Multiple sequence alignment - TraesCS5B01G525500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G525500 chr5B 100.000 2964 0 0 952 3915 685428908 685431871 0.000000e+00 5474
1 TraesCS5B01G525500 chr5B 100.000 707 0 0 1 707 685427957 685428663 0.000000e+00 1306
2 TraesCS5B01G525500 chr5D 88.894 2044 165 34 1400 3417 543603773 543601766 0.000000e+00 2460
3 TraesCS5B01G525500 chr5D 90.669 493 42 1 20 512 543605665 543605177 0.000000e+00 652
4 TraesCS5B01G525500 chr5D 91.632 478 20 11 3451 3915 543601640 543601170 0.000000e+00 643
5 TraesCS5B01G525500 chr5D 91.706 422 25 10 982 1399 543604217 543603802 9.430000e-161 577
6 TraesCS5B01G525500 chr4A 91.066 1388 64 21 2553 3915 625529394 625530746 0.000000e+00 1821
7 TraesCS5B01G525500 chr4A 85.380 1669 126 45 952 2555 625527541 625529156 0.000000e+00 1622
8 TraesCS5B01G525500 chr4A 78.710 1085 108 61 975 2000 421026969 421027989 9.300000e-171 610
9 TraesCS5B01G525500 chr4A 91.429 140 9 1 217 356 625525439 625525575 5.160000e-44 189
10 TraesCS5B01G525500 chr4D 85.266 1690 133 57 975 2616 486499778 486498157 0.000000e+00 1635
11 TraesCS5B01G525500 chr4D 98.667 75 1 0 2682 2756 486498158 486498084 2.450000e-27 134
12 TraesCS5B01G525500 chr7A 94.454 577 28 2 2136 2710 511535438 511534864 0.000000e+00 885
13 TraesCS5B01G525500 chr7A 92.417 633 28 3 2136 2750 693949356 693948726 0.000000e+00 885
14 TraesCS5B01G525500 chr7A 90.449 356 24 7 1046 1393 693950190 693949837 9.910000e-126 460
15 TraesCS5B01G525500 chr7A 81.905 420 69 6 1764 2182 693947843 693947430 8.050000e-92 348
16 TraesCS5B01G525500 chr1A 92.259 633 29 3 2136 2750 175511455 175512085 0.000000e+00 880
17 TraesCS5B01G525500 chr1A 92.101 633 30 3 2136 2750 554115618 554116248 0.000000e+00 874
18 TraesCS5B01G525500 chr1A 82.033 423 69 6 1761 2182 175512980 175513396 1.730000e-93 353
19 TraesCS5B01G525500 chr1A 81.991 422 69 6 1761 2181 554117129 554117544 6.220000e-93 351
20 TraesCS5B01G525500 chr5A 94.107 577 30 2 2136 2710 558855367 558855941 0.000000e+00 874
21 TraesCS5B01G525500 chr5A 90.730 356 24 6 1046 1393 8131807 8131453 2.130000e-127 466
22 TraesCS5B01G525500 chr5A 81.797 423 70 6 1761 2182 558856861 558857277 8.050000e-92 348
23 TraesCS5B01G525500 chr2A 93.825 583 31 4 2176 2756 399425917 399425338 0.000000e+00 872
24 TraesCS5B01G525500 chr2A 93.654 583 33 2 2176 2756 397872332 397872912 0.000000e+00 869
25 TraesCS5B01G525500 chr2B 94.670 394 17 4 952 1343 581614049 581613658 3.340000e-170 608
26 TraesCS5B01G525500 chr1B 93.401 394 23 3 952 1343 77962484 77962092 7.290000e-162 580
27 TraesCS5B01G525500 chr1B 96.522 345 11 1 999 1343 24005579 24005236 1.580000e-158 569
28 TraesCS5B01G525500 chr6B 93.639 393 14 6 952 1343 81721831 81722213 9.430000e-161 577
29 TraesCS5B01G525500 chr3B 95.732 328 14 0 1016 1343 830289313 830288986 2.680000e-146 529
30 TraesCS5B01G525500 chr7D 87.832 452 31 18 957 1393 31187910 31187468 3.490000e-140 508
31 TraesCS5B01G525500 chr7D 88.796 357 28 6 1875 2227 31186966 31186618 1.010000e-115 427
32 TraesCS5B01G525500 chr1D 82.270 423 69 5 1761 2182 299569498 299569915 1.030000e-95 361


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G525500 chr5B 685427957 685431871 3914 False 3390.000000 5474 100.000000 1 3915 2 chr5B.!!$F1 3914
1 TraesCS5B01G525500 chr5D 543601170 543605665 4495 True 1083.000000 2460 90.725250 20 3915 4 chr5D.!!$R1 3895
2 TraesCS5B01G525500 chr4A 625525439 625530746 5307 False 1210.666667 1821 89.291667 217 3915 3 chr4A.!!$F2 3698
3 TraesCS5B01G525500 chr4A 421026969 421027989 1020 False 610.000000 610 78.710000 975 2000 1 chr4A.!!$F1 1025
4 TraesCS5B01G525500 chr4D 486498084 486499778 1694 True 884.500000 1635 91.966500 975 2756 2 chr4D.!!$R1 1781
5 TraesCS5B01G525500 chr7A 511534864 511535438 574 True 885.000000 885 94.454000 2136 2710 1 chr7A.!!$R1 574
6 TraesCS5B01G525500 chr7A 693947430 693950190 2760 True 564.333333 885 88.257000 1046 2750 3 chr7A.!!$R2 1704
7 TraesCS5B01G525500 chr1A 175511455 175513396 1941 False 616.500000 880 87.146000 1761 2750 2 chr1A.!!$F1 989
8 TraesCS5B01G525500 chr1A 554115618 554117544 1926 False 612.500000 874 87.046000 1761 2750 2 chr1A.!!$F2 989
9 TraesCS5B01G525500 chr5A 558855367 558857277 1910 False 611.000000 874 87.952000 1761 2710 2 chr5A.!!$F1 949
10 TraesCS5B01G525500 chr2A 399425338 399425917 579 True 872.000000 872 93.825000 2176 2756 1 chr2A.!!$R1 580
11 TraesCS5B01G525500 chr2A 397872332 397872912 580 False 869.000000 869 93.654000 2176 2756 1 chr2A.!!$F1 580
12 TraesCS5B01G525500 chr7D 31186618 31187910 1292 True 467.500000 508 88.314000 957 2227 2 chr7D.!!$R1 1270

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
134 135 0.179097 GAGACTGGATCCGCTTCCAC 60.179 60.0 7.39 0.0 40.9 4.02 F
1432 3648 0.096454 GCGGCGTAGATTGGTTGTTC 59.904 55.0 9.37 0.0 0.0 3.18 F
1458 3674 0.724549 CGATCCGAACGCCAAATTCA 59.275 50.0 0.00 0.0 0.0 2.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1949 4272 0.105039 GAATCAGTAGGTCCCGCCAG 59.895 60.000 0.00 0.00 40.61 4.85 R
2758 5358 1.224069 GAGCAGCAACAGTCGAAGCA 61.224 55.000 0.00 0.00 0.00 3.91 R
3223 6958 1.542915 CAACCAGACTGCATTTGGAGG 59.457 52.381 15.71 3.91 37.85 4.30 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 4.605640 TTTACTACACCGCAGTAAGGTT 57.394 40.909 0.00 0.00 40.59 3.50
35 36 6.036191 CCGCAGTAAGGTTCTAAAGAATTCTC 59.964 42.308 8.78 0.00 36.33 2.87
43 44 6.215636 AGGTTCTAAAGAATTCTCTGGGCTTA 59.784 38.462 8.78 1.86 36.33 3.09
60 61 4.770531 GGGCTTATTTGTAGTCCACCTTTT 59.229 41.667 0.00 0.00 37.35 2.27
