Multiple sequence alignment - TraesCS5B01G524300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G524300 chr5B 100.000 4984 0 0 1 4984 684766768 684761785 0.000000e+00 9204.0
1 TraesCS5B01G524300 chr5B 93.297 2029 105 16 2240 4247 556971831 556973849 0.000000e+00 2964.0
2 TraesCS5B01G524300 chr5B 92.684 1613 64 13 2169 3778 684749894 684751455 0.000000e+00 2276.0
3 TraesCS5B01G524300 chr5B 99.677 619 2 0 1559 2177 684748989 684749607 0.000000e+00 1133.0
4 TraesCS5B01G524300 chr5B 87.789 606 26 10 1591 2174 556971241 556971820 0.000000e+00 665.0
5 TraesCS5B01G524300 chr5B 74.752 1109 251 20 2599 3697 557254048 557252959 2.100000e-128 470.0
6 TraesCS5B01G524300 chr5B 73.463 1334 291 54 2586 3892 684604660 684605957 1.270000e-120 444.0
7 TraesCS5B01G524300 chr5B 93.659 205 13 0 4683 4887 684751539 684751743 1.740000e-79 307.0
8 TraesCS5B01G524300 chr5B 90.991 222 12 3 1322 1542 660193359 660193145 4.880000e-75 292.0
9 TraesCS5B01G524300 chr5B 77.686 484 102 6 2586 3066 557350336 557350816 1.760000e-74 291.0
10 TraesCS5B01G524300 chr5B 93.023 86 6 0 4886 4971 684751925 684752010 5.240000e-25 126.0
11 TraesCS5B01G524300 chr5B 82.418 91 14 1 1233 1321 55343213 55343303 1.490000e-10 78.7
12 TraesCS5B01G524300 chr5B 91.228 57 5 0 4629 4685 684751452 684751508 1.490000e-10 78.7
13 TraesCS5B01G524300 chr5B 97.222 36 1 0 71 106 473289233 473289268 1.500000e-05 62.1
14 TraesCS5B01G524300 chr5D 92.222 2867 152 34 1591 4413 543297559 543300398 0.000000e+00 3993.0
15 TraesCS5B01G524300 chr5D 73.713 1301 295 34 2586 3866 543223953 543225226 9.770000e-127 464.0
16 TraesCS5B01G524300 chr5D 86.592 179 23 1 4484 4662 543303573 543303750 3.940000e-46 196.0
17 TraesCS5B01G524300 chr5D 85.882 85 12 0 1233 1317 367406206 367406290 1.910000e-14 91.6
18 TraesCS5B01G524300 chr5D 87.671 73 9 0 1248 1320 445387978 445387906 8.890000e-13 86.1
19 TraesCS5B01G524300 chr5D 92.593 54 3 1 1540 1592 543297531 543297584 5.350000e-10 76.8
20 TraesCS5B01G524300 chr5D 95.556 45 2 0 4413 4457 264896433 264896389 6.920000e-09 73.1
21 TraesCS5B01G524300 chr4A 92.056 2014 131 17 2258 4247 625921952 625919944 0.000000e+00 2806.0
22 TraesCS5B01G524300 chr4A 75.156 1119 254 19 2599 3708 695981507 695980404 5.760000e-139 505.0
23 TraesCS5B01G524300 chr4A 82.381 210 23 4 4453 4662 625922751 625922556 2.390000e-38 171.0
24 TraesCS5B01G524300 chr4A 85.256 156 22 1 4507 4662 625914487 625914333 5.160000e-35 159.0
25 TraesCS5B01G524300 chr4A 95.349 43 2 0 4412 4454 596473139 596473181 8.950000e-08 69.4
26 TraesCS5B01G524300 chr4B 96.197 1236 22 7 1 1233 545447523 545446310 0.000000e+00 1999.0
27 TraesCS5B01G524300 chr4B 94.279 1241 49 10 1 1233 624429255 624428029 0.000000e+00 1879.0
28 TraesCS5B01G524300 chr4B 92.574 202 12 3 1344 1544 32260274 32260473 2.270000e-73 287.0
29 TraesCS5B01G524300 chr4B 97.778 90 1 1 1236 1325 545441769 545441681 2.400000e-33 154.0
30 TraesCS5B01G524300 chr4B 93.023 86 6 0 1236 1321 624424185 624424100 5.240000e-25 126.0
31 TraesCS5B01G524300 chr4B 97.222 36 1 0 71 106 636796580 636796615 1.500000e-05 62.1
32 TraesCS5B01G524300 chr7B 88.889 531 33 6 96 607 481945562 481946085 9.110000e-177 630.0
33 TraesCS5B01G524300 chr7B 90.845 426 22 7 794 1213 481946972 481947386 5.640000e-154 555.0
34 TraesCS5B01G524300 chr7B 92.784 194 13 1 608 801 481946367 481946559 3.800000e-71 279.0
35 TraesCS5B01G524300 chr7B 91.071 112 10 0 1 112 481945119 481945230 8.640000e-33 152.0
36 TraesCS5B01G524300 chr3B 97.738 221 4 1 1321 1540 661190748 661190528 3.640000e-101 379.0
37 TraesCS5B01G524300 chr3B 97.727 220 4 1 1321 1539 661161763 661161544 1.310000e-100 377.0
38 TraesCS5B01G524300 chr3B 95.413 218 7 3 1323 1539 31795415 31795200 1.330000e-90 344.0
39 TraesCS5B01G524300 chr3B 82.895 152 26 0 1076 1227 648182105 648182256 2.420000e-28 137.0
40 TraesCS5B01G524300 chr6B 97.248 218 4 2 1322 1538 674403814 674404030 7.880000e-98 368.0
41 TraesCS5B01G524300 chr6B 86.047 86 10 2 1236 1320 567103169 567103085 1.910000e-14 91.6
42 TraesCS5B01G524300 chr1B 96.833 221 6 1 1321 1540 327563257 327563477 7.880000e-98 368.0
43 TraesCS5B01G524300 chr1B 95.349 43 2 0 4415 4457 623897253 623897211 8.950000e-08 69.4
44 TraesCS5B01G524300 chr1B 97.222 36 1 0 71 106 532398799 532398764 1.500000e-05 62.1
45 TraesCS5B01G524300 chr1B 100.000 30 0 0 1613 1642 331603227 331603198 6.970000e-04 56.5
46 TraesCS5B01G524300 chr2B 95.909 220 8 1 1322 1541 541898809 541899027 6.140000e-94 355.0
47 TraesCS5B01G524300 chr2B 87.624 202 20 3 1340 1540 752398001 752398198 3.880000e-56 230.0
48 TraesCS5B01G524300 chr2B 84.375 96 12 3 1233 1327 676686399 676686492 1.910000e-14 91.6
49 TraesCS5B01G524300 chr5A 91.700 253 18 3 173 422 601639311 601639563 1.030000e-91 348.0
50 TraesCS5B01G524300 chr5A 92.800 125 9 0 1 125 601638191 601638315 1.100000e-41 182.0
51 TraesCS5B01G524300 chr5A 83.133 83 12 2 1236 1317 293506229 293506310 1.920000e-09 75.0
52 TraesCS5B01G524300 chrUn 82.520 246 25 10 826 1070 147987936 147988164 3.040000e-47 200.0
53 TraesCS5B01G524300 chrUn 82.520 246 25 10 826 1070 234504283 234504055 3.040000e-47 200.0
54 TraesCS5B01G524300 chrUn 82.114 246 26 10 826 1070 147992226 147992454 1.420000e-45 195.0
55 TraesCS5B01G524300 chrUn 80.488 246 30 11 826 1070 148078108 148078336 6.630000e-39 172.0
56 TraesCS5B01G524300 chr6D 82.114 246 26 10 826 1070 5715944 5716172 1.420000e-45 195.0
57 TraesCS5B01G524300 chr6D 82.114 246 26 10 826 1070 5717374 5717602 1.420000e-45 195.0
58 TraesCS5B01G524300 chr6D 88.506 87 8 2 1236 1321 23780956 23781041 2.450000e-18 104.0
59 TraesCS5B01G524300 chr1A 86.111 108 13 2 4543 4650 545031077 545031182 1.130000e-21 115.0
60 TraesCS5B01G524300 chr7D 97.561 41 1 0 4413 4453 613233978 613234018 2.490000e-08 71.3
61 TraesCS5B01G524300 chr7A 97.561 41 1 0 4413 4453 478141244 478141284 2.490000e-08 71.3
62 TraesCS5B01G524300 chr7A 91.489 47 4 0 4407 4453 38137319 38137273 1.160000e-06 65.8
63 TraesCS5B01G524300 chr7A 96.970 33 1 0 74 106 323740214 323740182 6.970000e-04 56.5
64 TraesCS5B01G524300 chr1D 97.561 41 1 0 4413 4453 482518479 482518439 2.490000e-08 71.3
