Multiple sequence alignment - TraesCS5B01G523600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G523600 chr5B 100.000 3924 0 0 1 3924 684577050 684580973 0.000000e+00 7247.0
1 TraesCS5B01G523600 chr5B 79.823 2032 334 45 930 2911 684603971 684605976 0.000000e+00 1411.0
2 TraesCS5B01G523600 chr5B 79.868 1669 270 34 910 2545 684690288 684691923 0.000000e+00 1160.0
3 TraesCS5B01G523600 chr5B 78.980 490 78 13 887 1359 684610464 684610945 1.060000e-80 311.0
4 TraesCS5B01G523600 chr5B 85.915 71 10 0 1446 1516 557110430 557110500 4.200000e-10 76.8
5 TraesCS5B01G523600 chr5D 95.856 2534 105 0 770 3303 543067764 543070297 0.000000e+00 4098.0
6 TraesCS5B01G523600 chr5D 83.203 2048 277 38 909 2902 543092387 543094421 0.000000e+00 1814.0
7 TraesCS5B01G523600 chr5D 79.820 2002 320 45 926 2884 543229374 543231334 0.000000e+00 1382.0
8 TraesCS5B01G523600 chr5D 81.287 1523 234 31 1421 2911 543223768 543225271 0.000000e+00 1186.0
9 TraesCS5B01G523600 chr5D 94.247 365 15 3 3 366 543066785 543067144 1.590000e-153 553.0
10 TraesCS5B01G523600 chr5D 94.587 351 10 5 358 707 543067420 543067762 5.770000e-148 534.0
11 TraesCS5B01G523600 chr5D 95.417 240 11 0 3685 3924 107595084 107594845 2.210000e-102 383.0
12 TraesCS5B01G523600 chr5D 78.652 445 79 8 927 1359 543213330 543213770 8.300000e-72 281.0
13 TraesCS5B01G523600 chr5D 81.818 308 30 13 3394 3687 543070301 543070596 6.560000e-58 235.0
14 TraesCS5B01G523600 chr4A 84.754 1771 236 23 1154 2897 626074938 626073175 0.000000e+00 1744.0
15 TraesCS5B01G523600 chr4A 78.745 2310 375 75 669 2911 626066263 626064003 0.000000e+00 1439.0
16 TraesCS5B01G523600 chr4A 81.115 1525 250 28 1401 2909 626049131 626047629 0.000000e+00 1186.0
17 TraesCS5B01G523600 chr4A 80.837 1529 255 25 1408 2910 626022079 626020563 0.000000e+00 1166.0
18 TraesCS5B01G523600 chr4A 91.401 721 36 9 3 713 626078059 626077355 0.000000e+00 965.0
19 TraesCS5B01G523600 chr4A 94.614 557 29 1 745 1300 626077366 626076810 0.000000e+00 861.0
20 TraesCS5B01G523600 chr4A 87.833 526 42 8 2516 3040 626076812 626076308 7.260000e-167 597.0
21 TraesCS5B01G523600 chr4A 78.178 472 82 12 905 1359 626049676 626049209 8.300000e-72 281.0
22 TraesCS5B01G523600 chr3D 90.353 850 50 13 3 837 33704416 33705248 0.000000e+00 1086.0
23 TraesCS5B01G523600 chr6B 96.250 240 9 0 3685 3924 575284597 575284358 1.020000e-105 394.0
24 TraesCS5B01G523600 chr6B 96.250 240 8 1 3685 3924 292822879 292822641 3.680000e-105 392.0
25 TraesCS5B01G523600 chr6B 95.833 240 10 0 3685 3924 223450477 223450238 4.750000e-104 388.0
26 TraesCS5B01G523600 chr2B 96.250 240 9 0 3685 3924 314282460 314282221 1.020000e-105 394.0
27 TraesCS5B01G523600 chr2B 95.833 240 10 0 3685 3924 361230596 361230357 4.750000e-104 388.0
28 TraesCS5B01G523600 chr1D 96.250 240 9 0 3685 3924 1278268 1278029 1.020000e-105 394.0
29 TraesCS5B01G523600 chr3B 95.833 240 10 0 3685 3924 704452285 704452524 4.750000e-104 388.0
30 TraesCS5B01G523600 chr1B 95.833 240 10 0 3685 3924 594709068 594709307 4.750000e-104 388.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G523600 chr5B 684577050 684580973 3923 False 7247.00 7247 100.0000 1 3924 1 chr5B.!!$F2 3923
1 TraesCS5B01G523600 chr5B 684603971 684605976 2005 False 1411.00 1411 79.8230 930 2911 1 chr5B.!!$F3 1981
2 TraesCS5B01G523600 chr5B 684690288 684691923 1635 False 1160.00 1160 79.8680 910 2545 1 chr5B.!!$F5 1635
3 TraesCS5B01G523600 chr5D 543092387 543094421 2034 False 1814.00 1814 83.2030 909 2902 1 chr5D.!!$F1 1993
4 TraesCS5B01G523600 chr5D 543229374 543231334 1960 False 1382.00 1382 79.8200 926 2884 1 chr5D.!!$F4 1958
5 TraesCS5B01G523600 chr5D 543066785 543070596 3811 False 1355.00 4098 91.6270 3 3687 4 chr5D.!!$F5 3684
6 TraesCS5B01G523600 chr5D 543223768 543225271 1503 False 1186.00 1186 81.2870 1421 2911 1 chr5D.!!$F3 1490
7 TraesCS5B01G523600 chr4A 626064003 626066263 2260 True 1439.00 1439 78.7450 669 2911 1 chr4A.!!$R2 2242
8 TraesCS5B01G523600 chr4A 626020563 626022079 1516 True 1166.00 1166 80.8370 1408 2910 1 chr4A.!!$R1 1502
9 TraesCS5B01G523600 chr4A 626073175 626078059 4884 True 1041.75 1744 89.6505 3 3040 4 chr4A.!!$R4 3037
10 TraesCS5B01G523600 chr4A 626047629 626049676 2047 True 733.50 1186 79.6465 905 2909 2 chr4A.!!$R3 2004
11 TraesCS5B01G523600 chr3D 33704416 33705248 832 False 1086.00 1086 90.3530 3 837 1 chr3D.!!$F1 834

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
725 1023 0.110486 TTTGCTTCTCTCACCCCACC 59.890 55.0 0.0 0.0 0.00 4.61 F
2049 4906 0.036164 TTCCAGATGTTGTGGGTCGG 59.964 55.0 0.0 0.0 35.58 4.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2371 5237 0.248949 GGTACGCGGTCATCTTCCTC 60.249 60.0 12.47 0.0 0.0 3.71 R
3867 6795 0.038251 TGTTGTACTGCGCCTGAGAG 60.038 55.0 4.18 0.0 0.0 3.20 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
117 119 5.406477 CCCTTTTGCTCAACTTAATCTTTGC 59.594 40.000 0.00 0.00 0.00 3.68
118 120 5.406477 CCTTTTGCTCAACTTAATCTTTGCC 59.594 40.000 0.00 0.00 0.00 4.52
225 227 1.617263 CCTCCGTTCCTTCTCTGAGGA 60.617 57.143 4.59 0.00 43.99 3.71
265 267 6.380274 ACAACTACCAGCGCAGGTATATATAT 59.620 38.462 29.11 12.20 42.92 0.86
360 364 4.408596 CCCCACTTAATTGTGCCCAATATT 59.591 41.667 0.00 0.00 40.42 1.28
361 365 5.600484 CCCCACTTAATTGTGCCCAATATTA 59.400 40.000 0.00 0.00 40.42 0.98
362 366 6.462347 CCCCACTTAATTGTGCCCAATATTAC 60.462 42.308 0.00 0.00 40.42 1.89
363 367 6.323739 CCCACTTAATTGTGCCCAATATTACT 59.676 38.462 0.00 0.00 40.42 2.24
364 368 7.504238 CCCACTTAATTGTGCCCAATATTACTA 59.496 37.037 0.00 0.00 40.42 1.82
365 369 8.349983 CCACTTAATTGTGCCCAATATTACTAC 58.650 37.037 0.00 0.00 40.42 2.73
378 665 9.658799 CCCAATATTACTACAATAGACAGATGG 57.341 37.037 0.00 0.00 0.00 3.51
398 685 8.405531 CAGATGGTTTGTTTTTCTTCTTCTGTA 58.594 33.333 0.00 0.00 0.00 2.74
441 730 6.105333 ACGTTATTATACGCCAAGTTGGTTA 58.895 36.000 22.85 14.51 45.06 2.85
444 733 2.118313 ATACGCCAAGTTGGTTACCC 57.882 50.000 22.85 5.14 40.46 3.69
445 734 1.058284 TACGCCAAGTTGGTTACCCT 58.942 50.000 22.85 2.66 40.46 4.34
446 735 0.536460 ACGCCAAGTTGGTTACCCTG 60.536 55.000 22.85 7.27 40.46 4.45
447 736 0.536460 CGCCAAGTTGGTTACCCTGT 60.536 55.000 22.85 0.00 40.46 4.00
448 737 1.244816 GCCAAGTTGGTTACCCTGTC 58.755 55.000 22.85 0.00 40.46 3.51
449 738 1.519408 CCAAGTTGGTTACCCTGTCG 58.481 55.000 14.21 0.00 31.35 4.35
450 739 1.519408 CAAGTTGGTTACCCTGTCGG 58.481 55.000 0.00 0.00 37.81 4.79
504 793 5.505780 TGGTGCTTAATTAATGCAGGTAGT 58.494 37.500 17.24 0.00 37.39 2.73
511 800 7.201696 GCTTAATTAATGCAGGTAGTGTGCTTA 60.202 37.037 12.10 0.00 41.78 3.09
609 898 4.386867 TCGTAGCAACATTTCTAGGAGG 57.613 45.455 0.00 0.00 0.00 4.30
648 937 0.954452 AAAACTTCAGAAGGCAGCCG 59.046 50.000 14.90 0.00 0.00 5.52
707 996 5.646692 ACTGGTGCAGGTATATATGGTTT 57.353 39.130 0.00 0.00 35.51 3.27
708 997 6.013554 ACTGGTGCAGGTATATATGGTTTT 57.986 37.500 0.00 0.00 35.51 2.43
