 0.00 0.00 37.62 3.73
945 1000 5.107491 GGAATCGTTTTGCATTCCAGAAAAC 60.107 40.000 9.20 4.14 45.28 2.43
960 1015 3.186613 CAGAAAACGTTTCTGGCCTAGTC 59.813 47.826 22.28 11.88 41.54 2.59
1007 1075 1.812922 CAGCTGAGTCCATGGCGAC 60.813 63.158 8.42 0.21 0.00 5.19
1314 1391 0.038526 TCGGCTCCAACTCTTTCGTC 60.039 55.000 0.00 0.00 0.00 4.20
1427 1504 1.079543 GCGAGCTCACACACCTCAT 60.080 57.895 15.40 0.00 0.00 2.90
1451 1528 2.461300 TTGGATTTGTCCACCAACCA 57.539 45.000 0.00 0.00 39.90 3.67
1524 1601 3.443045 GCCGCACACTCCAATGGG 61.443 66.667 0.00 0.00 0.00 4.00
1652 1729 1.589716 ATGCCACTTCTTGCTTCCGC 61.590 55.000 0.00 0.00 0.00 5.54
1683 1760 2.104111 CACAAACTACCTGACTGGGTGA 59.896 50.000 3.15 0.00 40.22 4.02
2046 2171 0.798776 CCGGAGACAACAATGCTGTC 59.201 55.000 8.60 8.60 42.95 3.51
2354 2486 0.813821 CGGAGCACATCAGAGACTCA 59.186 55.000 5.02 0.00 0.00 3.41
2370 2510 7.231519 TCAGAGACTCATGAACAGAAGAAGTTA 59.768 37.037 5.02 0.00 0.00 2.24
2371 2511 7.869937 CAGAGACTCATGAACAGAAGAAGTTAA 59.130 37.037 5.02 0.00 0.00 2.01
2406 2547 2.653543 AACCTAGGTACATGGACCCA 57.346 50.000 24.29 9.64 40.74 4.51
2430 2577 1.434188 TCTTGTTCCAAGCTGGGAGA 58.566 50.000 10.51 0.81 38.32 3.71
2453 2600 7.630082 AGAGCACCATAAAGACCTTTTGTATA 58.370 34.615 0.00 0.00 34.23 1.47
2502 2654 5.963176 TCCGCAACTATATACATCCGTAA 57.037 39.130 0.00 0.00 0.00 3.18
2528 2682 5.378332 TCCGTGTGGAAATTTCTAAAAGGA 58.622 37.500 20.51 20.51 42.85 3.36
2961 3122 0.251634 GGACAGGCTTTGGGAGAGAG 59.748 60.000 0.00 0.00 0.00 3.20
2963 3124 0.178891 ACAGGCTTTGGGAGAGAGGA 60.179 55.000 0.00 0.00 0.00 3.71
2973 3134 1.666054 GGAGAGAGGAATTGCAGCAG 58.334 55.000 0.00 0.00 0.00 4.24
3004 3165 7.170658 GCTCCACTGCTCTCTATATTTAAACAG 59.829 40.741 0.00 0.00 0.00 3.16
3080 3242 9.924650 GGGATATATATACACATTCCGAATACC 57.075 37.037 7.27 0.00 0.00 2.73
3081 3243 9.924650 GGATATATATACACATTCCGAATACCC 57.075 37.037 0.00 0.00 0.00 3.69
3082 3244 9.622004 GATATATATACACATTCCGAATACCCG 57.378 37.037 0.00 0.00 0.00 5.28
3083 3245 5.733620 ATATACACATTCCGAATACCCGT 57.266 39.130 0.00 0.00 0.00 5.28
3084 3246 2.018542 ACACATTCCGAATACCCGTG 57.981 50.000 7.45 7.45 0.00 4.94
3085 3247 1.295792 CACATTCCGAATACCCGTGG 58.704 55.000 0.00 0.00 0.00 4.94
3086 3248 0.463116 ACATTCCGAATACCCGTGGC 60.463 55.000 0.00 0.00 0.00 5.01
3087 3249 1.227438 ATTCCGAATACCCGTGGCG 60.227 57.895 0.00 0.00 0.00 5.69
3088 3250 1.963464 ATTCCGAATACCCGTGGCGT 61.963 55.000 0.00 0.00 0.00 5.68
3089 3251 2.839043 TTCCGAATACCCGTGGCGTG 62.839 60.000 0.00 0.00 0.00 5.34
3090 3252 2.125832 CGAATACCCGTGGCGTGT 60.126 61.111 0.00 0.00 0.00 4.49
3091 3253 1.738830 CGAATACCCGTGGCGTGTT 60.739 57.895 0.00 0.00 0.00 3.32
3092 3254 1.293267 CGAATACCCGTGGCGTGTTT 61.293 55.000 0.00 0.00 0.00 2.83
3093 3255 0.445043 GAATACCCGTGGCGTGTTTC 59.555 55.000 0.00 0.00 0.00 2.78
3094 3256 1.293267 AATACCCGTGGCGTGTTTCG 61.293 55.000 0.00 0.00 43.12 3.46
3095 3257 3.862394 TACCCGTGGCGTGTTTCGG 62.862 63.158 0.00 0.00 42.22 4.30
3097 3259 2.356075 CCGTGGCGTGTTTCGGTA 60.356 61.111 0.00 0.00 40.26 4.02
3098 3260 2.377310 CCGTGGCGTGTTTCGGTAG 61.377 63.158 0.00 0.00 40.26 3.18
3099 3261 1.372004 CGTGGCGTGTTTCGGTAGA 60.372 57.895 0.00 0.00 40.26 2.59
3100 3262 0.940519 CGTGGCGTGTTTCGGTAGAA 60.941 55.000 0.00 0.00 40.26 2.10
3101 3263 1.219646 GTGGCGTGTTTCGGTAGAAA 58.780 50.000 0.00 0.00 43.44 2.52
3102 3264 1.802365 GTGGCGTGTTTCGGTAGAAAT 59.198 47.619 0.00 0.00 46.64 2.17
3103 3265 2.070783 TGGCGTGTTTCGGTAGAAATC 58.929 47.619 0.00 0.00 46.64 2.17
3104 3266 2.289195 TGGCGTGTTTCGGTAGAAATCT 60.289 45.455 0.00 0.00 46.64 2.40
3105 3267 2.347755 GGCGTGTTTCGGTAGAAATCTC 59.652 50.000 0.00 0.00 46.64 2.75
3106 3268 2.347755 GCGTGTTTCGGTAGAAATCTCC 59.652 50.000 0.00 0.00 46.64 3.71
3107 3269 3.846360 CGTGTTTCGGTAGAAATCTCCT 58.154 45.455 0.00 0.00 46.64 3.69