65 TraesCS5B01G524300 chr6A 93.333 45 3 0 4413 4457 3314583 3314627 3.220000e-07 67.6
66 TraesCS5B01G524300 chr3D 93.333 45 3 0 4413 4457 445754239 445754195 3.220000e-07 67.6
67 TraesCS5B01G524300 chr2A 97.222 36 1 0 71 106 343422354 343422319 1.500000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G524300 chr5B 684761785 684766768 4983 True 9204.000000 9204 100.00000 1 4984 1 chr5B.!!$R3 4983
1 TraesCS5B01G524300 chr5B 556971241 556973849 2608 False 1814.500000 2964 90.54300 1591 4247 2 chr5B.!!$F5 2656
2 TraesCS5B01G524300 chr5B 684748989 684752010 3021 False 784.140000 2276 94.05420 1559 4971 5 chr5B.!!$F6 3412
3 TraesCS5B01G524300 chr5B 557252959 557254048 1089 True 470.000000 470 74.75200 2599 3697 1 chr5B.!!$R1 1098
4 TraesCS5B01G524300 chr5B 684604660 684605957 1297 False 444.000000 444 73.46300 2586 3892 1 chr5B.!!$F4 1306
5 TraesCS5B01G524300 chr5D 543297531 543303750 6219 False 1421.933333 3993 90.46900 1540 4662 3 chr5D.!!$F3 3122
6 TraesCS5B01G524300 chr5D 543223953 543225226 1273 False 464.000000 464 73.71300 2586 3866 1 chr5D.!!$F2 1280
7 TraesCS5B01G524300 chr4A 625919944 625922751 2807 True 1488.500000 2806 87.21850 2258 4662 2 chr4A.!!$R3 2404
8 TraesCS5B01G524300 chr4A 695980404 695981507 1103 True 505.000000 505 75.15600 2599 3708 1 chr4A.!!$R2 1109
9 TraesCS5B01G524300 chr4B 545446310 545447523 1213 True 1999.000000 1999 96.19700 1 1233 1 chr4B.!!$R2 1232
10 TraesCS5B01G524300 chr4B 624424100 624429255 5155 True 1002.500000 1879 93.65100 1 1321 2 chr4B.!!$R3 1320
11 TraesCS5B01G524300 chr7B 481945119 481947386 2267 False 404.000000 630 90.89725 1 1213 4 chr7B.!!$F1 1212
12 TraesCS5B01G524300 chr5A 601638191 601639563 1372 False 265.000000 348 92.25000 1 422 2 chr5A.!!$F2 421

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
410 1707 4.359434 TTGTTCTGCTGGTTACCATACA 57.641 40.909 3.88 5.8 30.82 2.29 F
1322 7192 0.316841 ACCATTGGCATTTTTCGCGT 59.683 45.000 5.77 0.0 0.00 6.01 F
1472 7342 0.178981 AGCAAACTCCACCACTGCAT 60.179 50.000 0.00 0.0 35.44 3.96 F
1533 7403 0.737367 GCAAAATTTCCTGGCTCCGC 60.737 55.000 0.00 0.0 0.00 5.54 F
2912 9115 0.599728 GAGCTAGATGGCTTGGAGCG 60.600 60.000 0.00 0.0 43.62 5.03 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1453 7323 0.178981 ATGCAGTGGTGGAGTTTGCT 60.179 50.0 0.00 0.00 35.85 3.91 R
2192 8384 0.476771 AGGGTCGGGCAAAGAAAGAA 59.523 50.0 0.00 0.00 0.00 2.52 R
2912 9115 1.006832 CACGATCAACCCGTCATTCC 58.993 55.0 0.00 0.00 38.29 3.01 R
3259 9474 1.198759 AGCTTCTGCCCCGTCCTTAA 61.199 55.0 0.00 0.00 40.80 1.85 R
4909 14496 0.103208 CAGTGTATCGGAGTGGCTCC 59.897 60.0 5.15 5.15 46.44 4.70 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
341 1638 6.522510 CGCTCAAATCAGATTTCAGAAAGAAC 59.477 38.462 10.80 0.00 35.56 3.01
408 1705 5.235850 TCTTTGTTCTGCTGGTTACCATA 57.764 39.130 3.88 0.00 30.82 2.74
409 1706 5.001232 TCTTTGTTCTGCTGGTTACCATAC 58.999 41.667 3.88 0.62 30.82 2.39
410 1707 4.359434 TTGTTCTGCTGGTTACCATACA 57.641 40.909 3.88 5.80 30.82 2.29
980 3007 6.428159 GGTTTCATTGAGACTTTGAGAGCTAA 59.572 38.462 7.22 0.00 0.00 3.09
1072 3100 2.401583 ACAAAGCTGGTGCATATCGA 57.598 45.000 0.00 0.00 42.74 3.59
1108 3137 4.426313 CCCGCCCCCAAAGAGGTC 62.426 72.222 0.00 0.00 34.66 3.85
1143 3172 2.896685 TCCAAGGAAATTGCCGAAATGT 59.103 40.909 0.00 0.00 37.60 2.71
1178 3207 0.796312 GTTGGACATCGTCGCAATGT 59.204 50.000 0.00 0.00 39.99 2.71
1233 3262 5.354513 GCCAAACTTCCTCTAGTTACAATCC 59.645 44.000 0.00 0.00 37.37 3.01
1234 3263 6.472887 CCAAACTTCCTCTAGTTACAATCCA 58.527 40.000 0.00 0.00 37.37 3.41
1235 3264 6.940298 CCAAACTTCCTCTAGTTACAATCCAA 59.060 38.462 0.00 0.00 37.37 3.53
1236 3265 7.611855 CCAAACTTCCTCTAGTTACAATCCAAT 59.388 37.037 0.00 0.00 37.37 3.16
1237 3266 9.667107 CAAACTTCCTCTAGTTACAATCCAATA 57.333 33.333 0.00 0.00 37.37 1.90
1238 3267 9.668497 AAACTTCCTCTAGTTACAATCCAATAC 57.332 33.333 0.00 0.00 37.37 1.89
1239 3268 8.375493 ACTTCCTCTAGTTACAATCCAATACA 57.625 34.615 0.00 0.00 0.00 2.29
1240 3269 8.258708 ACTTCCTCTAGTTACAATCCAATACAC 58.741 37.037 0.00 0.00 0.00 2.90
1290 7160 4.883354 CAGGGATTCCGGCCTGCC 62.883 72.222 12.24 8.95 38.33 4.85
1292 7162 4.883354 GGGATTCCGGCCTGCCTG 62.883 72.222 6.60 0.00 0.00 4.85
1295 7165 1.227674 GATTCCGGCCTGCCTGTAG 60.228 63.158 6.60 0.00 0.00 2.74
1321 7191 0.714994 CACCATTGGCATTTTTCGCG 59.285 50.000 0.00 0.00 0.00 5.87
1322 7192 0.316841 ACCATTGGCATTTTTCGCGT 59.683 45.000 5.77 0.00 0.00 6.01
1323 7193 1.542030 ACCATTGGCATTTTTCGCGTA 59.458 42.857 5.77 0.00 0.00 4.42
1324 7194 2.165437 ACCATTGGCATTTTTCGCGTAT 59.835 40.909 5.77 0.00 0.00 3.06
1325 7195 3.186119 CCATTGGCATTTTTCGCGTATT 58.814 40.909 5.77 0.00 0.00 1.89
1326 7196 3.616379 CCATTGGCATTTTTCGCGTATTT 59.384 39.130 5.77 0.00 0.00 1.40
1327 7197 4.492247 CCATTGGCATTTTTCGCGTATTTG 60.492 41.667 5.77 0.04 0.00 2.32
1328 7198 1.989165 TGGCATTTTTCGCGTATTTGC 59.011 42.857 5.77 10.39 0.00 3.68
1329 7199 2.258755 GGCATTTTTCGCGTATTTGCT 58.741 42.857 5.77 0.00 0.00 3.91
1330 7200 2.666022 GGCATTTTTCGCGTATTTGCTT 59.334 40.909 5.77 0.00 0.00 3.91
1331 7201 3.481789 GGCATTTTTCGCGTATTTGCTTG 60.482 43.478 5.77 0.00 0.00 4.01
1332 7202 3.363426 GCATTTTTCGCGTATTTGCTTGA 59.637 39.130 5.77 0.00 0.00 3.02
1333 7203 4.718168 GCATTTTTCGCGTATTTGCTTGAC 60.718 41.667 5.77 0.00 0.00 3.18
1334 7204 3.889196 TTTTCGCGTATTTGCTTGACT 57.111 38.095 5.77 0.00 0.00 3.41
1335 7205 3.889196 TTTCGCGTATTTGCTTGACTT 57.111 38.095 5.77 0.00 0.00 3.01
1336 7206 3.889196 TTCGCGTATTTGCTTGACTTT 57.111 38.095 5.77 0.00 0.00 2.66
1337 7207 4.994220 TTCGCGTATTTGCTTGACTTTA 57.006 36.364 5.77 0.00 0.00 1.85
1338 7208 4.994220 TCGCGTATTTGCTTGACTTTAA 57.006 36.364 5.77 0.00 0.00 1.52
1339 7209 4.704457 TCGCGTATTTGCTTGACTTTAAC 58.296 39.130 5.77 0.00 0.00 2.01
1340 7210 3.844099 CGCGTATTTGCTTGACTTTAACC 59.156 43.478 0.00 0.00 0.00 2.85
1341 7211 4.163552 GCGTATTTGCTTGACTTTAACCC 58.836 43.478 0.00 0.00 0.00 4.11
1342 7212 4.320641 GCGTATTTGCTTGACTTTAACCCA 60.321 41.667 0.00 0.00 0.00 4.51
1343 7213 5.764131 CGTATTTGCTTGACTTTAACCCAA 58.236 37.500 0.00 0.00 0.00 4.12
1344 7214 6.386654 CGTATTTGCTTGACTTTAACCCAAT 58.613 36.000 0.00 0.00 0.00 3.16
1345 7215 7.531716 CGTATTTGCTTGACTTTAACCCAATA 58.468 34.615 0.00 0.00 0.00 1.90