709 998 5.827797 ACTGGTGCAGGTATATATGGTTTTG 59.172 40.000 0.00 0.00 35.51 2.44
710 999 4.582656 TGGTGCAGGTATATATGGTTTTGC 59.417 41.667 0.00 0.00 0.00 3.68
711 1000 4.827284 GGTGCAGGTATATATGGTTTTGCT 59.173 41.667 0.00 0.00 0.00 3.91
713 1002 6.438763 GTGCAGGTATATATGGTTTTGCTTC 58.561 40.000 0.00 0.00 0.00 3.86
715 1004 6.486657 TGCAGGTATATATGGTTTTGCTTCTC 59.513 38.462 0.00 0.00 0.00 2.87
716 1005 6.712547 GCAGGTATATATGGTTTTGCTTCTCT 59.287 38.462 0.00 0.00 0.00 3.10
721 1019 1.981256 TGGTTTTGCTTCTCTCACCC 58.019 50.000 0.00 0.00 0.00 4.61
725 1023 0.110486 TTTGCTTCTCTCACCCCACC 59.890 55.000 0.00 0.00 0.00 4.61
726 1024 0.768221 TTGCTTCTCTCACCCCACCT 60.768 55.000 0.00 0.00 0.00 4.00
728 1026 0.322008 GCTTCTCTCACCCCACCTTG 60.322 60.000 0.00 0.00 0.00 3.61
729 1027 1.059913 CTTCTCTCACCCCACCTTGT 58.940 55.000 0.00 0.00 0.00 3.16
732 1030 2.915869 TCTCTCACCCCACCTTGTAAT 58.084 47.619 0.00 0.00 0.00 1.89
733 1031 2.571653 TCTCTCACCCCACCTTGTAATG 59.428 50.000 0.00 0.00 0.00 1.90
734 1032 2.305927 CTCTCACCCCACCTTGTAATGT 59.694 50.000 0.00 0.00 0.00 2.71
735 1033 3.517901 CTCTCACCCCACCTTGTAATGTA 59.482 47.826 0.00 0.00 0.00 2.29
736 1034 3.262405 TCTCACCCCACCTTGTAATGTAC 59.738 47.826 0.00 0.00 0.00 2.90
739 1037 2.290705 ACCCCACCTTGTAATGTACAGC 60.291 50.000 0.33 0.00 40.24 4.40
740 1038 2.026262 CCCCACCTTGTAATGTACAGCT 60.026 50.000 0.33 0.00 40.24 4.24
743 1041 5.250200 CCCACCTTGTAATGTACAGCTTTA 58.750 41.667 0.33 0.00 40.24 1.85
744 1042 5.708230 CCCACCTTGTAATGTACAGCTTTAA 59.292 40.000 0.33 0.00 40.24 1.52
746 1044 7.415206 CCCACCTTGTAATGTACAGCTTTAATC 60.415 40.741 0.33 0.00 40.24 1.75
748 1046 7.064134 CACCTTGTAATGTACAGCTTTAATCGA 59.936 37.037 0.33 0.00 40.24 3.59
816 1115 5.076182 TGTGCCTGAATATCCTGTTTTCAA 58.924 37.500 0.00 0.00 0.00 2.69
844 1143 6.878389 AGAGAGATGCTTTCTTTTACCTCTTG 59.122 38.462 0.00 0.00 30.40 3.02
924 1232 4.647424 TTAAGTTTCTGCCTGGTGTTTG 57.353 40.909 0.00 0.00 0.00 2.93
942 1250 2.785540 TGATCAATGCAGGCAGTGTA 57.214 45.000 19.46 8.54 41.95 2.90
1020 1769 2.805353 CACTCCGACACCGCTTCG 60.805 66.667 0.00 0.00 36.20 3.79
1300 4098 4.880164 ACATGGTAGAGAAAGGCCTACTA 58.120 43.478 5.16 5.23 36.43 1.82
1502 4342 4.880696 AGGACATAGTTCACTACCTACGAC 59.119 45.833 0.00 0.00 0.00 4.34
1562 4406 6.926272 TGTGCAGGTGTTTTAATTCAATAACC 59.074 34.615 0.00 0.00 0.00 2.85
1564 4408 6.016192 TGCAGGTGTTTTAATTCAATAACCGA 60.016 34.615 0.00 0.00 0.00 4.69
1726 4583 1.668151 GTCCCTTTCTTCGCGTGCT 60.668 57.895 5.77 0.00 0.00 4.40
1776 4633 0.887387 GTGTTGGCGCAAAGAGGGTA 60.887 55.000 10.83 0.00 0.00 3.69
1875 4732 3.405831 CAGAACTGCAGAAGAACCATCA 58.594 45.455 23.35 0.00 0.00 3.07
2049 4906 0.036164 TTCCAGATGTTGTGGGTCGG 59.964 55.000 0.00 0.00 35.58 4.79
2169 5035 1.669115 CTCCCGTGCAGGTGTTGAG 60.669 63.158 5.57 2.42 38.74 3.02
2233 5099 1.446966 GTTCTCAGGCGCAGACCTC 60.447 63.158 10.83 0.00 38.26 3.85
2254 5120 0.433492 CAAACCTAGTGAACGACGCG 59.567 55.000 3.53 3.53 0.00 6.01
2257 5123 3.238241 CTAGTGAACGACGCGGCG 61.238 66.667 36.13 36.13 37.29 6.46
2275 5141 1.077858 GCTCAAGGCTTCCAGGGAG 60.078 63.158 0.00 1.65 38.06 4.30
2371 5237 0.932123 CGGTGATGTCTGATCGCTCG 60.932 60.000 0.00 0.00 0.00 5.03
2464 5330 1.228831 CAAGGCCACCATTGTCCCA 60.229 57.895 5.01 0.00 0.00 4.37
2566 5432 0.179034 GACTGGATGTCCTCATGGGC 60.179 60.000 0.09 0.00 39.69 5.36
2791 5676 1.780503 AGGCATTATTGGACAAGGCC 58.219 50.000 0.00 0.00 40.18 5.19
2821 5706 0.787787 CGAAAACGATTCTCACGGCA 59.212 50.000 0.00 0.00 34.93 5.69
2850 5735 2.202987 GCTCCATGTCCTCGCCAG 60.203 66.667 0.00 0.00 0.00 4.85
2974 5859 3.003378 GGGACTTGTTGAAACCTTCTTCG 59.997 47.826 0.00 0.00 0.00 3.79
2984 5869 1.144936 CCTTCTTCGCCTGGCCTAG 59.855 63.158 14.12 10.60 0.00 3.02
2994 5879 0.749649 CCTGGCCTAGCAGTGTAGAG 59.250 60.000 3.32 0.00 0.00 2.43
3004 5889 2.370189 AGCAGTGTAGAGGCAGAAGTTT 59.630 45.455 0.00 0.00 0.00 2.66
3027 5912 6.942532 TTGTTTTCTGATACTTCTGTTGCT 57.057 33.333 0.00 0.00 0.00 3.91
3055 5940 1.546476 AGAGTGTAAAGAGCGGTCTGG 59.454 52.381 19.39 0.00 31.37 3.86
3062 5947 3.425162 AAAGAGCGGTCTGGATTTTCT 57.575 42.857 19.39 0.00 31.37 2.52
3068 5953 3.441572 AGCGGTCTGGATTTTCTGAATTG 59.558 43.478 0.00 0.00 0.00 2.32
3069 5954 3.191371 GCGGTCTGGATTTTCTGAATTGT 59.809 43.478 0.00 0.00 0.00 2.71
3089 5974 9.213799 GAATTGTATTTCTCAAGTCTGAAGAGT 57.786 33.333 0.00 0.00 37.08 3.24
3176 6061 2.036475 CTGAGTATCCATCCCTTGGTCG 59.964 54.545 0.00 0.00 46.52 4.79
3194 6079 1.668751 TCGAAGAACAGGCAACAACAC 59.331 47.619 0.00 0.00 41.41 3.32
3197 6082 3.489059 CGAAGAACAGGCAACAACACAAT 60.489 43.478 0.00 0.00 41.41 2.71
3240 6125 0.931005 GCTTCCTGATTAGCCGAACG 59.069 55.000 0.00 0.00 0.00 3.95
3242 6127 0.248012 TTCCTGATTAGCCGAACGCA 59.752 50.000 0.00 0.00 41.38 5.24
3249 6134 2.892373 TTAGCCGAACGCATTTCTTG 57.108 45.000 0.00 0.00 41.38 3.02
3295 6180 6.767902 GCAATAGTTTGATGATCCAAGGTAGA 59.232 38.462 0.00 0.00 34.60 2.59
3297 6182 5.104259 AGTTTGATGATCCAAGGTAGACC 57.896 43.478 0.00 0.00 0.00 3.85
3298 6183 4.536090 AGTTTGATGATCCAAGGTAGACCA 59.464 41.667 0.66 0.00 38.89 4.02
3299 6184 4.760530 TTGATGATCCAAGGTAGACCAG 57.239 45.455 0.66 0.00 38.89 4.00
3300 6185 3.724478 TGATGATCCAAGGTAGACCAGT 58.276 45.455 0.66 0.00 38.89 4.00
3301 6186 4.104086 TGATGATCCAAGGTAGACCAGTT 58.896 43.478 0.66 0.00 38.89 3.16
3302 6187 4.162320 TGATGATCCAAGGTAGACCAGTTC 59.838 45.833 0.66 0.00 38.89 3.01
3303 6188 3.516586 TGATCCAAGGTAGACCAGTTCA 58.483 45.455 0.66 0.00 38.89 3.18
3304 6189 3.515502 TGATCCAAGGTAGACCAGTTCAG 59.484 47.826 0.66 0.00 38.89 3.02
3305 6190 2.972348 TCCAAGGTAGACCAGTTCAGT 58.028 47.619 0.66 0.00 38.89 3.41
3306 6191 4.122337 TCCAAGGTAGACCAGTTCAGTA 57.878 45.455 0.66 0.00 38.89 2.74
3307 6192 4.684724 TCCAAGGTAGACCAGTTCAGTAT 58.315 43.478 0.66 0.00 38.89 2.12
3308 6193 4.710375 TCCAAGGTAGACCAGTTCAGTATC 59.290 45.833 0.66 0.00 38.89 2.24
3309 6194 4.466370 CCAAGGTAGACCAGTTCAGTATCA 59.534 45.833 0.66 0.00 38.89 2.15
3310 6195 5.129485 CCAAGGTAGACCAGTTCAGTATCAT 59.871 44.000 0.66 0.00 38.89 2.45
3311 6196 6.276847 CAAGGTAGACCAGTTCAGTATCATC 58.723 44.000 0.66 0.00 38.89 2.92
3312 6197 5.772004 AGGTAGACCAGTTCAGTATCATCT 58.228 41.667 0.66 0.00 38.89 2.90
3313 6198 5.596361 AGGTAGACCAGTTCAGTATCATCTG 59.404 44.000 0.66 0.00 38.89 2.90
3314 6199 5.594725 GGTAGACCAGTTCAGTATCATCTGA 59.405 44.000 0.00 0.00 38.04 3.27
3315 6200 5.850557 AGACCAGTTCAGTATCATCTGAG 57.149 43.478 0.00 0.00 43.85 3.35
3316 6201 4.099266 AGACCAGTTCAGTATCATCTGAGC 59.901 45.833 3.12 3.12 43.85 4.26
3317 6202 3.181482 ACCAGTTCAGTATCATCTGAGCG 60.181 47.826 0.00 0.00 45.64 5.03
3318 6203 2.793790 CAGTTCAGTATCATCTGAGCGC 59.206 50.000 0.00 0.00 45.64 5.92
3319 6204 1.783711 GTTCAGTATCATCTGAGCGCG 59.216 52.381 0.00 0.00 43.85 6.86
3320 6205 1.308998 TCAGTATCATCTGAGCGCGA 58.691 50.000 12.10 0.00 39.20 5.87