61 62 5.245301 GGGCTTATTTGTAGTCCACCTTTTT 59.755 40.000 0.00 0.00 37.35 1.94
67 68 0.250989 TAGTCCACCTTTTTGGGGCG 60.251 55.000 0.00 0.00 38.11 6.13
79 80 0.548989 TTGGGGCGTACCATTGCTAT 59.451 50.000 1.05 0.00 40.91 2.97
131 132 0.820871 ACAGAGACTGGATCCGCTTC 59.179 55.000 7.39 3.05 35.51 3.86
134 135 0.179097 GAGACTGGATCCGCTTCCAC 60.179 60.000 7.39 0.00 40.90 4.02
141 142 1.281899 GATCCGCTTCCACGAAAGAG 58.718 55.000 0.00 0.00 34.06 2.85
146 147 1.668919 CGCTTCCACGAAAGAGTAGCA 60.669 52.381 0.00 0.00 33.55 3.49
147 148 2.622436 GCTTCCACGAAAGAGTAGCAT 58.378 47.619 0.00 0.00 33.90 3.79
169 170 3.738982 ACTTTTGCTTGCCCCATTTAAC 58.261 40.909 0.00 0.00 0.00 2.01
172 173 1.254284 TGCTTGCCCCATTTAACGGG 61.254 55.000 2.52 2.52 44.07 5.28
213 214 3.611057 GCAGAGATTCTTGTGGCACAAAG 60.611 47.826 30.66 23.54 44.16 2.77
231 232 2.698855 AGGGATATACATGCATCCGC 57.301 50.000 0.00 8.01 41.49 5.54
248 249 0.532640 CGCCATGCCATGCTAGTACA 60.533 55.000 0.00 0.00 0.00 2.90
281 282 3.647636 AGCAGCAGGGACTATCTTCTAA 58.352 45.455 0.00 0.00 36.02 2.10
326 327 1.574925 CACACAGAGCTTGCAGCAG 59.425 57.895 10.16 0.00 45.56 4.24
341 342 1.131126 CAGCAGGAAAGGTACAATGCG 59.869 52.381 0.00 0.00 38.65 4.73
349 350 1.974343 GGTACAATGCGTGGGCCAA 60.974 57.895 8.40 0.00 38.85 4.52
379 380 2.265904 CGACCGGACAGACACCAGA 61.266 63.158 9.46 0.00 0.00 3.86
408 409 1.001746 TGCTTGGAGAGAGCAGAACAG 59.998 52.381 0.00 0.00 44.63 3.16
417 418 3.580458 AGAGAGCAGAACAGGTTACACAT 59.420 43.478 0.00 0.00 0.00 3.21
434 435 3.009363 ACACATCCATCACAATCACAGGA 59.991 43.478 0.00 0.00 0.00 3.86
435 436 4.204799 CACATCCATCACAATCACAGGAT 58.795 43.478 0.00 0.00 36.35 3.24
436 437 5.104402 ACACATCCATCACAATCACAGGATA 60.104 40.000 0.00 0.00 34.30 2.59
437 438 6.002082 CACATCCATCACAATCACAGGATAT 58.998 40.000 0.00 0.00 34.30 1.63
454 455 4.047265 AGGATATATAGGGGCCAGAGACAA 59.953 45.833 4.39 0.00 0.00 3.18
473 474 2.938451 CAAAGAGATACGCCATGCTTGA 59.062 45.455 0.22 0.00 0.00 3.02
492 493 2.094026 TGATCATGTCCAGAGTCCAACG 60.094 50.000 0.00 0.00 0.00 4.10
497 498 2.266055 CCAGAGTCCAACGGCCTC 59.734 66.667 0.00 0.00 0.00 4.70
512 513 4.179599 CTCCCCTCCCTCCCTCCC 62.180 77.778 0.00 0.00 0.00 4.30
513 514 4.761304 TCCCCTCCCTCCCTCCCT 62.761 72.222 0.00 0.00 0.00 4.20
514 515 4.179599 CCCCTCCCTCCCTCCCTC 62.180 77.778 0.00 0.00 0.00 4.30
515 516 4.179599 CCCTCCCTCCCTCCCTCC 62.180 77.778 0.00 0.00 0.00 4.30
516 517 4.179599 CCTCCCTCCCTCCCTCCC 62.180 77.778 0.00 0.00 0.00 4.30
517 518 3.039526 CTCCCTCCCTCCCTCCCT 61.040 72.222 0.00 0.00 0.00 4.20
519 520 4.179599 CCCTCCCTCCCTCCCTCC 62.180 77.778 0.00 0.00 0.00 4.30
520 521 3.368501 CCTCCCTCCCTCCCTCCA 61.369 72.222 0.00 0.00 0.00 3.86
521 522 2.731461 CCTCCCTCCCTCCCTCCAT 61.731 68.421 0.00 0.00 0.00 3.41
522 523 1.461075 CTCCCTCCCTCCCTCCATG 60.461 68.421 0.00 0.00 0.00 3.66
523 524 3.174265 CCCTCCCTCCCTCCATGC 61.174 72.222 0.00 0.00 0.00 4.06
524 525 3.174265 CCTCCCTCCCTCCATGCC 61.174 72.222 0.00 0.00 0.00 4.40
525 526 3.554342 CTCCCTCCCTCCATGCCG 61.554 72.222 0.00 0.00 0.00 5.69
537 743 0.884259 CCATGCCGTATTCATGCCGA 60.884 55.000 0.00 0.00 39.83 5.54
582 790 9.991906 TTTCTTACAGGGATAGAAATTATACCG 57.008 33.333 0.00 0.00 34.07 4.02
584 792 7.731688 TCTTACAGGGATAGAAATTATACCGGT 59.268 37.037 13.98 13.98 39.24 5.28
588 796 4.390909 GGGATAGAAATTATACCGGTTGCG 59.609 45.833 15.04 0.00 0.00 4.85
599 807 0.591170 CCGGTTGCGAACATGAAACT 59.409 50.000 0.00 0.00 0.00 2.66
603 811 2.228822 GGTTGCGAACATGAAACTGGAT 59.771 45.455 0.00 0.00 0.00 3.41
604 812 3.305335 GGTTGCGAACATGAAACTGGATT 60.305 43.478 0.00 0.00 0.00 3.01
605 813 4.298332 GTTGCGAACATGAAACTGGATTT 58.702 39.130 0.00 0.00 0.00 2.17
606 814 4.582701 TGCGAACATGAAACTGGATTTT 57.417 36.364 0.00 0.00 0.00 1.82
607 815 4.942852 TGCGAACATGAAACTGGATTTTT 58.057 34.783 0.00 0.00 0.00 1.94
647 905 7.224557 TGAAATTTTGCTCTTTGAAAAGGCTAC 59.775 33.333 13.66 0.00 36.67 3.58
648 906 5.590530 TTTTGCTCTTTGAAAAGGCTACA 57.409 34.783 13.66 0.00 36.67 2.74
670 928 2.432972 CCACCGGCTGCAAAATGC 60.433 61.111 0.00 0.00 45.29 3.56
973 2816 0.249676 GAAACCCTCGTCCCTTCCTC 59.750 60.000 0.00 0.00 0.00 3.71
974 2817 1.199425 AAACCCTCGTCCCTTCCTCC 61.199 60.000 0.00 0.00 0.00 4.30
1226 3372 1.033574 ATCCTCTTCCGTAAGCTCCG 58.966 55.000 0.00 0.00 32.36 4.63
1233 3407 2.202756 CGTAAGCTCCGCACCTCC 60.203 66.667 0.00 0.00 0.00 4.30
1234 3408 2.202756 GTAAGCTCCGCACCTCCG 60.203 66.667 0.00 0.00 0.00 4.63
1235 3409 4.143333 TAAGCTCCGCACCTCCGC 62.143 66.667 0.00 0.00 0.00 5.54
1340 3527 1.006805 CCCGTGCTCCATCTCGATC 60.007 63.158 0.00 0.00 0.00 3.69
1369 3557 1.003233 GATGCGGGATTCCCTAGCC 60.003 63.158 19.63 5.98 42.67 3.93
1378 3566 1.047034 ATTCCCTAGCCGCGTAGGTT 61.047 55.000 18.41 3.95 43.70 3.50
1432 3648 0.096454 GCGGCGTAGATTGGTTGTTC 59.904 55.000 9.37 0.00 0.00 3.18
1443 3659 5.053145 AGATTGGTTGTTCTCTATGCGATC 58.947 41.667 0.00 0.00 0.00 3.69
1444 3660 3.179443 TGGTTGTTCTCTATGCGATCC 57.821 47.619 0.00 0.00 0.00 3.36
1457 3673 3.509266 CGATCCGAACGCCAAATTC 57.491 52.632 0.00 0.00 0.00 2.17
1458 3674 0.724549 CGATCCGAACGCCAAATTCA 59.275 50.000 0.00 0.00 0.00 2.57
1491 3709 2.846039 TCTCTAGTCGATTTGCGTCC 57.154 50.000 0.00 0.00 41.80 4.79
1499 3717 3.056313 GATTTGCGTCCAGGGCTGC 62.056 63.158 1.39 1.39 0.00 5.25
1510 3728 2.586357 GGGCTGCGAGATTCCGAC 60.586 66.667 0.00 0.00 0.00 4.79
1519 3737 2.044860 CGAGATTCCGACGAGCATAAC 58.955 52.381 0.00 0.00 0.00 1.89
1530 3757 4.331962 GACGAGCATAACCGAAAATGTTC 58.668 43.478 0.00 0.00 32.02 3.18
1540 3767 2.412770 CCGAAAATGTTCCATTTGCTGC 59.587 45.455 3.17 0.00 0.00 5.25
