Multiple sequence alignment - TraesCS5B01G524000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G524000 chr5B 100.000 9665 0 0 1 9665 684628097 684637761 0.000000e+00 17848.0
1 TraesCS5B01G524000 chr5B 98.642 8910 103 8 768 9665 684642566 684651469 0.000000e+00 15767.0
2 TraesCS5B01G524000 chr5B 89.977 1277 77 24 702 1945 684690239 684691497 0.000000e+00 1602.0
3 TraesCS5B01G524000 chr5B 96.187 577 18 3 8667 9242 606292544 606291971 0.000000e+00 941.0
4 TraesCS5B01G524000 chr5B 84.009 913 99 18 1045 1910 684622202 684623114 0.000000e+00 833.0
5 TraesCS5B01G524000 chr5B 80.225 1158 171 27 800 1925 684610576 684611707 0.000000e+00 817.0
6 TraesCS5B01G524000 chr5B 89.786 421 37 5 8184 8600 522583646 522584064 1.430000e-147 534.0
7 TraesCS5B01G524000 chr5B 83.221 447 27 16 264 695 684689756 684690169 5.520000e-97 366.0
8 TraesCS5B01G524000 chr5B 94.915 59 3 0 8603 8661 684691493 684691551 1.030000e-14 93.5
9 TraesCS5B01G524000 chr7B 92.712 6710 424 31 1946 8605 393076803 393070109 0.000000e+00 9622.0
10 TraesCS5B01G524000 chr7B 93.069 6449 406 33 1938 8351 424515712 424522154 0.000000e+00 9395.0
11 TraesCS5B01G524000 chr7B 96.718 579 16 2 8666 9242 84903612 84903035 0.000000e+00 961.0
12 TraesCS5B01G524000 chr7B 96.220 582 14 5 8667 9242 606559921 606559342 0.000000e+00 946.0
13 TraesCS5B01G524000 chr7B 96.487 427 15 0 9239 9665 676830514 676830940 0.000000e+00 706.0
14 TraesCS5B01G524000 chr3B 92.554 6688 451 31 1945 8603 773559230 773552561 0.000000e+00 9548.0
15 TraesCS5B01G524000 chr3B 91.243 6703 518 40 1945 8603 46052317 46045640 0.000000e+00 9062.0
16 TraesCS5B01G524000 chr3B 96.348 575 16 3 8667 9239 787087816 787088387 0.000000e+00 941.0
17 TraesCS5B01G524000 chr2B 91.918 6719 456 52 1946 8606 141846108 141852797 0.000000e+00 9319.0
18 TraesCS5B01G524000 chr2B 96.194 578 17 3 8666 9242 704226774 704226201 0.000000e+00 941.0
19 TraesCS5B01G524000 chr2B 96.948 426 12 1 9240 9665 32115520 32115096 0.000000e+00 713.0
20 TraesCS5B01G524000 chr2B 96.714 426 14 0 9240 9665 800437597 800437172 0.000000e+00 710.0
21 TraesCS5B01G524000 chr6B 92.512 6437 439 28 1946 8351 142740492 142746916 0.000000e+00 9177.0
22 TraesCS5B01G524000 chr6B 96.721 427 13 1 9240 9665 39349911 39350337 0.000000e+00 710.0
23 TraesCS5B01G524000 chr6B 96.714 426 14 0 9240 9665 65195086 65194661 0.000000e+00 710.0
24 TraesCS5B01G524000 chr6B 85.983 478 52 12 8135 8602 142776806 142777278 1.870000e-136 497.0
25 TraesCS5B01G524000 chr4B 92.431 6434 451 28 1946 8351 250744148 250737723 0.000000e+00 9151.0
26 TraesCS5B01G524000 chr4B 96.367 578 17 3 8666 9239 92163803 92164380 0.000000e+00 948.0
27 TraesCS5B01G524000 chr4B 96.367 578 18 3 8667 9242 186649300 186648724 0.000000e+00 948.0
28 TraesCS5B01G524000 chr4B 96.479 426 14 1 9240 9665 657946781 657947205 0.000000e+00 702.0
29 TraesCS5B01G524000 chr1D 92.358 6438 440 38 1947 8350 188336812 188330393 0.000000e+00 9116.0
30 TraesCS5B01G524000 chr5D 91.883 1158 63 15 796 1936 543235512 543236655 0.000000e+00 1589.0
31 TraesCS5B01G524000 chr5D 86.097 971 103 19 993 1935 543229599 543230565 0.000000e+00 1016.0
32 TraesCS5B01G524000 chr5D 81.591 1081 154 18 884 1925 543213475 543214549 0.000000e+00 852.0
33 TraesCS5B01G524000 chr5D 79.652 1150 159 43 800 1909 543092468 543093582 0.000000e+00 758.0
34 TraesCS5B01G524000 chr5D 80.947 971 156 18 989 1945 543068157 543069112 0.000000e+00 741.0
35 TraesCS5B01G524000 chr5D 78.712 1165 190 28 800 1935 543099705 543100840 0.000000e+00 725.0
36 TraesCS5B01G524000 chr5D 83.374 818 58 21 1 787 543234701 543235471 0.000000e+00 686.0
37 TraesCS5B01G524000 chr5D 84.046 702 94 10 1246 1933 543223758 543224455 0.000000e+00 660.0
38 TraesCS5B01G524000 chr5D 83.114 533 81 8 1385 1912 542109640 542110168 2.440000e-130 477.0
39 TraesCS5B01G524000 chr5D 79.150 494 89 10 1397 1887 542204440 542204922 7.240000e-86 329.0
40 TraesCS5B01G524000 chr5D 93.443 61 3 1 8607 8666 543236727 543236787 1.340000e-13 89.8
41 TraesCS5B01G524000 chr4A 96.360 577 16 4 8667 9239 699158737 699159312 0.000000e+00 944.0
42 TraesCS5B01G524000 chr4A 80.796 1156 167 21 813 1925 626049573 626048430 0.000000e+00 854.0
43 TraesCS5B01G524000 chr4A 83.042 973 109 22 993 1909 626014182 626013210 0.000000e+00 832.0
44 TraesCS5B01G524000 chr4A 94.175 515 28 1 1431 1945 625995898 625995386 0.000000e+00 784.0
45 TraesCS5B01G524000 chr4A 79.028 1173 191 28 800 1945 626065948 626064804 0.000000e+00 752.0
46 TraesCS5B01G524000 chr4A 96.479 426 15 0 9240 9665 675621055 675620630 0.000000e+00 704.0
47 TraesCS5B01G524000 chr4A 96.479 426 14 1 9240 9665 740650606 740650182 0.000000e+00 702.0
48 TraesCS5B01G524000 chr4A 83.819 686 93 9 1255 1925 626022067 626021385 3.810000e-178 636.0
49 TraesCS5B01G524000 chr4A 88.699 292 20 5 206 497 626007492 626007214 2.580000e-90 344.0
50 TraesCS5B01G524000 chr4A 85.959 292 20 4 513 787 626001624 626001337 9.490000e-75 292.0
51 TraesCS5B01G524000 chr4A 91.150 113 9 1 1 113 626007687 626007576 1.680000e-32 152.0
52 TraesCS5B01G524000 chr4A 96.667 60 1 1 796 855 626001296 626001238 2.220000e-16 99.0
53 TraesCS5B01G524000 chr4A 82.203 118 14 5 384 497 626014688 626014574 2.870000e-15 95.3
54 TraesCS5B01G524000 chr6D 87.624 808 85 10 7555 8350 462661960 462662764 0.000000e+00 924.0
55 TraesCS5B01G524000 chr6D 87.624 808 83 10 7555 8351 29880574 29881375 0.000000e+00 922.0
56 TraesCS5B01G524000 chrUn 87.843 510 50 8 8102 8602 340493493 340493999 1.080000e-163 588.0
57 TraesCS5B01G524000 chrUn 84.324 555 70 11 8064 8605 436327541 436326991 2.390000e-145 527.0
58 TraesCS5B01G524000 chr2A 86.345 498 62 5 8109 8602 755934796 755934301 1.100000e-148 538.0
59 TraesCS5B01G524000 chr3A 89.145 433 38 4 8176 8602 488254014 488253585 1.850000e-146 531.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G524000 chr5B 684628097 684637761 9664 False 17848.000000 17848 100.000000 1 9665 1 chr5B.!!$F4 9664
1 TraesCS5B01G524000 chr5B 684642566 684651469 8903 False 15767.000000 15767 98.642000 768 9665 1 chr5B.!!$F5 8897
2 TraesCS5B01G524000 chr5B 606291971 606292544 573 True 941.000000 941 96.187000 8667 9242 1 chr5B.!!$R1 575
3 TraesCS5B01G524000 chr5B 684622202 684623114 912 False 833.000000 833 84.009000 1045 1910 1 chr5B.!!$F3 865
4 TraesCS5B01G524000 chr5B 684610576 684611707 1131 False 817.000000 817 80.225000 800 1925 1 chr5B.!!$F2 1125
5 TraesCS5B01G524000 chr5B 684689756 684691551 1795 False 687.166667 1602 89.371000 264 8661 3 chr5B.!!$F6 8397
6 TraesCS5B01G524000 chr7B 393070109 393076803 6694 True 9622.000000 9622 92.712000 1946 8605 1 chr7B.!!$R2 6659
7 TraesCS5B01G524000 chr7B 424515712 424522154 6442 False 9395.000000 9395 93.069000 1938 8351 1 chr7B.!!$F1 6413
8 TraesCS5B01G524000 chr7B 84903035 84903612 577 True 961.000000 961 96.718000 8666 9242 1 chr7B.!!$R1 576
9 TraesCS5B01G524000 chr7B 606559342 606559921 579 True 946.000000 946 96.220000 8667 9242 1 chr7B.!!$R3 575
10 TraesCS5B01G524000 chr3B 773552561 773559230 6669 True 9548.000000 9548 92.554000 1945 8603 1 chr3B.!!$R2 6658
11 TraesCS5B01G524000 chr3B 46045640 46052317 6677 True 9062.000000 9062 91.243000 1945 8603 1 chr3B.!!$R1 6658
12 TraesCS5B01G524000 chr3B 787087816 787088387 571 False 941.000000 941 96.348000 8667 9239 1 chr3B.!!$F1 572
13 TraesCS5B01G524000 chr2B 141846108 141852797 6689 False 9319.000000 9319 91.918000 1946 8606 1 chr2B.!!$F1 6660
14 TraesCS5B01G524000 chr2B 704226201 704226774 573 True 941.000000 941 96.194000 8666 9242 1 chr2B.!!$R2 576
15 TraesCS5B01G524000 chr6B 142740492 142746916 6424 False 9177.000000 9177 92.512000 1946 8351 1 chr6B.!!$F2 6405
16 TraesCS5B01G524000 chr4B 250737723 250744148 6425 True 9151.000000 9151 92.431000 1946 8351 1 chr4B.!!$R2 6405
17 TraesCS5B01G524000 chr4B 92163803 92164380 577 False 948.000000 948 96.367000 8666 9239 1 chr4B.!!$F1 573
18 TraesCS5B01G524000 chr4B 186648724 186649300 576 True 948.000000 948 96.367000 8667 9242 1 chr4B.!!$R1 575
19 TraesCS5B01G524000 chr1D 188330393 188336812 6419 True 9116.000000 9116 92.358000 1947 8350 1 chr1D.!!$R1 6403
20 TraesCS5B01G524000 chr5D 543229599 543230565 966 False 1016.000000 1016 86.097000 993 1935 1 chr5D.!!$F8 942
21 TraesCS5B01G524000 chr5D 543213475 543214549 1074 False 852.000000 852 81.591000 884 1925 1 chr5D.!!$F6 1041
22 TraesCS5B01G524000 chr5D 543234701 543236787 2086 False 788.266667 1589 89.566667 1 8666 3 chr5D.!!$F9 8665