3321 6206 1.676006 TCAGTATCATCTGAGCGCGAA 59.324 47.619 12.10 0.00 39.20 4.70
3322 6207 2.099098 TCAGTATCATCTGAGCGCGAAA 59.901 45.455 12.10 0.00 39.20 3.46
3323 6208 2.470628 CAGTATCATCTGAGCGCGAAAG 59.529 50.000 12.10 3.07 37.61 2.62
3324 6209 2.359214 AGTATCATCTGAGCGCGAAAGA 59.641 45.455 12.10 9.52 0.00 2.52
3325 6210 2.522836 ATCATCTGAGCGCGAAAGAT 57.477 45.000 12.10 11.66 0.00 2.40
3326 6211 3.650070 ATCATCTGAGCGCGAAAGATA 57.350 42.857 12.10 10.12 0.00 1.98
3327 6212 2.732366 TCATCTGAGCGCGAAAGATAC 58.268 47.619 12.10 0.00 0.00 2.24
3328 6213 2.099098 TCATCTGAGCGCGAAAGATACA 59.901 45.455 12.10 8.64 0.00 2.29
3329 6214 2.647529 TCTGAGCGCGAAAGATACAA 57.352 45.000 12.10 0.00 0.00 2.41
3330 6215 3.165058 TCTGAGCGCGAAAGATACAAT 57.835 42.857 12.10 0.00 0.00 2.71
3331 6216 3.521560 TCTGAGCGCGAAAGATACAATT 58.478 40.909 12.10 0.00 0.00 2.32
3332 6217 4.678622 TCTGAGCGCGAAAGATACAATTA 58.321 39.130 12.10 0.00 0.00 1.40
3333 6218 5.106442 TCTGAGCGCGAAAGATACAATTAA 58.894 37.500 12.10 0.00 0.00 1.40
3334 6219 5.579119 TCTGAGCGCGAAAGATACAATTAAA 59.421 36.000 12.10 0.00 0.00 1.52
3335 6220 6.091577 TCTGAGCGCGAAAGATACAATTAAAA 59.908 34.615 12.10 0.00 0.00 1.52
3336 6221 6.781138 TGAGCGCGAAAGATACAATTAAAAT 58.219 32.000 12.10 0.00 0.00 1.82
3337 6222 6.686679 TGAGCGCGAAAGATACAATTAAAATG 59.313 34.615 12.10 0.00 0.00 2.32
3338 6223 5.971202 AGCGCGAAAGATACAATTAAAATGG 59.029 36.000 12.10 0.00 0.00 3.16
3339 6224 5.741982 GCGCGAAAGATACAATTAAAATGGT 59.258 36.000 12.10 0.00 0.00 3.55
3340 6225 6.252655 GCGCGAAAGATACAATTAAAATGGTT 59.747 34.615 12.10 0.00 0.00 3.67
3341 6226 7.513041 GCGCGAAAGATACAATTAAAATGGTTC 60.513 37.037 12.10 0.00 0.00 3.62
3342 6227 7.483375 CGCGAAAGATACAATTAAAATGGTTCA 59.517 33.333 0.00 0.00 0.00 3.18
3343 6228 9.134734 GCGAAAGATACAATTAAAATGGTTCAA 57.865 29.630 0.00 0.00 0.00 2.69
3360 6245 5.722021 GTTCAAACCACCCATTGTAATCT 57.278 39.130 0.00 0.00 0.00 2.40
3361 6246 5.469479 GTTCAAACCACCCATTGTAATCTG 58.531 41.667 0.00 0.00 0.00 2.90
3362 6247 4.991776 TCAAACCACCCATTGTAATCTGA 58.008 39.130 0.00 0.00 0.00 3.27
3363 6248 4.764823 TCAAACCACCCATTGTAATCTGAC 59.235 41.667 0.00 0.00 0.00 3.51
3364 6249 4.380843 AACCACCCATTGTAATCTGACA 57.619 40.909 0.00 0.00 0.00 3.58
3365 6250 3.955471 ACCACCCATTGTAATCTGACAG 58.045 45.455 0.00 0.00 0.00 3.51
3366 6251 3.587061 ACCACCCATTGTAATCTGACAGA 59.413 43.478 7.80 7.80 0.00 3.41
3367 6252 3.941483 CCACCCATTGTAATCTGACAGAC 59.059 47.826 7.47 0.00 0.00 3.51
3368 6253 4.565444 CCACCCATTGTAATCTGACAGACA 60.565 45.833 7.47 0.00 0.00 3.41
3369 6254 5.003160 CACCCATTGTAATCTGACAGACAA 58.997 41.667 7.47 8.89 36.32 3.18
3370 6255 5.473162 CACCCATTGTAATCTGACAGACAAA 59.527 40.000 7.47 0.58 35.56 2.83
3371 6256 6.151648 CACCCATTGTAATCTGACAGACAAAT 59.848 38.462 7.47 2.96 35.56 2.32
3372 6257 6.375455 ACCCATTGTAATCTGACAGACAAATC 59.625 38.462 7.47 0.00 35.56 2.17
3373 6258 6.600822 CCCATTGTAATCTGACAGACAAATCT 59.399 38.462 7.47 0.00 35.56 2.40
3374 6259 7.201679 CCCATTGTAATCTGACAGACAAATCTC 60.202 40.741 7.47 0.00 35.56 2.75
3375 6260 7.551974 CCATTGTAATCTGACAGACAAATCTCT 59.448 37.037 7.47 0.00 35.56 3.10
3376 6261 9.591792 CATTGTAATCTGACAGACAAATCTCTA 57.408 33.333 7.47 0.00 35.56 2.43
3377 6262 9.814899 ATTGTAATCTGACAGACAAATCTCTAG 57.185 33.333 7.47 0.00 35.56 2.43
3378 6263 7.776107 TGTAATCTGACAGACAAATCTCTAGG 58.224 38.462 7.47 0.00 30.42 3.02
3379 6264 7.615757 TGTAATCTGACAGACAAATCTCTAGGA 59.384 37.037 7.47 0.00 30.42 2.94
3380 6265 7.673641 AATCTGACAGACAAATCTCTAGGAT 57.326 36.000 7.47 0.00 35.97 3.24
3381 6266 6.707440 TCTGACAGACAAATCTCTAGGATC 57.293 41.667 0.00 0.00 32.76 3.36
3382 6267 6.190587 TCTGACAGACAAATCTCTAGGATCA 58.809 40.000 0.00 0.00 32.76 2.92
3383 6268 6.320926 TCTGACAGACAAATCTCTAGGATCAG 59.679 42.308 0.00 0.00 32.76 2.90
3386 6271 5.049167 CAGACAAATCTCTAGGATCAGCAC 58.951 45.833 0.00 0.00 32.76 4.40
3389 6274 5.426504 ACAAATCTCTAGGATCAGCACTTG 58.573 41.667 0.00 0.00 32.76 3.16
3390 6275 4.686191 AATCTCTAGGATCAGCACTTGG 57.314 45.455 0.00 0.00 32.76 3.61
3392 6277 5.428800 AATCTCTAGGATCAGCACTTGGCT 61.429 45.833 0.00 0.00 43.79 4.75
3404 6289 2.507484 CACTTGGCTTGAATGACCAGA 58.493 47.619 0.00 0.00 34.28 3.86
3448 6333 4.023291 TGGAGTTCCCCTGCATTTTTATC 58.977 43.478 0.00 0.00 36.48 1.75
3456 6341 4.100035 CCCCTGCATTTTTATCTTCTTCCC 59.900 45.833 0.00 0.00 0.00 3.97
3476 6361 2.160417 CCGGTTTCTGATCTTGCTGAAC 59.840 50.000 0.00 0.00 0.00 3.18
3492 6420 4.099266 TGCTGAACTAACCTGCATTTTGTT 59.901 37.500 7.45 7.45 34.35 2.83
3493 6421 5.049828 GCTGAACTAACCTGCATTTTGTTT 58.950 37.500 8.64 0.00 0.00 2.83
3494 6422 5.050837 GCTGAACTAACCTGCATTTTGTTTG 60.051 40.000 8.64 4.74 0.00 2.93
3495 6423 6.214191 TGAACTAACCTGCATTTTGTTTGA 57.786 33.333 8.64 0.00 0.00 2.69
3496 6424 6.815089 TGAACTAACCTGCATTTTGTTTGAT 58.185 32.000 8.64 0.00 0.00 2.57
3497 6425 7.271511 TGAACTAACCTGCATTTTGTTTGATT 58.728 30.769 8.64 1.46 0.00 2.57
3498 6426 7.768120 TGAACTAACCTGCATTTTGTTTGATTT 59.232 29.630 8.64 0.00 0.00 2.17
3499 6427 7.481275 ACTAACCTGCATTTTGTTTGATTTG 57.519 32.000 0.00 0.00 0.00 2.32
3500 6428 4.816786 ACCTGCATTTTGTTTGATTTGC 57.183 36.364 0.00 0.00 0.00 3.68
3501 6429 3.565063 ACCTGCATTTTGTTTGATTTGCC 59.435 39.130 0.00 0.00 0.00 4.52
3502 6430 3.564644 CCTGCATTTTGTTTGATTTGCCA 59.435 39.130 0.00 0.00 0.00 4.92
3503 6431 4.529446 CTGCATTTTGTTTGATTTGCCAC 58.471 39.130 0.00 0.00 0.00 5.01
3504 6432 3.943381 TGCATTTTGTTTGATTTGCCACA 59.057 34.783 0.00 0.00 0.00 4.17
3505 6433 4.397103 TGCATTTTGTTTGATTTGCCACAA 59.603 33.333 0.00 0.00 0.00 3.33
3506 6434 5.106038 TGCATTTTGTTTGATTTGCCACAAA 60.106 32.000 0.00 0.00 37.35 2.83
3508 6436 6.237516 GCATTTTGTTTGATTTGCCACAAAAC 60.238 34.615 10.38 0.00 46.49 2.43
3509 6437 6.566197 TTTTGTTTGATTTGCCACAAAACT 57.434 29.167 5.22 0.00 41.77 2.66
3510 6438 7.672983 TTTTGTTTGATTTGCCACAAAACTA 57.327 28.000 5.22 0.00 41.77 2.24
3511 6439 7.856145 TTTGTTTGATTTGCCACAAAACTAT 57.144 28.000 0.00 0.00 36.44 2.12
3512 6440 7.475771 TTGTTTGATTTGCCACAAAACTATC 57.524 32.000 0.00 0.00 37.66 2.08
3513 6441 6.815089 TGTTTGATTTGCCACAAAACTATCT 58.185 32.000 0.00 0.00 37.66 1.98
3514 6442 7.271511 TGTTTGATTTGCCACAAAACTATCTT 58.728 30.769 0.00 0.00 37.66 2.40
3515 6443 7.437862 TGTTTGATTTGCCACAAAACTATCTTC 59.562 33.333 0.00 0.00 37.66 2.87
3516 6444 6.647334 TGATTTGCCACAAAACTATCTTCA 57.353 33.333 0.00 0.00 0.00 3.02
3517 6445 7.048629 TGATTTGCCACAAAACTATCTTCAA 57.951 32.000 0.00 0.00 0.00 2.69
3518 6446 7.669427 TGATTTGCCACAAAACTATCTTCAAT 58.331 30.769 0.00 0.00 0.00 2.57
3519 6447 7.599621 TGATTTGCCACAAAACTATCTTCAATG 59.400 33.333 0.00 0.00 0.00 2.82
3520 6448 4.808558 TGCCACAAAACTATCTTCAATGC 58.191 39.130 0.00 0.00 0.00 3.56
3551 6479 3.845781 TGAGAACTTCCTTCAGCTTGT 57.154 42.857 0.00 0.00 0.00 3.16
3559 6487 1.774254 TCCTTCAGCTTGTCCCTTTGA 59.226 47.619 0.00 0.00 0.00 2.69
