Multiple sequence alignment - TraesCS5B01G523500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G523500 chr5B 100.000 2504 0 0 1 2504 684498903 684501406 0.000000e+00 4625.0
1 TraesCS5B01G523500 chr5B 91.779 596 30 6 1910 2504 684545188 684545765 0.000000e+00 811.0
2 TraesCS5B01G523500 chr4B 94.665 1462 69 5 1 1462 75638945 75640397 0.000000e+00 2259.0
3 TraesCS5B01G523500 chr2B 94.094 1473 70 9 1 1462 98449186 98447720 0.000000e+00 2222.0
4 TraesCS5B01G523500 chr7B 93.993 1365 53 9 112 1462 714383205 714384554 0.000000e+00 2039.0
5 TraesCS5B01G523500 chr7B 88.609 1308 110 18 176 1457 599843209 599841915 0.000000e+00 1554.0
6 TraesCS5B01G523500 chr7B 85.180 1309 124 24 169 1457 125944288 125943030 0.000000e+00 1279.0
7 TraesCS5B01G523500 chr1B 91.951 1466 86 17 1 1462 502077037 502075600 0.000000e+00 2025.0
8 TraesCS5B01G523500 chr3B 91.610 1466 107 14 3 1462 699175564 699174109 0.000000e+00 2012.0
9 TraesCS5B01G523500 chr3B 94.685 715 35 3 609 1323 16320969 16320258 0.000000e+00 1107.0
10 TraesCS5B01G523500 chr3B 92.248 516 36 4 99 613 16322913 16322401 0.000000e+00 728.0
11 TraesCS5B01G523500 chr3B 95.960 99 4 0 1364 1462 16320198 16320100 7.170000e-36 161.0
12 TraesCS5B01G523500 chr3B 94.000 50 3 0 49 98 699175704 699175655 2.670000e-10 76.8
13 TraesCS5B01G523500 chr3B 88.710 62 1 1 1359 1414 16320258 16320197 1.240000e-08 71.3
14 TraesCS5B01G523500 chr6B 93.353 1369 73 10 104 1462 470911386 470910026 0.000000e+00 2008.0
15 TraesCS5B01G523500 chr7D 92.041 1382 83 16 99 1462 560757706 560759078 0.000000e+00 1917.0
16 TraesCS5B01G523500 chr6D 91.087 1380 96 13 99 1462 356196854 356198222 0.000000e+00 1842.0
17 TraesCS5B01G523500 chr7A 89.580 1382 112 16 99 1457 635160794 635162166 0.000000e+00 1725.0
18 TraesCS5B01G523500 chr5D 83.776 1017 134 20 1507 2504 543061435 543062439 0.000000e+00 935.0
19 TraesCS5B01G523500 chr4A 81.023 1017 138 32 1524 2504 626116076 626115079 0.000000e+00 758.0
20 TraesCS5B01G523500 chr3D 74.335 526 116 13 1790 2310 563644170 563643659 3.260000e-49 206.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G523500 chr5B 684498903 684501406 2503 False 4625.000 4625 100.00000 1 2504 1 chr5B.!!$F1 2503
1 TraesCS5B01G523500 chr5B 684545188 684545765 577 False 811.000 811 91.77900 1910 2504 1 chr5B.!!$F2 594
2 TraesCS5B01G523500 chr4B 75638945 75640397 1452 False 2259.000 2259 94.66500 1 1462 1 chr4B.!!$F1 1461
3 TraesCS5B01G523500 chr2B 98447720 98449186 1466 True 2222.000 2222 94.09400 1 1462 1 chr2B.!!$R1 1461
4 TraesCS5B01G523500 chr7B 714383205 714384554 1349 False 2039.000 2039 93.99300 112 1462 1 chr7B.!!$F1 1350