3108 3270 4.243270 CGTGTTTCGGTAGAAATCTCCTT 58.757 43.478 0.00 0.00 46.64 3.36
3109 3271 4.689345 CGTGTTTCGGTAGAAATCTCCTTT 59.311 41.667 0.00 0.00 46.64 3.11
3110 3272 5.178809 CGTGTTTCGGTAGAAATCTCCTTTT 59.821 40.000 0.00 0.00 46.64 2.27
3111 3273 6.371389 GTGTTTCGGTAGAAATCTCCTTTTG 58.629 40.000 0.00 0.00 46.64 2.44
3112 3274 6.017357 GTGTTTCGGTAGAAATCTCCTTTTGT 60.017 38.462 0.00 0.00 46.64 2.83
3113 3275 6.544564 TGTTTCGGTAGAAATCTCCTTTTGTT 59.455 34.615 0.00 0.00 46.64 2.83
3114 3276 7.067737 TGTTTCGGTAGAAATCTCCTTTTGTTT 59.932 33.333 0.00 0.00 46.64 2.83
3115 3277 7.576861 TTCGGTAGAAATCTCCTTTTGTTTT 57.423 32.000 0.00 0.00 32.65 2.43
3116 3278 6.966021 TCGGTAGAAATCTCCTTTTGTTTTG 58.034 36.000 0.00 0.00 0.00 2.44
3117 3279 6.016610 TCGGTAGAAATCTCCTTTTGTTTTGG 60.017 38.462 0.00 0.00 0.00 3.28
3118 3280 6.455647 GGTAGAAATCTCCTTTTGTTTTGGG 58.544 40.000 0.00 0.00 0.00 4.12
3119 3281 4.960938 AGAAATCTCCTTTTGTTTTGGGC 58.039 39.130 0.00 0.00 0.00 5.36
3120 3282 4.655649 AGAAATCTCCTTTTGTTTTGGGCT 59.344 37.500 0.00 0.00 0.00 5.19
3121 3283 5.838521 AGAAATCTCCTTTTGTTTTGGGCTA 59.161 36.000 0.00 0.00 0.00 3.93
3122 3284 6.498303 AGAAATCTCCTTTTGTTTTGGGCTAT 59.502 34.615 0.00 0.00 0.00 2.97
3123 3285 7.673926 AGAAATCTCCTTTTGTTTTGGGCTATA 59.326 33.333 0.00 0.00 0.00 1.31
3124 3286 7.410120 AATCTCCTTTTGTTTTGGGCTATAG 57.590 36.000 0.00 0.00 0.00 1.31
3125 3287 6.134535 TCTCCTTTTGTTTTGGGCTATAGA 57.865 37.500 3.21 0.00 0.00 1.98
3126 3288 6.548321 TCTCCTTTTGTTTTGGGCTATAGAA 58.452 36.000 3.21 0.00 0.00 2.10
3127 3289 7.007723 TCTCCTTTTGTTTTGGGCTATAGAAA 58.992 34.615 3.21 0.00 0.00 2.52
3128 3290 7.507616 TCTCCTTTTGTTTTGGGCTATAGAAAA 59.492 33.333 3.21 0.00 0.00 2.29
3129 3291 8.024145 TCCTTTTGTTTTGGGCTATAGAAAAA 57.976 30.769 3.21 4.36 0.00 1.94
3163 3325 8.840200 TTCTGACACTATATAGGAGAAAAGGT 57.160 34.615 14.25 0.00 0.00 3.50
3164 3326 8.239038 TCTGACACTATATAGGAGAAAAGGTG 57.761 38.462 14.25 3.52 0.00 4.00
3165 3327 7.839705 TCTGACACTATATAGGAGAAAAGGTGT 59.160 37.037 14.25 6.53 37.96 4.16
3166 3328 7.782049 TGACACTATATAGGAGAAAAGGTGTG 58.218 38.462 14.25 2.38 35.88 3.82
3167 3329 6.583562 ACACTATATAGGAGAAAAGGTGTGC 58.416 40.000 14.25 0.00 34.72 4.57
3168 3330 5.992217 CACTATATAGGAGAAAAGGTGTGCC 59.008 44.000 14.25 0.00 0.00 5.01
3169 3331 5.665812 ACTATATAGGAGAAAAGGTGTGCCA 59.334 40.000 14.25 0.00 37.19 4.92
3170 3332 5.653255 ATATAGGAGAAAAGGTGTGCCAT 57.347 39.130 0.00 0.00 37.19 4.40
3171 3333 2.683211 AGGAGAAAAGGTGTGCCATT 57.317 45.000 0.00 0.00 37.19 3.16
3172 3334 2.962859 AGGAGAAAAGGTGTGCCATTT 58.037 42.857 0.00 0.00 38.26 2.32
3173 3335 3.308401 AGGAGAAAAGGTGTGCCATTTT 58.692 40.909 0.00 0.00 36.00 1.82
3174 3336 3.321968 AGGAGAAAAGGTGTGCCATTTTC 59.678 43.478 4.54 4.54 36.00 2.29
3175 3337 3.321968 GGAGAAAAGGTGTGCCATTTTCT 59.678 43.478 12.75 12.75 44.78 2.52
3176 3338 4.301628 GAGAAAAGGTGTGCCATTTTCTG 58.698 43.478 16.46 0.00 43.67 3.02
3177 3339 3.706086 AGAAAAGGTGTGCCATTTTCTGT 59.294 39.130 12.28 0.00 42.97 3.41
3178 3340 3.733443 AAAGGTGTGCCATTTTCTGTC 57.267 42.857 0.00 0.00 37.19 3.51
3179 3341 2.363306 AGGTGTGCCATTTTCTGTCA 57.637 45.000 0.00 0.00 37.19 3.58
3180 3342 2.233271 AGGTGTGCCATTTTCTGTCAG 58.767 47.619 0.00 0.00 37.19 3.51
3181 3343 2.158623 AGGTGTGCCATTTTCTGTCAGA 60.159 45.455 0.00 0.00 37.19 3.27
3182 3344 2.622942 GGTGTGCCATTTTCTGTCAGAA 59.377 45.455 11.36 11.36 31.11 3.02
3183 3345 3.068024 GGTGTGCCATTTTCTGTCAGAAA 59.932 43.478 21.59 21.59 37.29 2.52
3184 3346 4.262164 GGTGTGCCATTTTCTGTCAGAAAT 60.262 41.667 24.98 14.17 38.11 2.17
3185 3347 5.291971 GTGTGCCATTTTCTGTCAGAAATT 58.708 37.500 24.98 19.34 43.06 1.82
3186 3348 5.754890 GTGTGCCATTTTCTGTCAGAAATTT 59.245 36.000 24.98 14.79 43.06 1.82
3187 3349 6.922957 GTGTGCCATTTTCTGTCAGAAATTTA 59.077 34.615 24.98 13.38 43.06 1.40