3587 6515 0.184933 TTGAAACTGTCACCAGGGGG 59.815 55.000 0.00 0.00 43.36 5.40
3588 6516 0.696143 TGAAACTGTCACCAGGGGGA 60.696 55.000 0.00 0.00 43.36 4.81
3589 6517 0.476771 GAAACTGTCACCAGGGGGAA 59.523 55.000 0.00 0.00 43.36 3.97
3590 6518 0.930726 AAACTGTCACCAGGGGGAAA 59.069 50.000 0.00 0.00 43.36 3.13
3591 6519 0.478507 AACTGTCACCAGGGGGAAAG 59.521 55.000 6.20 6.20 43.36 2.62
3592 6520 1.380302 CTGTCACCAGGGGGAAAGG 59.620 63.158 0.00 0.00 38.05 3.11
3605 6533 1.767692 GAAAGGCTCCCCACCTGAA 59.232 57.895 0.00 0.00 37.67 3.02
3606 6534 0.332972 GAAAGGCTCCCCACCTGAAT 59.667 55.000 0.00 0.00 37.67 2.57
3607 6535 1.564348 GAAAGGCTCCCCACCTGAATA 59.436 52.381 0.00 0.00 37.67 1.75
3608 6536 0.919710 AAGGCTCCCCACCTGAATAC 59.080 55.000 0.00 0.00 37.67 1.89
3609 6537 1.146263 GGCTCCCCACCTGAATACG 59.854 63.158 0.00 0.00 0.00 3.06
3610 6538 1.146263 GCTCCCCACCTGAATACGG 59.854 63.158 0.00 0.00 0.00 4.02
3611 6539 1.623542 GCTCCCCACCTGAATACGGT 61.624 60.000 0.00 0.00 34.38 4.83
3621 6549 6.426937 CCCACCTGAATACGGTATATTTCAAG 59.573 42.308 0.22 0.00 32.37 3.02
3622 6550 7.214381 CCACCTGAATACGGTATATTTCAAGA 58.786 38.462 0.22 0.00 32.37 3.02
3623 6551 7.713507 CCACCTGAATACGGTATATTTCAAGAA 59.286 37.037 0.22 0.00 32.37 2.52
3655 6583 3.072476 ACATGGGAGTTTATGGGATACGG 59.928 47.826 0.00 0.00 37.60 4.02
3672 6600 1.206371 ACGGGAGGAAAGGTAATCACG 59.794 52.381 0.00 0.00 43.98 4.35
3693 6621 1.001378 CCACAAGCCGGCATAATTAGC 60.001 52.381 31.54 0.00 0.00 3.09
3694 6622 1.675483 CACAAGCCGGCATAATTAGCA 59.325 47.619 31.54 0.00 0.00 3.49
3695 6623 2.294233 CACAAGCCGGCATAATTAGCAT 59.706 45.455 31.54 0.00 0.00 3.79
3696 6624 3.501828 CACAAGCCGGCATAATTAGCATA 59.498 43.478 31.54 0.00 0.00 3.14
3697 6625 4.156556 CACAAGCCGGCATAATTAGCATAT 59.843 41.667 31.54 0.00 0.00 1.78
3698 6626 4.766891 ACAAGCCGGCATAATTAGCATATT 59.233 37.500 31.54 5.99 0.00 1.28
3699 6627 5.243730 ACAAGCCGGCATAATTAGCATATTT 59.756 36.000 31.54 5.48 0.00 1.40
3700 6628 5.982890 AGCCGGCATAATTAGCATATTTT 57.017 34.783 31.54 0.00 0.00 1.82
3701 6629 5.713025 AGCCGGCATAATTAGCATATTTTG 58.287 37.500 31.54 0.00 0.00 2.44
3702 6630 4.864247 GCCGGCATAATTAGCATATTTTGG 59.136 41.667 24.80 0.00 0.00 3.28
3703 6631 5.566627 GCCGGCATAATTAGCATATTTTGGT 60.567 40.000 24.80 0.00 39.88 3.67
3704 6632 6.349777 GCCGGCATAATTAGCATATTTTGGTA 60.350 38.462 24.80 0.00 37.26 3.25
3731 6659 7.848223 AAATGGCAAAATAATCTTGCTTACC 57.152 32.000 7.41 0.00 46.74 2.85
3732 6660 6.796785 ATGGCAAAATAATCTTGCTTACCT 57.203 33.333 7.41 0.00 46.74 3.08
3733 6661 6.207691 TGGCAAAATAATCTTGCTTACCTC 57.792 37.500 7.41 0.00 46.74 3.85
3734 6662 5.163663 TGGCAAAATAATCTTGCTTACCTCG 60.164 40.000 7.41 0.00 46.74 4.63
3735 6663 5.065988 GGCAAAATAATCTTGCTTACCTCGA 59.934 40.000 7.41 0.00 46.74 4.04
3736 6664 6.404293 GGCAAAATAATCTTGCTTACCTCGAA 60.404 38.462 7.41 0.00 46.74 3.71
3737 6665 7.027161 GCAAAATAATCTTGCTTACCTCGAAA 58.973 34.615 0.41 0.00 44.66 3.46
3738 6666 7.540745 GCAAAATAATCTTGCTTACCTCGAAAA 59.459 33.333 0.41 0.00 44.66 2.29
3739 6667 9.573133 CAAAATAATCTTGCTTACCTCGAAAAT 57.427 29.630 0.00 0.00 0.00 1.82
3740 6668 9.573133 AAAATAATCTTGCTTACCTCGAAAATG 57.427 29.630 0.00 0.00 0.00 2.32
3741 6669 8.506168 AATAATCTTGCTTACCTCGAAAATGA 57.494 30.769 0.00 0.00 0.00 2.57
3742 6670 5.803020 ATCTTGCTTACCTCGAAAATGAC 57.197 39.130 0.00 0.00 0.00 3.06
3743 6671 4.000988 TCTTGCTTACCTCGAAAATGACC 58.999 43.478 0.00 0.00 0.00 4.02
3744 6672 3.695830 TGCTTACCTCGAAAATGACCT 57.304 42.857 0.00 0.00 0.00 3.85
3745 6673 4.811969 TGCTTACCTCGAAAATGACCTA 57.188 40.909 0.00 0.00 0.00 3.08
3746 6674 5.155278 TGCTTACCTCGAAAATGACCTAA 57.845 39.130 0.00 0.00 0.00 2.69
3747 6675 5.553123 TGCTTACCTCGAAAATGACCTAAA 58.447 37.500 0.00 0.00 0.00 1.85
3748 6676 5.410439 TGCTTACCTCGAAAATGACCTAAAC 59.590 40.000 0.00 0.00 0.00 2.01
3749 6677 5.642491 GCTTACCTCGAAAATGACCTAAACT 59.358 40.000 0.00 0.00 0.00 2.66
3750 6678 6.148976 GCTTACCTCGAAAATGACCTAAACTT 59.851 38.462 0.00 0.00 0.00 2.66
3751 6679 7.332678 GCTTACCTCGAAAATGACCTAAACTTA 59.667 37.037 0.00 0.00 0.00 2.24
3752 6680 8.767478 TTACCTCGAAAATGACCTAAACTTAG 57.233 34.615 0.00 0.00 0.00 2.18
3753 6681 5.642491 ACCTCGAAAATGACCTAAACTTAGC 59.358 40.000 0.00 0.00 0.00 3.09
3754 6682 5.875359 CCTCGAAAATGACCTAAACTTAGCT 59.125 40.000 0.00 0.00 0.00 3.32
3755 6683 6.371825 CCTCGAAAATGACCTAAACTTAGCTT 59.628 38.462 0.00 0.00 0.00 3.74
3756 6684 7.548075 CCTCGAAAATGACCTAAACTTAGCTTA 59.452 37.037 0.00 0.00 0.00 3.09
3757 6685 9.099454 CTCGAAAATGACCTAAACTTAGCTTAT 57.901 33.333 0.00 0.00 0.00 1.73
3758 6686 9.444600 TCGAAAATGACCTAAACTTAGCTTATT 57.555 29.630 0.00 0.00 0.00 1.40
3763 6691 9.755122 AATGACCTAAACTTAGCTTATTTTCCT 57.245 29.630 0.00 0.00 0.00 3.36
3764 6692 8.788325 TGACCTAAACTTAGCTTATTTTCCTC 57.212 34.615 0.00 0.00 0.00 3.71
3765 6693 7.548075 TGACCTAAACTTAGCTTATTTTCCTCG 59.452 37.037 0.00 0.00 0.00 4.63
3766 6694 7.618137 ACCTAAACTTAGCTTATTTTCCTCGA 58.382 34.615 0.00 0.00 0.00 4.04
3767 6695 8.098912 ACCTAAACTTAGCTTATTTTCCTCGAA 58.901 33.333 0.00 0.00 0.00 3.71
3768 6696 8.943002 CCTAAACTTAGCTTATTTTCCTCGAAA 58.057 33.333 0.00 0.00 0.00 3.46
3783 6711 8.801882 TTTCCTCGAAAATGACATAATAACCT 57.198 30.769 0.00 0.00 0.00 3.50
3784 6712 8.801882 TTCCTCGAAAATGACATAATAACCTT 57.198 30.769 0.00 0.00 0.00 3.50
3785 6713 8.801882 TCCTCGAAAATGACATAATAACCTTT 57.198 30.769 0.00 0.00 0.00 3.11
3786 6714 8.889717 TCCTCGAAAATGACATAATAACCTTTC 58.110 33.333 0.00 0.00 0.00 2.62
3787 6715 8.893727 CCTCGAAAATGACATAATAACCTTTCT 58.106 33.333 0.00 0.00 0.00 2.52
3803 6731 9.753674 ATAACCTTTCTTAGATCCAAAATGACA 57.246 29.630 0.00 0.00 0.00 3.58
3804 6732 8.655935 AACCTTTCTTAGATCCAAAATGACAT 57.344 30.769 0.00 0.00 0.00 3.06
3805 6733 9.753674 AACCTTTCTTAGATCCAAAATGACATA 57.246 29.630 0.00 0.00 0.00 2.29
3806 6734 9.927081 ACCTTTCTTAGATCCAAAATGACATAT 57.073 29.630 0.00 0.00 0.00 1.78
3842 6770 5.998454 TCATTCTTAATGCTAGCTTGAGC 57.002 39.130 17.23 1.26 43.16 4.26
3843 6771 4.818546 TCATTCTTAATGCTAGCTTGAGCC 59.181 41.667 17.23 0.00 42.11 4.70
3844 6772 3.199880 TCTTAATGCTAGCTTGAGCCC 57.800 47.619 17.23 0.00 42.11 5.19
3845 6773 2.774234 TCTTAATGCTAGCTTGAGCCCT 59.226 45.455 17.23 0.00 42.11 5.19
3846 6774 3.200825 TCTTAATGCTAGCTTGAGCCCTT 59.799 43.478 17.23 3.00 42.11 3.95
3847 6775 4.408921 TCTTAATGCTAGCTTGAGCCCTTA 59.591 41.667 17.23 2.13 42.11 2.69
3848 6776 3.652057 AATGCTAGCTTGAGCCCTTAA 57.348 42.857 17.23 0.00 42.11 1.85
3849 6777 2.403252 TGCTAGCTTGAGCCCTTAAC 57.597 50.000 17.23 0.00 42.11 2.01
3850 6778 1.909302 TGCTAGCTTGAGCCCTTAACT 59.091 47.619 17.23 0.00 42.11 2.24
3851 6779 3.104512 TGCTAGCTTGAGCCCTTAACTA 58.895 45.455 17.23 0.00 42.11 2.24
3852 6780 3.517901 TGCTAGCTTGAGCCCTTAACTAA 59.482 43.478 17.23 0.00 42.11 2.24
3853 6781 4.164221 TGCTAGCTTGAGCCCTTAACTAAT 59.836 41.667 17.23 0.00 42.11 1.73
