Multiple sequence alignment - TraesCS5B01G523400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G523400 chr5B 100.000 3918 0 0 984 4901 684497208 684493291 0.000000e+00 7236.0
1 TraesCS5B01G523400 chr5B 100.000 711 0 0 1 711 684498191 684497481 0.000000e+00 1314.0
2 TraesCS5B01G523400 chr4A 93.383 1995 87 11 2932 4901 626118104 626120078 0.000000e+00 2911.0
3 TraesCS5B01G523400 chr4A 91.412 1176 66 17 998 2155 626116345 626117503 0.000000e+00 1580.0
4 TraesCS5B01G523400 chr4A 87.196 617 60 11 2188 2803 626117501 626118099 0.000000e+00 684.0
5 TraesCS5B01G523400 chr4A 89.412 170 16 2 1 169 617725132 617724964 3.840000e-51 213.0
6 TraesCS5B01G523400 chr4A 88.824 170 17 2 1 169 617758334 617758166 1.790000e-49 207.0
7 TraesCS5B01G523400 chr4A 88.824 170 17 2 1 169 617790610 617790442 1.790000e-49 207.0
8 TraesCS5B01G523400 chr4A 96.104 77 1 1 613 689 626116176 626116250 1.850000e-24 124.0
9 TraesCS5B01G523400 chr5D 92.591 2065 83 25 2886 4901 543058714 543056671 0.000000e+00 2902.0
10 TraesCS5B01G523400 chr5D 91.849 1877 108 19 1010 2861 543060567 543058711 0.000000e+00 2577.0
11 TraesCS5B01G523400 chr6B 84.266 572 67 10 1162 1724 559066405 559065848 2.010000e-148 536.0
12 TraesCS5B01G523400 chr6B 89.820 167 15 2 1 166 470912532 470912697 3.840000e-51 213.0
13 TraesCS5B01G523400 chrUn 84.266 572 62 13 1159 1721 73933202 73933754 2.600000e-147 532.0
14 TraesCS5B01G523400 chrUn 89.412 170 16 2 1 169 325321508 325321340 3.840000e-51 213.0
15 TraesCS5B01G523400 chrUn 88.824 170 17 2 1 169 235772231 235772063 1.790000e-49 207.0
16 TraesCS5B01G523400 chr7D 84.116 277 17 8 4641 4901 529383291 529383026 4.900000e-60 243.0
17 TraesCS5B01G523400 chr7D 84.116 277 17 8 4641 4901 529384224 529384489 4.900000e-60 243.0
18 TraesCS5B01G523400 chr3D 89.412 170 16 2 1 169 305605063 305604895 3.840000e-51 213.0
19 TraesCS5B01G523400 chr3B 90.244 164 14 2 3 165 581095328 581095490 3.840000e-51 213.0
20 TraesCS5B01G523400 chr3B 89.157 166 17 1 1 166 60583841 60584005 6.430000e-49 206.0
21 TraesCS5B01G523400 chr2B 92.857 42 1 1 2440 2481 349513686 349513647 5.300000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G523400 chr5B 684493291 684498191 4900 True 4275.00 7236 100.00000 1 4901 2 chr5B.!!$R1 4900
1 TraesCS5B01G523400 chr4A 626116176 626120078 3902 False 1324.75 2911 92.02375 613 4901 4 chr4A.!!$F1 4288
2 TraesCS5B01G523400 chr5D 543056671 543060567 3896 True 2739.50 2902 92.22000 1010 4901 2 chr5D.!!$R1 3891
3 TraesCS5B01G523400 chr6B 559065848 559066405 557 True 536.00 536 84.26600 1162 1724 1 chr6B.!!$R1 562
4 TraesCS5B01G523400 chrUn 73933202 73933754 552 False 532.00 532 84.26600 1159 1721 1 chrUn.!!$F1 562

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
547 548 0.037882 CCATCATCATCCCGTCCGAG 60.038 60.000 0.00 0.00 0.00 4.63 F
1961 1999 0.035176 TACCCTGTTGTAACGGTGGC 59.965 55.000 3.17 0.00 33.38 5.01 F
2807 2901 1.135315 GGCATGCAGTTGTACAGCG 59.865 57.895 21.36 1.09 32.90 5.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2246 2339 0.814457 TGGATACATTGTTTGGCGGC 59.186 50.0 0.00 0.0 46.17 6.53 R
3702 3796 0.106268 TGGAGCACCTTTGAAGCCAA 60.106 50.0 0.71 0.0 37.04 4.52 R
3903 3997 0.543410 TCCAAGGGCTCTACCGACAA 60.543 55.0 0.00 0.0 40.62 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
42 43 6.428385 AAAATGGAATCGAGATGAACTGAC 57.572 37.500 0.00 0.00 0.00 3.51