1346 7216 7.696453 CGTATTTGCTTGACTTTAACCCAATAG 59.304 37.037 0.00 0.00 0.00 1.73
1347 7217 7.775053 ATTTGCTTGACTTTAACCCAATAGA 57.225 32.000 0.00 0.00 0.00 1.98
1348 7218 7.589958 TTTGCTTGACTTTAACCCAATAGAA 57.410 32.000 0.00 0.00 0.00 2.10
1349 7219 7.589958 TTGCTTGACTTTAACCCAATAGAAA 57.410 32.000 0.00 0.00 0.00 2.52
1350 7220 7.214467 TGCTTGACTTTAACCCAATAGAAAG 57.786 36.000 0.00 0.00 35.48 2.62
1351 7221 6.775629 TGCTTGACTTTAACCCAATAGAAAGT 59.224 34.615 0.00 0.00 43.11 2.66
1361 7231 9.886132 TTAACCCAATAGAAAGTCTAGAATGAC 57.114 33.333 0.00 0.00 31.67 3.06
1362 7232 6.890293 ACCCAATAGAAAGTCTAGAATGACC 58.110 40.000 0.00 0.00 37.66 4.02
1363 7233 6.126739 ACCCAATAGAAAGTCTAGAATGACCC 60.127 42.308 0.00 0.00 37.66 4.46
1364 7234 6.292150 CCAATAGAAAGTCTAGAATGACCCC 58.708 44.000 0.00 0.00 37.66 4.95
1365 7235 6.126768 CCAATAGAAAGTCTAGAATGACCCCA 60.127 42.308 0.00 0.00 37.66 4.96
1366 7236 7.420680 CCAATAGAAAGTCTAGAATGACCCCAT 60.421 40.741 0.00 0.00 37.66 4.00
1367 7237 5.622346 AGAAAGTCTAGAATGACCCCATC 57.378 43.478 0.00 0.00 37.66 3.51
1368 7238 4.100189 AGAAAGTCTAGAATGACCCCATCG 59.900 45.833 0.00 0.00 37.66 3.84
1369 7239 3.314307 AGTCTAGAATGACCCCATCGA 57.686 47.619 0.00 0.00 37.66 3.59
1370 7240 3.643237 AGTCTAGAATGACCCCATCGAA 58.357 45.455 0.00 0.00 37.66 3.71
1371 7241 4.227197 AGTCTAGAATGACCCCATCGAAT 58.773 43.478 0.00 0.00 37.66 3.34
1372 7242 5.394738 AGTCTAGAATGACCCCATCGAATA 58.605 41.667 0.00 0.00 37.66 1.75
1373 7243 5.839063 AGTCTAGAATGACCCCATCGAATAA 59.161 40.000 0.00 0.00 37.66 1.40
1374 7244 6.498651 AGTCTAGAATGACCCCATCGAATAAT 59.501 38.462 0.00 0.00 37.66 1.28
1375 7245 6.591834 GTCTAGAATGACCCCATCGAATAATG 59.408 42.308 0.00 0.00 31.40 1.90
1376 7246 5.310409 AGAATGACCCCATCGAATAATGT 57.690 39.130 0.00 0.00 31.40 2.71
1377 7247 5.694995 AGAATGACCCCATCGAATAATGTT 58.305 37.500 0.00 0.00 31.40 2.71
1378 7248 6.837312 AGAATGACCCCATCGAATAATGTTA 58.163 36.000 0.00 0.00 31.40 2.41
1379 7249 7.461749 AGAATGACCCCATCGAATAATGTTAT 58.538 34.615 0.00 0.00 31.40 1.89
1380 7250 7.391554 AGAATGACCCCATCGAATAATGTTATG 59.608 37.037 0.00 0.00 31.40 1.90
1381 7251 6.181206 TGACCCCATCGAATAATGTTATGA 57.819 37.500 0.00 0.00 0.00 2.15
1382 7252 6.230472 TGACCCCATCGAATAATGTTATGAG 58.770 40.000 0.00 0.00 0.00 2.90
1383 7253 5.560724 ACCCCATCGAATAATGTTATGAGG 58.439 41.667 0.00 0.00 0.00 3.86
1384 7254 4.943705 CCCCATCGAATAATGTTATGAGGG 59.056 45.833 0.00 0.00 0.00 4.30
1385 7255 4.943705 CCCATCGAATAATGTTATGAGGGG 59.056 45.833 7.84 7.84 0.00 4.79
1386 7256 4.943705 CCATCGAATAATGTTATGAGGGGG 59.056 45.833 0.00 0.00 0.00 5.40
1411 7281 2.607442 GCATTGGCCCCCAACCTT 60.607 61.111 0.00 0.00 46.95 3.50
1412 7282 2.958281 GCATTGGCCCCCAACCTTG 61.958 63.158 0.00 0.00 46.95 3.61
1413 7283 2.122504 ATTGGCCCCCAACCTTGG 59.877 61.111 0.00 0.00 46.95 3.61
1446 7316 5.906113 TTTTTGGCGAGCTTATATTGGAA 57.094 34.783 0.00 0.00 0.00 3.53
1447 7317 5.906113 TTTTGGCGAGCTTATATTGGAAA 57.094 34.783 0.00 0.00 0.00 3.13
1448 7318 6.463995 TTTTGGCGAGCTTATATTGGAAAT 57.536 33.333 0.00 0.00 0.00 2.17
1449 7319 6.463995 TTTGGCGAGCTTATATTGGAAATT 57.536 33.333 0.00 0.00 0.00 1.82
1450 7320 6.463995 TTGGCGAGCTTATATTGGAAATTT 57.536 33.333 0.00 0.00 0.00 1.82
1451 7321 6.072112 TGGCGAGCTTATATTGGAAATTTC 57.928 37.500 9.83 9.83 0.00 2.17
1464 7334 3.653344 GGAAATTTCCAGCAAACTCCAC 58.347 45.455 28.76 0.00 46.76 4.02
1465 7335 3.554960 GGAAATTTCCAGCAAACTCCACC 60.555 47.826 28.76 0.00 46.76 4.61
1466 7336 2.380064 ATTTCCAGCAAACTCCACCA 57.620 45.000 0.00 0.00 0.00 4.17
1467 7337 1.398692 TTTCCAGCAAACTCCACCAC 58.601 50.000 0.00 0.00 0.00 4.16
1468 7338 0.550914 TTCCAGCAAACTCCACCACT 59.449 50.000 0.00 0.00 0.00 4.00
1469 7339 0.179020 TCCAGCAAACTCCACCACTG 60.179 55.000 0.00 0.00 0.00 3.66
1470 7340 1.656441 CAGCAAACTCCACCACTGC 59.344 57.895 0.00 0.00 0.00 4.40
1471 7341 1.102809 CAGCAAACTCCACCACTGCA 61.103 55.000 0.00 0.00 35.44 4.41
1472 7342 0.178981 AGCAAACTCCACCACTGCAT 60.179 50.000 0.00 0.00 35.44 3.96
1473 7343 1.073763 AGCAAACTCCACCACTGCATA 59.926 47.619 0.00 0.00 35.44 3.14
1474 7344 1.200020 GCAAACTCCACCACTGCATAC 59.800 52.381 0.00 0.00 33.19 2.39
1475 7345 2.503331 CAAACTCCACCACTGCATACA 58.497 47.619 0.00 0.00 0.00 2.29
1476 7346 2.884012 CAAACTCCACCACTGCATACAA 59.116 45.455 0.00 0.00 0.00 2.41
1477 7347 3.439857 AACTCCACCACTGCATACAAT 57.560 42.857 0.00 0.00 0.00 2.71
1478 7348 4.568072 AACTCCACCACTGCATACAATA 57.432 40.909 0.00 0.00 0.00 1.90
1479 7349 4.142609 ACTCCACCACTGCATACAATAG 57.857 45.455 0.00 0.00 0.00 1.73
1480 7350 3.519510 ACTCCACCACTGCATACAATAGT 59.480 43.478 0.00 0.00 0.00 2.12
1481 7351 4.019321 ACTCCACCACTGCATACAATAGTT 60.019 41.667 0.00 0.00 0.00 2.24
1482 7352 5.188948 ACTCCACCACTGCATACAATAGTTA 59.811 40.000 0.00 0.00 0.00 2.24
1483 7353 6.056090 TCCACCACTGCATACAATAGTTAA 57.944 37.500 0.00 0.00 0.00 2.01
1484 7354 6.658849 TCCACCACTGCATACAATAGTTAAT 58.341 36.000 0.00 0.00 0.00 1.40
1485 7355 7.116075 TCCACCACTGCATACAATAGTTAATT 58.884 34.615 0.00 0.00 0.00 1.40
1486 7356 7.282224 TCCACCACTGCATACAATAGTTAATTC 59.718 37.037 0.00 0.00 0.00 2.17
1487 7357 7.066887 CCACCACTGCATACAATAGTTAATTCA 59.933 37.037 0.00 0.00 0.00 2.57
1488 7358 8.623903 CACCACTGCATACAATAGTTAATTCAT 58.376 33.333 0.00 0.00 0.00 2.57
1489 7359 9.845740 ACCACTGCATACAATAGTTAATTCATA 57.154 29.630 0.00 0.00 0.00 2.15
1499 7369 9.975218 ACAATAGTTAATTCATACTCAAACCCT 57.025 29.630 0.00 0.00 0.00 4.34
1503 7373 8.507524 AGTTAATTCATACTCAAACCCTTAGC 57.492 34.615 0.00 0.00 0.00 3.09
1504 7374 7.280205 AGTTAATTCATACTCAAACCCTTAGCG 59.720 37.037 0.00 0.00 0.00 4.26
1505 7375 4.811969 TTCATACTCAAACCCTTAGCGA 57.188 40.909 0.00 0.00 0.00 4.93
1506 7376 4.811969 TCATACTCAAACCCTTAGCGAA 57.188 40.909 0.00 0.00 0.00 4.70
1507 7377 4.501071 TCATACTCAAACCCTTAGCGAAC 58.499 43.478 0.00 0.00 0.00 3.95
1508 7378 2.180432 ACTCAAACCCTTAGCGAACC 57.820 50.000 0.00 0.00 0.00 3.62
1509 7379 1.271217 ACTCAAACCCTTAGCGAACCC 60.271 52.381 0.00 0.00 0.00 4.11
1510 7380 0.766131 TCAAACCCTTAGCGAACCCA 59.234 50.000 0.00 0.00 0.00 4.51
1511 7381 1.353022 TCAAACCCTTAGCGAACCCAT 59.647 47.619 0.00 0.00 0.00 4.00
1512 7382 2.167662 CAAACCCTTAGCGAACCCATT 58.832 47.619 0.00 0.00 0.00 3.16