23 TraesCS5B01G524000 chr5D 543092468 543093582 1114 False 758.000000 758 79.652000 800 1909 1 chr5D.!!$F4 1109
24 TraesCS5B01G524000 chr5D 543068157 543069112 955 False 741.000000 741 80.947000 989 1945 1 chr5D.!!$F3 956
25 TraesCS5B01G524000 chr5D 543099705 543100840 1135 False 725.000000 725 78.712000 800 1935 1 chr5D.!!$F5 1135
26 TraesCS5B01G524000 chr5D 543223758 543224455 697 False 660.000000 660 84.046000 1246 1933 1 chr5D.!!$F7 687
27 TraesCS5B01G524000 chr5D 542109640 542110168 528 False 477.000000 477 83.114000 1385 1912 1 chr5D.!!$F1 527
28 TraesCS5B01G524000 chr4A 699158737 699159312 575 False 944.000000 944 96.360000 8667 9239 1 chr4A.!!$F1 572
29 TraesCS5B01G524000 chr4A 626048430 626049573 1143 True 854.000000 854 80.796000 813 1925 1 chr4A.!!$R3 1112
30 TraesCS5B01G524000 chr4A 625995386 625995898 512 True 784.000000 784 94.175000 1431 1945 1 chr4A.!!$R1 514
31 TraesCS5B01G524000 chr4A 626064804 626065948 1144 True 752.000000 752 79.028000 800 1945 1 chr4A.!!$R4 1145
32 TraesCS5B01G524000 chr4A 626021385 626022067 682 True 636.000000 636 83.819000 1255 1925 1 chr4A.!!$R2 670
33 TraesCS5B01G524000 chr4A 626013210 626014688 1478 True 463.650000 832 82.622500 384 1909 2 chr4A.!!$R9 1525
34 TraesCS5B01G524000 chr6D 462661960 462662764 804 False 924.000000 924 87.624000 7555 8350 1 chr6D.!!$F2 795
35 TraesCS5B01G524000 chr6D 29880574 29881375 801 False 922.000000 922 87.624000 7555 8351 1 chr6D.!!$F1 796
36 TraesCS5B01G524000 chrUn 340493493 340493999 506 False 588.000000 588 87.843000 8102 8602 1 chrUn.!!$F1 500
37 TraesCS5B01G524000 chrUn 436326991 436327541 550 True 527.000000 527 84.324000 8064 8605 1 chrUn.!!$R1 541

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
167 170 0.600255 CGGCTCGTCCACTCAAGTTT 60.600 55.0 0.00 0.0 34.01 2.66 F
496 544 0.669619 CATGTGTCACAGGCTGCAAA 59.330 50.0 15.89 0.0 0.00 3.68 F
2290 2631 0.320946 GGTTGTCGATGTCGGGGAAA 60.321 55.0 2.25 0.0 40.29 3.13 F
2517 2862 0.174617 GTGGCGAGAGGAAGGAGAAG 59.825 60.0 0.00 0.0 0.00 2.85 F
3048 3401 0.249784 CATCAGATCCCAGAGGCACG 60.250 60.0 0.00 0.0 0.00 5.34 F
3867 4221 0.449388 CGGCAAGTCATTCAAGAGCC 59.551 55.0 0.00 0.0 37.32 4.70 F
4943 5297 0.321298 GCCGAGCCTTGTACCTTTCA 60.321 55.0 0.00 0.0 0.00 2.69 F
6898 7253 0.178990 ACTTGTGGGGCTGGAAGTTC 60.179 55.0 0.00 0.0 35.30 3.01 F
7523 7879 0.040067 GAAGCAGCAAAACCACTCGG 60.040 55.0 0.00 0.0 38.77 4.63 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2164 2505 3.243724 AGAGGTTCTGCTACAGTTCCTT 58.756 45.455 11.96 3.94 36.50 3.36 R
2484 2825 0.036010 CGCCACTGGTTCCAATCTCT 60.036 55.000 0.00 0.00 0.00 3.10 R
3163 3516 0.324943 GCAGTTCAAGGCCTAGTCCA 59.675 55.000 5.16 0.00 0.00 4.02 R
3917 4271 0.443869 CGAGGTCAACAATGGAAGCG 59.556 55.000 0.00 0.00 0.00 4.68 R
4646 5000 0.461135 AGCAAGCACCAAAACAGTGG 59.539 50.000 0.00 0.00 44.92 4.00 R
5719 6073 0.970427 GTCAAATGGGGTGGCGGAAT 60.970 55.000 0.00 0.00 0.00 3.01 R
6929 7284 0.249073 CGTGCTCGAGGTATTGAGGG 60.249 60.000 15.58 0.00 37.42 4.30 R
8062 8426 0.179070 GTCTTCCTCATCCCGGCTTC 60.179 60.000 0.00 0.00 0.00 3.86 R
8834 26215 2.040359 TATGGCATGTCCCGGGGA 60.040 61.111 23.50 12.99 0.00 4.81 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 1.220749 GAATCTGGCACCGGCTGTA 59.779 57.895 0.00 0.00 40.87 2.74
48 49 3.429822 CGGCTGTAATCCGGTCTTTCTTA 60.430 47.826 0.00 0.00 42.99 2.10
59 60 3.660865 GGTCTTTCTTACTCGCCTGAAA 58.339 45.455 0.00 0.00 0.00 2.69
67 68 5.005740 TCTTACTCGCCTGAAACTGTACTA 58.994 41.667 0.00 0.00 0.00 1.82
128 129 2.620112 CGTGCTTGGCAGAGTTGGG 61.620 63.158 0.00 0.00 40.08 4.12
131 132 1.002134 GCTTGGCAGAGTTGGGCTA 60.002 57.895 0.00 0.00 0.00 3.93
144 147 3.118592 AGTTGGGCTAGAGATGCAGTTAC 60.119 47.826 0.00 0.00 0.00 2.50
152 155 2.695666 AGAGATGCAGTTACATACGGCT 59.304 45.455 0.00 0.00 46.49 5.52
166 169 1.006102 CGGCTCGTCCACTCAAGTT 60.006 57.895 0.00 0.00 34.01 2.66
167 170 0.600255 CGGCTCGTCCACTCAAGTTT 60.600 55.000 0.00 0.00 34.01 2.66
177 180 2.846827 CCACTCAAGTTTAGGGAGGGAT 59.153 50.000 0.00 0.00 33.92 3.85
178 181 3.267031 CCACTCAAGTTTAGGGAGGGATT 59.733 47.826 0.00 0.00 33.92 3.01
179 182 4.473559 CCACTCAAGTTTAGGGAGGGATTA 59.526 45.833 0.00 0.00 33.92 1.75
180 183 5.132816 CCACTCAAGTTTAGGGAGGGATTAT 59.867 44.000 0.00 0.00 33.92 1.28
181 184 6.353951 CCACTCAAGTTTAGGGAGGGATTATT 60.354 42.308 0.00 0.00 33.92 1.40
182 185 7.119387 CACTCAAGTTTAGGGAGGGATTATTT 58.881 38.462 0.00 0.00 33.92 1.40
183 186 7.615757 CACTCAAGTTTAGGGAGGGATTATTTT 59.384 37.037 0.00 0.00 33.92 1.82
184 187 7.834681 ACTCAAGTTTAGGGAGGGATTATTTTC 59.165 37.037 0.00 0.00 32.98 2.29
185 188 7.123383 TCAAGTTTAGGGAGGGATTATTTTCC 58.877 38.462 0.00 0.00 34.83 3.13
204 207 7.730364 TTTTCCTTAGCAACAAGTCTAAGAG 57.270 36.000 9.77 2.44 42.54 2.85
219 251 3.267860 GAGGCCGAGCAATCGCAG 61.268 66.667 0.00 0.00 42.27 5.18
226 258 1.131126 CCGAGCAATCGCAGACAAATT 59.869 47.619 0.00 0.00 42.51 1.82
233 265 1.603456 TCGCAGACAAATTTCCAGCA 58.397 45.000 0.00 0.00 0.00 4.41
234 266 1.536766 TCGCAGACAAATTTCCAGCAG 59.463 47.619 0.00 0.00 0.00 4.24
235 267 1.706443 GCAGACAAATTTCCAGCAGC 58.294 50.000 0.00 0.00 0.00 5.25
236 268 1.973138 CAGACAAATTTCCAGCAGCG 58.027 50.000 0.00 0.00 0.00 5.18
238 270 1.067199 GACAAATTTCCAGCAGCGCG 61.067 55.000 0.00 0.00 0.00 6.86
239 271 1.081242 CAAATTTCCAGCAGCGCGT 60.081 52.632 8.43 0.00 0.00 6.01
262 294 2.126424 GACTCCTGTCACGTCCGC 60.126 66.667 0.00 0.00 42.48 5.54
279 311 1.664151 CCGCGGTATTTCTTTCTGTCC 59.336 52.381 19.50 0.00 0.00 4.02
301 340 4.909305 CCTTTTTGTGTGTGTGCTTATACG 59.091 41.667 0.00 0.00 0.00 3.06
339 378 2.355481 GCAACTGCAAGGCACTGC 60.355 61.111 4.76 4.76 40.86 4.40
366 405 1.645034 CGTTTCAGATCGATGCCACT 58.355 50.000 0.54 0.00 0.00 4.00
367 406 1.590238 CGTTTCAGATCGATGCCACTC 59.410 52.381 0.54 0.00 0.00 3.51
368 407 2.736719 CGTTTCAGATCGATGCCACTCT 60.737 50.000 0.54 0.00 0.00 3.24
440 482 3.895102 TTGCGATTGCTGTTGCCGC 62.895 57.895 6.47 0.00 43.85 6.53
449 491 4.896028 TGTTGCCGCGCGTTGTTG 62.896 61.111 29.95 14.15 0.00 3.33
450 492 4.599434 GTTGCCGCGCGTTGTTGA 62.599 61.111 29.95 5.22 0.00 3.18
451 493 3.877357 TTGCCGCGCGTTGTTGAA 61.877 55.556 29.95 3.90 0.00 2.69
452 494 3.798639 TTGCCGCGCGTTGTTGAAG 62.799 57.895 29.95 11.72 0.00 3.02
494 542 1.601477 CCATGTGTCACAGGCTGCA 60.601 57.895 15.89 4.11 0.00 4.41
495 543 1.174078 CCATGTGTCACAGGCTGCAA 61.174 55.000 15.89 0.00 0.00 4.08
496 544 0.669619 CATGTGTCACAGGCTGCAAA 59.330 50.000 15.89 0.00 0.00 3.68
497 545 1.271379 CATGTGTCACAGGCTGCAAAT 59.729 47.619 15.89 2.23 0.00 2.32
498 546 1.401761 TGTGTCACAGGCTGCAAATT 58.598 45.000 15.89 0.00 0.00 1.82
576 643 1.593265 CCAATTTCTGGTGCAGGCC 59.407 57.895 0.00 0.00 40.78 5.19
588 666 1.071471 GCAGGCCGGTATGCTATGT 59.929 57.895 21.38 0.00 39.38 2.29
695 785 5.796350 CCTGTTTTCGGGTACTATTCTTG 57.204 43.478 0.00 0.00 41.26 3.02
698 788 6.348213 CCTGTTTTCGGGTACTATTCTTGTTG 60.348 42.308 0.00 0.00 41.26 3.33
700 790 3.255969 TCGGGTACTATTCTTGTTGCC 57.744 47.619 0.00 0.00 0.00 4.52
712 865 2.037902 TCTTGTTGCCACATTCTACCGA 59.962 45.455 0.00 0.00 31.06 4.69
721 874 4.615223 GCCACATTCTACCGAACCTTTTTC 60.615 45.833 0.00 0.00 30.67 2.29
725 878 5.297527 ACATTCTACCGAACCTTTTTCGTTT 59.702 36.000 5.75 0.00 40.04 3.60
730 883 4.862350 ACCGAACCTTTTTCGTTTATTGG 58.138 39.130 5.75 0.00 40.04 3.16
732 885 5.530543 ACCGAACCTTTTTCGTTTATTGGTA 59.469 36.000 5.75 0.00 40.04 3.25
760 914 8.792633 CATTGAGGTTGTAAATTCTTCTTGGTA 58.207 33.333 0.00 0.00 0.00 3.25
2036 2377 9.003658 GTATAGCAGTGATAAAATAAGCCATGT 57.996 33.333 0.00 0.00 0.00 3.21
2038 2379 7.880160 AGCAGTGATAAAATAAGCCATGTAA 57.120 32.000 0.00 0.00 0.00 2.41
2114 2455 9.199645 ACATATCTAGAGCAGACAATATAGCAT 57.800 33.333 0.00 0.00 35.62 3.79
2151 2492 6.814146 GCAATAGAGTCTAACATATGTAGGGC 59.186 42.308 9.21 6.63 0.00 5.19
2156 2497 7.220030 AGAGTCTAACATATGTAGGGCAAATG 58.780 38.462 9.21 0.00 0.00 2.32
2164 2505 3.712016 TGTAGGGCAAATGCTAGAACA 57.288 42.857 5.25 2.92 41.70 3.18
2172 2513 4.479619 GCAAATGCTAGAACAAGGAACTG 58.520 43.478 0.00 0.00 36.98 3.16
2185 2526 2.896039 AGGAACTGTAGCAGAACCTCT 58.104 47.619 2.91 0.00 36.53 3.69
2201 2542 6.384305 CAGAACCTCTAATAGAAAGGGGAGAA 59.616 42.308 0.00 0.00 36.64 2.87
2246 2587 3.927481 GAGGCACTGGACTTGGGGC 62.927 68.421 0.00 0.00 41.55 5.80
2280 2621 0.675837 TCGTCGAGGAGGTTGTCGAT 60.676 55.000 3.17 0.00 46.22 3.59