1545 3772 4.804868 AATGTTCCATTTGCTGCATGTA 57.195 36.364 1.84 0.00 0.00 2.29
1568 3800 5.125367 TGTATTCTGTAGAGGCCAGAGTA 57.875 43.478 5.01 0.00 39.91 2.59
1571 3803 2.852449 TCTGTAGAGGCCAGAGTATCG 58.148 52.381 5.01 0.00 42.67 2.92
1575 3807 3.767673 TGTAGAGGCCAGAGTATCGTTTT 59.232 43.478 5.01 0.00 42.67 2.43
1576 3808 3.528597 AGAGGCCAGAGTATCGTTTTC 57.471 47.619 5.01 0.00 42.67 2.29
1578 3810 3.260884 AGAGGCCAGAGTATCGTTTTCAA 59.739 43.478 5.01 0.00 42.67 2.69
1581 3813 3.001330 GGCCAGAGTATCGTTTTCAATCG 59.999 47.826 0.00 0.00 42.67 3.34
1582 3814 3.001330 GCCAGAGTATCGTTTTCAATCGG 59.999 47.826 0.00 0.00 42.67 4.18
1584 3816 4.630069 CCAGAGTATCGTTTTCAATCGGTT 59.370 41.667 0.00 0.00 42.67 4.44
1585 3817 5.220416 CCAGAGTATCGTTTTCAATCGGTTC 60.220 44.000 0.00 0.00 42.67 3.62
1586 3818 4.561606 AGAGTATCGTTTTCAATCGGTTCG 59.438 41.667 0.00 0.00 42.67 3.95
1628 3860 2.619013 AGACGTGCTTTAATTGCTGC 57.381 45.000 0.00 0.00 0.00 5.25
1631 3863 1.200020 ACGTGCTTTAATTGCTGCCTC 59.800 47.619 0.00 0.00 0.00 4.70
1726 4038 2.214376 TTTCCCTGTGGCTGGTAATG 57.786 50.000 0.00 0.00 0.00 1.90
1733 4056 3.389329 CCTGTGGCTGGTAATGTAGAGAT 59.611 47.826 0.00 0.00 0.00 2.75
1734 4057 4.375272 CTGTGGCTGGTAATGTAGAGATG 58.625 47.826 0.00 0.00 0.00 2.90
1735 4058 3.134623 TGTGGCTGGTAATGTAGAGATGG 59.865 47.826 0.00 0.00 0.00 3.51
1736 4059 3.134804 GTGGCTGGTAATGTAGAGATGGT 59.865 47.826 0.00 0.00 0.00 3.55
1737 4060 4.344102 GTGGCTGGTAATGTAGAGATGGTA 59.656 45.833 0.00 0.00 0.00 3.25
1738 4061 4.966168 TGGCTGGTAATGTAGAGATGGTAA 59.034 41.667 0.00 0.00 0.00 2.85
1739 4062 5.606749 TGGCTGGTAATGTAGAGATGGTAAT 59.393 40.000 0.00 0.00 0.00 1.89
1740 4063 5.934625 GGCTGGTAATGTAGAGATGGTAATG 59.065 44.000 0.00 0.00 0.00 1.90
1741 4064 6.464465 GGCTGGTAATGTAGAGATGGTAATGT 60.464 42.308 0.00 0.00 0.00 2.71
1742 4065 7.256190 GGCTGGTAATGTAGAGATGGTAATGTA 60.256 40.741 0.00 0.00 0.00 2.29
1743 4066 7.815068 GCTGGTAATGTAGAGATGGTAATGTAG 59.185 40.741 0.00 0.00 0.00 2.74
1744 4067 9.078990 CTGGTAATGTAGAGATGGTAATGTAGA 57.921 37.037 0.00 0.00 0.00 2.59
1745 4068 9.078990 TGGTAATGTAGAGATGGTAATGTAGAG 57.921 37.037 0.00 0.00 0.00 2.43
1746 4069 9.298250 GGTAATGTAGAGATGGTAATGTAGAGA 57.702 37.037 0.00 0.00 0.00 3.10
1771 4094 2.380084 TGGTCTAACTCGGATTGTGC 57.620 50.000 0.00 0.00 0.00 4.57
1797 4120 4.254492 GTGGAGGACTTGAATACTGAACC 58.746 47.826 0.00 0.00 0.00 3.62
1842 4165 4.853468 TCCTGTTAGTGCCCAATCATAA 57.147 40.909 0.00 0.00 0.00 1.90
1843 4166 4.523083 TCCTGTTAGTGCCCAATCATAAC 58.477 43.478 0.00 0.00 0.00 1.89
1950 4273 8.523915 TGTTTTTATATGATCAATGGTGAGCT 57.476 30.769 0.00 0.00 40.95 4.09
1951 4274 8.407832 TGTTTTTATATGATCAATGGTGAGCTG 58.592 33.333 0.00 0.00 40.95 4.24
1952 4275 7.514784 TTTTATATGATCAATGGTGAGCTGG 57.485 36.000 0.00 0.00 40.95 4.85
1953 4276 1.688772 ATGATCAATGGTGAGCTGGC 58.311 50.000 0.00 0.00 40.95 4.85
1955 4278 1.442526 GATCAATGGTGAGCTGGCGG 61.443 60.000 0.00 0.00 37.20 6.13
1958 4281 3.628646 AATGGTGAGCTGGCGGGAC 62.629 63.158 0.00 0.00 0.00 4.46
1965 4288 3.075005 GCTGGCGGGACCTACTGA 61.075 66.667 0.00 0.00 40.22 3.41
1966 4289 2.435693 GCTGGCGGGACCTACTGAT 61.436 63.158 0.00 0.00 40.22 2.90
1967 4290 1.972660 GCTGGCGGGACCTACTGATT 61.973 60.000 0.00 0.00 40.22 2.57
1969 4292 1.335132 TGGCGGGACCTACTGATTCC 61.335 60.000 0.00 0.00 40.22 3.01
1970 4293 1.049289 GGCGGGACCTACTGATTCCT 61.049 60.000 0.00 0.00 34.51 3.36
1972 4295 1.776662 CGGGACCTACTGATTCCTGA 58.223 55.000 0.00 0.00 37.95 3.86
1974 4297 2.753247 GGGACCTACTGATTCCTGAGT 58.247 52.381 0.00 0.00 0.00 3.41
1976 4299 3.133183 GGGACCTACTGATTCCTGAGTTC 59.867 52.174 0.00 0.00 0.00 3.01
1977 4300 3.181485 GGACCTACTGATTCCTGAGTTCG 60.181 52.174 0.00 0.00 0.00 3.95
1978 4301 2.761208 ACCTACTGATTCCTGAGTTCGG 59.239 50.000 0.00 0.00 0.00 4.30
1980 4303 3.181485 CCTACTGATTCCTGAGTTCGGTC 60.181 52.174 0.00 0.00 31.64 4.79
1982 4305 2.900546 ACTGATTCCTGAGTTCGGTCTT 59.099 45.455 0.00 0.00 0.00 3.01
1983 4306 3.257393 CTGATTCCTGAGTTCGGTCTTG 58.743 50.000 0.00 0.00 0.00 3.02
1984 4307 2.897326 TGATTCCTGAGTTCGGTCTTGA 59.103 45.455 0.00 0.00 0.00 3.02
1987 4310 1.066858 TCCTGAGTTCGGTCTTGATGC 60.067 52.381 0.00 0.00 0.00 3.91
1989 4312 1.998315 CTGAGTTCGGTCTTGATGCTG 59.002 52.381 0.00 0.00 0.00 4.41
1992 4315 2.413453 GAGTTCGGTCTTGATGCTGTTC 59.587 50.000 0.00 0.00 0.00 3.18
1995 4318 3.057969 TCGGTCTTGATGCTGTTCATT 57.942 42.857 0.00 0.00 35.05 2.57
1997 4320 2.096496 CGGTCTTGATGCTGTTCATTCC 59.904 50.000 0.00 0.00 35.05 3.01
1999 4322 3.507233 GGTCTTGATGCTGTTCATTCCAA 59.493 43.478 0.00 0.00 35.05 3.53
2000 4323 4.380233 GGTCTTGATGCTGTTCATTCCAAG 60.380 45.833 0.00 0.00 37.89 3.61
2002 4325 4.216902 TCTTGATGCTGTTCATTCCAAGTG 59.783 41.667 0.00 0.00 37.83 3.16
2003 4326 3.489355 TGATGCTGTTCATTCCAAGTGT 58.511 40.909 0.00 0.00 35.05 3.55
2005 4328 5.069318 TGATGCTGTTCATTCCAAGTGTTA 58.931 37.500 0.00 0.00 35.05 2.41
2006 4329 5.534278 TGATGCTGTTCATTCCAAGTGTTAA 59.466 36.000 0.00 0.00 35.05 2.01
2007 4330 5.437289 TGCTGTTCATTCCAAGTGTTAAG 57.563 39.130 0.00 0.00 0.00 1.85
2008 4331 4.229876 GCTGTTCATTCCAAGTGTTAAGC 58.770 43.478 0.00 0.00 0.00 3.09
2011 4334 4.278170 TGTTCATTCCAAGTGTTAAGCAGG 59.722 41.667 0.00 0.00 0.00 4.85
2013 4336 4.724399 TCATTCCAAGTGTTAAGCAGGAA 58.276 39.130 0.00 0.00 39.24 3.36
2016 4339 5.452078 TTCCAAGTGTTAAGCAGGAATTG 57.548 39.130 0.00 0.00 30.73 2.32
2017 4340 4.724399 TCCAAGTGTTAAGCAGGAATTGA 58.276 39.130 0.00 0.00 0.00 2.57
2018 4341 5.324409 TCCAAGTGTTAAGCAGGAATTGAT 58.676 37.500 0.00 0.00 0.00 2.57
2022 4345 5.440610 AGTGTTAAGCAGGAATTGATAGGG 58.559 41.667 0.00 0.00 0.00 3.53