3854 6782 5.365605 TGCTAGCTTGAGCCCTTAACTAATA 59.634 40.000 17.23 0.00 42.11 0.98
3855 6783 6.043243 TGCTAGCTTGAGCCCTTAACTAATAT 59.957 38.462 17.23 0.00 42.11 1.28
3856 6784 6.937465 GCTAGCTTGAGCCCTTAACTAATATT 59.063 38.462 7.70 0.00 43.38 1.28
3857 6785 7.445707 GCTAGCTTGAGCCCTTAACTAATATTT 59.554 37.037 7.70 0.00 43.38 1.40
3858 6786 9.343539 CTAGCTTGAGCCCTTAACTAATATTTT 57.656 33.333 0.00 0.00 43.38 1.82
3859 6787 8.000780 AGCTTGAGCCCTTAACTAATATTTTG 57.999 34.615 0.00 0.00 43.38 2.44
3860 6788 7.615757 AGCTTGAGCCCTTAACTAATATTTTGT 59.384 33.333 0.00 0.00 43.38 2.83
3861 6789 8.251026 GCTTGAGCCCTTAACTAATATTTTGTT 58.749 33.333 0.00 2.76 34.31 2.83
3862 6790 9.788960 CTTGAGCCCTTAACTAATATTTTGTTC 57.211 33.333 9.00 0.00 0.00 3.18
3863 6791 8.288689 TGAGCCCTTAACTAATATTTTGTTCC 57.711 34.615 9.00 0.00 0.00 3.62
3864 6792 8.113462 TGAGCCCTTAACTAATATTTTGTTCCT 58.887 33.333 9.00 2.57 0.00 3.36
3865 6793 8.521170 AGCCCTTAACTAATATTTTGTTCCTC 57.479 34.615 9.00 0.19 0.00 3.71
3866 6794 8.336987 AGCCCTTAACTAATATTTTGTTCCTCT 58.663 33.333 9.00 1.81 0.00 3.69
3867 6795 8.622157 GCCCTTAACTAATATTTTGTTCCTCTC 58.378 37.037 9.00 0.00 0.00 3.20
3868 6796 9.907229 CCCTTAACTAATATTTTGTTCCTCTCT 57.093 33.333 9.00 0.00 0.00 3.10
3873 6801 9.883142 AACTAATATTTTGTTCCTCTCTCTCAG 57.117 33.333 0.00 0.00 0.00 3.35
3874 6802 8.482128 ACTAATATTTTGTTCCTCTCTCTCAGG 58.518 37.037 0.00 0.00 0.00 3.86
3875 6803 3.409026 TTTTGTTCCTCTCTCTCAGGC 57.591 47.619 0.00 0.00 0.00 4.85
3876 6804 0.891373 TTGTTCCTCTCTCTCAGGCG 59.109 55.000 0.00 0.00 0.00 5.52
3877 6805 1.140804 GTTCCTCTCTCTCAGGCGC 59.859 63.158 0.00 0.00 0.00 6.53
3878 6806 1.304464 TTCCTCTCTCTCAGGCGCA 60.304 57.895 10.83 0.00 0.00 6.09
3879 6807 1.318886 TTCCTCTCTCTCAGGCGCAG 61.319 60.000 10.83 0.00 0.00 5.18
3880 6808 2.051518 CCTCTCTCTCAGGCGCAGT 61.052 63.158 10.83 0.00 0.00 4.40
3881 6809 0.749818 CCTCTCTCTCAGGCGCAGTA 60.750 60.000 10.83 0.00 0.00 2.74
3882 6810 0.380378 CTCTCTCTCAGGCGCAGTAC 59.620 60.000 10.83 0.00 0.00 2.73
3883 6811 0.322546 TCTCTCTCAGGCGCAGTACA 60.323 55.000 10.83 0.00 0.00 2.90
3884 6812 0.528017 CTCTCTCAGGCGCAGTACAA 59.472 55.000 10.83 0.00 0.00 2.41
3885 6813 0.243907 TCTCTCAGGCGCAGTACAAC 59.756 55.000 10.83 0.00 0.00 3.32
3886 6814 0.038251 CTCTCAGGCGCAGTACAACA 60.038 55.000 10.83 0.00 0.00 3.33
3887 6815 0.391228 TCTCAGGCGCAGTACAACAA 59.609 50.000 10.83 0.00 0.00 2.83
3888 6816 0.792640 CTCAGGCGCAGTACAACAAG 59.207 55.000 10.83 0.00 0.00 3.16
3889 6817 0.391228 TCAGGCGCAGTACAACAAGA 59.609 50.000 10.83 0.00 0.00 3.02
3890 6818 1.202592 TCAGGCGCAGTACAACAAGAA 60.203 47.619 10.83 0.00 0.00 2.52
3891 6819 1.195448 CAGGCGCAGTACAACAAGAAG 59.805 52.381 10.83 0.00 0.00 2.85
3892 6820 0.110192 GGCGCAGTACAACAAGAAGC 60.110 55.000 10.83 0.00 0.00 3.86
3893 6821 0.110192 GCGCAGTACAACAAGAAGCC 60.110 55.000 0.30 0.00 0.00 4.35
3894 6822 1.512926 CGCAGTACAACAAGAAGCCT 58.487 50.000 0.00 0.00 0.00 4.58
3895 6823 1.195448 CGCAGTACAACAAGAAGCCTG 59.805 52.381 0.00 0.00 0.00 4.85
3896 6824 2.222027 GCAGTACAACAAGAAGCCTGT 58.778 47.619 0.00 0.00 0.00 4.00
3897 6825 2.031682 GCAGTACAACAAGAAGCCTGTG 60.032 50.000 0.00 0.00 0.00 3.66
3898 6826 2.031682 CAGTACAACAAGAAGCCTGTGC 60.032 50.000 0.00 0.00 37.95 4.57
3899 6827 1.266989 GTACAACAAGAAGCCTGTGCC 59.733 52.381 0.00 0.00 38.69 5.01
3900 6828 0.395586 ACAACAAGAAGCCTGTGCCA 60.396 50.000 0.00 0.00 38.69 4.92
3901 6829 0.746063 CAACAAGAAGCCTGTGCCAA 59.254 50.000 0.00 0.00 38.69 4.52
3902 6830 1.035139 AACAAGAAGCCTGTGCCAAG 58.965 50.000 0.00 0.00 38.69 3.61
3903 6831 0.106519 ACAAGAAGCCTGTGCCAAGT 60.107 50.000 0.00 0.00 38.69 3.16
3904 6832 0.595095 CAAGAAGCCTGTGCCAAGTC 59.405 55.000 0.00 0.00 38.69 3.01
3905 6833 0.475906 AAGAAGCCTGTGCCAAGTCT 59.524 50.000 0.00 0.00 38.69 3.24
3906 6834 0.250640 AGAAGCCTGTGCCAAGTCTG 60.251 55.000 0.00 0.00 38.69 3.51
3907 6835 0.536006 GAAGCCTGTGCCAAGTCTGT 60.536 55.000 0.00 0.00 38.69 3.41
3908 6836 0.106519 AAGCCTGTGCCAAGTCTGTT 60.107 50.000 0.00 0.00 38.69 3.16
3909 6837 0.536006 AGCCTGTGCCAAGTCTGTTC 60.536 55.000 0.00 0.00 38.69 3.18
3910 6838 1.845809 GCCTGTGCCAAGTCTGTTCG 61.846 60.000 0.00 0.00 0.00 3.95
3911 6839 0.249868 CCTGTGCCAAGTCTGTTCGA 60.250 55.000 0.00 0.00 0.00 3.71
3912 6840 0.861837 CTGTGCCAAGTCTGTTCGAC 59.138 55.000 0.00 0.00 43.17 4.20
3913 6841 0.531974 TGTGCCAAGTCTGTTCGACC 60.532 55.000 0.00 0.00 43.91 4.79
3914 6842 0.249911 GTGCCAAGTCTGTTCGACCT 60.250 55.000 0.00 0.00 43.91 3.85
3915 6843 0.033504 TGCCAAGTCTGTTCGACCTC 59.966 55.000 0.00 0.00 43.91 3.85
3916 6844 0.318762 GCCAAGTCTGTTCGACCTCT 59.681 55.000 0.00 0.00 43.91 3.69
3917 6845 1.544691 GCCAAGTCTGTTCGACCTCTA 59.455 52.381 0.00 0.00 43.91 2.43
3918 6846 2.166664 GCCAAGTCTGTTCGACCTCTAT 59.833 50.000 0.00 0.00 43.91 1.98
3919 6847 3.775202 CCAAGTCTGTTCGACCTCTATG 58.225 50.000 0.00 0.00 43.91 2.23
3920 6848 3.429547 CCAAGTCTGTTCGACCTCTATGG 60.430 52.174 0.00 0.00 43.91 2.74
3921 6849 1.751924 AGTCTGTTCGACCTCTATGGC 59.248 52.381 0.00 0.00 43.91 4.40
3922 6850 1.476891 GTCTGTTCGACCTCTATGGCA 59.523 52.381 0.00 0.00 40.22 4.92
3923 6851 2.101582 GTCTGTTCGACCTCTATGGCAT 59.898 50.000 4.88 4.88 40.22 4.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.871772 GCAGTTGCAGAATCAGCGT 59.128 52.632 0.00 0.00 41.59 5.07
1 2 4.759564 GCAGTTGCAGAATCAGCG 57.240 55.556 0.00 0.00 41.59 5.18
48 50 1.297664 AGCAGCATCGATCTTTCAGC 58.702 50.000 0.00 0.00 0.00 4.26
117 119 1.270785 TGACACACACACATAGGCAGG 60.271 52.381 0.00 0.00 0.00 4.85
118 120 2.168326 TGACACACACACATAGGCAG 57.832 50.000 0.00 0.00 0.00 4.85
187 189 3.084579 CCGCTGACACAATCTCGC 58.915 61.111 0.00 0.00 0.00 5.03
188 190 2.456119 GGCCGCTGACACAATCTCG 61.456 63.158 0.00 0.00 0.00 4.04
225 227 2.586425 AGTTGTATTTGCAGCAGGTGT 58.414 42.857 0.66 0.00 0.00 4.16
299 301 5.050490 CAGTTGCCACATAGGTATACTGAC 58.950 45.833 2.25 0.00 40.26 3.51
360 364 9.787435 AAAACAAACCATCTGTCTATTGTAGTA 57.213 29.630 0.00 0.00 31.33 1.82
361 365 8.691661 AAAACAAACCATCTGTCTATTGTAGT 57.308 30.769 0.00 0.00 31.33 2.73
362 366 9.612620 GAAAAACAAACCATCTGTCTATTGTAG 57.387 33.333 0.00 0.00 31.33 2.74
363 367 9.349713 AGAAAAACAAACCATCTGTCTATTGTA 57.650 29.630 0.00 0.00 31.33 2.41
364 368 8.237811 AGAAAAACAAACCATCTGTCTATTGT 57.762 30.769 0.00 0.00 32.78 2.71
365 369 9.185192 GAAGAAAAACAAACCATCTGTCTATTG 57.815 33.333 0.00 0.00 0.00 1.90
504 793 5.185249 CCTCTGTAGTAGGTTTCTAAGCACA 59.815 44.000 0.00 0.00 0.00 4.57
511 800 4.018960 TCGGTACCTCTGTAGTAGGTTTCT 60.019 45.833 10.90 0.00 45.26 2.52
576 865 1.878975 GCTACGAAGAGAAGCGGCC 60.879 63.158 0.00 0.00 0.00 6.13
640 929 0.739813 GAATGTAACGTCGGCTGCCT 60.740 55.000 17.92 0.00 0.00 4.75
648 937 3.059188 CAGGTGTGTTGGAATGTAACGTC 60.059 47.826 0.00 0.00 0.00 4.34
707 996 0.768221 AGGTGGGGTGAGAGAAGCAA 60.768 55.000 0.00 0.00 0.00 3.91