2290 2631 0.320946 GGTTGTCGATGTCGGGGAAA 60.321 55.000 2.25 0.00 40.29 3.13
2301 2642 0.734889 TCGGGGAAATAGTCGTCGTC 59.265 55.000 0.00 0.00 0.00 4.20
2317 2658 1.427020 GTCGGGGAAGTAGTCGTCG 59.573 63.158 0.00 0.00 0.00 5.12
2319 2660 2.768492 CGGGGAAGTAGTCGTCGGG 61.768 68.421 0.00 0.00 0.00 5.14
2323 2664 1.661498 GGAAGTAGTCGTCGGGGTCC 61.661 65.000 0.00 0.00 0.00 4.46
2417 2758 1.757682 TGACTCAAAAGGTGCGGTTT 58.242 45.000 0.00 0.00 0.00 3.27
2418 2759 2.096248 TGACTCAAAAGGTGCGGTTTT 58.904 42.857 0.00 0.00 0.00 2.43
2419 2760 2.159310 TGACTCAAAAGGTGCGGTTTTG 60.159 45.455 10.27 10.27 43.39 2.44
2438 2779 1.380112 GAGGCCTACTGTCCCGACT 60.380 63.158 4.42 0.00 0.00 4.18
2439 2780 1.380112 AGGCCTACTGTCCCGACTC 60.380 63.158 1.29 0.00 0.00 3.36
2441 2782 2.799371 CCTACTGTCCCGACTCGC 59.201 66.667 0.00 0.00 0.00 5.03
2472 2813 0.471617 CAAGCCGGGATGAGGAAGAT 59.528 55.000 2.18 0.00 0.00 2.40
2473 2814 1.694150 CAAGCCGGGATGAGGAAGATA 59.306 52.381 2.18 0.00 0.00 1.98
2474 2815 2.103153 AGCCGGGATGAGGAAGATAA 57.897 50.000 2.18 0.00 0.00 1.75
2475 2816 1.694696 AGCCGGGATGAGGAAGATAAC 59.305 52.381 2.18 0.00 0.00 1.89
2477 2818 2.548920 GCCGGGATGAGGAAGATAACAG 60.549 54.545 2.18 0.00 0.00 3.16
2478 2819 2.700897 CCGGGATGAGGAAGATAACAGT 59.299 50.000 0.00 0.00 0.00 3.55
2482 2823 4.591072 GGGATGAGGAAGATAACAGTAGCT 59.409 45.833 0.00 0.00 0.00 3.32
2483 2824 5.279256 GGGATGAGGAAGATAACAGTAGCTC 60.279 48.000 0.00 0.00 0.00 4.09
2484 2825 5.303078 GGATGAGGAAGATAACAGTAGCTCA 59.697 44.000 0.00 0.00 0.00 4.26
2486 2827 5.510430 TGAGGAAGATAACAGTAGCTCAGA 58.490 41.667 0.00 0.00 0.00 3.27
2487 2828 5.592282 TGAGGAAGATAACAGTAGCTCAGAG 59.408 44.000 0.00 0.00 0.00 3.35
2488 2829 5.761205 AGGAAGATAACAGTAGCTCAGAGA 58.239 41.667 0.00 0.00 0.00 3.10
2490 2831 6.838612 AGGAAGATAACAGTAGCTCAGAGATT 59.161 38.462 0.00 0.00 0.00 2.40
2491 2832 6.922957 GGAAGATAACAGTAGCTCAGAGATTG 59.077 42.308 0.00 0.00 0.00 2.67
2492 2833 6.403866 AGATAACAGTAGCTCAGAGATTGG 57.596 41.667 0.00 0.00 0.00 3.16
2493 2834 6.132658 AGATAACAGTAGCTCAGAGATTGGA 58.867 40.000 0.00 0.00 0.00 3.53
2494 2835 6.609212 AGATAACAGTAGCTCAGAGATTGGAA 59.391 38.462 0.00 0.00 0.00 3.53
2495 2836 4.464069 ACAGTAGCTCAGAGATTGGAAC 57.536 45.455 0.00 0.00 0.00 3.62
2496 2837 3.196685 ACAGTAGCTCAGAGATTGGAACC 59.803 47.826 0.00 0.00 0.00 3.62
2510 2855 1.671742 GAACCAGTGGCGAGAGGAA 59.328 57.895 9.78 0.00 0.00 3.36
2512 2857 1.831652 AACCAGTGGCGAGAGGAAGG 61.832 60.000 9.78 0.00 0.00 3.46
2516 2861 0.251832 AGTGGCGAGAGGAAGGAGAA 60.252 55.000 0.00 0.00 0.00 2.87
2517 2862 0.174617 GTGGCGAGAGGAAGGAGAAG 59.825 60.000 0.00 0.00 0.00 2.85
2525 2870 2.903135 AGAGGAAGGAGAAGTTCTGGTG 59.097 50.000 10.90 0.00 0.00 4.17
2527 2872 1.072331 GGAAGGAGAAGTTCTGGTGCA 59.928 52.381 10.90 0.00 0.00 4.57
2531 2876 3.445008 AGGAGAAGTTCTGGTGCATCTA 58.555 45.455 10.90 0.00 0.00 1.98
2562 2907 1.872653 GCGACCTCCCTTTTATAGGCG 60.873 57.143 0.00 0.00 43.27 5.52
2563 2908 1.872653 CGACCTCCCTTTTATAGGCGC 60.873 57.143 0.00 0.00 43.27 6.53
2607 2953 2.347490 GGAGCTGAAGGGAACGCA 59.653 61.111 0.00 0.00 0.00 5.24
2618 2964 0.391263 GGGAACGCAGGAGACGAAAT 60.391 55.000 0.00 0.00 0.00 2.17
2626 2972 1.734465 CAGGAGACGAAATGAACAGGC 59.266 52.381 0.00 0.00 0.00 4.85
2629 2975 1.734465 GAGACGAAATGAACAGGCAGG 59.266 52.381 0.00 0.00 0.00 4.85
2783 3136 4.794439 TCGTGACGAGGCATGGCG 62.794 66.667 14.30 2.89 0.00 5.69
2851 3204 4.256110 TGTTCTCATGCTCATACAAGTGG 58.744 43.478 0.00 0.00 0.00 4.00
2858 3211 2.642311 TGCTCATACAAGTGGGGAAAGA 59.358 45.455 0.00 0.00 0.00 2.52
2913 3266 4.910458 ACTAGCAATGTGGGACTAAACT 57.090 40.909 0.00 0.00 0.00 2.66
2934 3287 5.990668 ACTTTAGTAGTATCCCTTGCCTTG 58.009 41.667 0.00 0.00 34.56 3.61
2939 3292 1.285962 AGTATCCCTTGCCTTGCACAT 59.714 47.619 0.00 0.00 38.71 3.21
2955 3308 1.133823 CACATATGGGCTAAGTGGGCA 60.134 52.381 7.80 0.00 0.00 5.36
3031 3384 2.574074 AAATTCCAGCAATCCCCCAT 57.426 45.000 0.00 0.00 0.00 4.00
3048 3401 0.249784 CATCAGATCCCAGAGGCACG 60.250 60.000 0.00 0.00 0.00 5.34
3058 3411 1.269726 CCAGAGGCACGCAAAATTTGT 60.270 47.619 7.60 0.00 0.00 2.83
3075 3428 7.751768 AAATTTGTCTTTGGTTCCAAAACAA 57.248 28.000 23.78 23.78 36.47 2.83
3158 3511 4.566004 TGCTACACTAGTAAGCAACTTGG 58.434 43.478 23.06 0.00 39.80 3.61
3160 3513 4.626172 GCTACACTAGTAAGCAACTTGGAC 59.374 45.833 19.50 0.00 39.80 4.02
3163 3516 4.101119 ACACTAGTAAGCAACTTGGACAGT 59.899 41.667 0.00 0.00 39.80 3.55
3169 3522 2.047061 AGCAACTTGGACAGTGGACTA 58.953 47.619 0.00 0.00 35.12 2.59
3275 3628 2.693074 TGGAGCTTATGCGTCATACTCA 59.307 45.455 13.88 0.00 45.42 3.41
3296 3650 7.327214 ACTCAGAGACCTTTCATGATTTACTC 58.673 38.462 3.79 3.08 0.00 2.59
3304 3658 7.560368 ACCTTTCATGATTTACTCGAGAGAAT 58.440 34.615 21.68 17.36 41.32 2.40
3311 3665 9.004717 CATGATTTACTCGAGAGAATCCTACTA 57.995 37.037 26.91 16.68 41.32 1.82
3326 3680 5.547181 TCCTACTATCATAGATTGCGACG 57.453 43.478 0.00 0.00 0.00 5.12
3329 3683 5.795939 CCTACTATCATAGATTGCGACGTTC 59.204 44.000 0.00 0.00 0.00 3.95
3335 3689 4.629634 TCATAGATTGCGACGTTCAACAAT 59.370 37.500 6.37 6.25 35.52 2.71
3368 3722 2.030805 AGGTGCGTTCTTCAAAAGATGC 60.031 45.455 7.22 7.22 37.38 3.91
3394 3748 3.001414 CAGGACAACATCTCTGCTTCAG 58.999 50.000 0.00 0.00 0.00 3.02
3395 3749 2.636893 AGGACAACATCTCTGCTTCAGT 59.363 45.455 0.00 0.00 32.61 3.41
3401 3755 1.207570 CATCTCTGCTTCAGTGAGCCT 59.792 52.381 10.72 0.00 42.01 4.58
3433 3787 8.383318 ACACATTAAGATATACATCAACCTGC 57.617 34.615 0.00 0.00 33.21 4.85
3438 3792 4.330250 AGATATACATCAACCTGCCATGC 58.670 43.478 0.00 0.00 33.21 4.06
3442 3796 9.383354 AGATATACATCAACCTGCCATGCAGAT 62.383 40.741 17.21 0.00 45.07 2.90
3454 3808 4.061596 GCCATGCAGATTTAGGAGAGTAC 58.938 47.826 0.00 0.00 0.00 2.73
3482 3836 8.416329 GCATCTTCATGGAGTGGTATTTTTAAT 58.584 33.333 0.00 0.00 0.00 1.40
3502 3856 9.779951 TTTTAATAGTAAAGGTACTCTCCTCCT 57.220 33.333 0.00 0.00 41.06 3.69
3515 3869 3.772025 CTCTCCTCCTAGTTGACCAACAT 59.228 47.826 14.42 3.61 43.47 2.71
3538 3892 8.051535 ACATCTTGTCTTCCACATCTAATTCAT 58.948 33.333 0.00 0.00 33.90 2.57
3548 3902 4.934001 CACATCTAATTCATGGGATCTCCG 59.066 45.833 0.00 0.00 38.76 4.63
3567 3921 6.806751 TCTCCGATCACAAAGAATAGGTTAG 58.193 40.000 0.00 0.00 0.00 2.34
3570 3924 5.006746 CCGATCACAAAGAATAGGTTAGCAC 59.993 44.000 0.00 0.00 0.00 4.40
3580 3934 6.476378 AGAATAGGTTAGCACTGTGAACAAT 58.524 36.000 12.86 3.35 0.00 2.71
3633 3987 7.223582 CCCTCGATGCATTATCTATCACATTAC 59.776 40.741 0.00 0.00 33.44 1.89
3662 4016 5.033522 AGACCCTTAGTAAAAGGATCTGCT 58.966 41.667 0.00 0.00 38.86 4.24
3780 4134 5.564550 ACTTCATGTTATCCTTTGAGCTGT 58.435 37.500 0.00 0.00 0.00 4.40
3788 4142 6.017109 TGTTATCCTTTGAGCTGTTCACTTTC 60.017 38.462 0.00 0.00 34.94 2.62
3816 4170 6.993786 TTACAGTTTGATTGTCACAGTTCA 57.006 33.333 0.00 0.00 0.00 3.18
3832 4186 5.011738 CACAGTTCATAAGGATACCCGGTAT 59.988 44.000 10.02 10.02 37.58 2.73
3834 4188 6.436532 ACAGTTCATAAGGATACCCGGTATAG 59.563 42.308 10.22 0.00 37.58 1.31
3845 4199 3.175594 ACCCGGTATAGGTTTCTCAACA 58.824 45.455 0.00 0.00 32.05 3.33
3867 4221 0.449388 CGGCAAGTCATTCAAGAGCC 59.551 55.000 0.00 0.00 37.32 4.70
3869 4223 0.449388 GCAAGTCATTCAAGAGCCGG 59.551 55.000 0.00 0.00 0.00 6.13
3917 4271 4.677584 CTGTATCTAGTGCTGTGAGTTCC 58.322 47.826 0.00 0.00 0.00 3.62
3935 4289 0.804989 CCGCTTCCATTGTTGACCTC 59.195 55.000 0.00 0.00 0.00 3.85
3949 4303 3.868757 TGACCTCGTTAAGATGGTCTG 57.131 47.619 16.65 0.00 42.50 3.51
4002 4356 4.820897 TCCATGAGTGAATACATATCCGC 58.179 43.478 0.00 0.00 0.00 5.54
4005 4359 5.473039 CATGAGTGAATACATATCCGCTCA 58.527 41.667 4.16 4.16 34.58 4.26
4029 4383 3.752222 GGCCTTTATCTCATCAGCATCTG 59.248 47.826 0.00 0.00 0.00 2.90
4070 4424 0.555769 ACCCTTCAAGCACCTTTGGA 59.444 50.000 0.00 0.00 0.00 3.53
4076 4430 1.155859 AAGCACCTTTGGATGCCCA 59.844 52.632 0.00 0.00 43.12 5.36
4088 4442 3.979911 TGGATGCCCAATGTAGTGAATT 58.020 40.909 0.00 0.00 40.09 2.17
4178 4532 0.468226 TTGAGACAAACCGGCTCAGT 59.532 50.000 0.00 0.00 39.56 3.41
4188 4542 1.234821 CCGGCTCAGTTTGCTAACAA 58.765 50.000 13.46 0.43 36.70 2.83
4241 4595 5.699458 GGCTAAGTAAATAAGCGAGCCAATA 59.301 40.000 5.16 0.00 45.91 1.90
4244 4598 7.958025 GCTAAGTAAATAAGCGAGCCAATAATC 59.042 37.037 0.00 0.00 0.00 1.75
4283 4637 6.992063 TGGTCTCTAGCAATTCTTTGATTC 57.008 37.500 0.00 0.00 34.60 2.52
4322 4676 4.082665 AGCATCATATGGTGTTGGAGAG 57.917 45.455 17.18 0.00 39.92 3.20
4329 4683 1.973812 GGTGTTGGAGAGGGCTTGC 60.974 63.158 0.00 0.00 0.00 4.01
4337 4691 0.673022 GAGAGGGCTTGCAGTCACTG 60.673 60.000 0.00 0.00 34.12 3.66