3188 3350 7.599998 GTGTGCCATTTTCTGTCAGAAATTTAT 59.400 33.333 24.98 14.87 43.06 1.40
3189 3351 7.814107 TGTGCCATTTTCTGTCAGAAATTTATC 59.186 33.333 24.98 14.93 43.06 1.75
3190 3352 8.031277 GTGCCATTTTCTGTCAGAAATTTATCT 58.969 33.333 24.98 6.92 43.06 1.98
3191 3353 8.587608 TGCCATTTTCTGTCAGAAATTTATCTT 58.412 29.630 24.98 5.63 43.06 2.40
3192 3354 9.428097 GCCATTTTCTGTCAGAAATTTATCTTT 57.572 29.630 24.98 4.49 43.06 2.52
3242 3404 8.818141 ATTTCTTTTTCAGCTTTTTACTAGGC 57.182 30.769 0.00 0.00 0.00 3.93
3243 3405 6.327279 TCTTTTTCAGCTTTTTACTAGGCC 57.673 37.500 0.00 0.00 0.00 5.19
3244 3406 6.068670 TCTTTTTCAGCTTTTTACTAGGCCT 58.931 36.000 11.78 11.78 0.00 5.19
3245 3407 6.549736 TCTTTTTCAGCTTTTTACTAGGCCTT 59.450 34.615 12.58 0.00 0.00 4.35
3246 3408 7.722285 TCTTTTTCAGCTTTTTACTAGGCCTTA 59.278 33.333 12.58 0.00 0.00 2.69
3247 3409 7.448748 TTTTCAGCTTTTTACTAGGCCTTAG 57.551 36.000 12.58 9.22 35.39 2.18
3248 3410 5.099042 TCAGCTTTTTACTAGGCCTTAGG 57.901 43.478 12.58 4.33 33.42 2.69
3249 3411 4.781087 TCAGCTTTTTACTAGGCCTTAGGA 59.219 41.667 12.58 0.00 33.42 2.94
3250 3412 5.249852 TCAGCTTTTTACTAGGCCTTAGGAA 59.750 40.000 12.58 6.69 33.42 3.36
3251 3413 6.069615 TCAGCTTTTTACTAGGCCTTAGGAAT 60.070 38.462 12.58 0.00 32.19 3.01
3252 3414 6.038714 CAGCTTTTTACTAGGCCTTAGGAATG 59.961 42.308 12.58 4.03 32.19 2.67
3253 3415 5.886474 GCTTTTTACTAGGCCTTAGGAATGT 59.114 40.000 12.58 1.65 32.19 2.71
3254 3416 6.183360 GCTTTTTACTAGGCCTTAGGAATGTG 60.183 42.308 12.58 4.03 32.19 3.21
3255 3417 6.382919 TTTTACTAGGCCTTAGGAATGTGT 57.617 37.500 12.58 0.00 32.19 3.72
3256 3418 3.914426 ACTAGGCCTTAGGAATGTGTG 57.086 47.619 12.58 0.00 33.42 3.82
3257 3419 3.182152 ACTAGGCCTTAGGAATGTGTGT 58.818 45.455 12.58 0.00 33.42 3.72
3258 3420 4.359105 ACTAGGCCTTAGGAATGTGTGTA 58.641 43.478 12.58 0.00 33.42 2.90
3259 3421 4.969359 ACTAGGCCTTAGGAATGTGTGTAT 59.031 41.667 12.58 0.00 33.42 2.29
3260 3422 4.156455 AGGCCTTAGGAATGTGTGTATG 57.844 45.455 0.00 0.00 0.00 2.39
3261 3423 3.523564 AGGCCTTAGGAATGTGTGTATGT 59.476 43.478 0.00 0.00 0.00 2.29
3262 3424 4.719773 AGGCCTTAGGAATGTGTGTATGTA 59.280 41.667 0.00 0.00 0.00 2.29
3263 3425 5.369699 AGGCCTTAGGAATGTGTGTATGTAT 59.630 40.000 0.00 0.00 0.00 2.29
3264 3426 6.062095 GGCCTTAGGAATGTGTGTATGTATT 58.938 40.000 0.69 0.00 0.00 1.89
3265 3427 6.204882 GGCCTTAGGAATGTGTGTATGTATTC 59.795 42.308 0.69 0.00 0.00 1.75
3266 3428 6.765989 GCCTTAGGAATGTGTGTATGTATTCA 59.234 38.462 0.69 0.00 32.57 2.57
3267 3429 7.041780 GCCTTAGGAATGTGTGTATGTATTCAG 60.042 40.741 0.69 0.00 32.57 3.02
3268 3430 7.987458 CCTTAGGAATGTGTGTATGTATTCAGT 59.013 37.037 0.00 0.00 32.57 3.41
3272 3434 9.905713 AGGAATGTGTGTATGTATTCAGTATTT 57.094 29.630 0.00 0.00 32.57 1.40
3273 3435 9.935682 GGAATGTGTGTATGTATTCAGTATTTG 57.064 33.333 0.00 0.00 32.57 2.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 3.131577 CCTTATGCACAGGTACGGTTCTA 59.868 47.826 5.70 0.00 31.98 2.10
35 36 1.563924 TCCTTATGCACAGGTACGGT 58.436 50.000 12.56 0.00 37.10 4.83
69 74 6.761099 TGCTAGAGAGGTAAGTTGAGTAAG 57.239 41.667 0.00 0.00 0.00 2.34
70 75 6.321690 GGATGCTAGAGAGGTAAGTTGAGTAA 59.678 42.308 0.00 0.00 0.00 2.24
71 76 5.828859 GGATGCTAGAGAGGTAAGTTGAGTA 59.171 44.000 0.00 0.00 0.00 2.59
72 77 4.647399 GGATGCTAGAGAGGTAAGTTGAGT 59.353 45.833 0.00 0.00 0.00 3.41
78 83 3.572255 GGACAGGATGCTAGAGAGGTAAG 59.428 52.174 0.00 0.00 42.53 2.34
125 130 0.328592 ACTAGACGAGGACAGCTCCA 59.671 55.000 0.00 0.00 39.39 3.86
236 250 8.753133 CAGAGGGAGTATATGCTTGATATTGTA 58.247 37.037 0.00 0.00 0.00 2.41
247 261 2.609747 TGGGACAGAGGGAGTATATGC 58.390 52.381 0.00 0.00 0.00 3.14
259 273 9.200945 AAGAACGCTCTTGTATTATGGGACAGA 62.201 40.741 0.00 0.00 40.87 3.41
260 274 7.126233 AAGAACGCTCTTGTATTATGGGACAG 61.126 42.308 0.00 0.00 40.87 3.51