5 TraesCS5B01G523500 chr7B 599841915 599843209 1294 True 1554.000 1554 88.60900 176 1457 1 chr7B.!!$R2 1281
6 TraesCS5B01G523500 chr7B 125943030 125944288 1258 True 1279.000 1279 85.18000 169 1457 1 chr7B.!!$R1 1288
7 TraesCS5B01G523500 chr1B 502075600 502077037 1437 True 2025.000 2025 91.95100 1 1462 1 chr1B.!!$R1 1461
8 TraesCS5B01G523500 chr3B 699174109 699175704 1595 True 1044.400 2012 92.80500 3 1462 2 chr3B.!!$R2 1459
9 TraesCS5B01G523500 chr3B 16320100 16322913 2813 True 516.825 1107 92.90075 99 1462 4 chr3B.!!$R1 1363
10 TraesCS5B01G523500 chr6B 470910026 470911386 1360 True 2008.000 2008 93.35300 104 1462 1 chr6B.!!$R1 1358
11 TraesCS5B01G523500 chr7D 560757706 560759078 1372 False 1917.000 1917 92.04100 99 1462 1 chr7D.!!$F1 1363
12 TraesCS5B01G523500 chr6D 356196854 356198222 1368 False 1842.000 1842 91.08700 99 1462 1 chr6D.!!$F1 1363
13 TraesCS5B01G523500 chr7A 635160794 635162166 1372 False 1725.000 1725 89.58000 99 1457 1 chr7A.!!$F1 1358
14 TraesCS5B01G523500 chr5D 543061435 543062439 1004 False 935.000 935 83.77600 1507 2504 1 chr5D.!!$F1 997
15 TraesCS5B01G523500 chr4A 626115079 626116076 997 True 758.000 758 81.02300 1524 2504 1 chr4A.!!$R1 980
16 TraesCS5B01G523500 chr3D 563643659 563644170 511 True 206.000 206 74.33500 1790 2310 1 chr3D.!!$R1 520

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
765 2381 2.280628 GGAGGAACTGAGGTATTTGCG 58.719 52.381 0.0 0.0 41.55 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2270 3956 0.395312 AGTCCAAGGTACCGTGTTGG 59.605 55.0 23.77 22.04 41.92 3.77 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 166 3.121544 GCAGCCACTATACGTTCTTACC 58.878 50.000 0.00 0.00 0.00 2.85
54 193 2.995939 TGTGTAATCTCAAGCTTGCTCG 59.004 45.455 21.99 12.06 0.00 5.03
57 196 3.193479 TGTAATCTCAAGCTTGCTCGAGA 59.807 43.478 21.99 18.34 38.78 4.04
65 204 5.423015 TCAAGCTTGCTCGAGATTTCTTAT 58.577 37.500 21.99 0.00 0.00 1.73
72 211 7.699812 GCTTGCTCGAGATTTCTTATTCATTTT 59.300 33.333 18.75 0.00 0.00 1.82
215 359 7.942341 AGTGAAAATCAGATAGTTTACAACCCA 59.058 33.333 5.12 0.00 0.00 4.51
260 412 9.026074 TGTAAATTGTTGTTTGCTTAGTTTAGC 57.974 29.630 0.00 0.00 41.59 3.09
323 482 8.764287 CACTTTTTCCAGAACCATTTTTATGTC 58.236 33.333 0.00 0.00 0.00 3.06
673 2288 4.888239 AGAATAGTAACGAGAGCCAAGCTA 59.112 41.667 0.00 0.00 39.88 3.32
708 2323 6.350445 GGAATACAAATGTCAAAGGTGCAGAT 60.350 38.462 0.00 0.00 0.00 2.90
765 2381 2.280628 GGAGGAACTGAGGTATTTGCG 58.719 52.381 0.00 0.00 41.55 4.85
975 2622 6.208402 TCATCATTCGAAAAGAATTTGGTGGA 59.792 34.615 0.00 0.00 46.80 4.02
1106 2753 0.391130 GTAGATGCCGCAAGTGTCCA 60.391 55.000 0.00 0.00 0.00 4.02