1513 7383 3.009253 TCAAACCCTTAGCGAACCCATTA 59.991 43.478 0.00 0.00 0.00 1.90
1514 7384 3.277142 AACCCTTAGCGAACCCATTAG 57.723 47.619 0.00 0.00 0.00 1.73
1515 7385 1.134189 ACCCTTAGCGAACCCATTAGC 60.134 52.381 0.00 0.00 36.75 3.09
1516 7386 1.134220 CCCTTAGCGAACCCATTAGCA 60.134 52.381 0.00 0.00 38.79 3.49
1517 7387 2.639065 CCTTAGCGAACCCATTAGCAA 58.361 47.619 0.00 0.00 38.79 3.91
1518 7388 3.013921 CCTTAGCGAACCCATTAGCAAA 58.986 45.455 0.00 0.00 38.79 3.68
1519 7389 3.442273 CCTTAGCGAACCCATTAGCAAAA 59.558 43.478 0.00 0.00 38.79 2.44
1520 7390 4.097892 CCTTAGCGAACCCATTAGCAAAAT 59.902 41.667 0.00 0.00 38.79 1.82
1521 7391 5.394115 CCTTAGCGAACCCATTAGCAAAATT 60.394 40.000 0.00 0.00 38.79 1.82
1522 7392 4.535526 AGCGAACCCATTAGCAAAATTT 57.464 36.364 0.00 0.00 38.79 1.82
1523 7393 4.494484 AGCGAACCCATTAGCAAAATTTC 58.506 39.130 0.00 0.00 38.79 2.17
1524 7394 3.616821 GCGAACCCATTAGCAAAATTTCC 59.383 43.478 0.00 0.00 36.53 3.13
1525 7395 4.620567 GCGAACCCATTAGCAAAATTTCCT 60.621 41.667 0.00 0.00 36.53 3.36
1526 7396 4.864247 CGAACCCATTAGCAAAATTTCCTG 59.136 41.667 0.00 0.00 0.00 3.86
1527 7397 4.824479 ACCCATTAGCAAAATTTCCTGG 57.176 40.909 0.00 0.00 0.00 4.45
1528 7398 3.055167 ACCCATTAGCAAAATTTCCTGGC 60.055 43.478 0.00 0.00 0.00 4.85
1529 7399 3.198417 CCCATTAGCAAAATTTCCTGGCT 59.802 43.478 10.24 10.24 38.55 4.75
1530 7400 4.436332 CCATTAGCAAAATTTCCTGGCTC 58.564 43.478 9.10 0.00 36.10 4.70
1531 7401 4.436332 CATTAGCAAAATTTCCTGGCTCC 58.564 43.478 9.10 0.00 36.10 4.70
1532 7402 0.890683 AGCAAAATTTCCTGGCTCCG 59.109 50.000 0.00 0.00 0.00 4.63
1533 7403 0.737367 GCAAAATTTCCTGGCTCCGC 60.737 55.000 0.00 0.00 0.00 5.54
1998 7892 1.312371 AATGCCATGCCGCTTTACGT 61.312 50.000 0.00 0.00 41.42 3.57
2188 8380 6.952605 ACAGGTGCAGGTATATATATGGTT 57.047 37.500 5.44 0.00 0.00 3.67
2192 8384 6.012508 AGGTGCAGGTATATATATGGTTTGCT 60.013 38.462 5.44 0.00 0.00 3.91
2193 8385 6.659242 GGTGCAGGTATATATATGGTTTGCTT 59.341 38.462 5.44 0.00 0.00 3.91
2194 8386 7.148239 GGTGCAGGTATATATATGGTTTGCTTC 60.148 40.741 5.44 7.55 0.00 3.86
2195 8387 7.607991 GTGCAGGTATATATATGGTTTGCTTCT 59.392 37.037 5.44 0.00 0.00 2.85
2222 8414 1.611519 CCCGACCCTTAAACTGCAAA 58.388 50.000 0.00 0.00 0.00 3.68
2268 8460 7.180322 TGCATGAAATATTTATGTGGTGGTT 57.820 32.000 0.00 0.00 0.00 3.67
2329 8524 9.793259 TCCTGTTTTTGAATTAGACAGTTATCT 57.207 29.630 0.00 0.00 36.79 1.98
2372 8571 6.098017 AGTTTCTTTCTGTATACGTAGGTGC 58.902 40.000 0.08 0.00 0.00 5.01
2626 8829 1.151668 CAAGCTTCCAAGAGGTGTCG 58.848 55.000 0.00 0.00 35.89 4.35
2912 9115 0.599728 GAGCTAGATGGCTTGGAGCG 60.600 60.000 0.00 0.00 43.62 5.03
2923 9126 2.521958 CTTGGAGCGGAATGACGGGT 62.522 60.000 0.00 0.00 0.00 5.28
3308 9526 1.210234 CATCACCTGGAGTATGCCACA 59.790 52.381 0.00 0.00 33.52 4.17
3325 9543 3.099905 CCACAGACAGGATTCTAGTGGA 58.900 50.000 0.00 0.00 41.99 4.02
3453 9671 2.890945 GTCCACAAGGCTACCATTGTTT 59.109 45.455 0.00 0.00 37.54 2.83
3794 10018 4.026356 AGAGTTGTTGAGCAAGGCTTAT 57.974 40.909 0.00 0.00 39.88 1.73
3809 10033 2.742053 GGCTTATGAGAACGCAAAGACA 59.258 45.455 0.00 0.00 0.00 3.41
3815 10039 4.265904 TGAGAACGCAAAGACAATCCTA 57.734 40.909 0.00 0.00 0.00 2.94
3875 10099 2.575993 CTGGAGCACGAGACCCTG 59.424 66.667 0.00 0.00 0.00 4.45
3938 10170 1.813753 CCGTGAAACCGGCATCGAT 60.814 57.895 0.00 0.00 41.78 3.59
3976 10211 9.449719 GGAAGAAGAAGTAAATGAATGGTCTAA 57.550 33.333 0.00 0.00 0.00 2.10
3981 10216 7.565680 AGAAGTAAATGAATGGTCTAATCGGT 58.434 34.615 0.00 0.00 0.00 4.69
3998 10237 2.821378 TCGGTAGAATCAGGAAACACGA 59.179 45.455 0.00 0.00 0.00 4.35
4016 10255 3.927142 CACGACCTTCTTCATCCTAACAC 59.073 47.826 0.00 0.00 0.00 3.32
4019 10258 4.865365 CGACCTTCTTCATCCTAACACTTC 59.135 45.833 0.00 0.00 0.00 3.01
4020 10259 4.822026 ACCTTCTTCATCCTAACACTTCG 58.178 43.478 0.00 0.00 0.00 3.79
4023 10262 4.720649 TCTTCATCCTAACACTTCGGAG 57.279 45.455 0.00 0.00 0.00 4.63
4026 10265 3.698289 TCATCCTAACACTTCGGAGACT 58.302 45.455 0.00 0.00 34.32 3.24
4031 10270 4.019501 TCCTAACACTTCGGAGACTAGACT 60.020 45.833 0.00 0.00 34.32 3.24
4041 10280 6.645790 TCGGAGACTAGACTAACAGTTTTT 57.354 37.500 0.00 0.00 0.00 1.94
4064 10303 7.951530 TTTCCTTGCAATGATTTTCTTCTTC 57.048 32.000 5.20 0.00 0.00 2.87
4094 10334 9.579768 TGGTTCATTATTTGTTGCATATAACAC 57.420 29.630 0.00 0.00 40.04 3.32
4148 10389 4.788617 TGGCCTTTTCTCCTTTCCTACTAT 59.211 41.667 3.32 0.00 0.00 2.12
4159 10402 9.661954 TCTCCTTTCCTACTATAGAATGTGATT 57.338 33.333 6.78 0.00 0.00 2.57
4203 10447 8.573035 TGTTTCAAACCAGTATTTCTATTGGTC 58.427 33.333 0.00 0.00 44.66 4.02
4218 10462 2.979649 GTCGGAACCCTCCTGACC 59.020 66.667 0.00 0.00 39.93 4.02
4224 10468 1.617322 GAACCCTCCTGACCAAAACC 58.383 55.000 0.00 0.00 0.00 3.27
4225 10469 1.145119 GAACCCTCCTGACCAAAACCT 59.855 52.381 0.00 0.00 0.00 3.50
4242 10486 5.950758 AAACCTTTTTGAAACACAAACCC 57.049 34.783 0.00 0.00 46.32 4.11
4247 10491 4.826274 TTTTGAAACACAAACCCCATCA 57.174 36.364 0.00 0.00 46.32 3.07
4251 10517 3.383185 TGAAACACAAACCCCATCAGTTC 59.617 43.478 0.00 0.00 0.00 3.01
4275 10541 2.691011 TGAACTGGTTGCCCAACTTTAC 59.309 45.455 10.61 0.00 41.27 2.01
4279 10545 2.556622 CTGGTTGCCCAACTTTACGATT 59.443 45.455 10.61 0.00 41.27 3.34
4283 10549 4.321675 GGTTGCCCAACTTTACGATTTCAT 60.322 41.667 10.61 0.00 40.94 2.57
4286 10552 4.520874 TGCCCAACTTTACGATTTCATTGA 59.479 37.500 0.00 0.00 0.00 2.57
4287 10553 4.857037 GCCCAACTTTACGATTTCATTGAC 59.143 41.667 0.00 0.00 0.00 3.18
4288 10554 5.563867 GCCCAACTTTACGATTTCATTGACA 60.564 40.000 0.00 0.00 0.00 3.58
4289 10555 6.086222 CCCAACTTTACGATTTCATTGACAG 58.914 40.000 0.00 0.00 0.00 3.51
4290 10556 6.086222 CCAACTTTACGATTTCATTGACAGG 58.914 40.000 0.00 0.00 0.00 4.00
4292 10558 6.241207 ACTTTACGATTTCATTGACAGGTG 57.759 37.500 0.00 0.00 0.00 4.00
4294 10560 5.605564 TTACGATTTCATTGACAGGTGTG 57.394 39.130 0.00 0.00 0.00 3.82
4295 10561 3.476552 ACGATTTCATTGACAGGTGTGT 58.523 40.909 0.00 0.00 40.71 3.72
4296 10562 3.250762 ACGATTTCATTGACAGGTGTGTG 59.749 43.478 0.00 0.00 36.88 3.82
4297 10563 3.250762 CGATTTCATTGACAGGTGTGTGT 59.749 43.478 0.00 0.00 36.88 3.72
4298 10564 4.539870 GATTTCATTGACAGGTGTGTGTG 58.460 43.478 0.00 0.00 36.88 3.82
4299 10565 2.708216 TCATTGACAGGTGTGTGTGT 57.292 45.000 0.00 0.00 36.88 3.72