261 275 5.338056 AAGAACGCTCTTGTATTATGGGACA 60.338 40.000 0.00 0.00 41.52 4.02
262 276 4.694339 AGAACGCTCTTGTATTATGGGAC 58.306 43.478 0.00 0.00 0.00 4.46
263 277 5.353394 AAGAACGCTCTTGTATTATGGGA 57.647 39.130 0.00 0.00 40.54 4.37
273 287 9.790953 ACTAGTGTAGTGTCAAGAACGCTCTTG 62.791 44.444 20.12 20.12 45.69 3.02
274 288 3.068307 AGTGTAGTGTCAAGAACGCTCTT 59.932 43.478 0.00 0.00 45.69 2.85
275 289 2.623889 AGTGTAGTGTCAAGAACGCTCT 59.376 45.455 0.00 0.00 45.69 4.09
276 290 3.014604 AGTGTAGTGTCAAGAACGCTC 57.985 47.619 0.00 0.00 45.69 5.03
278 292 3.898529 ACTAGTGTAGTGTCAAGAACGC 58.101 45.455 0.00 0.00 37.69 4.84
289 303 4.690122 AGCGTTTTTGACACTAGTGTAGT 58.310 39.130 27.98 6.32 45.05 2.73
290 304 4.982916 AGAGCGTTTTTGACACTAGTGTAG 59.017 41.667 27.98 13.76 45.05 2.74
291 305 4.940463 AGAGCGTTTTTGACACTAGTGTA 58.060 39.130 27.98 11.50 45.05 2.90
293 307 4.795970 AAGAGCGTTTTTGACACTAGTG 57.204 40.909 21.44 21.44 0.00 2.74
294 308 8.773404 AATATAAGAGCGTTTTTGACACTAGT 57.227 30.769 0.00 0.00 0.00 2.57
297 311 8.612619 CCATAATATAAGAGCGTTTTTGACACT 58.387 33.333 0.00 0.00 0.00 3.55
298 312 7.855904 CCCATAATATAAGAGCGTTTTTGACAC 59.144 37.037 0.00 0.00 0.00 3.67
299 313 7.771361 TCCCATAATATAAGAGCGTTTTTGACA 59.229 33.333 0.00 0.00 0.00 3.58
300 314 8.068380 GTCCCATAATATAAGAGCGTTTTTGAC 58.932 37.037 0.00 0.00 0.00 3.18
301 315 7.042321 CGTCCCATAATATAAGAGCGTTTTTGA 60.042 37.037 0.00 0.00 0.00 2.69
302 316 7.042321 TCGTCCCATAATATAAGAGCGTTTTTG 60.042 37.037 0.00 0.00 0.00 2.44
303 317 6.987992 TCGTCCCATAATATAAGAGCGTTTTT 59.012 34.615 0.00 0.00 0.00 1.94
304 318 6.518493 TCGTCCCATAATATAAGAGCGTTTT 58.482 36.000 0.00 0.00 0.00 2.43
305 319 6.092955 TCGTCCCATAATATAAGAGCGTTT 57.907 37.500 0.00 0.00 0.00 3.60
306 320 5.717078 TCGTCCCATAATATAAGAGCGTT 57.283 39.130 0.00 0.00 0.00 4.84
307 321 5.336531 CCTTCGTCCCATAATATAAGAGCGT 60.337 44.000 0.00 0.00 0.00 5.07
308 322 5.103000 CCTTCGTCCCATAATATAAGAGCG 58.897 45.833 0.00 0.00 0.00 5.03
309 323 5.187186 TCCCTTCGTCCCATAATATAAGAGC 59.813 44.000 0.00 0.00 0.00 4.09
310 324 6.437793 ACTCCCTTCGTCCCATAATATAAGAG 59.562 42.308 0.00 0.00 0.00 2.85
311 325 6.320518 ACTCCCTTCGTCCCATAATATAAGA 58.679 40.000 0.00 0.00 0.00 2.10
312 326 6.607004 ACTCCCTTCGTCCCATAATATAAG 57.393 41.667 0.00 0.00 0.00 1.73
313 327 7.011994 TGTACTCCCTTCGTCCCATAATATAA 58.988 38.462 0.00 0.00 0.00 0.98
314 328 6.554784 TGTACTCCCTTCGTCCCATAATATA 58.445 40.000 0.00 0.00 0.00 0.86
315 329 5.399991 TGTACTCCCTTCGTCCCATAATAT 58.600 41.667 0.00 0.00 0.00 1.28
316 330 4.806892 TGTACTCCCTTCGTCCCATAATA 58.193 43.478 0.00 0.00 0.00 0.98
317 331 3.649843 TGTACTCCCTTCGTCCCATAAT 58.350 45.455 0.00 0.00 0.00 1.28
318 332 3.104519 TGTACTCCCTTCGTCCCATAA 57.895 47.619 0.00 0.00 0.00 1.90
319 333 2.832643 TGTACTCCCTTCGTCCCATA 57.167 50.000 0.00 0.00 0.00 2.74
320 334 1.946984 TTGTACTCCCTTCGTCCCAT 58.053 50.000 0.00 0.00 0.00 4.00
321 335 1.946984 ATTGTACTCCCTTCGTCCCA 58.053 50.000 0.00 0.00 0.00 4.37
322 336 5.796424 TTATATTGTACTCCCTTCGTCCC 57.204 43.478 0.00 0.00 0.00 4.46
323 337 8.672823 ATTTTTATATTGTACTCCCTTCGTCC 57.327 34.615 0.00 0.00 0.00 4.79
361 375 9.220767 GACCTTGTAAAAGTGAATAGATGAAGT 57.779 33.333 0.00 0.00 0.00 3.01
362 376 9.442047 AGACCTTGTAAAAGTGAATAGATGAAG 57.558 33.333 0.00 0.00 0.00 3.02
363 377 9.793259 AAGACCTTGTAAAAGTGAATAGATGAA 57.207 29.630 0.00 0.00 0.00 2.57
365 379 9.219603 TCAAGACCTTGTAAAAGTGAATAGATG 57.780 33.333 9.31 0.00 41.16 2.90
366 380 9.793259 TTCAAGACCTTGTAAAAGTGAATAGAT 57.207 29.630 9.31 0.00 41.16 1.98
367 381 9.621629 TTTCAAGACCTTGTAAAAGTGAATAGA 57.378 29.630 9.31 0.00 41.16 1.98
370 384 8.527810 TGTTTTCAAGACCTTGTAAAAGTGAAT 58.472 29.630 13.52 0.00 40.02 2.57
371 385 7.887381 TGTTTTCAAGACCTTGTAAAAGTGAA 58.113 30.769 13.52 0.00 40.02 3.18