4340 4694 0.987294 AGGGCTTGCAGTCACTGTAT 59.013 50.000 6.68 0.00 33.43 2.29
4373 4727 7.009179 ACTCAAGATCTTTTCCACATAGTGA 57.991 36.000 4.86 0.00 35.23 3.41
4403 4757 3.890756 GCAATGTAATCCCACCATCATCA 59.109 43.478 0.00 0.00 0.00 3.07
4412 4766 3.978672 TCCCACCATCATCATCTCTCAAT 59.021 43.478 0.00 0.00 0.00 2.57
4425 4779 7.761651 TCATCTCTCAATAACTTGATGTTCG 57.238 36.000 0.00 0.00 40.52 3.95
4433 4787 6.652900 TCAATAACTTGATGTTCGGAATGACA 59.347 34.615 0.00 0.00 39.89 3.58
4434 4788 7.336679 TCAATAACTTGATGTTCGGAATGACAT 59.663 33.333 0.00 0.00 39.89 3.06
4435 4789 5.551760 AACTTGATGTTCGGAATGACATC 57.448 39.130 12.30 12.30 36.49 3.06
4497 4851 7.525158 AGGAAATCCTTGACCTCCTTAATAA 57.475 36.000 0.00 0.00 46.09 1.40
4498 4852 8.119062 AGGAAATCCTTGACCTCCTTAATAAT 57.881 34.615 0.00 0.00 46.09 1.28
4558 4912 3.500343 ACAAGCAAAGCATAACTCCCTT 58.500 40.909 0.00 0.00 0.00 3.95
4569 4923 3.350163 CTCCCTTGCCCCCACCAT 61.350 66.667 0.00 0.00 0.00 3.55
4598 4952 3.494626 AGTACACACATTTGTCAGCTTCG 59.505 43.478 0.00 0.00 31.66 3.79
4614 4968 2.719798 CTTCGTTCACAACAAAGCCTG 58.280 47.619 0.00 0.00 0.00 4.85
4655 5009 3.003689 CGAACTTCTCATGCCACTGTTTT 59.996 43.478 0.00 0.00 0.00 2.43
4667 5021 2.100584 CCACTGTTTTGGTGCTTGCTTA 59.899 45.455 0.00 0.00 33.78 3.09
4757 5111 7.282224 TCTGGTTGTTCCATATAAATTTCCTCG 59.718 37.037 0.00 0.00 46.12 4.63
4842 5196 4.284746 AGGCAGCTAGTGAAAGTAGAACTT 59.715 41.667 0.00 0.00 42.59 2.66
4860 5214 4.442375 ACTTGAATAGTGGTCAGTCGAG 57.558 45.455 0.00 0.00 35.19 4.04
4886 5240 6.591834 CCACAGGTGAGTAAGTATCAAAGAAG 59.408 42.308 0.00 0.00 0.00 2.85
4927 5281 0.468226 TAACCCTTAGCCATGAGCCG 59.532 55.000 0.00 0.00 45.47 5.52
4938 5292 0.811616 CATGAGCCGAGCCTTGTACC 60.812 60.000 0.00 0.00 0.00 3.34
4943 5297 0.321298 GCCGAGCCTTGTACCTTTCA 60.321 55.000 0.00 0.00 0.00 2.69
4963 5317 6.569127 TTCAATAGTACCATCAGGCCTAAA 57.431 37.500 3.98 0.00 39.06 1.85
4996 5350 6.484288 TGAATACCCATTTGCATCCTATAGG 58.516 40.000 13.07 13.07 0.00 2.57
4998 5352 4.814224 ACCCATTTGCATCCTATAGGTT 57.186 40.909 18.51 7.64 36.34 3.50
5088 5442 2.972713 ACTGCTTCCTTCCAGTAGTCAA 59.027 45.455 0.00 0.00 40.30 3.18
5144 5498 6.560361 ACTGGGAGTGTCATCTATGAGATAT 58.440 40.000 0.00 0.00 37.51 1.63
5167 5521 9.807649 ATATACAAGAAAATCATCACCAAAAGC 57.192 29.630 0.00 0.00 0.00 3.51
5175 5529 2.036217 TCATCACCAAAAGCCTTTGCAG 59.964 45.455 2.03 0.00 40.61 4.41
5180 5534 1.413812 CCAAAAGCCTTTGCAGTCCTT 59.586 47.619 2.03 0.00 40.61 3.36
5190 5544 1.597742 TGCAGTCCTTTGTCTCTTGC 58.402 50.000 0.00 0.00 0.00 4.01
5196 5550 3.513515 AGTCCTTTGTCTCTTGCTCCTAG 59.486 47.826 0.00 0.00 0.00 3.02
5213 5567 6.174049 GCTCCTAGTAGGAACTTCATTGTTT 58.826 40.000 19.59 0.00 45.28 2.83
5225 5579 3.593442 TCATTGTTTTCCTCCACAGGT 57.407 42.857 0.00 0.00 41.28 4.00
5226 5580 3.909732 TCATTGTTTTCCTCCACAGGTT 58.090 40.909 0.00 0.00 41.28 3.50
5244 5598 4.739716 CAGGTTTTTCAAAGTGTTCCATCG 59.260 41.667 0.00 0.00 0.00 3.84
5259 5613 3.574284 CCATCGAAATGGCAAGTTCAA 57.426 42.857 12.92 0.00 45.88 2.69
5292 5646 5.129485 ACTGGTTCCTGATTCGATGAACTAT 59.871 40.000 10.59 0.00 37.74 2.12
5351 5705 8.743085 TCATGGGAAAGATATCTTCAAAGAAG 57.257 34.615 18.19 6.83 38.77 2.85
5469 5823 2.697751 CCCAGGAAAACACAATCCACAA 59.302 45.455 0.00 0.00 38.23 3.33
5471 5825 4.202346 CCCAGGAAAACACAATCCACAATT 60.202 41.667 0.00 0.00 38.23 2.32
5480 5834 4.064388 CACAATCCACAATTTTTGGTCCC 58.936 43.478 1.67 0.00 35.42 4.46
5483 5837 1.691434 TCCACAATTTTTGGTCCCAGC 59.309 47.619 1.67 0.00 35.42 4.85
5487 5841 2.368548 ACAATTTTTGGTCCCAGCTTCC 59.631 45.455 0.00 0.00 34.12 3.46
5504 5858 0.887933 TCCGCTTCTTTGGAATTGGC 59.112 50.000 0.00 0.00 0.00 4.52
5513 5867 3.006752 TCTTTGGAATTGGCACATTGACC 59.993 43.478 0.00 0.00 39.30 4.02
5516 5870 2.562298 TGGAATTGGCACATTGACCTTC 59.438 45.455 0.00 0.00 39.30 3.46
5531 5885 1.659794 CTTCGCCAAACAACCCCAG 59.340 57.895 0.00 0.00 0.00 4.45
5537 5891 0.753848 CCAAACAACCCCAGGTTCGT 60.754 55.000 0.00 0.00 43.05 3.85
5538 5892 1.477195 CCAAACAACCCCAGGTTCGTA 60.477 52.381 0.00 0.00 43.05 3.43
5543 5897 2.764572 ACAACCCCAGGTTCGTAGATAG 59.235 50.000 0.00 0.00 43.05 2.08
5549 5903 2.554893 CCAGGTTCGTAGATAGGAGAGC 59.445 54.545 0.00 0.00 35.04 4.09
5564 5918 8.044309 AGATAGGAGAGCTTTAACCTTTTCTTC 58.956 37.037 7.12 0.00 34.42 2.87
5612 5966 1.961793 TGTTCTTTGTGGGAACTCGG 58.038 50.000 7.85 0.00 42.27 4.63
5631 5985 3.449377 TCGGTTTAGGACATGACATGCTA 59.551 43.478 15.49 6.98 0.00 3.49
5701 6055 3.417101 ACATGGCGTTAACCAAATCAGA 58.583 40.909 0.00 0.00 44.65 3.27
5717 6071 6.697892 CCAAATCAGATAGAGTACGGTTCTTC 59.302 42.308 0.00 0.00 0.00 2.87
5719 6073 4.851843 TCAGATAGAGTACGGTTCTTCCA 58.148 43.478 0.00 0.00 35.57 3.53
5723 6077 3.889520 AGAGTACGGTTCTTCCATTCC 57.110 47.619 0.00 0.00 35.57 3.01
5745 6099 1.538047 CACCCCATTTGACTGAGGTG 58.462 55.000 0.00 0.00 38.89 4.00
5747 6101 1.780309 ACCCCATTTGACTGAGGTGAA 59.220 47.619 0.00 0.00 0.00 3.18
5756 6110 1.414550 GACTGAGGTGAATAGGGAGGC 59.585 57.143 0.00 0.00 0.00 4.70
5757 6111 0.390860 CTGAGGTGAATAGGGAGGCG 59.609 60.000 0.00 0.00 0.00 5.52
5791 6145 5.163602 GGATTATACCATGTTCCGCACAAAA 60.164 40.000 0.00 0.00 39.50 2.44
5792 6146 3.848272 ATACCATGTTCCGCACAAAAG 57.152 42.857 0.00 0.00 39.50 2.27
5794 6148 0.958091 CCATGTTCCGCACAAAAGGA 59.042 50.000 0.00 0.00 39.50 3.36
5831 6185 4.023980 AGAAATACTCTCCACCACGATCA 58.976 43.478 0.00 0.00 0.00 2.92
5849 6203 4.558496 CGATCAGACCTAAGCCTCTTGATC 60.558 50.000 0.00 0.00 0.00 2.92
5852 6206 4.780021 TCAGACCTAAGCCTCTTGATCTTT 59.220 41.667 0.00 0.00 0.00 2.52
5857 6211 5.104735 ACCTAAGCCTCTTGATCTTTCGATT 60.105 40.000 0.00 0.00 0.00 3.34
5871 6225 5.992729 TCTTTCGATTAAGTTGGTTTTCCG 58.007 37.500 0.00 0.00 44.36 4.30
5895 6249 7.041508 CCGCTTCAGCTTTATAGATCTTGAAAT 60.042 37.037 0.00 0.00 39.32 2.17
5934 6288 9.775854 CATCCTTAGATTTCAGAAGATACACAT 57.224 33.333 0.00 0.00 0.00 3.21
5936 6290 8.981659 TCCTTAGATTTCAGAAGATACACATGA 58.018 33.333 0.00 0.00 0.00 3.07
5954 6308 5.358160 CACATGACAGTATCTAGTGGAGTCA 59.642 44.000 0.00 0.00 38.67 3.41
5959 6313 6.836007 TGACAGTATCTAGTGGAGTCATCAAT 59.164 38.462 0.00 0.00 30.43 2.57
5962 6316 9.201989 ACAGTATCTAGTGGAGTCATCAATTAA 57.798 33.333 0.00 0.00 0.00 1.40
6006 6360 5.047021 TCACCTTTTGTCAAAACACCATTCA 60.047 36.000 6.65 0.00 34.35 2.57
6014 6368 5.809562 TGTCAAAACACCATTCATTTCACAC 59.190 36.000 0.00 0.00 0.00 3.82
6029 6383 8.205131 TCATTTCACACAGATCTGAATGTATG 57.795 34.615 29.27 24.98 0.00 2.39
6037 6391 8.412456 ACACAGATCTGAATGTATGAGTTCTAG 58.588 37.037 29.27 0.00 0.00 2.43
6056 6410 2.851195 AGTGGTGCAAGATTTCTCGTT 58.149 42.857 0.00 0.00 0.00 3.85
6066 6420 2.066262 GATTTCTCGTTTCCGCAGTCA 58.934 47.619 0.00 0.00 0.00 3.41
6080 6434 2.668556 CGCAGTCACATGAGACTTACGT 60.669 50.000 24.88 6.70 46.26 3.57
6113 6467 1.468127 TGCACACACACTTGACACTTG 59.532 47.619 0.00 0.00 0.00 3.16
6149 6503 6.715264 CAGTGGTGAAACTAGGGATTAAGTTT 59.285 38.462 0.36 0.36 45.99 2.66
6164 6518 5.752098 TTAAGTTTAACTTCGCTAGTCGC 57.248 39.130 14.03 0.00 39.51 5.19
6176 6530 0.735978 CTAGTCGCGACATGCAACCA 60.736 55.000 37.85 12.96 46.97 3.67
6196 6550 5.816919 ACCAAAGTTAACATGACAAAGACG 58.183 37.500 8.61 0.00 0.00 4.18
6228 6582 4.858692 ACACATTTGATTCGCTATTGTTGC 59.141 37.500 0.00 0.00 0.00 4.17
6283 6637 5.741011 TGATAAGGATAAACGAAACAGGCT 58.259 37.500 0.00 0.00 0.00 4.58
6425 6779 0.180171 CGGAGGGGACATAATGCACA 59.820 55.000 0.00 0.00 0.00 4.57
6429 6783 3.435601 GGAGGGGACATAATGCACATTCT 60.436 47.826 0.00 0.00 32.50 2.40
6431 6785 4.613437 AGGGGACATAATGCACATTCTTT 58.387 39.130 0.00 0.00 32.50 2.52
6468 6823 3.068307 CCCCGAAGTAACTTCAGATCGAT 59.932 47.826 0.00 0.00 40.17 3.59
6469 6824 4.291783 CCCGAAGTAACTTCAGATCGATC 58.708 47.826 17.91 17.91 40.17 3.69
6506 6861 0.663153 AGAAGCACTTGAACCGTTGC 59.337 50.000 0.00 0.00 0.00 4.17
6513 6868 0.523072 CTTGAACCGTTGCCCATCAG 59.477 55.000 0.00 0.00 0.00 2.90
6543 6898 0.824759 GTCCCTGCGGTCTGATAAGT 59.175 55.000 0.00 0.00 0.00 2.24
6544 6899 1.207329 GTCCCTGCGGTCTGATAAGTT 59.793 52.381 0.00 0.00 0.00 2.66
6589 6944 3.620427 ACATGCACATTAGAACCCGTA 57.380 42.857 0.00 0.00 0.00 4.02
6652 7007 3.008594 TGGGAAATATACCATACCCAGCG 59.991 47.826 0.00 0.00 41.76 5.18
6665 7020 0.742281 CCCAGCGTCCTTCATGTCAG 60.742 60.000 0.00 0.00 0.00 3.51
6672 7027 2.672478 CGTCCTTCATGTCAGTGTCTCC 60.672 54.545 0.00 0.00 0.00 3.71
6673 7028 2.300152 GTCCTTCATGTCAGTGTCTCCA 59.700 50.000 0.00 0.00 0.00 3.86