4300 10566 2.997980 TCATTGACAGGTGTGTGTGTT 58.002 42.857 0.00 0.00 36.88 3.32
4301 10567 2.682352 TCATTGACAGGTGTGTGTGTTG 59.318 45.455 0.00 0.00 36.88 3.33
4302 10568 0.808125 TTGACAGGTGTGTGTGTTGC 59.192 50.000 0.00 0.00 36.88 4.17
4303 10569 1.029408 TGACAGGTGTGTGTGTTGCC 61.029 55.000 0.00 0.00 36.88 4.52
4317 10583 1.152830 TTGCCCCCTCTGTTCCAAC 59.847 57.895 0.00 0.00 0.00 3.77
4319 10585 1.603739 GCCCCCTCTGTTCCAACAC 60.604 63.158 0.00 0.00 34.70 3.32
4322 10588 0.537371 CCCCTCTGTTCCAACACACC 60.537 60.000 0.00 0.00 34.70 4.16
4336 10602 4.881850 CCAACACACCTCAAGTTCTAAGTT 59.118 41.667 0.00 0.00 0.00 2.66
4338 10604 6.540914 CCAACACACCTCAAGTTCTAAGTTAA 59.459 38.462 0.00 0.00 0.00 2.01
4341 10607 6.985059 ACACACCTCAAGTTCTAAGTTAAGTC 59.015 38.462 0.00 0.00 0.00 3.01
4359 10625 9.067986 AGTTAAGTCCTAAGTCAAATTTCTTGG 57.932 33.333 3.09 0.57 0.00 3.61
4360 10626 9.063615 GTTAAGTCCTAAGTCAAATTTCTTGGA 57.936 33.333 5.02 5.95 0.00 3.53
4361 10627 9.635404 TTAAGTCCTAAGTCAAATTTCTTGGAA 57.365 29.630 5.02 0.00 0.00 3.53
4367 10633 9.341899 CCTAAGTCAAATTTCTTGGAATTTACG 57.658 33.333 5.02 0.00 37.17 3.18
4393 10660 7.849322 ACTTTATAGAAAAATTGGTGGGTGT 57.151 32.000 0.00 0.00 0.00 4.16
4398 10665 4.407365 AGAAAAATTGGTGGGTGTCTAGG 58.593 43.478 0.00 0.00 0.00 3.02
4403 10670 1.079336 GGTGGGTGTCTAGGCGTTC 60.079 63.158 0.00 0.00 0.00 3.95
4413 10680 3.863424 TGTCTAGGCGTTCGATTTCAATC 59.137 43.478 0.00 0.00 0.00 2.67
4424 10691 1.665679 GATTTCAATCGGCTCGCTTCA 59.334 47.619 0.00 0.00 0.00 3.02
4426 10693 0.037326 TTCAATCGGCTCGCTTCAGT 60.037 50.000 0.00 0.00 0.00 3.41
4427 10694 0.737367 TCAATCGGCTCGCTTCAGTG 60.737 55.000 0.00 0.00 0.00 3.66
4429 13376 2.513026 AATCGGCTCGCTTCAGTGCT 62.513 55.000 0.00 0.00 0.00 4.40
4434 13381 0.718343 GCTCGCTTCAGTGCTTGTAG 59.282 55.000 0.00 0.00 0.00 2.74
4438 13385 1.784525 GCTTCAGTGCTTGTAGTCGT 58.215 50.000 0.00 0.00 0.00 4.34
4440 13387 2.096713 GCTTCAGTGCTTGTAGTCGTTG 60.097 50.000 0.00 0.00 0.00 4.10
4447 13394 4.506654 AGTGCTTGTAGTCGTTGTTAGTTG 59.493 41.667 0.00 0.00 0.00 3.16
4448 13395 3.805422 TGCTTGTAGTCGTTGTTAGTTGG 59.195 43.478 0.00 0.00 0.00 3.77
4449 13396 3.805971 GCTTGTAGTCGTTGTTAGTTGGT 59.194 43.478 0.00 0.00 0.00 3.67
4453 13400 6.579666 TGTAGTCGTTGTTAGTTGGTCTAT 57.420 37.500 0.00 0.00 0.00 1.98
4454 13401 7.686438 TGTAGTCGTTGTTAGTTGGTCTATA 57.314 36.000 0.00 0.00 0.00 1.31
4455 13402 8.109705 TGTAGTCGTTGTTAGTTGGTCTATAA 57.890 34.615 0.00 0.00 0.00 0.98
4456 13403 8.575589 TGTAGTCGTTGTTAGTTGGTCTATAAA 58.424 33.333 0.00 0.00 0.00 1.40
4457 13404 9.410556 GTAGTCGTTGTTAGTTGGTCTATAAAA 57.589 33.333 0.00 0.00 0.00 1.52
4480 13851 6.569179 AAAAAGTTATATTCGCACACACCT 57.431 33.333 0.00 0.00 0.00 4.00
4482 13853 6.569179 AAAGTTATATTCGCACACACCTTT 57.431 33.333 0.00 0.00 0.00 3.11
4489 13860 1.822615 GCACACACCTTTTGGGCTT 59.177 52.632 0.00 0.00 46.08 4.35
4495 13866 3.181466 ACACACCTTTTGGGCTTGAAATC 60.181 43.478 0.00 0.00 46.08 2.17
4502 13873 5.410439 CCTTTTGGGCTTGAAATCATTTCTG 59.590 40.000 11.46 5.67 36.93 3.02
4506 13877 4.202336 TGGGCTTGAAATCATTTCTGCAAA 60.202 37.500 21.55 11.67 39.60 3.68
4508 13879 5.413523 GGGCTTGAAATCATTTCTGCAAATT 59.586 36.000 21.55 0.00 39.60 1.82
4511 13882 6.402875 GCTTGAAATCATTTCTGCAAATTCCC 60.403 38.462 17.77 0.00 40.32 3.97
4513 13884 6.167685 TGAAATCATTTCTGCAAATTCCCAG 58.832 36.000 11.46 0.17 40.32 4.45
4530 13901 2.093890 CCAGCAAACTGCCATACATCA 58.906 47.619 0.00 0.00 46.52 3.07
4563 13934 9.559958 GTACCACATCTTAATCATTTCAAGTTG 57.440 33.333 0.00 0.00 0.00 3.16
4570 13941 2.772568 TCATTTCAAGTTGCCACACG 57.227 45.000 0.00 0.00 0.00 4.49
4621 13992 7.381766 TGTGAATTGGATGAAGTAGACATTG 57.618 36.000 0.00 0.00 0.00 2.82
4622 13993 6.375174 TGTGAATTGGATGAAGTAGACATTGG 59.625 38.462 0.00 0.00 0.00 3.16
4629 14000 6.558394 TGGATGAAGTAGACATTGGGATATGA 59.442 38.462 0.00 0.00 0.00 2.15
4633 14004 5.713792 AGTAGACATTGGGATATGAGTCG 57.286 43.478 0.00 0.00 0.00 4.18
4634 14005 3.393089 AGACATTGGGATATGAGTCGC 57.607 47.619 0.00 0.00 0.00 5.19
4637 14008 4.021894 AGACATTGGGATATGAGTCGCTAC 60.022 45.833 0.00 0.00 32.75 3.58
4641 14012 3.230976 TGGGATATGAGTCGCTACATGT 58.769 45.455 2.69 2.69 32.75 3.21
4654 14025 5.120830 GTCGCTACATGTGAAATTCAACTCT 59.879 40.000 9.11 0.00 36.89 3.24
4694 14098 3.958860 GGGGCTGGTGCTCACTGT 61.959 66.667 0.00 0.00 42.67 3.55
4736 14140 2.591429 TCCACAAGTGCTGGTGCG 60.591 61.111 1.27 0.00 43.34 5.34
4782 14186 4.309950 AAGACCCGACACCGTGGC 62.310 66.667 3.03 0.00 31.93 5.01
4801 14205 0.179200 CATGCACCGCCTTTTCGTAC 60.179 55.000 0.00 0.00 0.00 3.67
4809 14213 1.193874 CGCCTTTTCGTACTTGACACC 59.806 52.381 0.00 0.00 0.00 4.16
4833 14237 0.887387 ACACCAACGCCGCTGTAATT 60.887 50.000 0.00 0.00 0.00 1.40
4835 14239 0.239879 ACCAACGCCGCTGTAATTTG 59.760 50.000 0.00 0.00 0.00 2.32
4876 14280 2.280457 GTGCCCTAGGATGAGCGC 60.280 66.667 11.48 8.01 0.00 5.92
4880 14284 2.050895 CCTAGGATGAGCGCGTCG 60.051 66.667 8.43 0.00 0.00 5.12
4881 14285 2.050895 CTAGGATGAGCGCGTCGG 60.051 66.667 8.43 0.00 0.00 4.79
4909 14496 4.821589 GGTTCGAGCTCCCCGCAG 62.822 72.222 8.47 0.00 42.61 5.18
4980 14567 3.412722 TGAGGTGCCACGTCATTTT 57.587 47.368 15.70 0.00 37.99 1.82
4981 14568 0.950836 TGAGGTGCCACGTCATTTTG 59.049 50.000 15.70 0.00 37.99 2.44
4982 14569 0.951558 GAGGTGCCACGTCATTTTGT 59.048 50.000 12.39 0.00 33.54 2.83
4983 14570 0.951558 AGGTGCCACGTCATTTTGTC 59.048 50.000 0.00 0.00 0.00 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
280 1577 9.066892 TGTGTTTGCTCTGAACTCTAAATTATT 57.933 29.630 0.00 0.00 0.00 1.40
341 1638 2.172717 ACTGAAATTATCCTGTCCCGGG 59.827 50.000 16.85 16.85 0.00 5.73
408 1705 2.156917 CATCCAGTGCACATGAGTTGT 58.843 47.619 21.04 0.00 39.91 3.32
409 1706 2.429478 TCATCCAGTGCACATGAGTTG 58.571 47.619 21.04 10.66 0.00 3.16
410 1707 2.816087 GTTCATCCAGTGCACATGAGTT 59.184 45.455 21.04 0.00 0.00 3.01
943 2969 3.582647 TCAATGAAACCCTACTCTGCAGA 59.417 43.478 17.19 17.19 0.00 4.26
944 2970 3.937706 CTCAATGAAACCCTACTCTGCAG 59.062 47.826 7.63 7.63 0.00 4.41
945 2971 3.582647 TCTCAATGAAACCCTACTCTGCA 59.417 43.478 0.00 0.00 0.00 4.41
1072 3100 0.179001 GTTGTACACCTGTGGCCCTT 60.179 55.000 0.00 0.00 34.19 3.95