2023 4346 4.036852 GTGTTAAGCAGGAATTGATAGGGC 59.963 45.833 0.00 0.00 0.00 5.19
2025 4348 2.653234 AGCAGGAATTGATAGGGCTG 57.347 50.000 0.00 0.00 0.00 4.85
2026 4349 1.849039 AGCAGGAATTGATAGGGCTGT 59.151 47.619 0.00 0.00 0.00 4.40
2027 4350 1.952296 GCAGGAATTGATAGGGCTGTG 59.048 52.381 0.00 0.00 0.00 3.66
2028 4351 2.421952 GCAGGAATTGATAGGGCTGTGA 60.422 50.000 0.00 0.00 0.00 3.58
2029 4352 3.749954 GCAGGAATTGATAGGGCTGTGAT 60.750 47.826 0.00 0.00 0.00 3.06
2030 4353 4.505566 GCAGGAATTGATAGGGCTGTGATA 60.506 45.833 0.00 0.00 0.00 2.15
2031 4354 5.805751 GCAGGAATTGATAGGGCTGTGATAT 60.806 44.000 0.00 0.00 0.00 1.63
2033 4356 5.549228 AGGAATTGATAGGGCTGTGATATGA 59.451 40.000 0.00 0.00 0.00 2.15
2035 4358 6.888632 GGAATTGATAGGGCTGTGATATGATT 59.111 38.462 0.00 0.00 0.00 2.57
2037 4360 8.716674 AATTGATAGGGCTGTGATATGATTTT 57.283 30.769 0.00 0.00 0.00 1.82
2038 4361 8.716674 ATTGATAGGGCTGTGATATGATTTTT 57.283 30.769 0.00 0.00 0.00 1.94
2039 4362 7.514784 TGATAGGGCTGTGATATGATTTTTG 57.485 36.000 0.00 0.00 0.00 2.44
2040 4363 7.062322 TGATAGGGCTGTGATATGATTTTTGT 58.938 34.615 0.00 0.00 0.00 2.83
2045 4368 6.698766 GGGCTGTGATATGATTTTTGTTGATC 59.301 38.462 0.00 0.00 0.00 2.92
2050 4373 9.142515 TGTGATATGATTTTTGTTGATCTTTGC 57.857 29.630 0.00 0.00 0.00 3.68
2051 4374 8.598075 GTGATATGATTTTTGTTGATCTTTGCC 58.402 33.333 0.00 0.00 0.00 4.52
2052 4375 8.312564 TGATATGATTTTTGTTGATCTTTGCCA 58.687 29.630 0.00 0.00 0.00 4.92
2055 4378 7.192148 TGATTTTTGTTGATCTTTGCCAATG 57.808 32.000 0.00 0.00 0.00 2.82
2057 4380 5.987777 TTTTGTTGATCTTTGCCAATGTG 57.012 34.783 0.00 0.00 0.00 3.21
2058 4381 4.933505 TTGTTGATCTTTGCCAATGTGA 57.066 36.364 0.00 0.00 0.00 3.58
2059 4382 4.933505 TGTTGATCTTTGCCAATGTGAA 57.066 36.364 0.00 0.00 0.00 3.18
2060 4383 5.471556 TGTTGATCTTTGCCAATGTGAAT 57.528 34.783 0.00 0.00 0.00 2.57
2062 4385 6.289834 TGTTGATCTTTGCCAATGTGAATTT 58.710 32.000 0.00 0.00 0.00 1.82
2065 4388 6.990798 TGATCTTTGCCAATGTGAATTTGTA 58.009 32.000 0.00 0.00 0.00 2.41
2066 4389 7.440198 TGATCTTTGCCAATGTGAATTTGTAA 58.560 30.769 0.00 0.00 0.00 2.41
2067 4390 7.930325 TGATCTTTGCCAATGTGAATTTGTAAA 59.070 29.630 0.00 0.00 0.00 2.01
2069 4392 8.674263 TCTTTGCCAATGTGAATTTGTAAAAT 57.326 26.923 0.00 0.00 0.00 1.82
2070 4393 8.557864 TCTTTGCCAATGTGAATTTGTAAAATG 58.442 29.630 0.00 0.00 0.00 2.32
2074 4397 7.076983 GCCAATGTGAATTTGTAAAATGTTGG 58.923 34.615 0.00 0.00 35.52 3.77
2075 4398 7.255070 GCCAATGTGAATTTGTAAAATGTTGGT 60.255 33.333 0.00 0.00 35.03 3.67
2076 4399 8.619546 CCAATGTGAATTTGTAAAATGTTGGTT 58.380 29.630 0.00 0.00 0.00 3.67
2080 4403 7.965107 TGTGAATTTGTAAAATGTTGGTTTTGC 59.035 29.630 0.00 0.00 35.22 3.68
2116 4439 9.988815 ATCATCATCAAACTCACTATACCTTAC 57.011 33.333 0.00 0.00 0.00 2.34
2118 4441 9.823647 CATCATCAAACTCACTATACCTTACTT 57.176 33.333 0.00 0.00 0.00 2.24
2121 4444 9.307121 CATCAAACTCACTATACCTTACTTCTG 57.693 37.037 0.00 0.00 0.00 3.02
2122 4445 8.418597 TCAAACTCACTATACCTTACTTCTGT 57.581 34.615 0.00 0.00 0.00 3.41
2124 4447 9.141400 CAAACTCACTATACCTTACTTCTGTTC 57.859 37.037 0.00 0.00 0.00 3.18
2126 4449 9.750783 AACTCACTATACCTTACTTCTGTTCTA 57.249 33.333 0.00 0.00 0.00 2.10
2127 4450 9.750783 ACTCACTATACCTTACTTCTGTTCTAA 57.249 33.333 0.00 0.00 0.00 2.10
2129 4452 8.671921 TCACTATACCTTACTTCTGTTCTAACG 58.328 37.037 0.00 0.00 0.00 3.18
2131 4454 6.847421 ATACCTTACTTCTGTTCTAACGGT 57.153 37.500 1.80 0.00 36.65 4.83
2134 4457 2.165319 ACTTCTGTTCTAACGGTGGC 57.835 50.000 1.80 0.00 36.65 5.01
2136 4459 0.947180 TTCTGTTCTAACGGTGGCGC 60.947 55.000 0.00 0.00 36.65 6.53
2137 4460 1.666553 CTGTTCTAACGGTGGCGCA 60.667 57.895 10.83 0.00 0.00 6.09
2138 4461 1.225376 CTGTTCTAACGGTGGCGCAA 61.225 55.000 10.83 0.00 0.00 4.85
2139 4462 1.225376 TGTTCTAACGGTGGCGCAAG 61.225 55.000 10.83 0.00 43.44 4.01
2205 4531 5.932303 CAGTTTCATTCTCGAACTTTAGGGA 59.068 40.000 0.00 0.00 31.63 4.20
2261 4587 5.869579 TCAGCTAATCTCAAACTGTTTCCT 58.130 37.500 2.13 0.00 0.00 3.36
2301 4627 9.841880 GTTGAATAACTTGGAGTCCTTTTATTC 57.158 33.333 25.46 25.46 36.85 1.75
2326 4652 7.278646 TCGTATCCAGAATGAGTTTGATTTCAG 59.721 37.037 0.00 0.00 39.69 3.02
2355 4681 7.135089 TCTATAAAGCGTAAACAATGCAACA 57.865 32.000 0.00 0.00 43.05 3.33
2390 4716 5.416271 TCTGATGTTGGTTAGGGAACTAC 57.584 43.478 0.00 0.00 44.30 2.73
2485 4811 8.879759 AGCAATTATTCATGCATTTTTCTTGAG 58.120 29.630 0.00 0.00 44.95 3.02
2771 5978 0.109597 GGCCAATGCTTCGACTGTTG 60.110 55.000 0.00 0.00 37.74 3.33
2813 6020 6.064717 ACTGCTTTCTCACTTTGTCCTTATT 58.935 36.000 0.00 0.00 0.00 1.40
2849 6577 9.644993 GTTTGTTGGTTAAAATTTATGTTCAGC 57.355 29.630 0.00 0.00 0.00 4.26
2855 6583 7.816995 TGGTTAAAATTTATGTTCAGCATGTCC 59.183 33.333 0.00 0.00 38.47 4.02
3029 6757 5.904362 ACATCTTCTTGTTTATGGCTTCC 57.096 39.130 0.00 0.00 0.00 3.46
3054 6782 6.256643 ACACTTTGGGACTAAACTTAAGGA 57.743 37.500 7.53 0.00 0.00 3.36
3068 6796 4.504858 ACTTAAGGAACATAGCAGGTTCG 58.495 43.478 7.53 0.00 44.29 3.95
3215 6950 1.542472 TGTCATGCCAGCACTGATTTG 59.458 47.619 0.00 0.00 0.00 2.32
3223 6958 4.168760 GCCAGCACTGATTTGAACATAAC 58.831 43.478 0.00 0.00 0.00 1.89
3245 6980 2.886523 CTCCAAATGCAGTCTGGTTGAA 59.113 45.455 12.77 0.00 0.00 2.69
3256 6991 8.177119 TGCAGTCTGGTTGAAAGTAATTTATT 57.823 30.769 1.14 0.00 0.00 1.40
3393 7129 7.716799 TGGGTTAGTTTATTTTCATCTGCAT 57.283 32.000 0.00 0.00 0.00 3.96
3417 7153 9.046296 CATGTAGGTAAGAAAGGTTATTGCTAG 57.954 37.037 0.00 0.00 0.00 3.42
3425 7167 1.916181 AGGTTATTGCTAGGTGGCACT 59.084 47.619 18.45 6.21 42.27 4.40
3426 7168 2.017049 GGTTATTGCTAGGTGGCACTG 58.983 52.381 18.45 9.29 42.27 3.66