1463 3129 1.305201 GGCAACAAGAAGGTCGTTCA 58.695 50.000 7.94 0.00 37.67 3.18
1464 3130 1.002792 GGCAACAAGAAGGTCGTTCAC 60.003 52.381 7.94 0.00 37.67 3.18
1465 3131 1.332904 GCAACAAGAAGGTCGTTCACG 60.333 52.381 7.94 0.00 37.67 4.35
1478 3144 4.418013 TCGTTCACGAAATAGGTTACGA 57.582 40.909 0.00 0.00 46.30 3.43
1479 3145 4.793071 TCGTTCACGAAATAGGTTACGAA 58.207 39.130 0.00 0.00 46.30 3.85
1480 3146 4.853196 TCGTTCACGAAATAGGTTACGAAG 59.147 41.667 0.00 0.00 46.30 3.79
1481 3147 4.853196 CGTTCACGAAATAGGTTACGAAGA 59.147 41.667 0.00 0.00 43.02 2.87
1482 3148 5.514204 CGTTCACGAAATAGGTTACGAAGAT 59.486 40.000 0.00 0.00 43.02 2.40
1483 3149 6.505888 CGTTCACGAAATAGGTTACGAAGATG 60.506 42.308 0.00 0.00 43.02 2.90
1484 3150 6.198650 TCACGAAATAGGTTACGAAGATGA 57.801 37.500 0.00 0.00 0.00 2.92
1485 3151 6.802608 TCACGAAATAGGTTACGAAGATGAT 58.197 36.000 0.00 0.00 0.00 2.45
1486 3152 6.695713 TCACGAAATAGGTTACGAAGATGATG 59.304 38.462 0.00 0.00 0.00 3.07
1487 3153 6.695713 CACGAAATAGGTTACGAAGATGATGA 59.304 38.462 0.00 0.00 0.00 2.92
1488 3154 6.696148 ACGAAATAGGTTACGAAGATGATGAC 59.304 38.462 0.00 0.00 0.00 3.06
1489 3155 6.144080 CGAAATAGGTTACGAAGATGATGACC 59.856 42.308 0.00 0.00 0.00 4.02
1490 3156 6.732896 AATAGGTTACGAAGATGATGACCT 57.267 37.500 0.00 0.00 39.26 3.85
1491 3157 4.657436 AGGTTACGAAGATGATGACCTC 57.343 45.455 0.00 0.00 30.59 3.85
1492 3158 4.282496 AGGTTACGAAGATGATGACCTCT 58.718 43.478 0.00 0.00 30.59 3.69
1493 3159 5.446860 AGGTTACGAAGATGATGACCTCTA 58.553 41.667 0.00 0.00 30.59 2.43
1494 3160 6.071984 AGGTTACGAAGATGATGACCTCTAT 58.928 40.000 0.00 0.00 30.59 1.98
1495 3161 6.551601 AGGTTACGAAGATGATGACCTCTATT 59.448 38.462 0.00 0.00 30.59 1.73
1496 3162 6.864165 GGTTACGAAGATGATGACCTCTATTC 59.136 42.308 0.00 0.00 0.00 1.75
1497 3163 7.255660 GGTTACGAAGATGATGACCTCTATTCT 60.256 40.741 0.00 0.00 0.00 2.40
1498 3164 8.784994 GTTACGAAGATGATGACCTCTATTCTA 58.215 37.037 0.00 0.00 0.00 2.10
1499 3165 9.521841 TTACGAAGATGATGACCTCTATTCTAT 57.478 33.333 0.00 0.00 0.00 1.98
1500 3166 7.825681 ACGAAGATGATGACCTCTATTCTATG 58.174 38.462 0.00 0.00 0.00 2.23
1501 3167 7.450014 ACGAAGATGATGACCTCTATTCTATGT 59.550 37.037 0.00 0.00 0.00 2.29
1502 3168 8.951243 CGAAGATGATGACCTCTATTCTATGTA 58.049 37.037 0.00 0.00 0.00 2.29
1529 3195 8.738645 AAAATGTAGATGGAGATAAACCTCAC 57.261 34.615 0.00 0.00 34.94 3.51
1530 3196 7.437713 AATGTAGATGGAGATAAACCTCACA 57.562 36.000 0.00 0.00 34.94 3.58
1574 3240 9.730705 AGATGATGTATATGAACATAAACCTGG 57.269 33.333 0.00 0.00 40.17 4.45
1580 3246 9.521841 TGTATATGAACATAAACCTGGTCAAAA 57.478 29.630 0.00 0.00 45.45 2.44