708 997 0.768221 AAGGTGGGGTGAGAGAAGCA 60.768 55.000 0.00 0.00 0.00 3.91
709 998 0.322008 CAAGGTGGGGTGAGAGAAGC 60.322 60.000 0.00 0.00 0.00 3.86
710 999 1.059913 ACAAGGTGGGGTGAGAGAAG 58.940 55.000 0.00 0.00 0.00 2.85
711 1000 2.409064 TACAAGGTGGGGTGAGAGAA 57.591 50.000 0.00 0.00 0.00 2.87
713 1002 2.305927 ACATTACAAGGTGGGGTGAGAG 59.694 50.000 0.00 0.00 0.00 3.20
715 1004 2.879103 ACATTACAAGGTGGGGTGAG 57.121 50.000 0.00 0.00 0.00 3.51
716 1005 2.980379 TGTACATTACAAGGTGGGGTGA 59.020 45.455 0.00 0.00 35.38 4.02
721 1019 6.811253 TTAAAGCTGTACATTACAAGGTGG 57.189 37.500 0.00 0.00 38.38 4.61
735 1033 9.424319 CCACATAAGTATATCGATTAAAGCTGT 57.576 33.333 1.71 0.00 0.00 4.40
736 1034 8.383619 GCCACATAAGTATATCGATTAAAGCTG 58.616 37.037 1.71 0.00 0.00 4.24
740 1038 9.772973 AGTTGCCACATAAGTATATCGATTAAA 57.227 29.630 1.71 0.00 0.00 1.52
743 1041 6.147821 GCAGTTGCCACATAAGTATATCGATT 59.852 38.462 1.71 0.00 34.31 3.34
744 1042 5.639506 GCAGTTGCCACATAAGTATATCGAT 59.360 40.000 2.16 2.16 34.31 3.59
746 1044 5.269459 GCAGTTGCCACATAAGTATATCG 57.731 43.478 0.00 0.00 34.31 2.92
816 1115 8.767436 AGAGGTAAAAGAAAGCATCTCTCTAAT 58.233 33.333 6.14 0.00 37.42 1.73
860 1159 6.408092 CCAGTAAGGTGTAGAATATGGCAAGA 60.408 42.308 0.00 0.00 0.00 3.02
864 1163 4.102681 ACCCAGTAAGGTGTAGAATATGGC 59.897 45.833 0.00 0.00 39.24 4.40
924 1232 2.636830 AGTACACTGCCTGCATTGATC 58.363 47.619 15.27 8.04 32.08 2.92
942 1250 5.148651 ACCGCTGTTGTAGATTTCTAAGT 57.851 39.130 0.00 0.00 0.00 2.24
1020 1769 6.542735 CACCCCTATAAAACTCTTTAGGAAGC 59.457 42.308 0.00 0.00 30.59 3.86
1146 1919 4.270084 CCAAATTGCATGTCATTCATCTGC 59.730 41.667 0.00 0.00 34.09 4.26
1333 4131 2.355009 GCAAAGCCAGCAACCACG 60.355 61.111 0.00 0.00 0.00 4.94
1336 4134 1.006922 GACTGCAAAGCCAGCAACC 60.007 57.895 0.00 0.00 42.17 3.77
1360 4158 3.081804 CGCTTCCTCCAGTTTACCAATT 58.918 45.455 0.00 0.00 0.00 2.32
1502 4342 0.179156 GCCGCACTCACATTTGGATG 60.179 55.000 0.00 0.00 39.25 3.51
1562 4406 8.530269 AACTTACTAGGTTAACAACAGAATCG 57.470 34.615 8.10 0.00 0.00 3.34
1726 4583 1.597854 CCTCGAAAGCACTGCCACA 60.598 57.895 0.00 0.00 0.00 4.17
1875 4732 3.321497 GTTCAGAGTCTGCTTTGACGAT 58.679 45.455 15.72 0.00 41.47 3.73
2049 4906 4.959596 GCCTCGAGGATCTGCCGC 62.960 72.222 35.69 12.98 43.43 6.53
2109 4975 2.885113 CCTCGCATCAGACACGGA 59.115 61.111 0.00 0.00 0.00 4.69
2224 5090 1.078759 CTAGGTTTGCGAGGTCTGCG 61.079 60.000 0.00 0.00 34.24 5.18
2233 5099 0.433492 CGTCGTTCACTAGGTTTGCG 59.567 55.000 0.00 0.00 0.00 4.85
2257 5123 1.077858 CTCCCTGGAAGCCTTGAGC 60.078 63.158 0.00 0.00 44.25 4.26
2275 5141 2.664398 CCAACAGCATTTGCCCCC 59.336 61.111 0.00 0.00 43.38 5.40
2371 5237 0.248949 GGTACGCGGTCATCTTCCTC 60.249 60.000 12.47 0.00 0.00 3.71
2464 5330 1.149101 TGCCAAGAGAGTTTCCCCTT 58.851 50.000 0.00 0.00 0.00 3.95
2588 5454 0.324460 ACCCCGGTCTCTCCAACTAG 60.324 60.000 0.00 0.00 35.57 2.57
2791 5676 4.322804 AGAATCGTTTTCGCGTTACTGTAG 59.677 41.667 5.77 0.00 43.73 2.74
2974 5859 1.144936 CTACACTGCTAGGCCAGGC 59.855 63.158 5.01 1.26 37.16 4.85
2984 5869 2.464157 AACTTCTGCCTCTACACTGC 57.536 50.000 0.00 0.00 0.00 4.40
2994 5879 6.739112 AGTATCAGAAAACAAAACTTCTGCC 58.261 36.000 6.89 0.00 45.38 4.85
3004 5889 6.942532 AGCAACAGAAGTATCAGAAAACAA 57.057 33.333 0.00 0.00 0.00 2.83
3018 5903 2.216046 CTCTCTGTGCAAGCAACAGAA 58.784 47.619 19.88 13.46 39.62 3.02
3020 5905 1.263484 CACTCTCTGTGCAAGCAACAG 59.737 52.381 14.36 14.36 40.06 3.16
3062 5947 9.212641 CTCTTCAGACTTGAGAAATACAATTCA 57.787 33.333 0.00 0.00 34.15 2.57
3068 5953 6.926272 ACACACTCTTCAGACTTGAGAAATAC 59.074 38.462 0.00 0.00 34.15 1.89
3069 5954 7.055667 ACACACTCTTCAGACTTGAGAAATA 57.944 36.000 0.00 0.00 34.15 1.40
3089 5974 4.125703 GTTTGATTGATTTGGGCAACACA 58.874 39.130 0.00 0.00 39.74 3.72
3176 6061 3.502191 TTGTGTTGTTGCCTGTTCTTC 57.498 42.857 0.00 0.00 0.00 2.87
3194 6079 6.571605 TGCCACAAATACATGGTGATAATTG 58.428 36.000 0.00 0.00 38.34 2.32
3197 6082 5.008514 CGATGCCACAAATACATGGTGATAA 59.991 40.000 0.00 0.00 38.34 1.75
3295 6180 3.181482 CGCTCAGATGATACTGAACTGGT 60.181 47.826 0.00 0.00 44.62 4.00
3297 6182 2.793790 GCGCTCAGATGATACTGAACTG 59.206 50.000 0.00 0.00 44.62 3.16
3298 6183 2.542618 CGCGCTCAGATGATACTGAACT 60.543 50.000 5.56 0.00 44.62 3.01
3299 6184 1.783711 CGCGCTCAGATGATACTGAAC 59.216 52.381 5.56 0.00 44.62 3.18
3300 6185 1.676006 TCGCGCTCAGATGATACTGAA 59.324 47.619 5.56 0.00 44.62 3.02
3301 6186 1.308998 TCGCGCTCAGATGATACTGA 58.691 50.000 5.56 0.00 43.39 3.41
3302 6187 2.125461 TTCGCGCTCAGATGATACTG 57.875 50.000 5.56 0.00 39.02 2.74
3303 6188 2.359214 TCTTTCGCGCTCAGATGATACT 59.641 45.455 5.56 0.00 0.00 2.12
3304 6189 2.732366 TCTTTCGCGCTCAGATGATAC 58.268 47.619 5.56 0.00 0.00 2.24
3305 6190 3.650070 ATCTTTCGCGCTCAGATGATA 57.350 42.857 5.56 0.00 0.00 2.15
3306 6191 2.522836 ATCTTTCGCGCTCAGATGAT 57.477 45.000 5.56 0.00 0.00 2.45
3307 6192 2.099098 TGTATCTTTCGCGCTCAGATGA 59.901 45.455 19.01 5.43 0.00 2.92
3308 6193 2.463876 TGTATCTTTCGCGCTCAGATG 58.536 47.619 19.01 0.00 0.00 2.90
3309 6194 2.871182 TGTATCTTTCGCGCTCAGAT 57.129 45.000 5.56 15.77 0.00 2.90
3310 6195 2.647529 TTGTATCTTTCGCGCTCAGA 57.352 45.000 5.56 3.97 0.00 3.27
3311 6196 3.933155 AATTGTATCTTTCGCGCTCAG 57.067 42.857 5.56 0.00 0.00 3.35
3312 6197 5.788055 TTTAATTGTATCTTTCGCGCTCA 57.212 34.783 5.56 0.00 0.00 4.26
3313 6198 6.140737 CCATTTTAATTGTATCTTTCGCGCTC 59.859 38.462 5.56 0.00 0.00 5.03
3314 6199 5.971202 CCATTTTAATTGTATCTTTCGCGCT 59.029 36.000 5.56 0.00 0.00 5.92
3315 6200 5.741982 ACCATTTTAATTGTATCTTTCGCGC 59.258 36.000 0.00 0.00 0.00 6.86
3316 6201 7.483375 TGAACCATTTTAATTGTATCTTTCGCG 59.517 33.333 0.00 0.00 0.00 5.87
3317 6202 8.682128 TGAACCATTTTAATTGTATCTTTCGC 57.318 30.769 0.00 0.00 0.00 4.70
3338 6223 5.242838 TCAGATTACAATGGGTGGTTTGAAC 59.757 40.000 0.00 0.00 0.00 3.18
3339 6224 5.242838 GTCAGATTACAATGGGTGGTTTGAA 59.757 40.000 0.00 0.00 0.00 2.69
3340 6225 4.764823 GTCAGATTACAATGGGTGGTTTGA 59.235 41.667 0.00 0.00 0.00 2.69
3341 6226 4.522405 TGTCAGATTACAATGGGTGGTTTG 59.478 41.667 0.00 0.00 0.00 2.93
3342 6227 4.735369 TGTCAGATTACAATGGGTGGTTT 58.265 39.130 0.00 0.00 0.00 3.27
3343 6228 4.042809 TCTGTCAGATTACAATGGGTGGTT 59.957 41.667 0.00 0.00 0.00 3.67
3344 6229 3.587061 TCTGTCAGATTACAATGGGTGGT 59.413 43.478 0.00 0.00 0.00 4.16
3345 6230 3.941483 GTCTGTCAGATTACAATGGGTGG 59.059 47.826 5.68 0.00 0.00 4.61
3346 6231 4.578871 TGTCTGTCAGATTACAATGGGTG 58.421 43.478 5.68 0.00 0.00 4.61
3347 6232 4.908601 TGTCTGTCAGATTACAATGGGT 57.091 40.909 5.68 0.00 0.00 4.51
3348 6233 6.600822 AGATTTGTCTGTCAGATTACAATGGG 59.399 38.462 5.68 0.00 32.31 4.00
3349 6234 7.551974 AGAGATTTGTCTGTCAGATTACAATGG 59.448 37.037 5.68 0.00 32.31 3.16
3350 6235 8.489990 AGAGATTTGTCTGTCAGATTACAATG 57.510 34.615 5.68 0.00 32.31 2.82
3351 6236 9.814899 CTAGAGATTTGTCTGTCAGATTACAAT 57.185 33.333 5.68 2.61 32.31 2.71