3439 7181 1.211743 GGCACTGCTGCTTTTTCAAC 58.788 50.000 0.00 0.00 43.66 3.18
3489 7317 4.136796 TGGATATTGCTGTAGTGGATTGC 58.863 43.478 0.00 0.00 0.00 3.56
3528 7363 8.737168 ACAGTACATGCTTATATTGATGTTGT 57.263 30.769 0.00 0.00 31.56 3.32
3536 7371 7.568349 TGCTTATATTGATGTTGTTCTCTCCT 58.432 34.615 0.00 0.00 0.00 3.69
3545 7380 7.483307 TGATGTTGTTCTCTCCTTTCTTTTTG 58.517 34.615 0.00 0.00 0.00 2.44
3614 7449 0.889186 TCTTGGCGGAGTTTTGGAGC 60.889 55.000 0.00 0.00 0.00 4.70
3640 7475 5.437289 TGTTGATTGAACCTAGCTGTTTG 57.563 39.130 0.00 0.00 33.07 2.93
3688 7523 6.418226 GTCATAGTATGTCCTGAAAGTTAGCG 59.582 42.308 9.94 0.00 0.00 4.26
3735 7572 1.395608 ACATTACGCGGAAACCATTCG 59.604 47.619 8.38 0.00 36.36 3.34
3777 7614 1.485066 ACCCTATGGCTCCGTAAGTTG 59.515 52.381 0.00 0.00 33.59 3.16
3782 7624 0.834687 TGGCTCCGTAAGTTGGGTCT 60.835 55.000 0.00 0.00 0.00 3.85
3786 7628 0.599558 TCCGTAAGTTGGGTCTGTCG 59.400 55.000 0.00 0.00 0.00 4.35
3871 7713 6.398309 GCGCTGTTACTATACGTTATACTTGC 60.398 42.308 0.00 0.00 0.00 4.01
3877 7722 9.604626 GTTACTATACGTTATACTTGCGATCTT 57.395 33.333 0.00 0.00 0.00 2.40
3878 7723 9.603298 TTACTATACGTTATACTTGCGATCTTG 57.397 33.333 0.00 0.00 0.00 3.02
3879 7724 7.082602 ACTATACGTTATACTTGCGATCTTGG 58.917 38.462 0.00 0.00 0.00 3.61
3890 7735 0.881118 CGATCTTGGTGGTGGTTTGG 59.119 55.000 0.00 0.00 0.00 3.28
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.605640 ACCTTACTGCGGTGTAGTAAAA 57.394 40.909 8.92 0.00 39.44 1.52
1 2 4.281688 AGAACCTTACTGCGGTGTAGTAAA 59.718 41.667 8.92 0.00 39.44 2.01
2 3 3.828451 AGAACCTTACTGCGGTGTAGTAA 59.172 43.478 8.92 7.18 38.13 2.24
3 4 3.424703 AGAACCTTACTGCGGTGTAGTA 58.575 45.455 8.92 0.00 34.33 1.82
5 6 4.445452 TTAGAACCTTACTGCGGTGTAG 57.555 45.455 8.92 5.55 34.33 2.74
6 7 4.523943 TCTTTAGAACCTTACTGCGGTGTA 59.476 41.667 8.92 0.00 34.33 2.90
7 8 3.322828 TCTTTAGAACCTTACTGCGGTGT 59.677 43.478 8.92 0.00 34.33 4.16
8 9 3.921677 TCTTTAGAACCTTACTGCGGTG 58.078 45.455 8.92 0.00 34.33 4.94
9 10 4.612264 TTCTTTAGAACCTTACTGCGGT 57.388 40.909 2.42 2.42 35.97 5.68
10 11 5.875359 AGAATTCTTTAGAACCTTACTGCGG 59.125 40.000 0.88 0.00 36.80 5.69
11 12 6.814146 AGAGAATTCTTTAGAACCTTACTGCG 59.186 38.462 9.87 0.00 36.80 5.18
12 13 7.065204 CCAGAGAATTCTTTAGAACCTTACTGC 59.935 40.741 9.87 0.00 36.80 4.40
13 14 7.550906 CCCAGAGAATTCTTTAGAACCTTACTG 59.449 40.741 9.87 7.32 36.80 2.74
14 15 7.625469 CCCAGAGAATTCTTTAGAACCTTACT 58.375 38.462 9.87 0.00 36.80 2.24
15 16 6.316640 GCCCAGAGAATTCTTTAGAACCTTAC 59.683 42.308 9.87 0.00 36.80 2.34
16 17 6.215636 AGCCCAGAGAATTCTTTAGAACCTTA 59.784 38.462 9.87 0.00 36.80 2.69
17 18 5.014649 AGCCCAGAGAATTCTTTAGAACCTT 59.985 40.000 9.87 0.00 36.80 3.50
18 19 4.538089 AGCCCAGAGAATTCTTTAGAACCT 59.462 41.667 9.87 0.00 36.80 3.50
22 23 8.109634 ACAAATAAGCCCAGAGAATTCTTTAGA 58.890 33.333 9.87 0.00 0.00 2.10
35 36 3.054361 AGGTGGACTACAAATAAGCCCAG 60.054 47.826 0.00 0.00 0.00 4.45
43 44 3.901222 CCCCAAAAAGGTGGACTACAAAT 59.099 43.478 0.00 0.00 41.65 2.32
60 61 0.548989 ATAGCAATGGTACGCCCCAA 59.451 50.000 0.00 0.00 38.20 4.12
61 62 1.346395 CTATAGCAATGGTACGCCCCA 59.654 52.381 0.00 0.00 39.27 4.96
67 68 6.367422 GTGCATCTTCTCTATAGCAATGGTAC 59.633 42.308 0.00 0.00 33.37 3.34
79 80 0.901827 TTGGCCGTGCATCTTCTCTA 59.098 50.000 0.00 0.00 0.00 2.43
102 103 1.891811 CCAGTCTCTGTCTCTCAGCAA 59.108 52.381 0.00 0.00 43.32 3.91
121 122 0.108329 TCTTTCGTGGAAGCGGATCC 60.108 55.000 0.00 0.00 40.10 3.36
122 123 1.281899 CTCTTTCGTGGAAGCGGATC 58.718 55.000 0.00 0.00 0.00 3.36
123 124 0.608640 ACTCTTTCGTGGAAGCGGAT 59.391 50.000 0.00 0.00 0.00 4.18
131 132 5.671329 GCAAAAGTATGCTACTCTTTCGTGG 60.671 44.000 0.00 0.00 43.06 4.94
146 147 5.487433 GTTAAATGGGGCAAGCAAAAGTAT 58.513 37.500 0.00 0.00 0.00 2.12
147 148 4.559704 CGTTAAATGGGGCAAGCAAAAGTA 60.560 41.667 0.00 0.00 0.00 2.24
172 173 3.585990 CATGTGATTCGCCGGCCC 61.586 66.667 23.46 8.40 0.00 5.80
174 175 3.585990 CCCATGTGATTCGCCGGC 61.586 66.667 19.07 19.07 0.00 6.13
175 176 3.585990 GCCCATGTGATTCGCCGG 61.586 66.667 0.00 0.00 0.00 6.13
213 214 1.065491 TGGCGGATGCATGTATATCCC 60.065 52.381 2.46 0.00 45.35 3.85
231 232 1.888215 CCTGTACTAGCATGGCATGG 58.112 55.000 27.48 14.27 0.00 3.66
248 249 2.359230 GCTGCTTTCGGACTGCCT 60.359 61.111 0.00 0.00 0.00 4.75
281 282 4.163458 TGTGTTGGAAGTTGGAACTACTCT 59.837 41.667 0.00 0.00 38.57 3.24
326 327 0.808755 CCCACGCATTGTACCTTTCC 59.191 55.000 0.00 0.00 0.00 3.13
341 342 2.362889 CAGTCCCCATTGGCCCAC 60.363 66.667 0.00 0.00 0.00 4.61
366 367 4.918810 AAAAATTGTCTGGTGTCTGTCC 57.081 40.909 0.00 0.00 0.00 4.02
408 409 4.699735 TGTGATTGTGATGGATGTGTAACC 59.300 41.667 0.00 0.00 34.36 2.85
417 418 7.126268 CCCTATATATCCTGTGATTGTGATGGA 59.874 40.741 0.00 0.00 32.18 3.41
434 435 5.665701 TCTTTGTCTCTGGCCCCTATATAT 58.334 41.667 0.00 0.00 0.00 0.86
435 436 5.087323 CTCTTTGTCTCTGGCCCCTATATA 58.913 45.833 0.00 0.00 0.00 0.86
436 437 3.906846 CTCTTTGTCTCTGGCCCCTATAT 59.093 47.826 0.00 0.00 0.00 0.86
437 438 3.052109 TCTCTTTGTCTCTGGCCCCTATA 60.052 47.826 0.00 0.00 0.00 1.31
454 455 2.988010 TCAAGCATGGCGTATCTCTT 57.012 45.000 0.00 0.00 0.00 2.85
473 474 1.208052 CCGTTGGACTCTGGACATGAT 59.792 52.381 0.00 0.00 0.00 2.45
497 498 4.179599 GAGGGAGGGAGGGAGGGG 62.180 77.778 0.00 0.00 0.00 4.79
512 513 0.758734 TGAATACGGCATGGAGGGAG 59.241 55.000 0.00 0.00 0.00 4.30
513 514 1.072173 CATGAATACGGCATGGAGGGA 59.928 52.381 0.00 0.00 39.48 4.20
514 515 1.527034 CATGAATACGGCATGGAGGG 58.473 55.000 0.00 0.00 39.48 4.30
515 516 0.877071 GCATGAATACGGCATGGAGG 59.123 55.000 0.00 0.00 42.53 4.30