1646 3312 3.953612 AGGTTGAAAGCAAAGTGTGATGA 59.046 39.130 0.00 0.00 35.42 2.92
1661 3327 3.189910 TGTGATGAAGATTGCACTTGCTC 59.810 43.478 2.33 0.00 42.66 4.26
1666 3332 0.886563 AGATTGCACTTGCTCCTTGC 59.113 50.000 2.33 0.00 42.66 4.01
1668 3334 0.890542 ATTGCACTTGCTCCTTGCGA 60.891 50.000 2.33 0.00 46.63 5.10
1695 3361 7.759489 ATTCTTCAACAATAGTACAAAGGCA 57.241 32.000 0.00 0.00 0.00 4.75
1708 3375 6.815089 AGTACAAAGGCATTCACAATCAAAA 58.185 32.000 0.00 0.00 0.00 2.44
1717 3384 5.062558 GCATTCACAATCAAAAGGTATGTGC 59.937 40.000 0.00 0.00 40.80 4.57
1753 3421 5.705441 TGTAGCAACAAGTGGAAGATTAAGG 59.295 40.000 0.00 0.00 30.91 2.69
1754 3424 4.082125 AGCAACAAGTGGAAGATTAAGGG 58.918 43.478 0.00 0.00 0.00 3.95
1779 3450 4.148079 TCACAAATCCTTACCATGCACAA 58.852 39.130 0.00 0.00 0.00 3.33
1781 3452 5.069648 TCACAAATCCTTACCATGCACAAAA 59.930 36.000 0.00 0.00 0.00 2.44
1804 3479 3.456380 AATTGGAGAGCTTTAGGGCAA 57.544 42.857 0.00 0.00 34.17 4.52
1810 3485 0.528017 GAGCTTTAGGGCAAACCAGC 59.472 55.000 0.00 0.00 43.89 4.85
1871 3549 0.184692 TGGCACATGACACCTGGAAA 59.815 50.000 0.00 0.00 0.00 3.13
1891 3569 7.353525 TGGAAAGATGAAATTATAGAGGGCAA 58.646 34.615 0.00 0.00 0.00 4.52
1900 3582 1.589414 ATAGAGGGCAAGAAGGCTGT 58.411 50.000 0.00 0.00 43.56 4.40
1936 3618 2.992124 TGGTGACGAAGAAGGACAAA 57.008 45.000 0.00 0.00 0.00 2.83
1937 3619 2.557317 TGGTGACGAAGAAGGACAAAC 58.443 47.619 0.00 0.00 0.00 2.93
1976 3659 5.615925 TTAGGCAAAGAGATAAGGAGGAC 57.384 43.478 0.00 0.00 0.00 3.85
1982 3666 5.804771 GCAAAGAGATAAGGAGGACCAACTT 60.805 44.000 6.05 6.05 38.94 2.66
2004 3689 8.172352 ACTTTAGATCAGCTTCTATGTATCGT 57.828 34.615 0.00 0.00 0.00 3.73
2005 3690 9.286170 ACTTTAGATCAGCTTCTATGTATCGTA 57.714 33.333 0.00 0.00 0.00 3.43
2006 3691 9.549509 CTTTAGATCAGCTTCTATGTATCGTAC 57.450 37.037 0.00 0.00 0.00 3.67
2007 3692 6.503589 AGATCAGCTTCTATGTATCGTACC 57.496 41.667 0.00 0.00 0.00 3.34
2008 3693 6.004574 AGATCAGCTTCTATGTATCGTACCA 58.995 40.000 0.00 0.00 0.00 3.25
2061 3747 0.530744 ATGTGCCTTCATGCTTGCAG 59.469 50.000 0.87 0.00 33.80 4.41
2145 3831 7.675062 ACTAGATATAGAGGACAATTGCTTGG 58.325 38.462 5.05 0.00 36.64 3.61
2192 3878 5.470437 GGGTGCATCTTTACTATAGCCTTTC 59.530 44.000 0.00 0.00 0.00 2.62
2270 3956 1.607628 GAGATCTTGGCATGGCATCAC 59.392 52.381 23.96 12.44 0.00 3.06
2310 3996 8.564574 TGGACTATAATGTCAGACAAACAAAAC 58.435 33.333 7.50 0.00 38.61 2.43
2311 3997 8.564574 GGACTATAATGTCAGACAAACAAAACA 58.435 33.333 7.50 0.00 38.61 2.83
2342 4030 7.125391 TCCTATTTTTAACCATGATCTTGCCT 58.875 34.615 3.07 0.00 0.00 4.75
2433 4133 5.871396 AGTTAGTGAAGTGTTTCCTGAGA 57.129 39.130 0.00 0.00 32.09 3.27