6674 7029 2.300152 TCCTTCATGTCAGTGTCTCCAC 59.700 50.000 0.00 0.00 42.17 4.02
6708 7063 3.752339 CTTGCCGCCTTTCCCAGC 61.752 66.667 0.00 0.00 0.00 4.85
6758 7113 0.842635 AGGAGCCCAATGATCAGGAC 59.157 55.000 0.09 0.00 0.00 3.85
6794 7149 4.210331 ACAAGCACCTTTCTTCTTGTCAT 58.790 39.130 0.00 0.00 43.80 3.06
6817 7172 3.866496 CTTCTTCTTGAAGTTCGTGTGC 58.134 45.455 9.80 0.00 45.26 4.57
6820 7175 0.937304 TCTTGAAGTTCGTGTGCTGC 59.063 50.000 0.00 0.00 0.00 5.25
6822 7177 0.657312 TTGAAGTTCGTGTGCTGCAG 59.343 50.000 10.11 10.11 0.00 4.41
6824 7179 0.937304 GAAGTTCGTGTGCTGCAGAA 59.063 50.000 20.43 2.96 0.00 3.02
6827 7182 1.153269 TTCGTGTGCTGCAGAACCA 60.153 52.632 22.51 9.23 0.00 3.67
6844 7199 4.524328 AGAACCATGTTCTTCCCATCAAAC 59.476 41.667 3.71 0.00 0.00 2.93
6861 7216 6.705381 CCATCAAACTTTGCTTTACCATCAAA 59.295 34.615 0.00 0.00 0.00 2.69
6868 7223 2.961741 TGCTTTACCATCAAACTTGCCA 59.038 40.909 0.00 0.00 0.00 4.92
6871 7226 5.244851 TGCTTTACCATCAAACTTGCCATTA 59.755 36.000 0.00 0.00 0.00 1.90
6888 7243 4.381932 GCCATTATTCTTGAACTTGTGGGG 60.382 45.833 0.00 0.00 0.00 4.96
6898 7253 0.178990 ACTTGTGGGGCTGGAAGTTC 60.179 55.000 0.00 0.00 35.30 3.01
6925 7280 4.093743 TCTGTACCAGATTGGCACTAGAA 58.906 43.478 0.00 0.00 42.67 2.10
6926 7281 4.081642 TCTGTACCAGATTGGCACTAGAAC 60.082 45.833 0.00 0.00 42.67 3.01
6929 7284 2.237392 ACCAGATTGGCACTAGAACCTC 59.763 50.000 0.00 0.00 42.67 3.85
6944 7299 2.074729 ACCTCCCTCAATACCTCGAG 57.925 55.000 5.13 5.13 0.00 4.04
6949 7304 0.738975 CCTCAATACCTCGAGCACGA 59.261 55.000 6.99 6.00 46.56 4.35
7003 7358 3.314307 AGAGTACCAATGAGATCCGGA 57.686 47.619 6.61 6.61 0.00 5.14
7034 7389 2.093288 TCCTGCCTCTTATGCTTCAGTG 60.093 50.000 0.00 0.00 0.00 3.66
7054 7409 2.038557 TGAGGTAGCAAAGTTCCTCCAC 59.961 50.000 7.46 0.00 43.91 4.02
7056 7411 1.270678 GGTAGCAAAGTTCCTCCACGT 60.271 52.381 0.00 0.00 0.00 4.49
7057 7412 1.798813 GTAGCAAAGTTCCTCCACGTG 59.201 52.381 9.08 9.08 0.00 4.49
7081 7436 4.591072 GGAGGAAGCTTAGTGATGATACCT 59.409 45.833 0.00 0.00 0.00 3.08
7083 7438 4.591072 AGGAAGCTTAGTGATGATACCTCC 59.409 45.833 0.00 0.00 0.00 4.30
7089 7444 2.050144 AGTGATGATACCTCCGGCAAT 58.950 47.619 0.00 0.00 0.00 3.56
7156 7511 4.815308 GCAAATGACTGTATCTCATGAGCT 59.185 41.667 18.36 11.26 31.18 4.09
7164 7519 5.032327 TGTATCTCATGAGCTTGCTCAAT 57.968 39.130 26.00 17.73 36.88 2.57
7172 7527 5.499315 ATGAGCTTGCTCAATCACGGAGT 62.499 47.826 26.00 6.58 38.02 3.85
7192 7547 3.446873 AGTGCTCTTCAGTCATCCTGTAG 59.553 47.826 0.00 0.00 42.19 2.74
7228 7583 0.975887 TGATGTACAGCTCAGTGCCA 59.024 50.000 13.05 0.00 44.23 4.92
7230 7585 0.392193 ATGTACAGCTCAGTGCCAGC 60.392 55.000 0.33 0.00 44.23 4.85
7240 7595 1.986757 AGTGCCAGCATCCGAGACT 60.987 57.895 0.00 0.00 0.00 3.24
7261 7616 1.148273 AAACTTGGCCTCGAGTGCA 59.852 52.632 22.04 9.78 37.67 4.57
7282 7637 6.265196 GTGCATCCCACATATCTTTTCCATTA 59.735 38.462 0.00 0.00 44.06 1.90
7345 7700 3.434984 CACTCAAGAGAGCAGCCTTAAAC 59.565 47.826 3.73 0.00 46.09 2.01
7362 7717 8.113462 AGCCTTAAACAAGGTATCCATTTTCTA 58.887 33.333 5.38 0.00 42.00 2.10
7363 7718 8.745590 GCCTTAAACAAGGTATCCATTTTCTAA 58.254 33.333 5.38 0.00 42.00 2.10
7415 7771 2.575532 CTTCAGGTTTGCAAGAGTGGA 58.424 47.619 0.00 0.00 0.00 4.02
7425 7781 2.093816 TGCAAGAGTGGAGTCATAGCAG 60.094 50.000 0.00 0.00 0.00 4.24
7434 7790 2.547642 GGAGTCATAGCAGCTCATGGTC 60.548 54.545 0.00 3.12 40.89 4.02
7436 7792 2.102757 AGTCATAGCAGCTCATGGTCTG 59.897 50.000 0.00 9.76 40.89 3.51
7484 7840 5.986501 CACCTCTTATAGTGGATACCCTC 57.013 47.826 2.08 0.00 33.31 4.30
7501 7857 3.444703 CCTCAAACATAGGAGGTCTCG 57.555 52.381 0.00 0.00 44.59 4.04
7519 7875 0.594796 CGTGGAAGCAGCAAAACCAC 60.595 55.000 15.58 15.58 44.90 4.16
7523 7879 0.040067 GAAGCAGCAAAACCACTCGG 60.040 55.000 0.00 0.00 38.77 4.63
7590 7946 8.854979 TGAGCAATTTACCGAATGATTTTATG 57.145 30.769 0.00 0.00 0.00 1.90
7616 7972 9.331282 GAACAGAAATACTAGATAAAGCATGGT 57.669 33.333 0.00 0.00 0.00 3.55
7651 8007 7.113965 CAGTGATAAAATAAGCCATGCGATTTC 59.886 37.037 0.00 0.00 31.41 2.17
7709 8065 9.399797 TGAACCGTAACTAAACATATCTAGAGA 57.600 33.333 0.00 0.00 0.00 3.10
7785 8141 7.281100 GCAAATGCTAGAACAAGGAACTATAGT 59.719 37.037 0.00 0.00 36.03 2.12
7993 8356 2.906354 CTCCCCAGAAACCTTATCACG 58.094 52.381 0.00 0.00 0.00 4.35
8086 8450 1.003118 CCGGGATGAGGAAGACAACAA 59.997 52.381 0.00 0.00 0.00 2.83
8119 8487 1.671742 GAACCAGTGGCGAGAGGAA 59.328 57.895 9.78 0.00 0.00 3.36
8120 8488 0.390472 GAACCAGTGGCGAGAGGAAG 60.390 60.000 9.78 0.00 0.00 3.46
8121 8489 1.831652 AACCAGTGGCGAGAGGAAGG 61.832 60.000 9.78 0.00 0.00 3.46
8171 8542 2.504175 AGCGACCTTCCTTTTATAGGCA 59.496 45.455 0.00 0.00 44.37 4.75
8311 14300 1.048601 AGCTTCCGAGTGACCTTTCA 58.951 50.000 0.00 0.00 0.00 2.69
8328 14317 4.022935 CCTTTCATATACCCGTAGTGCGTA 60.023 45.833 0.00 0.00 39.32 4.42
8357 14356 1.788229 TAGACATCGGCTCATTCCCA 58.212 50.000 0.00 0.00 0.00 4.37
8359 14358 1.153369 ACATCGGCTCATTCCCACG 60.153 57.895 0.00 0.00 0.00 4.94
8360 14359 2.203070 ATCGGCTCATTCCCACGC 60.203 61.111 0.00 0.00 0.00 5.34
8362 14361 4.776322 CGGCTCATTCCCACGCCA 62.776 66.667 0.00 0.00 42.59 5.69
8484 25801 1.470098 CCACTCAACTAGCAATGTGGC 59.530 52.381 11.03 0.00 38.49 5.01
8711 26092 5.472820 ACACAGAAAGTTACTAGTAGCGAGT 59.527 40.000 10.65 4.52 0.00 4.18
8955 26338 1.955080 GGTGCCATAGTAGTAGCGAGT 59.045 52.381 0.00 0.00 0.00 4.18
9004 26390 3.762288 GGTCCCATTTTCAAACTCTACCC 59.238 47.826 0.00 0.00 0.00 3.69
9028 26415 1.438651 CGAGTGGATCGCCTTTTCAA 58.561 50.000 0.00 0.00 45.98 2.69
9109 26504 6.140377 TCCCATGTGATATGTGGTCTAGTTA 58.860 40.000 0.00 0.00 0.00 2.24
9257 26652 6.330278 ACTCGAGAATTGTTCGACATCATAA 58.670 36.000 21.68 0.00 41.68 1.90
9330 26725 2.108168 TCTGAACAATACCGGAGAGGG 58.892 52.381 9.46 0.00 46.96 4.30
9646 27041 5.640357 GGTGTAAAGTACAACATCGAATCCA 59.360 40.000 0.00 0.00 45.57 3.41
9648 27043 7.493320 GGTGTAAAGTACAACATCGAATCCATA 59.507 37.037 0.00 0.00 45.57 2.74
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 3.535561 CGGTGCCAGATTCTACAGAATT 58.464 45.455 5.95 0.00 44.14 2.17
20 21 2.270850 GGATTACAGCCGGTGCCA 59.729 61.111 1.90 0.00 38.69 4.92
21 22 2.895372 CGGATTACAGCCGGTGCC 60.895 66.667 1.90 0.00 44.87 5.01
33 34 2.418334 GGCGAGTAAGAAAGACCGGATT 60.418 50.000 9.46 0.00 0.00 3.01
48 49 3.418995 TCTAGTACAGTTTCAGGCGAGT 58.581 45.455 0.00 0.00 0.00 4.18
59 60 2.295885 CGGACCCGAATCTAGTACAGT 58.704 52.381 1.54 0.00 42.83 3.55
67 68 1.745320 CGGATTCCGGACCCGAATCT 61.745 60.000 30.51 2.76 45.58 2.40
118 119 1.809651 GCATCTCTAGCCCAACTCTGC 60.810 57.143 0.00 0.00 0.00 4.26
128 129 4.230657 CCGTATGTAACTGCATCTCTAGC 58.769 47.826 0.00 0.00 0.00 3.42
131 132 2.695666 AGCCGTATGTAACTGCATCTCT 59.304 45.455 0.00 0.00 40.51 3.10
144 147 0.172578 TTGAGTGGACGAGCCGTATG 59.827 55.000 0.09 0.00 41.37 2.39
152 155 2.561419 CTCCCTAAACTTGAGTGGACGA 59.439 50.000 0.00 0.00 0.00 4.20
166 169 6.391649 TGCTAAGGAAAATAATCCCTCCCTAA 59.608 38.462 0.00 0.00 40.59 2.69
167 170 5.914716 TGCTAAGGAAAATAATCCCTCCCTA 59.085 40.000 0.00 0.00 40.59 3.53
177 180 9.787435 TCTTAGACTTGTTGCTAAGGAAAATAA 57.213 29.630 0.00 0.00 42.30 1.40
178 181 9.436957 CTCTTAGACTTGTTGCTAAGGAAAATA 57.563 33.333 0.00 0.00 42.30 1.40
179 182 7.391833 CCTCTTAGACTTGTTGCTAAGGAAAAT 59.608 37.037 0.00 0.00 42.30 1.82
180 183 6.710744 CCTCTTAGACTTGTTGCTAAGGAAAA 59.289 38.462 0.00 0.00 42.30 2.29
181 184 6.231211 CCTCTTAGACTTGTTGCTAAGGAAA 58.769 40.000 0.00 0.00 42.30 3.13
182 185 5.794894 CCTCTTAGACTTGTTGCTAAGGAA 58.205 41.667 0.00 0.00 42.30 3.36
183 186 4.322801 GCCTCTTAGACTTGTTGCTAAGGA 60.323 45.833 0.00 0.00 42.30 3.36
184 187 3.935828 GCCTCTTAGACTTGTTGCTAAGG 59.064 47.826 0.00 0.00 42.30 2.69
185 188 3.935828 GGCCTCTTAGACTTGTTGCTAAG 59.064 47.826 0.00 0.00 43.01 2.18
204 207 3.567797 GTCTGCGATTGCTCGGCC 61.568 66.667 6.47 0.00 45.15 6.13
219 251 1.067199 CGCGCTGCTGGAAATTTGTC 61.067 55.000 5.56 0.00 0.00 3.18
255 287 1.067354 AGAAAGAAATACCGCGGACGT 60.067 47.619 35.90 12.99 37.70 4.34
261 293 5.372547 AAAAGGACAGAAAGAAATACCGC 57.627 39.130 0.00 0.00 0.00 5.68
262 294 6.636850 CACAAAAAGGACAGAAAGAAATACCG 59.363 38.462 0.00 0.00 0.00 4.02
279 311 5.395195 CACGTATAAGCACACACACAAAAAG 59.605 40.000 0.00 0.00 0.00 2.27
301 340 4.515191 TGCAGTTTCAGGATCAAGTAACAC 59.485 41.667 0.00 0.00 0.00 3.32
339 378 1.699656 CGATCTGAAACGCAGGCAGG 61.700 60.000 0.00 0.00 44.98 4.85
366 405 5.125417 GCAGCCCAACACATAAATTAGAAGA 59.875 40.000 0.00 0.00 0.00 2.87