372 386 7.455641 TGTTTTCAAGACCTTGTAAAAGTGA 57.544 32.000 13.52 0.00 40.02 3.41
373 387 8.702163 AATGTTTTCAAGACCTTGTAAAAGTG 57.298 30.769 13.52 0.00 40.02 3.16
374 388 9.366216 GAAATGTTTTCAAGACCTTGTAAAAGT 57.634 29.630 13.52 5.70 40.02 2.66
375 389 9.364989 TGAAATGTTTTCAAGACCTTGTAAAAG 57.635 29.630 13.52 0.00 40.02 2.27
376 390 9.364989 CTGAAATGTTTTCAAGACCTTGTAAAA 57.635 29.630 13.52 12.66 40.02 1.52
377 391 8.744652 TCTGAAATGTTTTCAAGACCTTGTAAA 58.255 29.630 9.31 9.40 41.16 2.01
378 392 8.188139 GTCTGAAATGTTTTCAAGACCTTGTAA 58.812 33.333 9.31 4.03 41.16 2.41
379 393 7.466725 CGTCTGAAATGTTTTCAAGACCTTGTA 60.467 37.037 17.23 0.00 41.16 2.41
380 394 6.564328 GTCTGAAATGTTTTCAAGACCTTGT 58.436 36.000 9.31 0.00 41.16 3.16
381 395 5.682862 CGTCTGAAATGTTTTCAAGACCTTG 59.317 40.000 17.23 3.47 41.71 3.61
382 396 5.221048 CCGTCTGAAATGTTTTCAAGACCTT 60.221 40.000 17.23 0.00 0.00 3.50
383 397 4.275936 CCGTCTGAAATGTTTTCAAGACCT 59.724 41.667 17.23 0.00 0.00 3.85
384 398 4.537015 CCGTCTGAAATGTTTTCAAGACC 58.463 43.478 17.23 8.08 0.00 3.85
385 399 3.975035 GCCGTCTGAAATGTTTTCAAGAC 59.025 43.478 15.17 15.17 0.00 3.01
386 400 3.629855 TGCCGTCTGAAATGTTTTCAAGA 59.370 39.130 4.43 2.42 0.00 3.02
387 401 3.963665 TGCCGTCTGAAATGTTTTCAAG 58.036 40.909 4.43 0.45 0.00 3.02
388 402 4.202101 ACATGCCGTCTGAAATGTTTTCAA 60.202 37.500 4.43 0.00 28.99 2.69
389 403 3.317711 ACATGCCGTCTGAAATGTTTTCA 59.682 39.130 0.00 2.96 28.99 2.69
390 404 3.900941 ACATGCCGTCTGAAATGTTTTC 58.099 40.909 0.00 0.00 28.99 2.29
391 405 5.446143 TTACATGCCGTCTGAAATGTTTT 57.554 34.783 0.00 0.00 35.07 2.43
392 406 5.446143 TTTACATGCCGTCTGAAATGTTT 57.554 34.783 0.00 0.00 35.07 2.83
393 407 4.615912 GCTTTACATGCCGTCTGAAATGTT 60.616 41.667 0.00 0.00 35.07 2.71
394 408 3.119849 GCTTTACATGCCGTCTGAAATGT 60.120 43.478 0.00 0.00 37.11 2.71
395 409 3.119884 TGCTTTACATGCCGTCTGAAATG 60.120 43.478 0.00 0.00 0.00 2.32
396 410 3.081061 TGCTTTACATGCCGTCTGAAAT 58.919 40.909 0.00 0.00 0.00 2.17
397 411 2.483877 CTGCTTTACATGCCGTCTGAAA 59.516 45.455 0.00 0.00 0.00 2.69
398 412 2.076100 CTGCTTTACATGCCGTCTGAA 58.924 47.619 0.00 0.00 0.00 3.02
399 413 1.725641 CTGCTTTACATGCCGTCTGA 58.274 50.000 0.00 0.00 0.00 3.27
400 414 0.097674 GCTGCTTTACATGCCGTCTG 59.902 55.000 0.00 0.00 0.00 3.51
401 415 1.026718 GGCTGCTTTACATGCCGTCT 61.027 55.000 0.00 0.00 34.37 4.18
402 416 1.026718 AGGCTGCTTTACATGCCGTC 61.027 55.000 0.00 0.00 43.39 4.79
403 417 0.251916 TAGGCTGCTTTACATGCCGT 59.748 50.000 0.00 0.00 43.39 5.68
404 418 1.597742 ATAGGCTGCTTTACATGCCG 58.402 50.000 0.00 0.00 43.39 5.69
405 419 4.142182 TGAAAATAGGCTGCTTTACATGCC 60.142 41.667 0.00 0.00 40.72 4.40
406 420 4.997565 TGAAAATAGGCTGCTTTACATGC 58.002 39.130 0.00 0.00 0.00 4.06
407 421 5.039333 GCTGAAAATAGGCTGCTTTACATG 58.961 41.667 0.00 0.00 0.00 3.21
408 422 4.952335 AGCTGAAAATAGGCTGCTTTACAT 59.048 37.500 0.00 0.00 36.12 2.29
409 423 4.156556 CAGCTGAAAATAGGCTGCTTTACA 59.843 41.667 8.42 0.00 45.04 2.41
410 424 4.666237 CAGCTGAAAATAGGCTGCTTTAC 58.334 43.478 8.42 0.00 45.04 2.01
411 425 4.970662 CAGCTGAAAATAGGCTGCTTTA 57.029 40.909 8.42 0.00 45.04 1.85
412 426 3.863142 CAGCTGAAAATAGGCTGCTTT 57.137 42.857 8.42 0.00 45.04 3.51
417 431 5.122396 CGTTTTAGACAGCTGAAAATAGGCT 59.878 40.000 23.35 0.00 32.30 4.58
418 432 5.121768 TCGTTTTAGACAGCTGAAAATAGGC 59.878 40.000 23.35 4.34 32.30 3.93
419 433 6.369065 AGTCGTTTTAGACAGCTGAAAATAGG 59.631 38.462 23.35 11.34 43.24 2.57
420 434 7.352719 AGTCGTTTTAGACAGCTGAAAATAG 57.647 36.000 23.35 14.02 43.24 1.73
421 435 7.724305 AAGTCGTTTTAGACAGCTGAAAATA 57.276 32.000 23.35 6.83 43.24 1.40
422 436 6.619801 AAGTCGTTTTAGACAGCTGAAAAT 57.380 33.333 23.35 5.34 43.24 1.82
423 437 7.724305 ATAAGTCGTTTTAGACAGCTGAAAA 57.276 32.000 23.35 13.98 43.24 2.29
424 438 8.821147 TTATAAGTCGTTTTAGACAGCTGAAA 57.179 30.769 23.35 7.93 43.24 2.69