2466 4172 4.283212 TGTTCTGTGTCAGACATATGTGGA 59.717 41.667 14.43 7.89 40.46 4.02
2474 4180 7.068103 TGTGTCAGACATATGTGGAAAAACTTT 59.932 33.333 14.43 0.00 0.00 2.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 157 2.961522 ACACAAATGCGGTAAGAACG 57.038 45.000 0.00 0.00 0.00 3.95
27 166 4.346734 AGCTTGAGATTACACAAATGCG 57.653 40.909 0.00 0.00 0.00 4.73
72 211 3.090210 ACACATGATGGCATTTCAGGA 57.910 42.857 9.48 0.00 30.68 3.86
528 704 9.699410 TGGAAGATAGAAACCACATAAATCAAT 57.301 29.630 0.00 0.00 0.00 2.57
673 2288 4.603131 ACATTTGTATTCCCAGCATCTGT 58.397 39.130 0.00 0.00 0.00 3.41
708 2323 2.104170 GGTTTTGGAGGTTGGTCAACA 58.896 47.619 14.69 0.00 42.85 3.33
975 2622 1.891150 CTTGCTGCAAGGTCCAGAATT 59.109 47.619 29.91 0.00 37.77 2.17
1106 2753 4.551215 TTTGGCAAACCCCATATCCTAT 57.449 40.909 8.93 0.00 34.21 2.57
1136 2783 2.476619 CGATTGTCGAAGCACACTTTCT 59.523 45.455 0.00 0.00 43.74 2.52
1462 3128 6.695713 TCATCATCTTCGTAACCTATTTCGTG 59.304 38.462 0.00 0.00 31.23 4.35
1463 3129 6.696148 GTCATCATCTTCGTAACCTATTTCGT 59.304 38.462 0.00 0.00 31.23 3.85
1464 3130 6.144080 GGTCATCATCTTCGTAACCTATTTCG 59.856 42.308 0.00 0.00 0.00 3.46
1465 3131 7.210873 AGGTCATCATCTTCGTAACCTATTTC 58.789 38.462 0.00 0.00 34.00 2.17
1466 3132 7.070074 AGAGGTCATCATCTTCGTAACCTATTT 59.930 37.037 0.00 0.00 35.84 1.40
1467 3133 6.551601 AGAGGTCATCATCTTCGTAACCTATT 59.448 38.462 0.00 0.00 35.84 1.73
1468 3134 6.071984 AGAGGTCATCATCTTCGTAACCTAT 58.928 40.000 0.00 0.00 35.84 2.57
1469 3135 5.446860 AGAGGTCATCATCTTCGTAACCTA 58.553 41.667 0.00 0.00 35.84 3.08
1470 3136 4.282496 AGAGGTCATCATCTTCGTAACCT 58.718 43.478 0.00 0.00 38.33 3.50
1471 3137 4.657436 AGAGGTCATCATCTTCGTAACC 57.343 45.455 0.00 0.00 30.03 2.85
1472 3138 7.653647 AGAATAGAGGTCATCATCTTCGTAAC 58.346 38.462 0.00 0.00 36.15 2.50
1473 3139 7.825331 AGAATAGAGGTCATCATCTTCGTAA 57.175 36.000 0.00 0.00 36.15 3.18
1474 3140 8.951243 CATAGAATAGAGGTCATCATCTTCGTA 58.049 37.037 0.00 0.00 36.15 3.43
1475 3141 7.450014 ACATAGAATAGAGGTCATCATCTTCGT 59.550 37.037 0.00 0.00 36.15 3.85
1476 3142 7.825681 ACATAGAATAGAGGTCATCATCTTCG 58.174 38.462 0.00 0.00 36.15 3.79
1499 3165 9.832445 GGTTTATCTCCATCTACATTTTCTACA 57.168 33.333 0.00 0.00 0.00 2.74
1502 3168 8.772250 TGAGGTTTATCTCCATCTACATTTTCT 58.228 33.333 0.00 0.00 33.04 2.52
1503 3169 8.831550 GTGAGGTTTATCTCCATCTACATTTTC 58.168 37.037 0.00 0.00 33.04 2.29
1504 3170 8.328758 TGTGAGGTTTATCTCCATCTACATTTT 58.671 33.333 0.00 0.00 33.04 1.82
1505 3171 7.861629 TGTGAGGTTTATCTCCATCTACATTT 58.138 34.615 0.00 0.00 33.04 2.32
1553 3219 9.693739 TTTGACCAGGTTTATGTTCATATACAT 57.306 29.630 12.66 5.62 41.43 2.29
1585 3251 7.107639 TCATGTACATTATCGTCTTCCAAGA 57.892 36.000 5.37 0.00 0.00 3.02