367 406 5.343249 GCAGCCCAACACATAAATTAGAAG 58.657 41.667 0.00 0.00 0.00 2.85
368 407 4.159506 GGCAGCCCAACACATAAATTAGAA 59.840 41.667 0.00 0.00 0.00 2.10
440 482 3.362014 CGGATGATATCTTCAACAACGCG 60.362 47.826 17.64 3.53 38.03 6.01
441 483 3.802139 TCGGATGATATCTTCAACAACGC 59.198 43.478 17.64 1.34 38.03 4.84
442 484 4.209288 GGTCGGATGATATCTTCAACAACG 59.791 45.833 17.64 12.20 38.03 4.10
443 485 5.116180 TGGTCGGATGATATCTTCAACAAC 58.884 41.667 17.64 10.38 38.03 3.32
445 487 4.740634 GCTGGTCGGATGATATCTTCAACA 60.741 45.833 17.64 8.21 38.03 3.33
446 488 3.743396 GCTGGTCGGATGATATCTTCAAC 59.257 47.826 17.64 14.39 38.03 3.18
447 489 3.643320 AGCTGGTCGGATGATATCTTCAA 59.357 43.478 17.64 5.26 38.03 2.69
449 491 3.951775 AGCTGGTCGGATGATATCTTC 57.048 47.619 9.59 9.59 0.00 2.87
450 492 5.808366 TTAAGCTGGTCGGATGATATCTT 57.192 39.130 3.98 0.00 0.00 2.40
451 493 6.365970 AATTAAGCTGGTCGGATGATATCT 57.634 37.500 3.98 0.00 0.00 1.98
452 494 6.092807 GGAAATTAAGCTGGTCGGATGATATC 59.907 42.308 0.00 0.00 0.00 1.63
494 542 6.555315 CCGCAGCTACAAGATTCTTTAATTT 58.445 36.000 0.00 0.00 0.00 1.82
495 543 5.449177 GCCGCAGCTACAAGATTCTTTAATT 60.449 40.000 0.00 0.00 35.50 1.40
496 544 4.035675 GCCGCAGCTACAAGATTCTTTAAT 59.964 41.667 0.00 0.00 35.50 1.40
497 545 3.374058 GCCGCAGCTACAAGATTCTTTAA 59.626 43.478 0.00 0.00 35.50 1.52
498 546 2.936498 GCCGCAGCTACAAGATTCTTTA 59.064 45.455 0.00 0.00 35.50 1.85
523 580 0.394565 AAGCACGAACTGAAGCCTCT 59.605 50.000 0.00 0.00 0.00 3.69
524 581 1.195674 GAAAGCACGAACTGAAGCCTC 59.804 52.381 0.00 0.00 0.00 4.70
525 582 1.230324 GAAAGCACGAACTGAAGCCT 58.770 50.000 0.00 0.00 0.00 4.58
569 636 1.071299 CATAGCATACCGGCCTGCA 59.929 57.895 25.52 14.59 40.88 4.41
570 637 0.535102 AACATAGCATACCGGCCTGC 60.535 55.000 18.55 18.55 38.69 4.85
571 638 1.873591 GAAACATAGCATACCGGCCTG 59.126 52.381 0.00 0.00 0.00 4.85
572 639 1.768870 AGAAACATAGCATACCGGCCT 59.231 47.619 0.00 0.00 0.00 5.19
573 640 2.143925 GAGAAACATAGCATACCGGCC 58.856 52.381 0.00 0.00 0.00 6.13
576 643 5.460419 GTGAAGAGAGAAACATAGCATACCG 59.540 44.000 0.00 0.00 0.00 4.02
588 666 3.648067 AGGATGTGTGGTGAAGAGAGAAA 59.352 43.478 0.00 0.00 0.00 2.52
695 785 1.467342 GGTTCGGTAGAATGTGGCAAC 59.533 52.381 0.00 0.00 38.80 4.17
698 788 2.109425 AAGGTTCGGTAGAATGTGGC 57.891 50.000 0.00 0.00 38.80 5.01
700 790 4.212636 ACGAAAAAGGTTCGGTAGAATGTG 59.787 41.667 12.55 0.00 45.34 3.21
712 865 6.712179 TGGTACCAATAAACGAAAAAGGTT 57.288 33.333 13.60 0.00 0.00 3.50
760 914 6.038356 GCACAATAGCTGCATTTGATTAAGT 58.962 36.000 17.73 0.85 34.56 2.24
2037 2378 8.527810 TGTTGTTTACCTTCTCTTTGTCAAATT 58.472 29.630 0.00 0.00 0.00 1.82
2038 2379 8.062065 TGTTGTTTACCTTCTCTTTGTCAAAT 57.938 30.769 0.00 0.00 0.00 2.32
2127 2468 7.896811 TGCCCTACATATGTTAGACTCTATTG 58.103 38.462 14.77 0.00 0.00 1.90
2145 2486 3.378427 CCTTGTTCTAGCATTTGCCCTAC 59.622 47.826 0.00 0.00 43.38 3.18
2151 2492 5.695851 ACAGTTCCTTGTTCTAGCATTTG 57.304 39.130 0.00 0.00 0.00 2.32
2156 2497 3.926616 TGCTACAGTTCCTTGTTCTAGC 58.073 45.455 0.00 0.00 33.08 3.42
2164 2505 3.243724 AGAGGTTCTGCTACAGTTCCTT 58.756 45.455 11.96 3.94 36.50 3.36
2172 2513 6.463190 CCCCTTTCTATTAGAGGTTCTGCTAC 60.463 46.154 0.00 0.00 0.00 3.58
2185 2526 5.750352 ACGTGTTTCTCCCCTTTCTATTA 57.250 39.130 0.00 0.00 0.00 0.98
2201 2542 1.068125 TGCTGCTATCACGTACGTGTT 60.068 47.619 38.70 33.65 45.55 3.32
2213 2554 2.042404 GCCTCTGCTCCTGCTGCTAT 62.042 60.000 0.00 0.00 40.48 2.97
2214 2555 2.729479 GCCTCTGCTCCTGCTGCTA 61.729 63.158 0.00 0.00 40.48 3.49
2246 2587 2.184322 CGACATGGAGGACACCGG 59.816 66.667 0.00 0.00 0.00 5.28
2280 2621 0.452987 CGACGACTATTTCCCCGACA 59.547 55.000 0.00 0.00 0.00 4.35
2290 2631 0.393537 ACTTCCCCGACGACGACTAT 60.394 55.000 9.28 0.00 42.66 2.12
2301 2642 2.768492 CCCGACGACTACTTCCCCG 61.768 68.421 0.00 0.00 0.00 5.73
2325 2666 1.079405 TTCTTCGTCACGGATGCCC 60.079 57.895 0.00 0.00 0.00 5.36
2329 2670 1.887198 ACTGACTTCTTCGTCACGGAT 59.113 47.619 0.00 0.00 38.89 4.18
2337 2678 1.525596 CGCGACTACTGACTTCTTCG 58.474 55.000 0.00 0.00 0.00 3.79
2364 2705 3.096852 GGGTGATAAGGTTTTTGGGGAG 58.903 50.000 0.00 0.00 0.00 4.30
2417 2758 1.987855 CGGGACAGTAGGCCTCCAA 60.988 63.158 9.68 0.00 0.00 3.53
2418 2759 2.363795 CGGGACAGTAGGCCTCCA 60.364 66.667 9.68 0.00 0.00 3.86
2419 2760 2.043248 TCGGGACAGTAGGCCTCC 60.043 66.667 9.68 3.29 0.00 4.30
2461 2802 6.264292 TCTGAGCTACTGTTATCTTCCTCATC 59.736 42.308 0.00 0.00 0.00 2.92
2472 2813 5.105310 GGTTCCAATCTCTGAGCTACTGTTA 60.105 44.000 0.00 0.00 0.00 2.41
2473 2814 4.323104 GGTTCCAATCTCTGAGCTACTGTT 60.323 45.833 0.00 0.00 0.00 3.16
2474 2815 3.196685 GGTTCCAATCTCTGAGCTACTGT 59.803 47.826 0.00 0.00 0.00 3.55
2475 2816 3.196469 TGGTTCCAATCTCTGAGCTACTG 59.804 47.826 0.00 0.00 0.00 2.74
2477 2818 3.196685 ACTGGTTCCAATCTCTGAGCTAC 59.803 47.826 0.00 0.00 0.00 3.58
2478 2819 3.196469 CACTGGTTCCAATCTCTGAGCTA 59.804 47.826 0.00 0.00 0.00 3.32
2482 2823 1.003580 GCCACTGGTTCCAATCTCTGA 59.996 52.381 0.00 0.00 0.00 3.27
2483 2824 1.457346 GCCACTGGTTCCAATCTCTG 58.543 55.000 0.00 0.00 0.00 3.35
2484 2825 0.036010 CGCCACTGGTTCCAATCTCT 60.036 55.000 0.00 0.00 0.00 3.10
2486 2827 0.036010 CTCGCCACTGGTTCCAATCT 60.036 55.000 0.00 0.00 0.00 2.40
2487 2828 0.036388 TCTCGCCACTGGTTCCAATC 60.036 55.000 0.00 0.00 0.00 2.67
2488 2829 0.036010 CTCTCGCCACTGGTTCCAAT 60.036 55.000 0.00 0.00 0.00 3.16
2490 2831 2.583441 CCTCTCGCCACTGGTTCCA 61.583 63.158 0.00 0.00 0.00 3.53
2491 2832 1.827399 TTCCTCTCGCCACTGGTTCC 61.827 60.000 0.00 0.00 0.00 3.62
2492 2833 0.390472 CTTCCTCTCGCCACTGGTTC 60.390 60.000 0.00 0.00 0.00 3.62
2493 2834 1.674057 CTTCCTCTCGCCACTGGTT 59.326 57.895 0.00 0.00 0.00 3.67
2494 2835 2.286523 CCTTCCTCTCGCCACTGGT 61.287 63.158 0.00 0.00 0.00 4.00
2495 2836 1.954362 CTCCTTCCTCTCGCCACTGG 61.954 65.000 0.00 0.00 0.00 4.00
2496 2837 0.967887 TCTCCTTCCTCTCGCCACTG 60.968 60.000 0.00 0.00 0.00 3.66
2510 2855 2.264455 AGATGCACCAGAACTTCTCCT 58.736 47.619 0.00 0.00 0.00 3.69
2512 2857 5.049167 CAGATAGATGCACCAGAACTTCTC 58.951 45.833 0.00 0.00 0.00 2.87
2516 2861 4.285020 TCTCAGATAGATGCACCAGAACT 58.715 43.478 0.00 0.00 0.00 3.01
2517 2862 4.501229 CCTCTCAGATAGATGCACCAGAAC 60.501 50.000 0.00 0.00 32.41 3.01
2525 2870 2.095263 GTCGCTCCTCTCAGATAGATGC 60.095 54.545 0.00 0.00 32.41 3.91
2527 2872 2.375174 AGGTCGCTCCTCTCAGATAGAT 59.625 50.000 0.00 0.00 44.42 1.98
2562 2907 0.179113 CCTCTCGCTCCTTCTCTTGC 60.179 60.000 0.00 0.00 0.00 4.01
2563 2908 0.179113 GCCTCTCGCTCCTTCTCTTG 60.179 60.000 0.00 0.00 0.00 3.02
2607 2953 1.347707 TGCCTGTTCATTTCGTCTCCT 59.652 47.619 0.00 0.00 0.00 3.69
2641 2987 3.913573 CTGAATCCGAACGGCGCG 61.914 66.667 6.90 0.00 39.11 6.86
2643 2989 1.683790 GACACTGAATCCGAACGGCG 61.684 60.000 4.80 4.80 40.47 6.46
2686 3034 2.684881 GGGTATACGAAAGGTCACTCGA 59.315 50.000 0.00 0.00 38.43 4.04
2725 3073 2.289072 CGGGAATGAGCCGATGTCTAAT 60.289 50.000 0.00 0.00 0.00 1.73
2814 3167 1.276421 AGAACAAGAGGGACATCCACG 59.724 52.381 0.00 0.00 38.24 4.94
2826 3179 5.640783 CACTTGTATGAGCATGAGAACAAGA 59.359 40.000 21.53 0.00 44.03 3.02
2913 3266 4.226394 TGCAAGGCAAGGGATACTACTAAA 59.774 41.667 0.00 0.00 34.76 1.85
2934 3287 1.609208 CCCACTTAGCCCATATGTGC 58.391 55.000 1.40 1.40 37.92 4.57
2939 3292 1.819753 AGATGCCCACTTAGCCCATA 58.180 50.000 0.00 0.00 0.00 2.74
3031 3384 2.725312 GCGTGCCTCTGGGATCTGA 61.725 63.158 0.00 0.00 33.58 3.27
3048 3401 5.809719 TTGGAACCAAAGACAAATTTTGC 57.190 34.783 9.04 2.76 34.88 3.68
3075 3428 8.362639 CCACTGTAGTACCGGTATATAAAACAT 58.637 37.037 19.19 0.00 0.00 2.71
3095 3448 6.576442 AAGTTCAACTTAACAGTCTCCACTGT 60.576 38.462 0.00 1.81 46.99 3.55
3158 3511 1.267121 TCAAGGCCTAGTCCACTGTC 58.733 55.000 5.16 0.00 0.00 3.51
3160 3513 1.625818 AGTTCAAGGCCTAGTCCACTG 59.374 52.381 5.16 0.00 0.00 3.66
3163 3516 0.324943 GCAGTTCAAGGCCTAGTCCA 59.675 55.000 5.16 0.00 0.00 4.02
3249 3602 3.272334 CGCATAAGCTCCACCCGC 61.272 66.667 0.00 0.00 39.10 6.13
3275 3628 6.378564 TCTCGAGTAAATCATGAAAGGTCTCT 59.621 38.462 13.13 0.00 0.00 3.10
3296 3650 8.128582 GCAATCTATGATAGTAGGATTCTCTCG 58.871 40.741 0.00 0.00 0.00 4.04
3304 3658 5.001874 ACGTCGCAATCTATGATAGTAGGA 58.998 41.667 0.00 0.00 0.00 2.94
3311 3665 4.180817 TGTTGAACGTCGCAATCTATGAT 58.819 39.130 7.02 0.00 0.00 2.45
3326 3680 7.254590 GCACCTATATGAGTCTGATTGTTGAAC 60.255 40.741 0.00 0.00 0.00 3.18
3329 3683 5.176406 CGCACCTATATGAGTCTGATTGTTG 59.824 44.000 0.00 0.00 0.00 3.33
3335 3689 4.207955 AGAACGCACCTATATGAGTCTGA 58.792 43.478 0.00 0.00 30.69 3.27