3352 6237 8.253810 CCTAGAGATTTGTCTGTCAGATTACAA 58.746 37.037 5.68 3.72 0.00 2.41
3353 6238 7.615757 TCCTAGAGATTTGTCTGTCAGATTACA 59.384 37.037 5.68 0.00 0.00 2.41
3354 6239 8.001881 TCCTAGAGATTTGTCTGTCAGATTAC 57.998 38.462 5.68 0.00 0.00 1.89
3355 6240 8.774546 ATCCTAGAGATTTGTCTGTCAGATTA 57.225 34.615 5.68 0.00 0.00 1.75
3356 6241 7.344093 TGATCCTAGAGATTTGTCTGTCAGATT 59.656 37.037 5.68 0.00 34.42 2.40
3357 6242 6.838090 TGATCCTAGAGATTTGTCTGTCAGAT 59.162 38.462 5.68 0.00 34.42 2.90
3358 6243 6.190587 TGATCCTAGAGATTTGTCTGTCAGA 58.809 40.000 0.00 0.00 34.42 3.27
3359 6244 6.462552 TGATCCTAGAGATTTGTCTGTCAG 57.537 41.667 0.00 0.00 34.42 3.51
3360 6245 5.163468 GCTGATCCTAGAGATTTGTCTGTCA 60.163 44.000 0.00 0.00 34.42 3.58
3361 6246 5.163468 TGCTGATCCTAGAGATTTGTCTGTC 60.163 44.000 0.00 0.00 34.42 3.51
3362 6247 4.713814 TGCTGATCCTAGAGATTTGTCTGT 59.286 41.667 0.00 0.00 34.42 3.41
3363 6248 5.049167 GTGCTGATCCTAGAGATTTGTCTG 58.951 45.833 0.00 0.00 34.42 3.51
3364 6249 4.961730 AGTGCTGATCCTAGAGATTTGTCT 59.038 41.667 0.00 0.00 34.42 3.41
3365 6250 5.275067 AGTGCTGATCCTAGAGATTTGTC 57.725 43.478 0.00 0.00 34.42 3.18
3366 6251 5.426504 CAAGTGCTGATCCTAGAGATTTGT 58.573 41.667 0.00 0.00 34.42 2.83
3367 6252 4.815308 CCAAGTGCTGATCCTAGAGATTTG 59.185 45.833 0.00 0.00 34.42 2.32
3368 6253 4.685575 GCCAAGTGCTGATCCTAGAGATTT 60.686 45.833 0.00 0.00 33.89 2.17
3369 6254 3.181456 GCCAAGTGCTGATCCTAGAGATT 60.181 47.826 0.00 0.00 33.89 2.40
3370 6255 2.368221 GCCAAGTGCTGATCCTAGAGAT 59.632 50.000 0.00 0.00 35.68 2.75
3371 6256 1.759445 GCCAAGTGCTGATCCTAGAGA 59.241 52.381 0.00 0.00 36.87 3.10
3372 6257 2.237393 GCCAAGTGCTGATCCTAGAG 57.763 55.000 0.00 0.00 36.87 2.43
3383 6268 0.961019 TGGTCATTCAAGCCAAGTGC 59.039 50.000 0.00 0.00 41.71 4.40
3386 6271 4.589216 TTTTCTGGTCATTCAAGCCAAG 57.411 40.909 0.00 0.00 0.00 3.61
3389 6274 4.550422 GAGTTTTTCTGGTCATTCAAGCC 58.450 43.478 0.00 0.00 0.00 4.35
3390 6275 4.037923 TGGAGTTTTTCTGGTCATTCAAGC 59.962 41.667 0.00 0.00 0.00 4.01
3392 6277 5.509501 GCATGGAGTTTTTCTGGTCATTCAA 60.510 40.000 0.00 0.00 0.00 2.69
3404 6289 5.826737 CCATAGAGATCTGCATGGAGTTTTT 59.173 40.000 20.65 0.00 40.37 1.94
3448 6333 3.618690 AGATCAGAAACCGGGAAGAAG 57.381 47.619 6.32 0.00 0.00 2.85
3456 6341 3.070018 AGTTCAGCAAGATCAGAAACCG 58.930 45.455 0.00 0.00 0.00 4.44
3476 6361 6.365050 GCAAATCAAACAAAATGCAGGTTAG 58.635 36.000 0.00 0.00 34.10 2.34
3492 6420 7.048629 TGAAGATAGTTTTGTGGCAAATCAA 57.951 32.000 0.00 0.00 0.00 2.57
3493 6421 6.647334 TGAAGATAGTTTTGTGGCAAATCA 57.353 33.333 0.00 0.00 0.00 2.57
3494 6422 7.412237 GCATTGAAGATAGTTTTGTGGCAAATC 60.412 37.037 0.00 0.00 0.00 2.17
3495 6423 6.369615 GCATTGAAGATAGTTTTGTGGCAAAT 59.630 34.615 0.00 0.00 0.00 2.32
3496 6424 5.695816 GCATTGAAGATAGTTTTGTGGCAAA 59.304 36.000 0.00 0.00 0.00 3.68
3497 6425 5.010922 AGCATTGAAGATAGTTTTGTGGCAA 59.989 36.000 0.00 0.00 0.00 4.52
3498 6426 4.523943 AGCATTGAAGATAGTTTTGTGGCA 59.476 37.500 0.00 0.00 0.00 4.92
3499 6427 5.064441 AGCATTGAAGATAGTTTTGTGGC 57.936 39.130 0.00 0.00 0.00 5.01
3515 6443 6.330791 AGTTCTCAAACCGCTCAAGCATTG 62.331 45.833 2.50 4.65 41.15 2.82
3516 6444 1.896220 TCTCAAACCGCTCAAGCATT 58.104 45.000 2.50 0.00 42.21 3.56
3517 6445 1.537202 GTTCTCAAACCGCTCAAGCAT 59.463 47.619 2.50 0.00 42.21 3.79
3518 6446 0.944386 GTTCTCAAACCGCTCAAGCA 59.056 50.000 2.50 0.00 42.21 3.91
3519 6447 1.230324 AGTTCTCAAACCGCTCAAGC 58.770 50.000 0.00 0.00 35.92 4.01
3520 6448 2.224314 GGAAGTTCTCAAACCGCTCAAG 59.776 50.000 2.25 0.00 35.92 3.02
3587 6515 0.332972 ATTCAGGTGGGGAGCCTTTC 59.667 55.000 0.00 0.00 33.31 2.62
3588 6516 1.285078 GTATTCAGGTGGGGAGCCTTT 59.715 52.381 0.00 0.00 33.31 3.11
3589 6517 0.919710 GTATTCAGGTGGGGAGCCTT 59.080 55.000 0.00 0.00 33.31 4.35
3590 6518 1.338136 CGTATTCAGGTGGGGAGCCT 61.338 60.000 0.00 0.00 36.66 4.58
3591 6519 1.146263 CGTATTCAGGTGGGGAGCC 59.854 63.158 0.00 0.00 0.00 4.70
3592 6520 1.146263 CCGTATTCAGGTGGGGAGC 59.854 63.158 0.00 0.00 0.00 4.70
3655 6583 1.065709 TGGCGTGATTACCTTTCCTCC 60.066 52.381 0.00 0.00 0.00 4.30
3713 6641 8.964420 TTTTCGAGGTAAGCAAGATTATTTTG 57.036 30.769 0.00 0.00 0.00 2.44
3714 6642 9.573133 CATTTTCGAGGTAAGCAAGATTATTTT 57.427 29.630 0.00 0.00 0.00 1.82
3715 6643 8.956426 TCATTTTCGAGGTAAGCAAGATTATTT 58.044 29.630 0.00 0.00 0.00 1.40
3716 6644 8.398665 GTCATTTTCGAGGTAAGCAAGATTATT 58.601 33.333 0.00 0.00 0.00 1.40
3717 6645 7.012421 GGTCATTTTCGAGGTAAGCAAGATTAT 59.988 37.037 0.00 0.00 0.00 1.28
3718 6646 6.315393 GGTCATTTTCGAGGTAAGCAAGATTA 59.685 38.462 0.00 0.00 0.00 1.75
3719 6647 5.123979 GGTCATTTTCGAGGTAAGCAAGATT 59.876 40.000 0.00 0.00 0.00 2.40
3720 6648 4.636206 GGTCATTTTCGAGGTAAGCAAGAT 59.364 41.667 0.00 0.00 0.00 2.40
3721 6649 4.000988 GGTCATTTTCGAGGTAAGCAAGA 58.999 43.478 0.00 0.00 0.00 3.02
3722 6650 4.003648 AGGTCATTTTCGAGGTAAGCAAG 58.996 43.478 0.00 0.00 0.00 4.01
3723 6651 4.015872 AGGTCATTTTCGAGGTAAGCAA 57.984 40.909 0.00 0.00 0.00 3.91
3724 6652 3.695830 AGGTCATTTTCGAGGTAAGCA 57.304 42.857 0.00 0.00 0.00 3.91
3725 6653 5.642491 AGTTTAGGTCATTTTCGAGGTAAGC 59.358 40.000 0.00 0.00 0.00 3.09
3726 6654 7.668525 AAGTTTAGGTCATTTTCGAGGTAAG 57.331 36.000 0.00 0.00 0.00 2.34
3727 6655 7.332678 GCTAAGTTTAGGTCATTTTCGAGGTAA 59.667 37.037 1.44 0.00 0.00 2.85
3728 6656 6.815142 GCTAAGTTTAGGTCATTTTCGAGGTA 59.185 38.462 1.44 0.00 0.00 3.08
3729 6657 5.642491 GCTAAGTTTAGGTCATTTTCGAGGT 59.358 40.000 1.44 0.00 0.00 3.85
3730 6658 5.875359 AGCTAAGTTTAGGTCATTTTCGAGG 59.125 40.000 0.00 0.00 36.87 4.63
3731 6659 6.969828 AGCTAAGTTTAGGTCATTTTCGAG 57.030 37.500 0.00 0.00 36.87 4.04
3732 6660 9.444600 AATAAGCTAAGTTTAGGTCATTTTCGA 57.555 29.630 4.27 0.00 40.32 3.71
3737 6665 9.755122 AGGAAAATAAGCTAAGTTTAGGTCATT 57.245 29.630 4.27 0.00 40.32 2.57
3738 6666 9.397280 GAGGAAAATAAGCTAAGTTTAGGTCAT 57.603 33.333 4.27 0.00 40.32 3.06
3739 6667 7.548075 CGAGGAAAATAAGCTAAGTTTAGGTCA 59.452 37.037 4.27 0.00 40.32 4.02
3740 6668 7.763071 TCGAGGAAAATAAGCTAAGTTTAGGTC 59.237 37.037 4.27 0.00 40.32 3.85
3741 6669 7.618137 TCGAGGAAAATAAGCTAAGTTTAGGT 58.382 34.615 0.00 0.00 42.78 3.08
3742 6670 8.488651 TTCGAGGAAAATAAGCTAAGTTTAGG 57.511 34.615 0.00 0.00 0.00 2.69
3745 6673 9.626045 CATTTTCGAGGAAAATAAGCTAAGTTT 57.374 29.630 14.03 0.00 46.37 2.66
3746 6674 9.010029 TCATTTTCGAGGAAAATAAGCTAAGTT 57.990 29.630 14.03 0.00 46.37 2.66
3747 6675 8.451748 GTCATTTTCGAGGAAAATAAGCTAAGT 58.548 33.333 14.03 0.00 46.37 2.24
3748 6676 8.450964 TGTCATTTTCGAGGAAAATAAGCTAAG 58.549 33.333 14.03 3.44 46.37 2.18
3749 6677 8.330466 TGTCATTTTCGAGGAAAATAAGCTAA 57.670 30.769 14.03 0.00 46.37 3.09
3750 6678 7.915293 TGTCATTTTCGAGGAAAATAAGCTA 57.085 32.000 14.03 0.88 46.37 3.32
3751 6679 6.817765 TGTCATTTTCGAGGAAAATAAGCT 57.182 33.333 14.03 0.00 46.37 3.74
3752 6680 9.736023 ATTATGTCATTTTCGAGGAAAATAAGC 57.264 29.630 14.03 9.07 46.37 3.09