1619 3285 5.827797 TCACACTTTGCTTTCAACCTTATCT 59.172 36.000 0.00 0.00 30.75 1.98
1626 3292 5.581605 TCTTCATCACACTTTGCTTTCAAC 58.418 37.500 0.00 0.00 30.75 3.18
1646 3312 1.271656 GCAAGGAGCAAGTGCAATCTT 59.728 47.619 6.00 3.41 45.16 2.40
1670 3336 8.177119 TGCCTTTGTACTATTGTTGAAGAATT 57.823 30.769 0.00 0.00 0.00 2.17
1671 3337 7.759489 TGCCTTTGTACTATTGTTGAAGAAT 57.241 32.000 0.00 0.00 0.00 2.40
1695 3361 6.343716 TGCACATACCTTTTGATTGTGAAT 57.656 33.333 5.60 0.00 39.98 2.57
1717 3384 1.068333 GTTGCTACAAGTGTGCCCATG 60.068 52.381 0.00 0.00 0.00 3.66
1754 3424 5.105797 TGTGCATGGTAAGGATTTGTGAATC 60.106 40.000 0.00 0.00 40.78 2.52
1781 3452 4.159557 TGCCCTAAAGCTCTCCAATTTTT 58.840 39.130 0.00 0.00 0.00 1.94
1783 3454 3.456380 TGCCCTAAAGCTCTCCAATTT 57.544 42.857 0.00 0.00 0.00 1.82
1785 3456 3.092301 GTTTGCCCTAAAGCTCTCCAAT 58.908 45.455 0.00 0.00 0.00 3.16
1804 3479 0.700564 ATGAGGTCCATGTGCTGGTT 59.299 50.000 0.00 0.00 46.08 3.67
1810 3485 6.789220 CTTGAAAAGTTCATGAGGTCCATGTG 60.789 42.308 0.00 0.00 44.83 3.21
1816 3491 6.015940 ACAATCCTTGAAAAGTTCATGAGGTC 60.016 38.462 0.00 0.00 44.25 3.85
1871 3549 7.230027 CCTTCTTGCCCTCTATAATTTCATCT 58.770 38.462 0.00 0.00 0.00 2.90
1891 3569 5.595952 GGATTATTTTCATGGACAGCCTTCT 59.404 40.000 0.00 0.00 34.31 2.85
1923 3605 2.680841 TGGTTGTGTTTGTCCTTCTTCG 59.319 45.455 0.00 0.00 0.00 3.79
1936 3618 4.526970 CCTAATTCCATAGCTGGTTGTGT 58.473 43.478 0.00 0.00 43.61 3.72
1937 3619 3.316308 GCCTAATTCCATAGCTGGTTGTG 59.684 47.826 0.00 0.00 43.61 3.33
1957 3639 2.505819 TGGTCCTCCTTATCTCTTTGCC 59.494 50.000 0.00 0.00 34.23 4.52
1962 3645 6.503944 TCTAAAGTTGGTCCTCCTTATCTCT 58.496 40.000 0.00 0.00 34.23 3.10
1976 3659 9.202273 GATACATAGAAGCTGATCTAAAGTTGG 57.798 37.037 0.00 0.00 35.64 3.77
1982 3666 7.664318 TGGTACGATACATAGAAGCTGATCTAA 59.336 37.037 0.00 0.00 35.64 2.10
2007 3692 0.731514 CTTTGCTGCGCCATCAAGTG 60.732 55.000 4.18 0.18 0.00 3.16
2008 3693 1.174712 ACTTTGCTGCGCCATCAAGT 61.175 50.000 4.18 5.59 0.00 3.16
2061 3747 1.280457 TCCCTGAAGAAAGCCTCTCC 58.720 55.000 0.00 0.00 31.02 3.71
2145 3831 5.049405 CCATTTGAGTCAACACCTACAACTC 60.049 44.000 4.68 0.00 37.47 3.01
2192 3878 1.197721 GTCCTCCGCTTGAACAACATG 59.802 52.381 0.00 0.00 0.00 3.21
2270 3956 0.395312 AGTCCAAGGTACCGTGTTGG 59.605 55.000 23.77 22.04 41.92 3.77
2396 4096 7.974501 ACTTCACTAACTACATTAATGAGACCG 59.025 37.037 22.16 7.88 31.01 4.79
2466 4172 6.403092 CCTTTGAAATGCCGTTGAAAGTTTTT 60.403 34.615 7.35 0.00 0.00 1.94
2474 4180 2.857483 TCTCCTTTGAAATGCCGTTGA 58.143 42.857 0.00 0.00 0.00 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.