425 439 8.821147 TTTATAAGTCGTTTTAGACAGCTGAA 57.179 30.769 23.35 0.48 43.24 3.02
426 440 8.086522 ACTTTATAAGTCGTTTTAGACAGCTGA 58.913 33.333 23.35 0.00 43.24 4.26
427 441 8.162880 CACTTTATAAGTCGTTTTAGACAGCTG 58.837 37.037 13.48 13.48 43.24 4.24
428 442 8.086522 TCACTTTATAAGTCGTTTTAGACAGCT 58.913 33.333 0.00 0.00 43.24 4.24
429 443 8.236084 TCACTTTATAAGTCGTTTTAGACAGC 57.764 34.615 0.00 0.00 43.24 4.40
431 445 8.693504 CGTTCACTTTATAAGTCGTTTTAGACA 58.306 33.333 0.00 0.00 43.24 3.41
432 446 8.158445 CCGTTCACTTTATAAGTCGTTTTAGAC 58.842 37.037 0.00 0.00 40.46 2.59
433 447 8.081633 TCCGTTCACTTTATAAGTCGTTTTAGA 58.918 33.333 0.00 0.00 40.46 2.10
434 448 8.231304 TCCGTTCACTTTATAAGTCGTTTTAG 57.769 34.615 0.00 0.00 40.46 1.85
435 449 7.329226 CCTCCGTTCACTTTATAAGTCGTTTTA 59.671 37.037 0.00 0.00 40.46 1.52
436 450 6.146673 CCTCCGTTCACTTTATAAGTCGTTTT 59.853 38.462 0.00 0.00 40.46 2.43
437 451 5.636543 CCTCCGTTCACTTTATAAGTCGTTT 59.363 40.000 0.00 0.00 40.46 3.60
438 452 5.166398 CCTCCGTTCACTTTATAAGTCGTT 58.834 41.667 0.00 0.00 40.46 3.85
439 453 4.381292 CCCTCCGTTCACTTTATAAGTCGT 60.381 45.833 0.00 0.00 40.46 4.34
440 454 4.110482 CCCTCCGTTCACTTTATAAGTCG 58.890 47.826 0.00 0.00 40.46 4.18
441 455 5.105432 ACTCCCTCCGTTCACTTTATAAGTC 60.105 44.000 0.00 0.00 40.46 3.01
442 456 4.776308 ACTCCCTCCGTTCACTTTATAAGT 59.224 41.667 0.00 0.00 44.06 2.24
443 457 5.340439 ACTCCCTCCGTTCACTTTATAAG 57.660 43.478 0.00 0.00 0.00 1.73
444 458 6.189859 TCTACTCCCTCCGTTCACTTTATAA 58.810 40.000 0.00 0.00 0.00 0.98
445 459 5.759059 TCTACTCCCTCCGTTCACTTTATA 58.241 41.667 0.00 0.00 0.00 0.98
446 460 4.607239 TCTACTCCCTCCGTTCACTTTAT 58.393 43.478 0.00 0.00 0.00 1.40
447 461 4.038271 TCTACTCCCTCCGTTCACTTTA 57.962 45.455 0.00 0.00 0.00 1.85
448 462 2.885616 TCTACTCCCTCCGTTCACTTT 58.114 47.619 0.00 0.00 0.00 2.66
449 463 2.599408 TCTACTCCCTCCGTTCACTT 57.401 50.000 0.00 0.00 0.00 3.16
450 464 2.025226 TCATCTACTCCCTCCGTTCACT 60.025 50.000 0.00 0.00 0.00 3.41
451 465 2.376109 TCATCTACTCCCTCCGTTCAC 58.624 52.381 0.00 0.00 0.00 3.18
452 466 2.820728 TCATCTACTCCCTCCGTTCA 57.179 50.000 0.00 0.00 0.00 3.18
453 467 8.788806 CATATATATCATCTACTCCCTCCGTTC 58.211 40.741 0.00 0.00 0.00 3.95
454 468 8.503573 TCATATATATCATCTACTCCCTCCGTT 58.496 37.037 0.00 0.00 0.00 4.44
455 469 8.046867 TCATATATATCATCTACTCCCTCCGT 57.953 38.462 0.00 0.00 0.00 4.69
456 470 9.527157 AATCATATATATCATCTACTCCCTCCG 57.473 37.037 0.00 0.00 0.00 4.63
459 473 9.099071 GCCAATCATATATATCATCTACTCCCT 57.901 37.037 0.00 0.00 0.00 4.20
460 474 8.874156 TGCCAATCATATATATCATCTACTCCC 58.126 37.037 0.00 0.00 0.00 4.30
519 535 6.945938 TTCTCAAAAATCAAACCTTACGGA 57.054 33.333 0.00 0.00 0.00 4.69
566 582 5.179182 GCTCGTGTAGTACTCCCTCTATTAC 59.821 48.000 0.00 0.00 0.00 1.89
567 583 5.071519 AGCTCGTGTAGTACTCCCTCTATTA 59.928 44.000 0.00 0.00 0.00 0.98
640 656 0.976641 TGCTCGTGGATGTTTCTCCT 59.023 50.000 0.00 0.00 36.20 3.69
690 710 3.380320 GCTAGTCCTCCTTCTCAACTCTC 59.620 52.174 0.00 0.00 0.00 3.20
749 772 8.740123 TCAATCTTGGTTTTTGTAGTTGTCTA 57.260 30.769 0.00 0.00 0.00 2.59
785 829 2.696989 TAGATCACTACGTCCGTCCA 57.303 50.000 0.00 0.00 0.00 4.02
817 861 8.373048 TCATTACTGCTCTTTTCGTAAAGAAA 57.627 30.769 16.58 9.17 46.72 2.52
849 893 3.853330 CGCGCGCAGTAAGCATGT 61.853 61.111 32.61 0.00 46.13 3.21
927 982 5.290885 AGAAACGTTTTCTGGAATGCAAAAC 59.709 36.000 15.89 0.00 36.88 2.43
928 983 5.290643 CAGAAACGTTTTCTGGAATGCAAAA 59.709 36.000 15.89 0.00 41.54 2.44
945 1000 1.068474 CAACGACTAGGCCAGAAACG 58.932 55.000 5.01 6.67 0.00 3.60
960 1015 3.207877 GTTTCCGCAAACGCAACG 58.792 55.556 0.00 0.00 38.22 4.10
975 1030 1.548719 TCAGCTGTGGTATGCTACGTT 59.451 47.619 14.67 0.00 37.81 3.99
1242 1319 3.174265 GAGGCTCCTGGGATGGGG 61.174 72.222 2.15 0.00 0.00 4.96