3368 3722 2.619147 CAGAGATGTTGTCCTGCAGAG 58.381 52.381 17.39 5.49 0.00 3.35
3394 3748 6.398918 TCTTAATGTGTTCTAAGAGGCTCAC 58.601 40.000 18.26 6.12 31.90 3.51
3395 3749 6.605471 TCTTAATGTGTTCTAAGAGGCTCA 57.395 37.500 18.26 0.00 31.90 4.26
3433 3787 5.295950 CAGTACTCTCCTAAATCTGCATGG 58.704 45.833 0.00 0.00 0.00 3.66
3438 3792 6.403866 AGATGCAGTACTCTCCTAAATCTG 57.596 41.667 0.00 0.00 0.00 2.90
3442 3796 6.407412 CCATGAAGATGCAGTACTCTCCTAAA 60.407 42.308 0.00 0.00 0.00 1.85
3454 3808 2.414994 ACCACTCCATGAAGATGCAG 57.585 50.000 0.00 0.00 0.00 4.41
3482 3836 7.183475 TCAACTAGGAGGAGAGTACCTTTACTA 59.817 40.741 0.00 0.00 38.77 1.82
3488 3842 3.053470 GGTCAACTAGGAGGAGAGTACCT 60.053 52.174 0.00 0.00 43.64 3.08
3490 3844 3.965694 TGGTCAACTAGGAGGAGAGTAC 58.034 50.000 0.00 0.00 0.00 2.73
3502 3856 5.163248 TGGAAGACAAGATGTTGGTCAACTA 60.163 40.000 13.96 2.79 41.67 2.24
3503 3857 4.137543 GGAAGACAAGATGTTGGTCAACT 58.862 43.478 13.96 1.47 41.67 3.16
3515 3869 6.825213 CCATGAATTAGATGTGGAAGACAAGA 59.175 38.462 0.00 0.00 38.36 3.02
3538 3892 2.466846 TCTTTGTGATCGGAGATCCCA 58.533 47.619 7.47 0.00 45.12 4.37
3548 3902 6.595716 ACAGTGCTAACCTATTCTTTGTGATC 59.404 38.462 0.00 0.00 0.00 2.92
3633 3987 6.461110 TCCTTTTACTAAGGGTCTATCACG 57.539 41.667 3.88 0.00 37.99 4.35
3641 3995 6.203072 TCTAGCAGATCCTTTTACTAAGGGT 58.797 40.000 3.88 0.00 37.99 4.34
3703 4057 6.260936 GTCTGTCAGAAAAATGAGAAACTCCA 59.739 38.462 3.51 0.00 0.00 3.86
3705 4059 7.489574 AGTCTGTCAGAAAAATGAGAAACTC 57.510 36.000 3.51 0.00 0.00 3.01
3711 4065 8.159344 AGGTTAAAGTCTGTCAGAAAAATGAG 57.841 34.615 3.51 0.00 0.00 2.90
3712 4066 8.519799 AAGGTTAAAGTCTGTCAGAAAAATGA 57.480 30.769 3.51 0.00 0.00 2.57
3788 4142 5.984627 TGTGACAATCAAACTGTAATCACG 58.015 37.500 0.00 0.00 0.00 4.35
3794 4148 8.669946 TTATGAACTGTGACAATCAAACTGTA 57.330 30.769 5.06 0.00 0.00 2.74
3816 4170 6.568795 AGAAACCTATACCGGGTATCCTTAT 58.431 40.000 22.50 8.43 35.83 1.73
3832 4186 1.141254 TGCCGGTTGTTGAGAAACCTA 59.859 47.619 1.90 0.00 44.16 3.08
3834 4188 0.741915 TTGCCGGTTGTTGAGAAACC 59.258 50.000 1.90 0.00 43.11 3.27
3845 4199 2.154462 CTCTTGAATGACTTGCCGGTT 58.846 47.619 1.90 0.00 0.00 4.44
3884 4238 3.558829 CACTAGATACAGCTACGGTCGAA 59.441 47.826 0.00 0.00 0.00 3.71
3917 4271 0.443869 CGAGGTCAACAATGGAAGCG 59.556 55.000 0.00 0.00 0.00 4.68
3935 4289 2.076100 TGCAAGCAGACCATCTTAACG 58.924 47.619 0.00 0.00 0.00 3.18
4002 4356 3.752222 GCTGATGAGATAAAGGCCATGAG 59.248 47.826 5.01 0.00 0.00 2.90
4005 4359 3.870538 TGCTGATGAGATAAAGGCCAT 57.129 42.857 5.01 0.00 0.00 4.40
4029 4383 6.461788 GGGTATAGTGACTCAAACTGGATCTC 60.462 46.154 0.00 0.00 0.00 2.75
4070 4424 3.979911 TGGAATTCACTACATTGGGCAT 58.020 40.909 7.93 0.00 0.00 4.40
4076 4430 8.752187 ACTGCAAATTATGGAATTCACTACATT 58.248 29.630 7.93 0.00 34.01 2.71
4077 4431 8.192774 CACTGCAAATTATGGAATTCACTACAT 58.807 33.333 7.93 4.12 34.01 2.29
4088 4442 3.831333 TGAAAGGCACTGCAAATTATGGA 59.169 39.130 2.82 0.00 40.86 3.41
4178 4532 7.094508 TGACATCTCTTTTGTTGTTAGCAAA 57.905 32.000 0.00 0.00 36.22 3.68
4188 4542 5.041191 ACAAGACCTGACATCTCTTTTGT 57.959 39.130 0.00 0.00 0.00 2.83
4226 4580 5.858381 TCTCAGATTATTGGCTCGCTTATT 58.142 37.500 0.00 0.00 0.00 1.40
4241 4595 9.917887 AGAGACCAATTGAAATATTCTCAGATT 57.082 29.630 7.12 0.00 0.00 2.40
4244 4598 8.772705 GCTAGAGACCAATTGAAATATTCTCAG 58.227 37.037 7.12 8.66 0.00 3.35
4283 4637 2.543848 TGCTAGTGTGTTGCTTCGAAAG 59.456 45.455 0.00 0.00 0.00 2.62
4322 4676 1.373570 GATACAGTGACTGCAAGCCC 58.626 55.000 13.37 0.00 37.60 5.19
4337 4691 4.688021 AGATCTTGAGTCGCTTTGGATAC 58.312 43.478 0.00 0.00 0.00 2.24
4340 4694 3.685139 AAGATCTTGAGTCGCTTTGGA 57.315 42.857 7.30 0.00 0.00 3.53
4373 4727 4.646492 GGTGGGATTACATTGCTTCAATCT 59.354 41.667 0.00 0.00 31.05 2.40
4412 4766 6.169800 TGATGTCATTCCGAACATCAAGTTA 58.830 36.000 14.01 0.00 43.80 2.24
4425 4779 1.673168 GGAGTGGCTGATGTCATTCC 58.327 55.000 0.00 0.00 45.12 3.01
4433 4787 3.782523 TGAAGGATTTAGGAGTGGCTGAT 59.217 43.478 0.00 0.00 0.00 2.90
4434 4788 3.181329 TGAAGGATTTAGGAGTGGCTGA 58.819 45.455 0.00 0.00 0.00 4.26
4435 4789 3.634397 TGAAGGATTTAGGAGTGGCTG 57.366 47.619 0.00 0.00 0.00 4.85
4497 4851 7.557719 ACTGATTTTCGGGACAAATCTGAATAT 59.442 33.333 15.19 0.00 0.00 1.28
4498 4852 6.884295 ACTGATTTTCGGGACAAATCTGAATA 59.116 34.615 15.19 0.00 0.00 1.75
4510 4864 5.351948 TGATGACATACTGATTTTCGGGA 57.648 39.130 0.00 0.00 0.00 5.14
4511 4865 5.353956 TGTTGATGACATACTGATTTTCGGG 59.646 40.000 0.00 0.00 32.00 5.14
4542 4896 1.478105 GGGCAAGGGAGTTATGCTTTG 59.522 52.381 0.00 0.00 39.94 2.77
4569 4923 3.930229 GACAAATGTGTGTACTATCGCCA 59.070 43.478 0.00 0.00 38.41 5.69
4598 4952 1.843992 CTGCAGGCTTTGTTGTGAAC 58.156 50.000 5.57 0.00 0.00 3.18
4614 4968 4.468095 TCGAAAGAACTTTAACAGCTGC 57.532 40.909 15.27 0.00 37.03 5.25
4646 5000 0.461135 AGCAAGCACCAAAACAGTGG 59.539 50.000 0.00 0.00 44.92 4.00
4655 5009 2.584835 ATGGACTTAAGCAAGCACCA 57.415 45.000 1.29 3.82 42.02 4.17
4757 5111 4.396478 GCTTTCCTAAATGGAGAGTTGGAC 59.604 45.833 4.55 0.00 45.82 4.02
4842 5196 1.476891 GGCTCGACTGACCACTATTCA 59.523 52.381 0.00 0.00 0.00 2.57
4860 5214 3.887621 TGATACTTACTCACCTGTGGC 57.112 47.619 0.00 0.00 0.00 5.01
4886 5240 2.945456 ACCCAAAAGGAAGGTGAAGAC 58.055 47.619 0.00 0.00 39.89 3.01
4921 5275 1.192146 AAGGTACAAGGCTCGGCTCA 61.192 55.000 0.00 0.00 0.00 4.26
4927 5281 5.816258 GGTACTATTGAAAGGTACAAGGCTC 59.184 44.000 11.19 0.00 37.95 4.70
4938 5292 5.041191 AGGCCTGATGGTACTATTGAAAG 57.959 43.478 3.11 0.00 35.27 2.62
4943 5297 6.387220 AGAAGTTTAGGCCTGATGGTACTATT 59.613 38.462 17.99 0.00 35.27 1.73
4963 5317 5.774690 TGCAAATGGGTATTCAAGAAGAAGT 59.225 36.000 0.00 0.00 40.15 3.01
4996 5350 1.816074 TCGTCCTTATGGGTGCAAAC 58.184 50.000 0.00 0.00 36.25 2.93
4998 5352 1.557371 TGATCGTCCTTATGGGTGCAA 59.443 47.619 0.00 0.00 36.25 4.08
5064 5418 2.972713 ACTACTGGAAGGAAGCAGTTCA 59.027 45.455 0.00 0.00 39.30 3.18
5105 5459 3.181329 TCCCAGTTCTATTTCAGAGGCA 58.819 45.455 0.00 0.00 33.83 4.75
5144 5498 6.267471 AGGCTTTTGGTGATGATTTTCTTGTA 59.733 34.615 0.00 0.00 0.00 2.41
5158 5512 1.538849 GGACTGCAAAGGCTTTTGGTG 60.539 52.381 21.26 0.47 43.12 4.17
5164 5518 1.683385 GACAAAGGACTGCAAAGGCTT 59.317 47.619 0.00 0.00 41.91 4.35
5165 5519 1.133668 AGACAAAGGACTGCAAAGGCT 60.134 47.619 0.00 0.00 41.91 4.58
5167 5521 2.856222 AGAGACAAAGGACTGCAAAGG 58.144 47.619 0.00 0.00 0.00 3.11
5175 5529 2.849294 AGGAGCAAGAGACAAAGGAC 57.151 50.000 0.00 0.00 0.00 3.85
5180 5534 4.317530 TCCTACTAGGAGCAAGAGACAA 57.682 45.455 0.03 0.00 40.06 3.18
5190 5544 7.334671 GGAAAACAATGAAGTTCCTACTAGGAG 59.665 40.741 4.93 0.00 46.73 3.69
5213 5567 4.159506 CACTTTGAAAAACCTGTGGAGGAA 59.840 41.667 0.00 0.00 42.93 3.36
5244 5598 9.423061 AGTTACAATTATTGAACTTGCCATTTC 57.577 29.630 12.28 0.00 31.59 2.17
5253 5607 7.942341 TCAGGAACCAGTTACAATTATTGAACT 59.058 33.333 12.28 12.83 34.01 3.01
5258 5612 7.827236 TCGAATCAGGAACCAGTTACAATTATT 59.173 33.333 0.00 0.00 0.00 1.40
5259 5613 7.335627 TCGAATCAGGAACCAGTTACAATTAT 58.664 34.615 0.00 0.00 0.00 1.28
5292 5646 4.229639 ACCTCATCTAATCAGGAGATGCA 58.770 43.478 7.60 0.00 46.64 3.96
5351 5705 1.737838 TGGAGTCAAATGATGCGACC 58.262 50.000 0.00 0.00 0.00 4.79
5469 5823 1.256812 CGGAAGCTGGGACCAAAAAT 58.743 50.000 0.00 0.00 0.00 1.82
5471 5825 4.492604 CGGAAGCTGGGACCAAAA 57.507 55.556 0.00 0.00 0.00 2.44
5483 5837 2.672195 GCCAATTCCAAAGAAGCGGAAG 60.672 50.000 0.00 0.00 44.28 3.46
5487 5841 1.000385 TGTGCCAATTCCAAAGAAGCG 60.000 47.619 0.00 0.00 34.86 4.68
5504 5858 1.336440 TGTTTGGCGAAGGTCAATGTG 59.664 47.619 0.00 0.00 37.65 3.21
5513 5867 1.659794 CTGGGGTTGTTTGGCGAAG 59.340 57.895 0.00 0.00 0.00 3.79
5516 5870 2.082629 GAACCTGGGGTTGTTTGGCG 62.083 60.000 6.69 0.00 46.95 5.69
5531 5885 4.922471 AAAGCTCTCCTATCTACGAACC 57.078 45.455 0.00 0.00 0.00 3.62
5537 5891 8.611051 AGAAAAGGTTAAAGCTCTCCTATCTA 57.389 34.615 0.00 0.00 30.21 1.98
5538 5892 7.503492 AGAAAAGGTTAAAGCTCTCCTATCT 57.497 36.000 0.00 0.00 0.00 1.98
5543 5897 5.413213 GGAGAAGAAAAGGTTAAAGCTCTCC 59.587 44.000 0.00 0.00 33.25 3.71
5549 5903 6.721668 AGGAATGGGAGAAGAAAAGGTTAAAG 59.278 38.462 0.00 0.00 0.00 1.85
5612 5966 6.925610 TTGATAGCATGTCATGTCCTAAAC 57.074 37.500 14.26 7.52 0.00 2.01
5701 6055 4.037684 CGGAATGGAAGAACCGTACTCTAT 59.962 45.833 0.00 0.00 42.61 1.98
5717 6071 1.685421 AAATGGGGTGGCGGAATGG 60.685 57.895 0.00 0.00 0.00 3.16
5719 6073 0.970427 GTCAAATGGGGTGGCGGAAT 60.970 55.000 0.00 0.00 0.00 3.01