1143 3172 0.107081 CAACCACCCCACAGTTCGTA 59.893 55.000 0.00 0.00 0.00 3.43
1178 3207 1.605457 CGCTCTTCTTAGTGCCACACA 60.605 52.381 0.00 0.00 37.55 3.72
1233 3262 1.297819 CCGCGCATGCAGTGTATTG 60.298 57.895 19.57 0.00 42.97 1.90
1234 3263 0.815213 ATCCGCGCATGCAGTGTATT 60.815 50.000 19.57 1.95 42.97 1.89
1235 3264 1.224069 GATCCGCGCATGCAGTGTAT 61.224 55.000 19.57 9.45 42.97 2.29
1236 3265 1.882625 GATCCGCGCATGCAGTGTA 60.883 57.895 19.57 4.70 42.97 2.90
1237 3266 3.197790 GATCCGCGCATGCAGTGT 61.198 61.111 19.57 2.48 42.97 3.55
1238 3267 3.945434 GGATCCGCGCATGCAGTG 61.945 66.667 19.57 16.09 42.97 3.66
1290 7160 4.838152 ATGGTGGCCGCGCTACAG 62.838 66.667 10.86 0.00 41.80 2.74
1292 7162 3.876198 CAATGGTGGCCGCGCTAC 61.876 66.667 10.86 4.36 39.31 3.58
1311 7181 4.616802 AGTCAAGCAAATACGCGAAAAATG 59.383 37.500 15.93 6.20 36.85 2.32
1321 7191 8.736244 TCTATTGGGTTAAAGTCAAGCAAATAC 58.264 33.333 0.00 0.00 32.96 1.89
1322 7192 8.871629 TCTATTGGGTTAAAGTCAAGCAAATA 57.128 30.769 0.00 0.00 32.96 1.40
1323 7193 7.775053 TCTATTGGGTTAAAGTCAAGCAAAT 57.225 32.000 0.00 0.00 34.66 2.32
1324 7194 7.589958 TTCTATTGGGTTAAAGTCAAGCAAA 57.410 32.000 0.00 0.00 0.00 3.68
1325 7195 7.286775 ACTTTCTATTGGGTTAAAGTCAAGCAA 59.713 33.333 0.00 0.00 37.57 3.91
1326 7196 6.775629 ACTTTCTATTGGGTTAAAGTCAAGCA 59.224 34.615 0.00 0.00 37.57 3.91
1327 7197 7.215719 ACTTTCTATTGGGTTAAAGTCAAGC 57.784 36.000 0.00 0.00 37.57 4.01
1335 7205 9.886132 GTCATTCTAGACTTTCTATTGGGTTAA 57.114 33.333 0.00 0.00 35.65 2.01
1336 7206 8.483758 GGTCATTCTAGACTTTCTATTGGGTTA 58.516 37.037 0.00 0.00 38.57 2.85
1337 7207 7.339482 GGTCATTCTAGACTTTCTATTGGGTT 58.661 38.462 0.00 0.00 38.57 4.11
1338 7208 6.126739 GGGTCATTCTAGACTTTCTATTGGGT 60.127 42.308 0.00 0.00 38.57 4.51
1339 7209 6.292150 GGGTCATTCTAGACTTTCTATTGGG 58.708 44.000 0.00 0.00 38.57 4.12
1340 7210 6.126768 TGGGGTCATTCTAGACTTTCTATTGG 60.127 42.308 0.00 0.00 38.57 3.16
1341 7211 6.889198 TGGGGTCATTCTAGACTTTCTATTG 58.111 40.000 0.00 0.00 38.57 1.90
1342 7212 7.472100 CGATGGGGTCATTCTAGACTTTCTATT 60.472 40.741 0.00 0.00 38.57 1.73
1343 7213 6.015010 CGATGGGGTCATTCTAGACTTTCTAT 60.015 42.308 0.00 0.00 38.57 1.98
1344 7214 5.302059 CGATGGGGTCATTCTAGACTTTCTA 59.698 44.000 0.00 0.00 38.57 2.10
1345 7215 4.100189 CGATGGGGTCATTCTAGACTTTCT 59.900 45.833 0.00 0.00 38.57 2.52
1346 7216 4.099573 TCGATGGGGTCATTCTAGACTTTC 59.900 45.833 0.00 0.00 38.57 2.62
1347 7217 4.030913 TCGATGGGGTCATTCTAGACTTT 58.969 43.478 0.00 0.00 38.57 2.66
1348 7218 3.643237 TCGATGGGGTCATTCTAGACTT 58.357 45.455 0.00 0.00 38.57 3.01
1349 7219 3.314307 TCGATGGGGTCATTCTAGACT 57.686 47.619 0.00 0.00 38.57 3.24
1350 7220 4.608948 ATTCGATGGGGTCATTCTAGAC 57.391 45.455 0.00 0.00 37.80 2.59
1351 7221 6.270000 ACATTATTCGATGGGGTCATTCTAGA 59.730 38.462 0.00 0.00 32.98 2.43
1352 7222 6.467677 ACATTATTCGATGGGGTCATTCTAG 58.532 40.000 0.00 0.00 32.98 2.43
1353 7223 6.433847 ACATTATTCGATGGGGTCATTCTA 57.566 37.500 0.00 0.00 32.98 2.10
1354 7224 5.310409 ACATTATTCGATGGGGTCATTCT 57.690 39.130 0.00 0.00 32.98 2.40
1355 7225 7.390440 TCATAACATTATTCGATGGGGTCATTC 59.610 37.037 0.00 0.00 32.98 2.67
1356 7226 7.230747 TCATAACATTATTCGATGGGGTCATT 58.769 34.615 0.00 0.00 32.98 2.57
1357 7227 6.778821 TCATAACATTATTCGATGGGGTCAT 58.221 36.000 0.00 0.00 36.09 3.06
1358 7228 6.181206 TCATAACATTATTCGATGGGGTCA 57.819 37.500 0.00 0.00 0.00 4.02
1359 7229 5.643777 CCTCATAACATTATTCGATGGGGTC 59.356 44.000 0.00 0.00 34.05 4.46
1360 7230 5.514834 CCCTCATAACATTATTCGATGGGGT 60.515 44.000 0.00 0.00 36.56 4.95
1361 7231 4.943705 CCCTCATAACATTATTCGATGGGG 59.056 45.833 0.00 0.00 37.82 4.96
1362 7232 4.943705 CCCCTCATAACATTATTCGATGGG 59.056 45.833 0.00 0.00 0.00 4.00
1363 7233 4.943705 CCCCCTCATAACATTATTCGATGG 59.056 45.833 0.00 0.00 0.00 3.51
1394 7264 2.607442 AAGGTTGGGGGCCAATGC 60.607 61.111 4.39 0.00 45.80 3.56
1395 7265 2.292559 CCAAGGTTGGGGGCCAATG 61.293 63.158 4.39 0.00 45.80 2.82
1396 7266 1.825277 ATCCAAGGTTGGGGGCCAAT 61.825 55.000 4.39 0.00 45.80 3.16
1424 7294 5.906113 TTCCAATATAAGCTCGCCAAAAA 57.094 34.783 0.00 0.00 0.00 1.94
1425 7295 5.906113 TTTCCAATATAAGCTCGCCAAAA 57.094 34.783 0.00 0.00 0.00 2.44
1426 7296 6.463995 AATTTCCAATATAAGCTCGCCAAA 57.536 33.333 0.00 0.00 0.00 3.28
1427 7297 6.460953 GGAAATTTCCAATATAAGCTCGCCAA 60.461 38.462 28.76 0.00 46.76 4.52
1428 7298 5.009610 GGAAATTTCCAATATAAGCTCGCCA 59.990 40.000 28.76 0.00 46.76 5.69
1429 7299 5.461526 GGAAATTTCCAATATAAGCTCGCC 58.538 41.667 28.76 0.00 46.76 5.54
1444 7314 3.069443 TGGTGGAGTTTGCTGGAAATTTC 59.931 43.478 9.83 9.83 0.00 2.17
1445 7315 3.037549 TGGTGGAGTTTGCTGGAAATTT 58.962 40.909 0.00 0.00 0.00 1.82
1446 7316 2.365293 GTGGTGGAGTTTGCTGGAAATT 59.635 45.455 0.00 0.00 0.00 1.82
1447 7317 1.963515 GTGGTGGAGTTTGCTGGAAAT 59.036 47.619 0.00 0.00 0.00 2.17
1448 7318 1.064017 AGTGGTGGAGTTTGCTGGAAA 60.064 47.619 0.00 0.00 0.00 3.13
1449 7319 0.550914 AGTGGTGGAGTTTGCTGGAA 59.449 50.000 0.00 0.00 0.00 3.53
1450 7320 0.179020 CAGTGGTGGAGTTTGCTGGA 60.179 55.000 0.00 0.00 0.00 3.86
1451 7321 1.799258 GCAGTGGTGGAGTTTGCTGG 61.799 60.000 0.00 0.00 0.00 4.85
1452 7322 1.102809 TGCAGTGGTGGAGTTTGCTG 61.103 55.000 0.00 0.00 35.85 4.41
1453 7323 0.178981 ATGCAGTGGTGGAGTTTGCT 60.179 50.000 0.00 0.00 35.85 3.91
1454 7324 1.200020 GTATGCAGTGGTGGAGTTTGC 59.800 52.381 0.00 0.00 35.42 3.68
1455 7325 2.503331 TGTATGCAGTGGTGGAGTTTG 58.497 47.619 0.00 0.00 0.00 2.93
1456 7326 2.949177 TGTATGCAGTGGTGGAGTTT 57.051 45.000 0.00 0.00 0.00 2.66
1457 7327 2.949177 TTGTATGCAGTGGTGGAGTT 57.051 45.000 0.00 0.00 0.00 3.01
1458 7328 3.519510 ACTATTGTATGCAGTGGTGGAGT 59.480 43.478 0.00 0.00 0.00 3.85
1459 7329 4.142609 ACTATTGTATGCAGTGGTGGAG 57.857 45.455 0.00 0.00 0.00 3.86
1460 7330 4.568072 AACTATTGTATGCAGTGGTGGA 57.432 40.909 0.00 0.00 0.00 4.02
1461 7331 6.942532 ATTAACTATTGTATGCAGTGGTGG 57.057 37.500 0.00 0.00 0.00 4.61
1462 7332 7.984391 TGAATTAACTATTGTATGCAGTGGTG 58.016 34.615 0.00 0.00 0.00 4.17
1463 7333 8.752005 ATGAATTAACTATTGTATGCAGTGGT 57.248 30.769 0.00 0.00 0.00 4.16
1473 7343 9.975218 AGGGTTTGAGTATGAATTAACTATTGT 57.025 29.630 0.00 0.00 0.00 2.71
1477 7347 9.609346 GCTAAGGGTTTGAGTATGAATTAACTA 57.391 33.333 0.00 0.00 0.00 2.24