1451 1528 4.083862 GGAGGCGGCCGAAGAAGT 62.084 66.667 33.48 5.01 0.00 3.01
1652 1729 4.039245 TCAGGTAGTTTGTGGAGAAGTCAG 59.961 45.833 0.00 0.00 0.00 3.51
1683 1760 2.032681 GCAAGGCTGTTCGGGAGT 59.967 61.111 0.00 0.00 0.00 3.85
2016 2141 4.274978 TGTTGTCTCCGGATATGACAGTA 58.725 43.478 20.43 13.11 41.01 2.74
2046 2171 0.322008 GGGTGTTGAAGCTCCCAGAG 60.322 60.000 1.03 0.00 40.79 3.35
2115 2240 3.541632 AGTTACAATATGGTTGCTCCCG 58.458 45.455 0.00 0.00 34.77 5.14
2334 2464 0.814457 GAGTCTCTGATGTGCTCCGT 59.186 55.000 0.00 0.00 0.00 4.69
2354 2486 8.370940 TCTGAGTGATTAACTTCTTCTGTTCAT 58.629 33.333 0.00 0.00 40.07 2.57
2370 2510 4.086706 AGGTTTTCGGTTCTGAGTGATT 57.913 40.909 0.00 0.00 0.00 2.57
2371 2511 3.771577 AGGTTTTCGGTTCTGAGTGAT 57.228 42.857 0.00 0.00 0.00 3.06
2430 2577 8.823220 AATATACAAAAGGTCTTTATGGTGCT 57.177 30.769 0.00 0.00 31.63 4.40
2466 2618 9.855021 ATATAGTTGCGGAAATTTAAATATGCC 57.145 29.630 0.01 2.87 0.00 4.40
2502 2654 6.238925 CCTTTTAGAAATTTCCACACGGACTT 60.239 38.462 14.61 0.00 42.67 3.01
2762 2919 4.622701 ATCGGCAAAGAATAAGCTGTTC 57.377 40.909 4.38 4.38 36.11 3.18
2961 3122 2.796651 CTCGGCTGCTGCAATTCC 59.203 61.111 17.89 4.54 41.91 3.01
2963 3124 2.360852 AGCTCGGCTGCTGCAATT 60.361 55.556 17.89 0.00 42.33 2.32
3049 3211 6.238925 CGGAATGTGTATATATATCCCTGCGA 60.239 42.308 0.00 0.00 0.00 5.10
3060 3222 6.350361 CCACGGGTATTCGGAATGTGTATATA 60.350 42.308 13.37 0.00 0.00 0.86
3081 3243 0.940519 TTCTACCGAAACACGCCACG 60.941 55.000 0.00 0.00 41.07 4.94
3082 3244 1.219646 TTTCTACCGAAACACGCCAC 58.780 50.000 0.00 0.00 41.07 5.01
3083 3245 2.070783 GATTTCTACCGAAACACGCCA 58.929 47.619 0.00 0.00 41.58 5.69
3084 3246 2.344025 AGATTTCTACCGAAACACGCC 58.656 47.619 0.00 0.00 41.58 5.68
3085 3247 2.347755 GGAGATTTCTACCGAAACACGC 59.652 50.000 0.00 0.00 41.58 5.34
3086 3248 3.846360 AGGAGATTTCTACCGAAACACG 58.154 45.455 0.00 0.00 41.58 4.49
3087 3249 6.017357 ACAAAAGGAGATTTCTACCGAAACAC 60.017 38.462 0.00 0.00 41.58 3.32
3088 3250 6.059484 ACAAAAGGAGATTTCTACCGAAACA 58.941 36.000 0.00 0.00 41.58 2.83
3089 3251 6.555812 ACAAAAGGAGATTTCTACCGAAAC 57.444 37.500 0.00 0.00 41.58 2.78
3090 3252 7.576861 AAACAAAAGGAGATTTCTACCGAAA 57.423 32.000 0.00 0.00 42.83 3.46
3091 3253 7.422399 CAAAACAAAAGGAGATTTCTACCGAA 58.578 34.615 0.00 0.00 0.00 4.30
3092 3254 6.016610 CCAAAACAAAAGGAGATTTCTACCGA 60.017 38.462 0.00 0.00 0.00 4.69
3093 3255 6.149633 CCAAAACAAAAGGAGATTTCTACCG 58.850 40.000 0.00 0.00 0.00 4.02
3094 3256 6.455647 CCCAAAACAAAAGGAGATTTCTACC 58.544 40.000 0.00 0.00 0.00 3.18
3095 3257 5.926542 GCCCAAAACAAAAGGAGATTTCTAC 59.073 40.000 0.00 0.00 0.00 2.59
3096 3258 5.838521 AGCCCAAAACAAAAGGAGATTTCTA 59.161 36.000 0.00 0.00 0.00 2.10
3097 3259 4.655649 AGCCCAAAACAAAAGGAGATTTCT 59.344 37.500 0.00 0.00 0.00 2.52
3098 3260 4.960938 AGCCCAAAACAAAAGGAGATTTC 58.039 39.130 0.00 0.00 0.00 2.17
3099 3261 6.686484 ATAGCCCAAAACAAAAGGAGATTT 57.314 33.333 0.00 0.00 0.00 2.17
3100 3262 7.182060 TCTATAGCCCAAAACAAAAGGAGATT 58.818 34.615 0.00 0.00 0.00 2.40
3101 3263 6.731467 TCTATAGCCCAAAACAAAAGGAGAT 58.269 36.000 0.00 0.00 0.00 2.75
3102 3264 6.134535 TCTATAGCCCAAAACAAAAGGAGA 57.865 37.500 0.00 0.00 0.00 3.71
3103 3265 6.834168 TTCTATAGCCCAAAACAAAAGGAG 57.166 37.500 0.00 0.00 0.00 3.69
3104 3266 7.604657 TTTTCTATAGCCCAAAACAAAAGGA 57.395 32.000 0.00 0.00 0.00 3.36
3137 3299 9.268282 ACCTTTTCTCCTATATAGTGTCAGAAA 57.732 33.333 8.92 12.05 0.00 2.52
3138 3300 8.696374 CACCTTTTCTCCTATATAGTGTCAGAA 58.304 37.037 8.92 7.53 0.00 3.02
3139 3301 7.839705 ACACCTTTTCTCCTATATAGTGTCAGA 59.160 37.037 8.92 2.27 30.54 3.27
3140 3302 7.923344 CACACCTTTTCTCCTATATAGTGTCAG 59.077 40.741 8.92 0.09 33.92 3.51
3141 3303 7.632898 GCACACCTTTTCTCCTATATAGTGTCA 60.633 40.741 8.92 0.00 33.92 3.58
3142 3304 6.702282 GCACACCTTTTCTCCTATATAGTGTC 59.298 42.308 8.92 0.00 33.92 3.67