516 517 0.877071 GGCATGAATACGGCATGGAG 59.123 55.000 0.00 0.00 42.53 3.86
517 518 0.884259 CGGCATGAATACGGCATGGA 60.884 55.000 0.00 0.00 42.53 3.41
519 520 0.235665 GTCGGCATGAATACGGCATG 59.764 55.000 0.00 0.00 44.52 4.06
520 521 1.221466 CGTCGGCATGAATACGGCAT 61.221 55.000 0.00 0.00 31.66 4.40
521 522 1.880796 CGTCGGCATGAATACGGCA 60.881 57.895 0.00 0.00 31.66 5.69
522 523 2.928361 CGTCGGCATGAATACGGC 59.072 61.111 0.00 0.00 0.00 5.68
547 753 7.928873 TCTATCCCTGTAAGAAATGAGGTTTT 58.071 34.615 0.00 0.00 34.07 2.43
562 768 6.531021 CAACCGGTATAATTTCTATCCCTGT 58.469 40.000 8.00 0.00 0.00 4.00
582 790 1.606668 TCCAGTTTCATGTTCGCAACC 59.393 47.619 0.00 0.00 0.00 3.77
584 792 4.582701 AAATCCAGTTTCATGTTCGCAA 57.417 36.364 0.00 0.00 0.00 4.85
605 813 8.534778 GCAAAATTTCAACAACAACAACAAAAA 58.465 25.926 0.00 0.00 0.00 1.94
606 814 7.917505 AGCAAAATTTCAACAACAACAACAAAA 59.082 25.926 0.00 0.00 0.00 2.44
607 815 7.420800 AGCAAAATTTCAACAACAACAACAAA 58.579 26.923 0.00 0.00 0.00 2.83
610 818 6.830736 AGAGCAAAATTTCAACAACAACAAC 58.169 32.000 0.00 0.00 0.00 3.32
611 819 7.432350 AAGAGCAAAATTTCAACAACAACAA 57.568 28.000 0.00 0.00 0.00 2.83
612 820 7.172190 TCAAAGAGCAAAATTTCAACAACAACA 59.828 29.630 0.00 0.00 0.00 3.33
613 821 7.517321 TCAAAGAGCAAAATTTCAACAACAAC 58.483 30.769 0.00 0.00 0.00 3.32
616 824 8.947304 TTTTCAAAGAGCAAAATTTCAACAAC 57.053 26.923 0.00 0.00 0.00 3.32
617 825 8.235905 CCTTTTCAAAGAGCAAAATTTCAACAA 58.764 29.630 0.56 0.00 38.28 2.83
618 826 7.626028 GCCTTTTCAAAGAGCAAAATTTCAACA 60.626 33.333 0.56 0.00 38.28 3.33
619 827 6.688385 GCCTTTTCAAAGAGCAAAATTTCAAC 59.312 34.615 0.56 0.00 38.28 3.18
647 905 0.460987 TTTGCAGCCGGTGGTTTTTG 60.461 50.000 1.90 0.00 0.00 2.44
648 906 0.250513 TTTTGCAGCCGGTGGTTTTT 59.749 45.000 1.90 0.00 0.00 1.94
686 2524 2.026522 CCGAGCCGGTTGTTTTTCA 58.973 52.632 1.90 0.00 42.73 2.69
687 2525 4.935630 CCGAGCCGGTTGTTTTTC 57.064 55.556 1.90 0.00 42.73 2.29
973 2816 2.123640 GACGAGGGAGGAGAGGGG 60.124 72.222 0.00 0.00 0.00 4.79
974 2817 2.123640 GGACGAGGGAGGAGAGGG 60.124 72.222 0.00 0.00 0.00 4.30
1236 3410 4.806339 AGCGAGGGGAAGGGGGAG 62.806 72.222 0.00 0.00 0.00 4.30
1283 3470 6.662865 ACCCTAGATCAAGAGATACACATG 57.337 41.667 0.00 0.00 33.72 3.21
1284 3471 6.463614 GCAACCCTAGATCAAGAGATACACAT 60.464 42.308 0.00 0.00 33.72 3.21
1340 3527 1.669115 CCCGCATCAGATTAGGCCG 60.669 63.158 0.00 0.00 0.00 6.13
1393 3581 3.485431 CGAAGCAGAGCACCGCTG 61.485 66.667 0.00 0.00 39.88 5.18
1394 3582 4.749310 CCGAAGCAGAGCACCGCT 62.749 66.667 0.00 0.00 43.88 5.52
1417 3633 4.207224 CGCATAGAGAACAACCAATCTACG 59.793 45.833 0.00 0.00 0.00 3.51
1426 3642 3.079960 TCGGATCGCATAGAGAACAAC 57.920 47.619 0.00 0.00 0.00 3.32
1443 3659 0.727793 CCGTTGAATTTGGCGTTCGG 60.728 55.000 0.00 0.00 0.00 4.30
1444 3660 0.727793 CCCGTTGAATTTGGCGTTCG 60.728 55.000 0.00 0.00 0.00 3.95
1457 3673 4.822026 ACTAGAGAAAGTCAATCCCGTTG 58.178 43.478 0.00 0.00 39.25 4.10
1458 3674 4.380655 CGACTAGAGAAAGTCAATCCCGTT 60.381 45.833 0.00 0.00 45.13 4.44
1469 3686 3.548268 GGACGCAAATCGACTAGAGAAAG 59.452 47.826 0.00 0.00 41.67 2.62
1491 3709 2.587194 CGGAATCTCGCAGCCCTG 60.587 66.667 0.00 0.00 0.00 4.45
1499 3717 2.044860 GTTATGCTCGTCGGAATCTCG 58.955 52.381 0.00 0.00 0.00 4.04
1510 3728 3.126171 TGGAACATTTTCGGTTATGCTCG 59.874 43.478 0.00 0.00 31.78 5.03
1530 3757 5.918576 CAGAATACATACATGCAGCAAATGG 59.081 40.000 16.11 3.72 0.00 3.16
1540 3767 6.015095 TCTGGCCTCTACAGAATACATACATG 60.015 42.308 3.32 0.00 41.66 3.21
1545 3772 4.551671 ACTCTGGCCTCTACAGAATACAT 58.448 43.478 3.32 0.00 43.74 2.29
1568 3800 3.930229 TGATCGAACCGATTGAAAACGAT 59.070 39.130 0.00 0.00 47.00 3.73
1571 3803 4.156182 GGTTGATCGAACCGATTGAAAAC 58.844 43.478 10.14 6.50 47.00 2.43
1582 3814 1.203052 TCCTACACCGGTTGATCGAAC 59.797 52.381 2.97 0.00 0.00 3.95
1584 3816 1.475280 CTTCCTACACCGGTTGATCGA 59.525 52.381 2.97 0.00 0.00 3.59
1585 3817 1.475280 TCTTCCTACACCGGTTGATCG 59.525 52.381 2.97 0.00 0.00 3.69
1586 3818 2.738964 GCTCTTCCTACACCGGTTGATC 60.739 54.545 2.97 0.00 0.00 2.92
1594 3826 1.272769 ACGTCTTGCTCTTCCTACACC 59.727 52.381 0.00 0.00 0.00 4.16
1628 3860 0.107456 AAGCCATCACATAGCCGAGG 59.893 55.000 0.00 0.00 0.00 4.63
1631 3863 1.667236 TCAAAGCCATCACATAGCCG 58.333 50.000 0.00 0.00 0.00 5.52
1733 4056 7.437713 AGACCATTCATTCTCTACATTACCA 57.562 36.000 0.00 0.00 0.00 3.25
1734 4057 9.262358 GTTAGACCATTCATTCTCTACATTACC 57.738 37.037 0.00 0.00 0.00 2.85
1737 4060 7.923344 CGAGTTAGACCATTCATTCTCTACATT 59.077 37.037 0.00 0.00 0.00 2.71
1738 4061 7.429633 CGAGTTAGACCATTCATTCTCTACAT 58.570 38.462 0.00 0.00 0.00 2.29
1739 4062 6.183360 CCGAGTTAGACCATTCATTCTCTACA 60.183 42.308 0.00 0.00 0.00 2.74
1740 4063 6.039493 TCCGAGTTAGACCATTCATTCTCTAC 59.961 42.308 0.00 0.00 0.00 2.59
1741 4064 6.127101 TCCGAGTTAGACCATTCATTCTCTA 58.873 40.000 0.00 0.00 0.00 2.43
1742 4065 4.956700 TCCGAGTTAGACCATTCATTCTCT 59.043 41.667 0.00 0.00 0.00 3.10
1743 4066 5.263968 TCCGAGTTAGACCATTCATTCTC 57.736 43.478 0.00 0.00 0.00 2.87
1744 4067 5.878406 ATCCGAGTTAGACCATTCATTCT 57.122 39.130 0.00 0.00 0.00 2.40
1745 4068 5.817816 ACAATCCGAGTTAGACCATTCATTC 59.182 40.000 0.00 0.00 0.00 2.67
1746 4069 5.586243 CACAATCCGAGTTAGACCATTCATT 59.414 40.000 0.00 0.00 0.00 2.57
1747 4070 5.118990 CACAATCCGAGTTAGACCATTCAT 58.881 41.667 0.00 0.00 0.00 2.57
1748 4071 4.503910 CACAATCCGAGTTAGACCATTCA 58.496 43.478 0.00 0.00 0.00 2.57
1762 4085 0.742281 CCTCCACAGAGCACAATCCG 60.742 60.000 0.00 0.00 38.96 4.18
1771 4094 4.464244 TCAGTATTCAAGTCCTCCACAGAG 59.536 45.833 0.00 0.00 40.09 3.35
1797 4120 2.505866 GCGCTGTAATTTTGAAGGACG 58.494 47.619 0.00 0.00 0.00 4.79