1478 7348 7.280205 CGCTAAGGGTTTGAGTATGAATTAACT 59.720 37.037 0.00 0.00 0.00 2.24
1479 7349 7.279313 TCGCTAAGGGTTTGAGTATGAATTAAC 59.721 37.037 0.00 0.00 0.00 2.01
1480 7350 7.332557 TCGCTAAGGGTTTGAGTATGAATTAA 58.667 34.615 0.00 0.00 0.00 1.40
1481 7351 6.880484 TCGCTAAGGGTTTGAGTATGAATTA 58.120 36.000 0.00 0.00 0.00 1.40
1482 7352 5.741011 TCGCTAAGGGTTTGAGTATGAATT 58.259 37.500 0.00 0.00 0.00 2.17
1483 7353 5.353394 TCGCTAAGGGTTTGAGTATGAAT 57.647 39.130 0.00 0.00 0.00 2.57
1484 7354 4.811969 TCGCTAAGGGTTTGAGTATGAA 57.188 40.909 0.00 0.00 0.00 2.57
1485 7355 4.501071 GTTCGCTAAGGGTTTGAGTATGA 58.499 43.478 0.00 0.00 0.00 2.15
1486 7356 3.621715 GGTTCGCTAAGGGTTTGAGTATG 59.378 47.826 0.00 0.00 0.00 2.39
1487 7357 3.370209 GGGTTCGCTAAGGGTTTGAGTAT 60.370 47.826 0.00 0.00 0.00 2.12
1488 7358 2.027837 GGGTTCGCTAAGGGTTTGAGTA 60.028 50.000 0.00 0.00 0.00 2.59
1489 7359 1.271217 GGGTTCGCTAAGGGTTTGAGT 60.271 52.381 0.00 0.00 0.00 3.41
1490 7360 1.271163 TGGGTTCGCTAAGGGTTTGAG 60.271 52.381 0.00 0.00 0.00 3.02
1491 7361 0.766131 TGGGTTCGCTAAGGGTTTGA 59.234 50.000 0.00 0.00 0.00 2.69
1492 7362 1.834188 ATGGGTTCGCTAAGGGTTTG 58.166 50.000 0.00 0.00 0.00 2.93
1493 7363 2.597578 AATGGGTTCGCTAAGGGTTT 57.402 45.000 0.00 0.00 0.00 3.27
1494 7364 2.682858 GCTAATGGGTTCGCTAAGGGTT 60.683 50.000 0.00 0.00 0.00 4.11
1495 7365 1.134189 GCTAATGGGTTCGCTAAGGGT 60.134 52.381 0.00 0.00 0.00 4.34
1496 7366 1.134220 TGCTAATGGGTTCGCTAAGGG 60.134 52.381 0.00 0.00 0.00 3.95
1497 7367 2.325583 TGCTAATGGGTTCGCTAAGG 57.674 50.000 0.00 0.00 0.00 2.69
1498 7368 4.695217 TTTTGCTAATGGGTTCGCTAAG 57.305 40.909 0.00 0.00 0.00 2.18
1499 7369 5.652994 AATTTTGCTAATGGGTTCGCTAA 57.347 34.783 0.00 0.00 0.00 3.09
1500 7370 5.393678 GGAAATTTTGCTAATGGGTTCGCTA 60.394 40.000 0.00 0.00 0.00 4.26
1501 7371 4.494484 GAAATTTTGCTAATGGGTTCGCT 58.506 39.130 0.00 0.00 0.00 4.93
1502 7372 3.616821 GGAAATTTTGCTAATGGGTTCGC 59.383 43.478 0.00 0.00 0.00 4.70
1503 7373 4.864247 CAGGAAATTTTGCTAATGGGTTCG 59.136 41.667 2.62 0.00 0.00 3.95
1504 7374 5.178061 CCAGGAAATTTTGCTAATGGGTTC 58.822 41.667 2.62 0.00 0.00 3.62
1505 7375 4.565444 GCCAGGAAATTTTGCTAATGGGTT 60.565 41.667 2.62 0.00 0.00 4.11
1506 7376 3.055167 GCCAGGAAATTTTGCTAATGGGT 60.055 43.478 2.62 0.00 0.00 4.51
1507 7377 3.198417 AGCCAGGAAATTTTGCTAATGGG 59.802 43.478 2.62 2.11 0.00 4.00
1508 7378 4.436332 GAGCCAGGAAATTTTGCTAATGG 58.564 43.478 2.62 3.33 31.23 3.16
1509 7379 4.436332 GGAGCCAGGAAATTTTGCTAATG 58.564 43.478 2.62 0.00 31.23 1.90
1510 7380 3.131046 CGGAGCCAGGAAATTTTGCTAAT 59.869 43.478 2.62 0.00 31.23 1.73
1511 7381 2.491693 CGGAGCCAGGAAATTTTGCTAA 59.508 45.455 2.62 0.00 31.23 3.09
1512 7382 2.091541 CGGAGCCAGGAAATTTTGCTA 58.908 47.619 2.62 0.00 31.23 3.49
1513 7383 0.890683 CGGAGCCAGGAAATTTTGCT 59.109 50.000 0.00 0.00 34.40 3.91
1514 7384 3.423848 CGGAGCCAGGAAATTTTGC 57.576 52.632 0.00 0.00 0.00 3.68
1550 7420 2.293399 CGCCCCAATATTTAACTGCCTC 59.707 50.000 0.00 0.00 0.00 4.70
1551 7421 2.092103 TCGCCCCAATATTTAACTGCCT 60.092 45.455 0.00 0.00 0.00 4.75
1998 7892 2.694628 CAGGGCTAGCAATTTGGCAATA 59.305 45.455 18.24 0.00 35.83 1.90
2188 8380 1.336755 GTCGGGCAAAGAAAGAAGCAA 59.663 47.619 0.00 0.00 0.00 3.91
2192 8384 0.476771 AGGGTCGGGCAAAGAAAGAA 59.523 50.000 0.00 0.00 0.00 2.52
2193 8385 0.476771 AAGGGTCGGGCAAAGAAAGA 59.523 50.000 0.00 0.00 0.00 2.52
2194 8386 2.194201 TAAGGGTCGGGCAAAGAAAG 57.806 50.000 0.00 0.00 0.00 2.62
2195 8387 2.624364 GTTTAAGGGTCGGGCAAAGAAA 59.376 45.455 0.00 0.00 0.00 2.52
2268 8460 1.697432 ACTAGTTGCCACTTGCCAGTA 59.303 47.619 0.00 0.00 40.16 2.74
2327 8522 9.862371 GAAACTTATGAAAGAGTGAGTGATAGA 57.138 33.333 0.00 0.00 36.50 1.98
2328 8523 9.868277 AGAAACTTATGAAAGAGTGAGTGATAG 57.132 33.333 0.00 0.00 36.50 2.08
2330 8525 9.566432 AAAGAAACTTATGAAAGAGTGAGTGAT 57.434 29.630 0.00 0.00 36.50 3.06
2372 8571 4.271049 CCTGTCGATTTGTAAGCATACCAG 59.729 45.833 0.00 0.00 0.00 4.00
2847 9050 2.224079 TCTGTGCGACTTTGAATCTTGC 59.776 45.455 0.00 0.00 0.00 4.01
2912 9115 1.006832 CACGATCAACCCGTCATTCC 58.993 55.000 0.00 0.00 38.29 3.01
3259 9474 1.198759 AGCTTCTGCCCCGTCCTTAA 61.199 55.000 0.00 0.00 40.80 1.85
3260 9475 1.612442 AGCTTCTGCCCCGTCCTTA 60.612 57.895 0.00 0.00 40.80 2.69
3308 9526 2.291670 ACCGTCCACTAGAATCCTGTCT 60.292 50.000 0.00 0.00 0.00 3.41
3325 9543 2.182791 CTGATCTGCGCTCACCGT 59.817 61.111 9.73 0.00 39.71 4.83
3453 9671 1.549950 GCCAAGAAAATCACCCCTGGA 60.550 52.381 0.00 0.00 0.00 3.86
3794 10018 3.126001 AGGATTGTCTTTGCGTTCTCA 57.874 42.857 0.00 0.00 0.00 3.27
3809 10033 1.815421 CTTGTGCGCCGCTAGGATT 60.815 57.895 11.67 0.00 41.02 3.01
3847 10071 3.706373 GCTCCAGGAGGGCGACAA 61.706 66.667 18.83 0.00 36.21 3.18
3875 10099 1.433879 CGTGATCTGGTCTCCGGTC 59.566 63.158 0.00 0.00 0.00 4.79
3938 10170 0.606401 CTTCTTCCTCTTGCGGCCAA 60.606 55.000 2.24 0.00 0.00 4.52
3976 10211 3.446161 TCGTGTTTCCTGATTCTACCGAT 59.554 43.478 0.00 0.00 0.00 4.18
3981 10216 4.527038 AGAAGGTCGTGTTTCCTGATTCTA 59.473 41.667 0.00 0.00 33.97 2.10
3998 10237 4.322801 CCGAAGTGTTAGGATGAAGAAGGT 60.323 45.833 0.00 0.00 0.00 3.50
4016 10255 5.883503 AACTGTTAGTCTAGTCTCCGAAG 57.116 43.478 0.00 0.00 0.00 3.79
4041 10280 7.294017 AGAAGAAGAAAATCATTGCAAGGAA 57.706 32.000 18.75 1.69 0.00 3.36
4046 10285 7.274447 ACCAAAAGAAGAAGAAAATCATTGCA 58.726 30.769 0.00 0.00 0.00 4.08
4059 10298 8.825745 GCAACAAATAATGAACCAAAAGAAGAA 58.174 29.630 0.00 0.00 0.00 2.52
4061 10300 8.140677 TGCAACAAATAATGAACCAAAAGAAG 57.859 30.769 0.00 0.00 0.00 2.85
4062 10301 8.674263 ATGCAACAAATAATGAACCAAAAGAA 57.326 26.923 0.00 0.00 0.00 2.52
4094 10334 6.898041 TCCAGAACGTAAATCTTCACATTTG 58.102 36.000 0.00 0.00 0.00 2.32
4110 10350 1.065854 AGGCCAGAGAAATCCAGAACG 60.066 52.381 5.01 0.00 0.00 3.95
4176 10419 9.088987 ACCAATAGAAATACTGGTTTGAAACAT 57.911 29.630 10.53 0.00 39.14 2.71
4177 10420 8.472007 ACCAATAGAAATACTGGTTTGAAACA 57.528 30.769 10.53 0.00 39.14 2.83
4178 10421 7.749126 CGACCAATAGAAATACTGGTTTGAAAC 59.251 37.037 0.00 0.00 42.27 2.78
4218 10462 6.146216 GGGTTTGTGTTTCAAAAAGGTTTTG 58.854 36.000 7.05 7.05 45.84 2.44
4224 10468 5.181748 TGATGGGGTTTGTGTTTCAAAAAG 58.818 37.500 0.00 0.00 45.84 2.27
4225 10469 5.165961 TGATGGGGTTTGTGTTTCAAAAA 57.834 34.783 0.00 0.00 45.84 1.94