3143 3305 6.408206 GGCACACCTTTTCTCCTATATAGTGT 60.408 42.308 8.92 1.56 36.43 3.55
3144 3306 5.992217 GGCACACCTTTTCTCCTATATAGTG 59.008 44.000 8.92 1.93 0.00 2.74
3145 3307 5.665812 TGGCACACCTTTTCTCCTATATAGT 59.334 40.000 8.92 0.00 36.63 2.12
3146 3308 6.174720 TGGCACACCTTTTCTCCTATATAG 57.825 41.667 2.46 2.46 36.63 1.31
3154 3316 8.343546 TGACAGAAAATGGCACACCTTTTCTC 62.344 42.308 18.74 12.17 44.15 2.87
3155 3317 6.620139 TGACAGAAAATGGCACACCTTTTCT 61.620 40.000 16.78 16.78 44.15 2.52
3156 3318 4.441356 TGACAGAAAATGGCACACCTTTTC 60.441 41.667 13.52 13.52 44.15 2.29
3157 3319 3.450457 TGACAGAAAATGGCACACCTTTT 59.550 39.130 0.00 0.00 44.15 2.27
3158 3320 3.030291 TGACAGAAAATGGCACACCTTT 58.970 40.909 0.00 0.00 44.15 3.11
3159 3321 2.624838 CTGACAGAAAATGGCACACCTT 59.375 45.455 0.00 0.00 44.15 3.50
3160 3322 2.158623 TCTGACAGAAAATGGCACACCT 60.159 45.455 1.64 0.00 44.15 4.00
3161 3323 2.229792 TCTGACAGAAAATGGCACACC 58.770 47.619 1.64 0.00 44.15 4.16
3162 3324 3.988379 TTCTGACAGAAAATGGCACAC 57.012 42.857 15.58 0.00 44.15 3.82
3163 3325 5.534207 AATTTCTGACAGAAAATGGCACA 57.466 34.783 29.26 9.21 44.15 4.57
3164 3326 8.031277 AGATAAATTTCTGACAGAAAATGGCAC 58.969 33.333 29.26 19.37 44.15 5.01
3166 3328 8.992835 AAGATAAATTTCTGACAGAAAATGGC 57.007 30.769 29.26 18.70 46.08 4.40
3216 3378 9.908152 GCCTAGTAAAAAGCTGAAAAAGAAATA 57.092 29.630 0.00 0.00 0.00 1.40
3217 3379 7.872993 GGCCTAGTAAAAAGCTGAAAAAGAAAT 59.127 33.333 0.00 0.00 0.00 2.17
3218 3380 7.069455 AGGCCTAGTAAAAAGCTGAAAAAGAAA 59.931 33.333 1.29 0.00 0.00 2.52
3219 3381 6.549736 AGGCCTAGTAAAAAGCTGAAAAAGAA 59.450 34.615 1.29 0.00 0.00 2.52
3220 3382 6.068670 AGGCCTAGTAAAAAGCTGAAAAAGA 58.931 36.000 1.29 0.00 0.00 2.52
3221 3383 6.332735 AGGCCTAGTAAAAAGCTGAAAAAG 57.667 37.500 1.29 0.00 0.00 2.27
3222 3384 6.724893 AAGGCCTAGTAAAAAGCTGAAAAA 57.275 33.333 5.16 0.00 0.00 1.94
3223 3385 6.433093 CCTAAGGCCTAGTAAAAAGCTGAAAA 59.567 38.462 5.16 0.00 0.00 2.29
3224 3386 5.944007 CCTAAGGCCTAGTAAAAAGCTGAAA 59.056 40.000 5.16 0.00 0.00 2.69
3225 3387 5.249852 TCCTAAGGCCTAGTAAAAAGCTGAA 59.750 40.000 5.16 0.00 0.00 3.02
3226 3388 4.781087 TCCTAAGGCCTAGTAAAAAGCTGA 59.219 41.667 5.16 0.00 0.00 4.26
3227 3389 5.099042 TCCTAAGGCCTAGTAAAAAGCTG 57.901 43.478 5.16 0.00 0.00 4.24
3228 3390 5.774102 TTCCTAAGGCCTAGTAAAAAGCT 57.226 39.130 5.16 0.00 0.00 3.74
3229 3391 5.886474 ACATTCCTAAGGCCTAGTAAAAAGC 59.114 40.000 5.16 0.00 0.00 3.51
3230 3392 6.884836 ACACATTCCTAAGGCCTAGTAAAAAG 59.115 38.462 5.16 0.00 0.00 2.27
3231 3393 6.657541 CACACATTCCTAAGGCCTAGTAAAAA 59.342 38.462 5.16 0.00 0.00 1.94
3232 3394 6.177610 CACACATTCCTAAGGCCTAGTAAAA 58.822 40.000 5.16 0.00 0.00 1.52
3233 3395 5.249852 ACACACATTCCTAAGGCCTAGTAAA 59.750 40.000 5.16 0.00 0.00 2.01
3234 3396 4.781087 ACACACATTCCTAAGGCCTAGTAA 59.219 41.667 5.16 0.00 0.00 2.24
3235 3397 4.359105 ACACACATTCCTAAGGCCTAGTA 58.641 43.478 5.16 0.00 0.00 1.82
3236 3398 3.182152 ACACACATTCCTAAGGCCTAGT 58.818 45.455 5.16 0.00 0.00 2.57
3237 3399 3.914426 ACACACATTCCTAAGGCCTAG 57.086 47.619 5.16 3.78 0.00 3.02
3238 3400 4.719773 ACATACACACATTCCTAAGGCCTA 59.280 41.667 5.16 0.00 0.00 3.93
3239 3401 3.523564 ACATACACACATTCCTAAGGCCT 59.476 43.478 0.00 0.00 0.00 5.19
3240 3402 3.886123 ACATACACACATTCCTAAGGCC 58.114 45.455 0.00 0.00 0.00 5.19
3241 3403 6.765989 TGAATACATACACACATTCCTAAGGC 59.234 38.462 0.00 0.00 0.00 4.35
3242 3404 7.987458 ACTGAATACATACACACATTCCTAAGG 59.013 37.037 0.00 0.00 0.00 2.69
3243 3405 8.948631 ACTGAATACATACACACATTCCTAAG 57.051 34.615 0.00 0.00 0.00 2.18
3246 3408 9.905713 AAATACTGAATACATACACACATTCCT 57.094 29.630 0.00 0.00 0.00 3.36
3247 3409 9.935682 CAAATACTGAATACATACACACATTCC 57.064 33.333 0.00 0.00 0.00 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.