3757 6685 9.238368 AGGTTATTATGTCATTTTCGAGGAAAA 57.762 29.630 6.05 6.05 44.04 2.29
3758 6686 8.801882 AGGTTATTATGTCATTTTCGAGGAAA 57.198 30.769 0.00 0.00 0.00 3.13
3759 6687 8.801882 AAGGTTATTATGTCATTTTCGAGGAA 57.198 30.769 0.00 0.00 0.00 3.36
3760 6688 8.801882 AAAGGTTATTATGTCATTTTCGAGGA 57.198 30.769 0.00 0.00 0.00 3.71
3761 6689 8.893727 AGAAAGGTTATTATGTCATTTTCGAGG 58.106 33.333 0.00 0.00 0.00 4.63
3777 6705 9.753674 TGTCATTTTGGATCTAAGAAAGGTTAT 57.246 29.630 0.00 0.00 0.00 1.89
3778 6706 9.753674 ATGTCATTTTGGATCTAAGAAAGGTTA 57.246 29.630 0.00 0.00 0.00 2.85
3779 6707 8.655935 ATGTCATTTTGGATCTAAGAAAGGTT 57.344 30.769 0.00 0.00 0.00 3.50
3780 6708 9.927081 ATATGTCATTTTGGATCTAAGAAAGGT 57.073 29.630 0.00 0.00 0.00 3.50
3816 6744 8.728833 GCTCAAGCTAGCATTAAGAATGATATT 58.271 33.333 18.83 0.00 42.30 1.28
3817 6745 7.336427 GGCTCAAGCTAGCATTAAGAATGATAT 59.664 37.037 18.83 0.00 44.64 1.63
3818 6746 6.652481 GGCTCAAGCTAGCATTAAGAATGATA 59.348 38.462 18.83 0.56 44.64 2.15
3819 6747 5.472820 GGCTCAAGCTAGCATTAAGAATGAT 59.527 40.000 18.83 0.00 44.64 2.45
3820 6748 4.818546 GGCTCAAGCTAGCATTAAGAATGA 59.181 41.667 18.83 6.86 44.64 2.57
3821 6749 4.023365 GGGCTCAAGCTAGCATTAAGAATG 60.023 45.833 18.83 2.85 44.64 2.67
3822 6750 4.140536 GGGCTCAAGCTAGCATTAAGAAT 58.859 43.478 18.83 0.00 44.64 2.40
3823 6751 3.200825 AGGGCTCAAGCTAGCATTAAGAA 59.799 43.478 18.83 0.00 44.64 2.52
3824 6752 2.774234 AGGGCTCAAGCTAGCATTAAGA 59.226 45.455 18.83 6.00 44.64 2.10
3825 6753 3.205784 AGGGCTCAAGCTAGCATTAAG 57.794 47.619 18.83 9.56 44.64 1.85
3826 6754 3.652057 AAGGGCTCAAGCTAGCATTAA 57.348 42.857 18.83 0.00 44.64 1.40
3827 6755 4.164221 AGTTAAGGGCTCAAGCTAGCATTA 59.836 41.667 18.83 6.16 44.64 1.90
3828 6756 3.054065 AGTTAAGGGCTCAAGCTAGCATT 60.054 43.478 18.83 5.54 44.64 3.56
3829 6757 2.507471 AGTTAAGGGCTCAAGCTAGCAT 59.493 45.455 18.83 0.65 44.64 3.79
3830 6758 1.909302 AGTTAAGGGCTCAAGCTAGCA 59.091 47.619 18.83 0.00 44.64 3.49
3831 6759 2.700722 AGTTAAGGGCTCAAGCTAGC 57.299 50.000 6.62 6.62 41.99 3.42
3832 6760 8.910351 AAATATTAGTTAAGGGCTCAAGCTAG 57.090 34.615 1.46 0.00 41.70 3.42
3833 6761 9.120538 CAAAATATTAGTTAAGGGCTCAAGCTA 57.879 33.333 1.46 0.00 41.70 3.32
3834 6762 7.615757 ACAAAATATTAGTTAAGGGCTCAAGCT 59.384 33.333 1.46 0.00 41.70 3.74
3835 6763 7.772166 ACAAAATATTAGTTAAGGGCTCAAGC 58.228 34.615 0.00 0.00 41.14 4.01
3836 6764 9.788960 GAACAAAATATTAGTTAAGGGCTCAAG 57.211 33.333 6.27 0.00 0.00 3.02
3837 6765 8.745590 GGAACAAAATATTAGTTAAGGGCTCAA 58.254 33.333 6.27 0.00 0.00 3.02
3838 6766 8.113462 AGGAACAAAATATTAGTTAAGGGCTCA 58.887 33.333 6.27 0.00 0.00 4.26
3839 6767 8.521170 AGGAACAAAATATTAGTTAAGGGCTC 57.479 34.615 6.27 0.00 0.00 4.70
3840 6768 8.336987 AGAGGAACAAAATATTAGTTAAGGGCT 58.663 33.333 6.27 0.22 0.00 5.19
3841 6769 8.521170 AGAGGAACAAAATATTAGTTAAGGGC 57.479 34.615 6.27 0.00 0.00 5.19
3842 6770 9.907229 AGAGAGGAACAAAATATTAGTTAAGGG 57.093 33.333 6.27 0.00 0.00 3.95
3847 6775 9.883142 CTGAGAGAGAGGAACAAAATATTAGTT 57.117 33.333 6.04 6.04 0.00 2.24
3848 6776 8.482128 CCTGAGAGAGAGGAACAAAATATTAGT 58.518 37.037 0.00 0.00 31.48 2.24
3849 6777 7.440856 GCCTGAGAGAGAGGAACAAAATATTAG 59.559 40.741 0.00 0.00 31.48 1.73
3850 6778 7.275920 GCCTGAGAGAGAGGAACAAAATATTA 58.724 38.462 0.00 0.00 31.48 0.98
3851 6779 6.118852 GCCTGAGAGAGAGGAACAAAATATT 58.881 40.000 0.00 0.00 31.48 1.28
3852 6780 5.679601 GCCTGAGAGAGAGGAACAAAATAT 58.320 41.667 0.00 0.00 31.48 1.28
3853 6781 4.382040 CGCCTGAGAGAGAGGAACAAAATA 60.382 45.833 0.00 0.00 31.48 1.40
3854 6782 3.618507 CGCCTGAGAGAGAGGAACAAAAT 60.619 47.826 0.00 0.00 31.48 1.82
3855 6783 2.289072 CGCCTGAGAGAGAGGAACAAAA 60.289 50.000 0.00 0.00 31.48 2.44
3856 6784 1.273606 CGCCTGAGAGAGAGGAACAAA 59.726 52.381 0.00 0.00 31.48 2.83
3857 6785 0.891373 CGCCTGAGAGAGAGGAACAA 59.109 55.000 0.00 0.00 31.48 2.83
3858 6786 1.599606 GCGCCTGAGAGAGAGGAACA 61.600 60.000 0.00 0.00 31.48 3.18
3859 6787 1.140804 GCGCCTGAGAGAGAGGAAC 59.859 63.158 0.00 0.00 31.48 3.62
3860 6788 1.304464 TGCGCCTGAGAGAGAGGAA 60.304 57.895 4.18 0.00 31.48 3.36
3861 6789 1.752310 CTGCGCCTGAGAGAGAGGA 60.752 63.158 4.18 0.00 31.48 3.71
3862 6790 0.749818 TACTGCGCCTGAGAGAGAGG 60.750 60.000 4.18 0.00 0.00 3.69
3863 6791 0.380378 GTACTGCGCCTGAGAGAGAG 59.620 60.000 4.18 0.00 0.00 3.20
3864 6792 0.322546 TGTACTGCGCCTGAGAGAGA 60.323 55.000 4.18 0.00 0.00 3.10
3865 6793 0.528017 TTGTACTGCGCCTGAGAGAG 59.472 55.000 4.18 0.00 0.00 3.20
3866 6794 0.243907 GTTGTACTGCGCCTGAGAGA 59.756 55.000 4.18 0.00 0.00 3.10
3867 6795 0.038251 TGTTGTACTGCGCCTGAGAG 60.038 55.000 4.18 0.00 0.00 3.20
3868 6796 0.391228 TTGTTGTACTGCGCCTGAGA 59.609 50.000 4.18 0.00 0.00 3.27
3869 6797 0.792640 CTTGTTGTACTGCGCCTGAG 59.207 55.000 4.18 0.00 0.00 3.35
3870 6798 0.391228 TCTTGTTGTACTGCGCCTGA 59.609 50.000 4.18 0.00 0.00 3.86
3871 6799 1.195448 CTTCTTGTTGTACTGCGCCTG 59.805 52.381 4.18 0.00 0.00 4.85
3872 6800 1.512926 CTTCTTGTTGTACTGCGCCT 58.487 50.000 4.18 0.00 0.00 5.52
3873 6801 0.110192 GCTTCTTGTTGTACTGCGCC 60.110 55.000 4.18 0.00 0.00 6.53
3874 6802 0.110192 GGCTTCTTGTTGTACTGCGC 60.110 55.000 0.00 0.00 0.00 6.09
3875 6803 1.195448 CAGGCTTCTTGTTGTACTGCG 59.805 52.381 0.00 0.00 0.00 5.18
3876 6804 2.031682 CACAGGCTTCTTGTTGTACTGC 60.032 50.000 0.00 0.00 0.00 4.40
3877 6805 2.031682 GCACAGGCTTCTTGTTGTACTG 60.032 50.000 0.00 0.00 36.96 2.74
3878 6806 2.222027 GCACAGGCTTCTTGTTGTACT 58.778 47.619 0.00 0.00 36.96 2.73
3879 6807 1.266989 GGCACAGGCTTCTTGTTGTAC 59.733 52.381 0.00 0.00 40.87 2.90
3880 6808 1.133945 TGGCACAGGCTTCTTGTTGTA 60.134 47.619 0.00 0.00 40.87 2.41
3881 6809 0.395586 TGGCACAGGCTTCTTGTTGT 60.396 50.000 0.00 0.00 40.87 3.32
3882 6810 0.746063 TTGGCACAGGCTTCTTGTTG 59.254 50.000 0.00 0.00 42.39 3.33
3883 6811 1.035139 CTTGGCACAGGCTTCTTGTT 58.965 50.000 0.00 0.00 42.39 2.83
3884 6812 0.106519 ACTTGGCACAGGCTTCTTGT 60.107 50.000 0.00 0.00 39.91 3.16
3885 6813 0.595095 GACTTGGCACAGGCTTCTTG 59.405 55.000 0.00 0.00 39.91 3.02
3886 6814 0.475906 AGACTTGGCACAGGCTTCTT 59.524 50.000 0.00 0.00 39.91 2.52
3887 6815 0.250640 CAGACTTGGCACAGGCTTCT 60.251 55.000 2.78 0.00 39.91 2.85
3888 6816 0.536006 ACAGACTTGGCACAGGCTTC 60.536 55.000 2.78 0.00 39.91 3.86
3889 6817 0.106519 AACAGACTTGGCACAGGCTT 60.107 50.000 2.78 0.00 39.91 4.35
3890 6818 0.536006 GAACAGACTTGGCACAGGCT 60.536 55.000 0.00 0.00 39.91 4.58
3891 6819 1.845809 CGAACAGACTTGGCACAGGC 61.846 60.000 0.00 0.00 39.91 4.85
3892 6820 0.249868 TCGAACAGACTTGGCACAGG 60.250 55.000 0.00 0.00 42.39 4.00
3893 6821 0.861837 GTCGAACAGACTTGGCACAG 59.138 55.000 0.00 0.00 46.13 3.66
3894 6822 2.986311 GTCGAACAGACTTGGCACA 58.014 52.632 0.00 0.00 46.13 4.57
3903 6831 1.847328 TGCCATAGAGGTCGAACAGA 58.153 50.000 1.87 0.00 40.61 3.41
3904 6832 2.898729 ATGCCATAGAGGTCGAACAG 57.101 50.000 1.87 0.00 40.61 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.