4262 10528 5.010112 TCAATGAAATCGTAAAGTTGGGCAA 59.990 36.000 0.00 0.00 0.00 4.52
4275 10541 3.250762 ACACACACCTGTCAATGAAATCG 59.749 43.478 0.00 0.00 0.00 3.34
4279 10545 2.997980 ACACACACACCTGTCAATGAA 58.002 42.857 0.00 0.00 0.00 2.57
4283 10549 0.808125 GCAACACACACACCTGTCAA 59.192 50.000 0.00 0.00 0.00 3.18
4286 10552 1.752694 GGGCAACACACACACCTGT 60.753 57.895 0.00 0.00 39.74 4.00
4287 10553 2.489275 GGGGCAACACACACACCTG 61.489 63.158 0.00 0.00 42.67 4.00
4288 10554 2.123897 GGGGCAACACACACACCT 60.124 61.111 0.00 0.00 42.67 4.00
4296 10562 1.603739 GGAACAGAGGGGGCAACAC 60.604 63.158 0.00 0.00 42.03 3.32
4297 10563 1.650242 TTGGAACAGAGGGGGCAACA 61.650 55.000 0.00 0.00 42.39 3.33
4298 10564 1.152830 TTGGAACAGAGGGGGCAAC 59.847 57.895 0.00 0.00 42.39 4.17
4299 10565 1.152830 GTTGGAACAGAGGGGGCAA 59.847 57.895 0.00 0.00 42.39 4.52
4300 10566 2.081787 TGTTGGAACAGAGGGGGCA 61.082 57.895 0.00 0.00 42.39 5.36
4301 10567 1.603739 GTGTTGGAACAGAGGGGGC 60.604 63.158 0.00 0.00 42.39 5.80
4302 10568 0.537371 GTGTGTTGGAACAGAGGGGG 60.537 60.000 0.00 0.00 42.39 5.40
4303 10569 0.537371 GGTGTGTTGGAACAGAGGGG 60.537 60.000 0.00 0.00 42.39 4.79
4317 10583 6.424207 GGACTTAACTTAGAACTTGAGGTGTG 59.576 42.308 0.00 0.00 0.00 3.82
4319 10585 6.760291 AGGACTTAACTTAGAACTTGAGGTG 58.240 40.000 0.00 0.00 0.00 4.00
4322 10588 9.628746 GACTTAGGACTTAACTTAGAACTTGAG 57.371 37.037 0.00 0.00 0.00 3.02
4336 10602 9.807921 ATTCCAAGAAATTTGACTTAGGACTTA 57.192 29.630 0.00 0.00 0.00 2.24
4338 10604 8.712228 AATTCCAAGAAATTTGACTTAGGACT 57.288 30.769 0.00 0.00 0.00 3.85
4341 10607 9.341899 CGTAAATTCCAAGAAATTTGACTTAGG 57.658 33.333 0.00 0.00 38.82 2.69
4365 10631 7.231925 ACCCACCAATTTTTCTATAAAGTTCGT 59.768 33.333 0.00 0.00 0.00 3.85
4366 10632 7.540745 CACCCACCAATTTTTCTATAAAGTTCG 59.459 37.037 0.00 0.00 0.00 3.95
4367 10633 8.364894 ACACCCACCAATTTTTCTATAAAGTTC 58.635 33.333 0.00 0.00 0.00 3.01
4376 10643 4.407365 CCTAGACACCCACCAATTTTTCT 58.593 43.478 0.00 0.00 0.00 2.52
4385 10652 1.079336 GAACGCCTAGACACCCACC 60.079 63.158 0.00 0.00 0.00 4.61
4413 10680 2.740055 AAGCACTGAAGCGAGCCG 60.740 61.111 0.00 0.00 40.15 5.52
4415 10682 0.718343 CTACAAGCACTGAAGCGAGC 59.282 55.000 0.00 0.00 40.15 5.03
4417 10684 1.666023 CGACTACAAGCACTGAAGCGA 60.666 52.381 0.00 0.00 40.15 4.93
4419 10686 1.784525 ACGACTACAAGCACTGAAGC 58.215 50.000 0.00 0.00 0.00 3.86
4421 10688 3.173668 ACAACGACTACAAGCACTGAA 57.826 42.857 0.00 0.00 0.00 3.02
4424 10691 4.317671 ACTAACAACGACTACAAGCACT 57.682 40.909 0.00 0.00 0.00 4.40
4426 10693 3.805422 CCAACTAACAACGACTACAAGCA 59.195 43.478 0.00 0.00 0.00 3.91
4427 10694 3.805971 ACCAACTAACAACGACTACAAGC 59.194 43.478 0.00 0.00 0.00 4.01
4429 13376 5.266733 AGACCAACTAACAACGACTACAA 57.733 39.130 0.00 0.00 0.00 2.41
4457 13404 6.569179 AGGTGTGTGCGAATATAACTTTTT 57.431 33.333 0.00 0.00 0.00 1.94
4461 13408 5.106317 CCAAAAGGTGTGTGCGAATATAACT 60.106 40.000 0.00 0.00 0.00 2.24
4462 13409 5.092781 CCAAAAGGTGTGTGCGAATATAAC 58.907 41.667 0.00 0.00 0.00 1.89
4463 13410 4.156922 CCCAAAAGGTGTGTGCGAATATAA 59.843 41.667 0.00 0.00 0.00 0.98
4464 13411 3.692101 CCCAAAAGGTGTGTGCGAATATA 59.308 43.478 0.00 0.00 0.00 0.86
4465 13412 2.491693 CCCAAAAGGTGTGTGCGAATAT 59.508 45.455 0.00 0.00 0.00 1.28
4467 13414 0.673437 CCCAAAAGGTGTGTGCGAAT 59.327 50.000 0.00 0.00 0.00 3.34
4468 13415 2.010582 GCCCAAAAGGTGTGTGCGAA 62.011 55.000 0.00 0.00 38.26 4.70
4469 13416 2.485795 GCCCAAAAGGTGTGTGCGA 61.486 57.895 0.00 0.00 38.26 5.10
4470 13417 2.015227 AAGCCCAAAAGGTGTGTGCG 62.015 55.000 0.00 0.00 38.26 5.34
4471 13418 0.530431 CAAGCCCAAAAGGTGTGTGC 60.530 55.000 0.00 0.00 38.26 4.57
4474 13845 2.977772 TTTCAAGCCCAAAAGGTGTG 57.022 45.000 0.00 0.00 38.26 3.82
4476 13847 3.749665 TGATTTCAAGCCCAAAAGGTG 57.250 42.857 0.00 0.00 38.26 4.00
4477 13848 4.980339 AATGATTTCAAGCCCAAAAGGT 57.020 36.364 0.00 0.00 38.26 3.50
4480 13851 4.756135 GCAGAAATGATTTCAAGCCCAAAA 59.244 37.500 19.02 0.00 42.10 2.44
4482 13853 3.324268 TGCAGAAATGATTTCAAGCCCAA 59.676 39.130 23.21 9.80 42.10 4.12
4489 13860 6.111669 TGGGAATTTGCAGAAATGATTTCA 57.888 33.333 19.02 0.00 42.10 2.69
4495 13866 3.322211 TGCTGGGAATTTGCAGAAATG 57.678 42.857 0.00 0.00 31.83 2.32
4502 13873 1.150827 GCAGTTTGCTGGGAATTTGC 58.849 50.000 0.00 0.00 42.78 3.68
4506 13877 2.102578 GTATGGCAGTTTGCTGGGAAT 58.897 47.619 0.00 0.00 44.28 3.01
4508 13879 0.403655 TGTATGGCAGTTTGCTGGGA 59.596 50.000 0.00 0.00 44.28 4.37
4511 13882 5.503662 TTATGATGTATGGCAGTTTGCTG 57.496 39.130 0.00 0.00 44.28 4.41
4513 13884 7.651808 ACTAATTATGATGTATGGCAGTTTGC 58.348 34.615 0.00 0.00 44.08 3.68
4540 13911 6.532657 GGCAACTTGAAATGATTAAGATGTGG 59.467 38.462 0.00 0.00 30.00 4.17
4550 13921 2.607771 GCGTGTGGCAACTTGAAATGAT 60.608 45.455 0.00 0.00 42.87 2.45
4563 13934 1.207593 GTTGAGATGTGCGTGTGGC 59.792 57.895 0.00 0.00 43.96 5.01
4570 13941 4.726416 ATGTCAAATTCGTTGAGATGTGC 58.274 39.130 0.00 0.00 45.84 4.57
4621 13992 3.255888 TCACATGTAGCGACTCATATCCC 59.744 47.826 0.00 0.00 0.00 3.85
4622 13993 4.505313 TCACATGTAGCGACTCATATCC 57.495 45.455 0.00 0.00 0.00 2.59
4629 14000 4.997395 AGTTGAATTTCACATGTAGCGACT 59.003 37.500 0.00 0.00 0.00 4.18
4633 14004 6.818644 TCCTAGAGTTGAATTTCACATGTAGC 59.181 38.462 0.00 0.00 0.00 3.58
4634 14005 8.777865 TTCCTAGAGTTGAATTTCACATGTAG 57.222 34.615 0.00 3.49 0.00 2.74
4637 14008 9.918630 AATTTTCCTAGAGTTGAATTTCACATG 57.081 29.630 0.00 0.00 0.00 3.21
4641 14012 7.083858 CGCAATTTTCCTAGAGTTGAATTTCA 58.916 34.615 0.00 0.00 0.00 2.69
4654 14025 4.262249 CCCTGTTTTTCCGCAATTTTCCTA 60.262 41.667 0.00 0.00 0.00 2.94
4736 14140 1.736032 GCGGTGTCACCATCTACTGTC 60.736 57.143 21.91 0.00 38.47 3.51
4782 14186 0.179200 GTACGAAAAGGCGGTGCATG 60.179 55.000 0.00 0.00 35.12 4.06
4787 14191 1.202557 TGTCAAGTACGAAAAGGCGGT 60.203 47.619 0.00 0.00 35.12 5.68
4801 14205 0.813610 TTGGTGTGCGAGGTGTCAAG 60.814 55.000 0.00 0.00 0.00 3.02
4909 14496 0.103208 CAGTGTATCGGAGTGGCTCC 59.897 60.000 5.15 5.15 46.44 4.70
4919 14506 0.802222 CACGGCACCTCAGTGTATCG 60.802 60.000 0.00 0.00 46.35 2.92
4925 14512 4.626081 GTGGCACGGCACCTCAGT 62.626 66.667 12.42 0.00 0.00 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.