1842 4165 7.164233 AGTGGTATAACTATCTAGGACAGGT 57.836 40.000 0.00 0.00 0.00 4.00
1843 4166 9.233649 CTAAGTGGTATAACTATCTAGGACAGG 57.766 40.741 0.00 0.00 0.00 4.00
1924 4247 9.139734 AGCTCACCATTGATCATATAAAAACAT 57.860 29.630 0.00 0.00 0.00 2.71
1925 4248 8.407832 CAGCTCACCATTGATCATATAAAAACA 58.592 33.333 0.00 0.00 0.00 2.83
1926 4249 7.864379 CCAGCTCACCATTGATCATATAAAAAC 59.136 37.037 0.00 0.00 0.00 2.43
1927 4250 7.470424 GCCAGCTCACCATTGATCATATAAAAA 60.470 37.037 0.00 0.00 0.00 1.94
1928 4251 6.016024 GCCAGCTCACCATTGATCATATAAAA 60.016 38.462 0.00 0.00 0.00 1.52
1930 4253 5.005740 GCCAGCTCACCATTGATCATATAA 58.994 41.667 0.00 0.00 0.00 0.98
1932 4255 3.418995 GCCAGCTCACCATTGATCATAT 58.581 45.455 0.00 0.00 0.00 1.78
1934 4257 1.688772 GCCAGCTCACCATTGATCAT 58.311 50.000 0.00 0.00 0.00 2.45
1936 4259 1.442526 CCGCCAGCTCACCATTGATC 61.443 60.000 0.00 0.00 0.00 2.92
1937 4260 1.452651 CCGCCAGCTCACCATTGAT 60.453 57.895 0.00 0.00 0.00 2.57
1939 4262 3.136123 CCCGCCAGCTCACCATTG 61.136 66.667 0.00 0.00 0.00 2.82
1946 4269 2.760385 AGTAGGTCCCGCCAGCTC 60.760 66.667 0.00 0.00 40.61 4.09
1947 4270 2.880629 ATCAGTAGGTCCCGCCAGCT 62.881 60.000 0.00 0.00 40.61 4.24
1948 4271 1.972660 AATCAGTAGGTCCCGCCAGC 61.973 60.000 0.00 0.00 40.61 4.85
1949 4272 0.105039 GAATCAGTAGGTCCCGCCAG 59.895 60.000 0.00 0.00 40.61 4.85
1950 4273 1.335132 GGAATCAGTAGGTCCCGCCA 61.335 60.000 0.00 0.00 40.61 5.69
1951 4274 1.049289 AGGAATCAGTAGGTCCCGCC 61.049 60.000 0.00 0.00 37.58 6.13
1952 4275 0.105039 CAGGAATCAGTAGGTCCCGC 59.895 60.000 0.00 0.00 31.25 6.13
1953 4276 1.683917 CTCAGGAATCAGTAGGTCCCG 59.316 57.143 0.00 0.00 31.25 5.14
1955 4278 3.181485 CGAACTCAGGAATCAGTAGGTCC 60.181 52.174 0.00 0.00 0.00 4.46
1958 4281 2.761208 ACCGAACTCAGGAATCAGTAGG 59.239 50.000 0.00 0.00 0.00 3.18
1965 4288 3.866651 CATCAAGACCGAACTCAGGAAT 58.133 45.455 0.00 0.00 0.00 3.01
1966 4289 2.612972 GCATCAAGACCGAACTCAGGAA 60.613 50.000 0.00 0.00 0.00 3.36
1967 4290 1.066858 GCATCAAGACCGAACTCAGGA 60.067 52.381 0.00 0.00 0.00 3.86
1969 4292 1.998315 CAGCATCAAGACCGAACTCAG 59.002 52.381 0.00 0.00 0.00 3.35
1970 4293 1.344438 ACAGCATCAAGACCGAACTCA 59.656 47.619 0.00 0.00 0.00 3.41
1972 4295 2.224281 TGAACAGCATCAAGACCGAACT 60.224 45.455 0.00 0.00 0.00 3.01
1974 4297 2.542020 TGAACAGCATCAAGACCGAA 57.458 45.000 0.00 0.00 0.00 4.30
1976 4299 2.096496 GGAATGAACAGCATCAAGACCG 59.904 50.000 0.00 0.00 35.78 4.79
1977 4300 3.084039 TGGAATGAACAGCATCAAGACC 58.916 45.455 0.00 0.00 35.78 3.85
1978 4301 4.217118 ACTTGGAATGAACAGCATCAAGAC 59.783 41.667 11.51 0.00 39.43 3.01
1980 4303 4.022589 ACACTTGGAATGAACAGCATCAAG 60.023 41.667 0.00 0.00 41.27 3.02
1982 4305 3.489355 ACACTTGGAATGAACAGCATCA 58.511 40.909 0.00 0.00 35.78 3.07
1983 4306 4.510038 AACACTTGGAATGAACAGCATC 57.490 40.909 0.00 0.00 35.78 3.91
1984 4307 5.565439 GCTTAACACTTGGAATGAACAGCAT 60.565 40.000 0.00 0.00 39.43 3.79
1987 4310 5.437289 TGCTTAACACTTGGAATGAACAG 57.563 39.130 0.00 0.00 0.00 3.16
1989 4312 4.518970 TCCTGCTTAACACTTGGAATGAAC 59.481 41.667 0.00 0.00 0.00 3.18
1992 4315 5.649782 ATTCCTGCTTAACACTTGGAATG 57.350 39.130 0.00 0.00 41.16 2.67
1995 4318 4.724399 TCAATTCCTGCTTAACACTTGGA 58.276 39.130 0.00 0.00 0.00 3.53
1997 4320 6.183360 CCCTATCAATTCCTGCTTAACACTTG 60.183 42.308 0.00 0.00 0.00 3.16
1999 4322 5.440610 CCCTATCAATTCCTGCTTAACACT 58.559 41.667 0.00 0.00 0.00 3.55
2000 4323 4.036852 GCCCTATCAATTCCTGCTTAACAC 59.963 45.833 0.00 0.00 0.00 3.32
2002 4325 4.276926 CAGCCCTATCAATTCCTGCTTAAC 59.723 45.833 0.00 0.00 0.00 2.01
2003 4326 4.079787 ACAGCCCTATCAATTCCTGCTTAA 60.080 41.667 0.00 0.00 0.00 1.85
2005 4328 2.243221 ACAGCCCTATCAATTCCTGCTT 59.757 45.455 0.00 0.00 0.00 3.91
2006 4329 1.849039 ACAGCCCTATCAATTCCTGCT 59.151 47.619 0.00 0.00 0.00 4.24
2007 4330 1.952296 CACAGCCCTATCAATTCCTGC 59.048 52.381 0.00 0.00 0.00 4.85
2008 4331 3.565764 TCACAGCCCTATCAATTCCTG 57.434 47.619 0.00 0.00 0.00 3.86
2011 4334 7.934855 AATCATATCACAGCCCTATCAATTC 57.065 36.000 0.00 0.00 0.00 2.17
2013 4336 8.582437 CAAAAATCATATCACAGCCCTATCAAT 58.418 33.333 0.00 0.00 0.00 2.57
2016 4339 7.516198 ACAAAAATCATATCACAGCCCTATC 57.484 36.000 0.00 0.00 0.00 2.08
2017 4340 7.560991 TCAACAAAAATCATATCACAGCCCTAT 59.439 33.333 0.00 0.00 0.00 2.57
2018 4341 6.889177 TCAACAAAAATCATATCACAGCCCTA 59.111 34.615 0.00 0.00 0.00 3.53
2022 4345 8.922058 AAGATCAACAAAAATCATATCACAGC 57.078 30.769 0.00 0.00 0.00 4.40
2025 4348 8.598075 GGCAAAGATCAACAAAAATCATATCAC 58.402 33.333 0.00 0.00 0.00 3.06
2026 4349 8.312564 TGGCAAAGATCAACAAAAATCATATCA 58.687 29.630 0.00 0.00 0.00 2.15
2027 4350 8.706492 TGGCAAAGATCAACAAAAATCATATC 57.294 30.769 0.00 0.00 0.00 1.63
2028 4351 9.675464 ATTGGCAAAGATCAACAAAAATCATAT 57.325 25.926 3.01 0.00 0.00 1.78
2029 4352 8.937884 CATTGGCAAAGATCAACAAAAATCATA 58.062 29.630 3.01 0.00 0.00 2.15
2030 4353 7.446013 ACATTGGCAAAGATCAACAAAAATCAT 59.554 29.630 9.74 0.00 0.00 2.45
2031 4354 6.766944 ACATTGGCAAAGATCAACAAAAATCA 59.233 30.769 9.74 0.00 0.00 2.57
2033 4356 6.766944 TCACATTGGCAAAGATCAACAAAAAT 59.233 30.769 9.74 0.00 0.00 1.82
2035 4358 5.668471 TCACATTGGCAAAGATCAACAAAA 58.332 33.333 9.74 0.00 0.00 2.44
2037 4360 4.933505 TCACATTGGCAAAGATCAACAA 57.066 36.364 9.74 0.00 0.00 2.83
2038 4361 4.933505 TTCACATTGGCAAAGATCAACA 57.066 36.364 9.74 0.00 0.00 3.33
2039 4362 6.203338 ACAAATTCACATTGGCAAAGATCAAC 59.797 34.615 9.74 0.00 32.02 3.18
2040 4363 6.289834 ACAAATTCACATTGGCAAAGATCAA 58.710 32.000 9.74 0.00 32.02 2.57
2045 4368 8.344098 ACATTTTACAAATTCACATTGGCAAAG 58.656 29.630 3.01 1.42 32.02 2.77