5723 6077 1.303236 TCAGTCAAATGGGGTGGCG 60.303 57.895 0.00 0.00 0.00 5.69
5756 6110 5.667539 ATGGTATAATCCATGAGAGGACG 57.332 43.478 0.00 0.00 45.26 4.79
5810 6164 4.098044 TCTGATCGTGGTGGAGAGTATTTC 59.902 45.833 0.00 0.00 0.00 2.17
5828 6182 4.555689 AGATCAAGAGGCTTAGGTCTGAT 58.444 43.478 0.00 0.00 0.00 2.90
5831 6185 4.142049 CGAAAGATCAAGAGGCTTAGGTCT 60.142 45.833 0.00 0.00 0.00 3.85
5849 6203 4.615541 GCGGAAAACCAACTTAATCGAAAG 59.384 41.667 0.00 0.00 0.00 2.62
5852 6206 3.404899 AGCGGAAAACCAACTTAATCGA 58.595 40.909 0.00 0.00 0.00 3.59
5857 6211 2.292292 GCTGAAGCGGAAAACCAACTTA 59.708 45.455 0.00 0.00 0.00 2.24
5895 6249 9.614792 GAAATCTAAGGATGAGGCTTTAAACTA 57.385 33.333 0.00 0.00 31.75 2.24
5900 6254 7.437713 TCTGAAATCTAAGGATGAGGCTTTA 57.562 36.000 0.00 0.00 31.75 1.85
5934 6288 5.755849 TGATGACTCCACTAGATACTGTCA 58.244 41.667 0.00 4.91 37.37 3.58
5936 6290 7.667575 AATTGATGACTCCACTAGATACTGT 57.332 36.000 0.00 0.00 0.00 3.55
5948 6302 6.662414 TTCATGACGTTAATTGATGACTCC 57.338 37.500 0.00 0.00 0.00 3.85
5962 6316 8.110860 AGGTGAAAAGAAATATTTCATGACGT 57.889 30.769 26.02 15.49 45.50 4.34
5982 6336 5.047021 TGAATGGTGTTTTGACAAAAGGTGA 60.047 36.000 13.59 0.00 0.00 4.02
6006 6360 8.045507 ACTCATACATTCAGATCTGTGTGAAAT 58.954 33.333 25.90 15.50 41.14 2.17
6014 6368 7.866898 CCACTAGAACTCATACATTCAGATCTG 59.133 40.741 17.07 17.07 0.00 2.90
6029 6383 5.241662 AGAAATCTTGCACCACTAGAACTC 58.758 41.667 0.00 0.00 33.74 3.01
6037 6391 3.555518 GAAACGAGAAATCTTGCACCAC 58.444 45.455 0.00 0.00 0.00 4.16
6056 6410 0.969149 AGTCTCATGTGACTGCGGAA 59.031 50.000 25.48 0.00 44.64 4.30
6080 6434 0.667993 GTGTGCAAGCTAAGCAACCA 59.332 50.000 14.53 7.61 44.64 3.67
6113 6467 0.984230 TCACCACTGTCAAGGGATCC 59.016 55.000 1.92 1.92 0.00 3.36
6164 6518 3.958704 TGTTAACTTTGGTTGCATGTCG 58.041 40.909 7.22 0.00 36.92 4.35
6176 6530 6.671614 TCACGTCTTTGTCATGTTAACTTT 57.328 33.333 7.22 0.00 0.00 2.66
6196 6550 3.609373 CGAATCAAATGTGTGGCATTCAC 59.391 43.478 1.54 1.54 46.29 3.18
6283 6637 4.101114 TGGTAAAGGCTATGAGTCAGGAA 58.899 43.478 0.00 0.00 0.00 3.36
6350 6704 4.956700 TGTAGAGATGGCTACAAGCTAGTT 59.043 41.667 0.00 0.00 45.55 2.24
6385 6739 7.361713 CCTCCGTCAATAAAAATCTTGTTAGCA 60.362 37.037 0.00 0.00 0.00 3.49
6425 6779 2.604046 AGATCGTGCGGCTAAAGAAT 57.396 45.000 0.00 0.00 0.00 2.40
6429 6783 0.461339 GGGAAGATCGTGCGGCTAAA 60.461 55.000 0.00 0.00 0.00 1.85
6431 6785 2.792947 GGGGAAGATCGTGCGGCTA 61.793 63.158 0.00 0.00 0.00 3.93
6469 6824 2.326550 GTTCGTGGTGTTGGCACG 59.673 61.111 0.00 0.00 46.13 5.34
6483 6838 1.940613 ACGGTTCAAGTGCTTCTGTTC 59.059 47.619 0.00 0.00 0.00 3.18
6506 6861 0.606401 ACTTCAACCGTGCTGATGGG 60.606 55.000 0.00 0.00 31.60 4.00
6513 6868 3.655481 CAGGGACTTCAACCGTGC 58.345 61.111 0.00 0.00 34.60 5.34
6543 6898 6.450545 TGCGTTGATATTTCCATGTTTTCAA 58.549 32.000 0.00 0.00 0.00 2.69
6544 6899 6.018589 TGCGTTGATATTTCCATGTTTTCA 57.981 33.333 0.00 0.00 0.00 2.69
6582 6937 4.594970 TGATTGGTTGATTGATACGGGTT 58.405 39.130 0.00 0.00 0.00 4.11
6589 6944 6.320672 GTCATTCTCCTGATTGGTTGATTGAT 59.679 38.462 0.00 0.00 35.17 2.57
6652 7007 2.300152 TGGAGACACTGACATGAAGGAC 59.700 50.000 0.00 0.00 33.40 3.85
6672 7027 2.688507 AGACCGCTAATGTTGTCAGTG 58.311 47.619 0.00 0.00 0.00 3.66
6673 7028 3.067106 CAAGACCGCTAATGTTGTCAGT 58.933 45.455 0.00 0.00 0.00 3.41
6674 7029 2.159653 GCAAGACCGCTAATGTTGTCAG 60.160 50.000 0.00 0.00 0.00 3.51
6728 7083 3.087065 GGCTCCTAGTTGCCCCAA 58.913 61.111 11.02 0.00 43.11 4.12
6758 7113 0.877071 GCTTGTCATGTGTGTGGAGG 59.123 55.000 0.00 0.00 0.00 4.30
6817 7172 1.815003 GGGAAGAACATGGTTCTGCAG 59.185 52.381 16.69 7.63 0.00 4.41
6820 7175 3.689347 TGATGGGAAGAACATGGTTCTG 58.311 45.455 11.97 0.00 0.00 3.02
6822 7177 4.524328 AGTTTGATGGGAAGAACATGGTTC 59.476 41.667 0.00 0.94 0.00 3.62
6824 7179 4.118168 AGTTTGATGGGAAGAACATGGT 57.882 40.909 0.00 0.00 0.00 3.55
6827 7182 4.590222 AGCAAAGTTTGATGGGAAGAACAT 59.410 37.500 19.82 0.00 0.00 2.71
6844 7199 4.448732 GGCAAGTTTGATGGTAAAGCAAAG 59.551 41.667 0.00 0.00 32.76 2.77
6861 7216 6.449698 CACAAGTTCAAGAATAATGGCAAGT 58.550 36.000 0.00 0.00 0.00 3.16
6868 7223 4.463891 CAGCCCCACAAGTTCAAGAATAAT 59.536 41.667 0.00 0.00 0.00 1.28
6871 7226 2.242043 CAGCCCCACAAGTTCAAGAAT 58.758 47.619 0.00 0.00 0.00 2.40
6925 7280 2.030045 GCTCGAGGTATTGAGGGAGGT 61.030 57.143 15.58 0.00 37.42 3.85
6926 7281 0.676736 GCTCGAGGTATTGAGGGAGG 59.323 60.000 15.58 0.00 37.42 4.30
6929 7284 0.249073 CGTGCTCGAGGTATTGAGGG 60.249 60.000 15.58 0.00 37.42 4.30
6944 7299 1.129437 GAGAGCAAAGGACAATCGTGC 59.871 52.381 0.00 0.00 35.41 5.34
7018 7373 3.902881 ACCTCACTGAAGCATAAGAGG 57.097 47.619 0.00 0.00 46.18 3.69
7034 7389 2.701107 GTGGAGGAACTTTGCTACCTC 58.299 52.381 0.00 0.00 45.50 3.85
7054 7409 0.895530 TCACTAAGCTTCCTCCCACG 59.104 55.000 0.00 0.00 0.00 4.94
7056 7411 2.832838 TCATCACTAAGCTTCCTCCCA 58.167 47.619 0.00 0.00 0.00 4.37
7057 7412 4.262678 GGTATCATCACTAAGCTTCCTCCC 60.263 50.000 0.00 0.00 0.00 4.30
7081 7436 1.444836 CGGACAAGTTTATTGCCGGA 58.555 50.000 5.05 0.00 36.32 5.14
7083 7438 1.161843 ACCGGACAAGTTTATTGCCG 58.838 50.000 9.46 13.08 38.16 5.69
7089 7444 5.999205 TTGTATCCTACCGGACAAGTTTA 57.001 39.130 9.46 0.00 43.51 2.01
7132 7487 4.815308 GCTCATGAGATACAGTCATTTGCT 59.185 41.667 27.04 0.00 32.06 3.91
7156 7511 0.035317 AGCACTCCGTGATTGAGCAA 59.965 50.000 0.00 0.00 35.23 3.91
7164 7519 0.598562 GACTGAAGAGCACTCCGTGA 59.401 55.000 0.00 0.00 35.23 4.35
7228 7583 1.270907 AGTTTGGAGTCTCGGATGCT 58.729 50.000 0.00 0.00 0.00 3.79
7261 7616 9.833179 ATTGATAATGGAAAAGATATGTGGGAT 57.167 29.630 0.00 0.00 0.00 3.85
7291 7646 5.234972 TGAGAACATAGTTGATGCTTATGCG 59.765 40.000 0.00 0.00 43.34 4.73
7345 7700 9.143631 CAAGCTTTTTAGAAAATGGATACCTTG 57.856 33.333 0.00 0.00 0.00 3.61
7362 7717 1.134431 CCCAACAGGCACAAGCTTTTT 60.134 47.619 0.00 0.00 41.70 1.94
7363 7718 0.465287 CCCAACAGGCACAAGCTTTT 59.535 50.000 0.00 0.00 41.70 2.27
7415 7771 2.102757 CAGACCATGAGCTGCTATGACT 59.897 50.000 0.15 7.33 0.00 3.41
7434 7790 4.629200 GTGAGAGCAGTCTTATGGTTTCAG 59.371 45.833 0.12 0.00 40.94 3.02
7436 7792 3.614616 CGTGAGAGCAGTCTTATGGTTTC 59.385 47.826 0.00 0.00 33.66 2.78
7484 7840 2.496070 TCCACGAGACCTCCTATGTTTG 59.504 50.000 0.00 0.00 0.00 2.93
7501 7857 0.746659 AGTGGTTTTGCTGCTTCCAC 59.253 50.000 19.62 19.62 45.94 4.02
7519 7875 6.598064 CCTTATTATAGGCAATTTACCCCGAG 59.402 42.308 0.00 0.00 0.00 4.63
7590 7946 9.331282 ACCATGCTTTATCTAGTATTTCTGTTC 57.669 33.333 0.00 0.00 0.00 3.18
7651 8007 6.795399 ACATGTTGTTTACCTTCTCTTTGTG 58.205 36.000 0.00 0.00 0.00 3.33
7709 8065 2.849942 TGCAACATGCTGTACTGTCTT 58.150 42.857 3.78 0.00 45.31 3.01
7785 8141 7.235159 TCTCCCCTTTCTATTAGAGGTTCTA 57.765 40.000 0.00 0.00 0.00 2.10
7826 8182 1.305633 AGTGCCTCTGCTCCTGCTA 60.306 57.895 0.00 0.00 40.48 3.49
7941 8304 3.186817 CGACTACTGACTTCTTCGTCACT 59.813 47.826 0.00 0.00 38.89 3.41
7980 8343 2.937149 GGGAGAAGCGTGATAAGGTTTC 59.063 50.000 0.00 0.00 0.00 2.78
7993 8356 0.456628 GAGTCCTGTACGGGAGAAGC 59.543 60.000 24.28 12.07 35.87 3.86
8062 8426 0.179070 GTCTTCCTCATCCCGGCTTC 60.179 60.000 0.00 0.00 0.00 3.86
8086 8450 1.980765 TGGTTCCAATCTCTGAGCTGT 59.019 47.619 0.00 0.00 0.00 4.40
8119 8487 5.843421 AGATAGATGCACCATAACTTCTCCT 59.157 40.000 0.00 0.00 0.00 3.69
8120 8488 5.931146 CAGATAGATGCACCATAACTTCTCC 59.069 44.000 0.00 0.00 0.00 3.71
8121 8489 6.753180 TCAGATAGATGCACCATAACTTCTC 58.247 40.000 0.00 0.00 0.00 2.87
8171 8542 1.181786 CTCTCGCCTCCTTCTCTTGT 58.818 55.000 0.00 0.00 0.00 3.16
8328 14317 4.458989 TGAGCCGATGTCTAAATTTTTGCT 59.541 37.500 0.00 0.00 0.00 3.91
8484 25801 8.880750 GGCAAGGAATACTACTAAAGTTTAGTG 58.119 37.037 30.18 22.83 39.80 2.74
8573 25890 6.884295 TGGAATTTAGTCTACTTTGGGACATG 59.116 38.462 0.00 0.00 39.30 3.21
8584 25901 9.149225 CATCAGATATGCTGGAATTTAGTCTAC 57.851 37.037 0.00 0.00 44.98 2.59
8711 26092 2.809696 GCAGTAGCGAGGGTTTTTAACA 59.190 45.455 0.00 0.00 0.00 2.41
8834 26215 2.040359 TATGGCATGTCCCGGGGA 60.040 61.111 23.50 12.99 0.00 4.81
9010 26396 4.440839 AAATTGAAAAGGCGATCCACTC 57.559 40.909 0.00 0.00 33.74 3.51
9228 26623 5.950883 TGTCGAACAATTCTCGAGTAGATT 58.049 37.500 13.13 8.71 45.37 2.40
9298 26693 2.620251 TGTTCAGATATTGGGAGCCG 57.380 50.000 0.00 0.00 0.00 5.52
9330 26725 7.859613 TCGAGATCGAATATCTTTTCATCAC 57.140 36.000 1.76 0.00 46.30 3.06
9534 26929 3.331889 TGGAGGGCTGAAAGAAGAAGATT 59.668 43.478 0.00 0.00 34.07 2.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.