2049 4372 7.076983 CCAACATTTTACAAATTCACATTGGC 58.923 34.615 0.00 0.00 32.02 4.52
2050 4373 8.152309 ACCAACATTTTACAAATTCACATTGG 57.848 30.769 0.00 0.00 38.12 3.16
2055 4378 8.180920 AGCAAAACCAACATTTTACAAATTCAC 58.819 29.630 0.00 0.00 30.57 3.18
2090 4413 9.988815 GTAAGGTATAGTGAGTTTGATGATGAT 57.011 33.333 0.00 0.00 0.00 2.45
2092 4415 9.823647 AAGTAAGGTATAGTGAGTTTGATGATG 57.176 33.333 0.00 0.00 0.00 3.07
2094 4417 9.256228 AGAAGTAAGGTATAGTGAGTTTGATGA 57.744 33.333 0.00 0.00 0.00 2.92
2095 4418 9.307121 CAGAAGTAAGGTATAGTGAGTTTGATG 57.693 37.037 0.00 0.00 0.00 3.07
2096 4419 9.036980 ACAGAAGTAAGGTATAGTGAGTTTGAT 57.963 33.333 0.00 0.00 0.00 2.57
2097 4420 8.418597 ACAGAAGTAAGGTATAGTGAGTTTGA 57.581 34.615 0.00 0.00 0.00 2.69
2098 4421 9.141400 GAACAGAAGTAAGGTATAGTGAGTTTG 57.859 37.037 0.00 0.00 0.00 2.93
2099 4422 9.091220 AGAACAGAAGTAAGGTATAGTGAGTTT 57.909 33.333 0.00 0.00 0.00 2.66
2100 4423 8.653036 AGAACAGAAGTAAGGTATAGTGAGTT 57.347 34.615 0.00 0.00 0.00 3.01
2104 4427 7.914346 CCGTTAGAACAGAAGTAAGGTATAGTG 59.086 40.741 0.00 0.00 0.00 2.74
2106 4429 7.914346 CACCGTTAGAACAGAAGTAAGGTATAG 59.086 40.741 0.00 0.00 0.00 1.31
2107 4430 7.148018 CCACCGTTAGAACAGAAGTAAGGTATA 60.148 40.741 0.00 0.00 0.00 1.47
2108 4431 6.350780 CCACCGTTAGAACAGAAGTAAGGTAT 60.351 42.308 0.00 0.00 0.00 2.73
2109 4432 5.047802 CCACCGTTAGAACAGAAGTAAGGTA 60.048 44.000 0.00 0.00 0.00 3.08
2110 4433 4.262335 CCACCGTTAGAACAGAAGTAAGGT 60.262 45.833 0.00 0.00 0.00 3.50
2113 4436 3.656559 GCCACCGTTAGAACAGAAGTAA 58.343 45.455 0.00 0.00 0.00 2.24
2114 4437 2.352030 CGCCACCGTTAGAACAGAAGTA 60.352 50.000 0.00 0.00 0.00 2.24
2115 4438 1.604693 CGCCACCGTTAGAACAGAAGT 60.605 52.381 0.00 0.00 0.00 3.01
2116 4439 1.068474 CGCCACCGTTAGAACAGAAG 58.932 55.000 0.00 0.00 0.00 2.85
2118 4441 1.373748 GCGCCACCGTTAGAACAGA 60.374 57.895 0.00 0.00 36.67 3.41
2119 4442 1.225376 TTGCGCCACCGTTAGAACAG 61.225 55.000 4.18 0.00 36.67 3.16
2121 4444 1.495951 CTTGCGCCACCGTTAGAAC 59.504 57.895 4.18 0.00 36.67 3.01
2122 4445 2.322081 GCTTGCGCCACCGTTAGAA 61.322 57.895 4.18 0.00 36.67 2.10
2136 4459 3.067106 CCTATATGGTGTAAGCGGCTTG 58.933 50.000 24.75 4.08 36.92 4.01
2137 4460 2.550208 GCCTATATGGTGTAAGCGGCTT 60.550 50.000 20.32 20.32 36.92 4.35
2138 4461 1.002087 GCCTATATGGTGTAAGCGGCT 59.998 52.381 0.00 0.00 36.92 5.52
2139 4462 1.002087 AGCCTATATGGTGTAAGCGGC 59.998 52.381 0.00 0.00 36.32 6.53
2140 4463 2.688507 CAGCCTATATGGTGTAAGCGG 58.311 52.381 0.00 0.00 36.92 5.52
2141 4464 2.069273 GCAGCCTATATGGTGTAAGCG 58.931 52.381 8.67 0.00 36.92 4.68
2205 4531 6.053632 TCACATAGACATCAATGGACAAGT 57.946 37.500 0.00 0.00 0.00 3.16
2301 4627 7.278646 TCTGAAATCAAACTCATTCTGGATACG 59.721 37.037 0.00 0.00 42.51 3.06
2326 4652 9.284594 TGCATTGTTTACGCTTTATAGAATTTC 57.715 29.630 0.00 0.00 0.00 2.17
2355 4681 6.711277 ACCAACATCAGATACACAGTAACAT 58.289 36.000 0.00 0.00 0.00 2.71
2406 4732 5.630121 TGGAAAACAGACAATCCACATAGT 58.370 37.500 0.00 0.00 37.05 2.12
2414 4740 6.817765 TTATCAGGTGGAAAACAGACAATC 57.182 37.500 0.00 0.00 0.00 2.67
2458 4784 8.661257 TCAAGAAAAATGCATGAATAATTGCTG 58.339 29.630 0.00 0.00 39.60 4.41
2517 4843 7.633361 GCATATGCCAACTCTGAATAATTTG 57.367 36.000 17.26 0.00 34.31 2.32
2594 5160 7.456725 ACATGCATTAGACCATAGATTTAGCT 58.543 34.615 0.00 0.00 0.00 3.32
2595 5161 7.678947 ACATGCATTAGACCATAGATTTAGC 57.321 36.000 0.00 0.00 0.00 3.09
2758 5358 1.224069 GAGCAGCAACAGTCGAAGCA 61.224 55.000 0.00 0.00 0.00 3.91
3029 6757 6.544564 TCCTTAAGTTTAGTCCCAAAGTGTTG 59.455 38.462 0.97 0.00 34.25 3.33
3040 6768 7.104290 ACCTGCTATGTTCCTTAAGTTTAGTC 58.896 38.462 0.97 0.00 0.00 2.59
3054 6782 4.827692 TCAACATACGAACCTGCTATGTT 58.172 39.130 0.00 0.00 40.26 2.71
3157 6891 3.412386 CAACAGTTGGAGGGTTAGGAAG 58.588 50.000 5.25 0.00 0.00 3.46
3191 6926 3.070476 TCAGTGCTGGCATGACAATAA 57.930 42.857 1.11 0.00 0.00 1.40
3196 6931 1.814394 TCAAATCAGTGCTGGCATGAC 59.186 47.619 0.00 0.00 0.00 3.06
3215 6950 4.702131 AGACTGCATTTGGAGGTTATGTTC 59.298 41.667 4.07 0.00 37.85 3.18
3223 6958 1.542915 CAACCAGACTGCATTTGGAGG 59.457 52.381 15.71 3.91 37.85 4.30
3256 6991 3.327757 AGACCAGACAAGCATGGAAGTTA 59.672 43.478 0.00 0.00 39.02 2.24
3393 7129 7.181485 ACCTAGCAATAACCTTTCTTACCTACA 59.819 37.037 0.00 0.00 0.00 2.74
3425 7167 3.318839 ACAGCTATGTTGAAAAAGCAGCA 59.681 39.130 0.00 0.00 35.63 4.41
3426 7168 3.905784 ACAGCTATGTTGAAAAAGCAGC 58.094 40.909 0.00 0.00 35.63 5.25
3439 7181 7.228108 ACATCATGAGAACCATTAACAGCTATG 59.772 37.037 0.09 0.00 31.94 2.23
3489 7317 6.072838 AGCATGTACTGTTTCATTTCACAGAG 60.073 38.462 6.32 0.00 42.74 3.35
3528 7363 5.133221 CCTGGTCAAAAAGAAAGGAGAGAA 58.867 41.667 0.00 0.00 35.35 2.87
3570 7405 2.351336 CTACTCATCCCGCCCGACAC 62.351 65.000 0.00 0.00 0.00 3.67
3614 7449 4.024048 ACAGCTAGGTTCAATCAACAAACG 60.024 41.667 0.00 0.00 36.61 3.60
3640 7475 2.036475 AGTGGCGATATCATCAGACACC 59.964 50.000 9.85 0.00 40.34 4.16
3688 7523 0.893727 AAATTCACGAGGGGGCACAC 60.894 55.000 0.00 0.00 0.00 3.82
3735 7572 2.871182 TATCATCAGACCGCAGTCAC 57.129 50.000 2.32 0.00 46.15 3.67
3777 7614 2.825861 TAAAACCTCACGACAGACCC 57.174 50.000 0.00 0.00 0.00 4.46
3782 7624 3.659786 CCAGACATAAAACCTCACGACA 58.340 45.455 0.00 0.00 0.00 4.35
3786 7628 6.509418 TTATTGCCAGACATAAAACCTCAC 57.491 37.500 0.00 0.00 0.00 3.51
3871 7713 0.881118 CCAAACCACCACCAAGATCG 59.119 55.000 0.00 0.00 0.00 3.69
3877 7722 1.685491 GGTACAACCAAACCACCACCA 60.685 52.381 0.00 0.00 38.42 4.17
3878 7723 1.034356 GGTACAACCAAACCACCACC 58.966 55.000 0.00 0.00 38.42 4.61


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.