43 44 3.526931 TGGAATCGAGATGAACTGACC 57.473 47.619 0.00 0.00 0.00 4.02
44 45 3.099905 TGGAATCGAGATGAACTGACCT 58.900 45.455 0.00 0.00 0.00 3.85
45 46 3.118992 TGGAATCGAGATGAACTGACCTG 60.119 47.826 0.00 0.00 0.00 4.00
46 47 3.118956 GGAATCGAGATGAACTGACCTGT 60.119 47.826 0.00 0.00 0.00 4.00
47 48 3.516981 ATCGAGATGAACTGACCTGTG 57.483 47.619 0.00 0.00 0.00 3.66
48 49 2.514803 TCGAGATGAACTGACCTGTGA 58.485 47.619 0.00 0.00 0.00 3.58
49 50 3.092301 TCGAGATGAACTGACCTGTGAT 58.908 45.455 0.00 0.00 0.00 3.06
50 51 3.511540 TCGAGATGAACTGACCTGTGATT 59.488 43.478 0.00 0.00 0.00 2.57
51 52 3.862267 CGAGATGAACTGACCTGTGATTC 59.138 47.826 0.00 0.00 0.00 2.52
52 53 4.381398 CGAGATGAACTGACCTGTGATTCT 60.381 45.833 0.00 0.00 0.00 2.40
53 54 4.829968 AGATGAACTGACCTGTGATTCTG 58.170 43.478 0.00 0.00 0.00 3.02
54 55 2.771089 TGAACTGACCTGTGATTCTGC 58.229 47.619 0.00 0.00 0.00 4.26
55 56 2.079925 GAACTGACCTGTGATTCTGCC 58.920 52.381 0.00 0.00 0.00 4.85
56 57 0.326264 ACTGACCTGTGATTCTGCCC 59.674 55.000 0.00 0.00 0.00 5.36
57 58 0.617413 CTGACCTGTGATTCTGCCCT 59.383 55.000 0.00 0.00 0.00 5.19
58 59 0.615331 TGACCTGTGATTCTGCCCTC 59.385 55.000 0.00 0.00 0.00 4.30
59 60 0.107459 GACCTGTGATTCTGCCCTCC 60.107 60.000 0.00 0.00 0.00 4.30
60 61 1.153289 CCTGTGATTCTGCCCTCCG 60.153 63.158 0.00 0.00 0.00 4.63
61 62 1.817099 CTGTGATTCTGCCCTCCGC 60.817 63.158 0.00 0.00 38.31 5.54
62 63 2.514824 GTGATTCTGCCCTCCGCC 60.515 66.667 0.00 0.00 36.24 6.13
63 64 3.008517 TGATTCTGCCCTCCGCCA 61.009 61.111 0.00 0.00 36.24 5.69
64 65 2.272146 GATTCTGCCCTCCGCCAA 59.728 61.111 0.00 0.00 36.24 4.52
65 66 1.378514 GATTCTGCCCTCCGCCAAA 60.379 57.895 0.00 0.00 36.24 3.28
66 67 1.657751 GATTCTGCCCTCCGCCAAAC 61.658 60.000 0.00 0.00 36.24 2.93
67 68 2.424842 ATTCTGCCCTCCGCCAAACA 62.425 55.000 0.00 0.00 36.24 2.83
68 69 3.058160 CTGCCCTCCGCCAAACAG 61.058 66.667 0.00 0.00 36.24 3.16
69 70 4.659172 TGCCCTCCGCCAAACAGG 62.659 66.667 0.00 0.00 41.84 4.00
70 71 4.344865 GCCCTCCGCCAAACAGGA 62.345 66.667 0.00 0.00 41.22 3.86
71 72 2.434331 CCCTCCGCCAAACAGGAA 59.566 61.111 0.00 0.00 41.22 3.36
72 73 1.675641 CCCTCCGCCAAACAGGAAG 60.676 63.158 0.00 0.00 41.22 3.46
73 74 1.675641 CCTCCGCCAAACAGGAAGG 60.676 63.158 0.00 0.00 41.22 3.46
74 75 2.282180 TCCGCCAAACAGGAAGGC 60.282 61.111 0.00 0.00 44.89 4.35
77 78 4.002797 GCCAAACAGGAAGGCGAT 57.997 55.556 0.00 0.00 41.22 4.58
78 79 2.267045 GCCAAACAGGAAGGCGATT 58.733 52.632 0.00 0.00 41.22 3.34
79 80 0.171231 GCCAAACAGGAAGGCGATTC 59.829 55.000 0.00 0.00 41.22 2.52
80 81 1.826385 CCAAACAGGAAGGCGATTCT 58.174 50.000 0.00 0.00 41.22 2.40
81 82 1.470098 CCAAACAGGAAGGCGATTCTG 59.530 52.381 0.69 0.69 41.22 3.02
82 83 1.135575 CAAACAGGAAGGCGATTCTGC 60.136 52.381 2.01 0.00 38.07 4.26
83 84 0.326264 AACAGGAAGGCGATTCTGCT 59.674 50.000 2.01 0.00 38.07 4.24
84 85 0.107945 ACAGGAAGGCGATTCTGCTC 60.108 55.000 2.01 0.00 38.07 4.26
85 86 0.813210 CAGGAAGGCGATTCTGCTCC 60.813 60.000 0.00 2.20 38.07 4.70
86 87 0.980231 AGGAAGGCGATTCTGCTCCT 60.980 55.000 0.00 5.87 38.07 3.69
87 88 0.531753 GGAAGGCGATTCTGCTCCTC 60.532 60.000 0.00 0.00 38.07 3.71
88 89 0.531753 GAAGGCGATTCTGCTCCTCC 60.532 60.000 0.00 0.00 34.86 4.30
89 90 2.279784 GGCGATTCTGCTCCTCCG 60.280 66.667 0.00 0.00 34.52 4.63
90 91 2.964389 GCGATTCTGCTCCTCCGC 60.964 66.667 0.00 0.00 35.91 5.54
91 92 2.656651 CGATTCTGCTCCTCCGCG 60.657 66.667 0.00 0.00 0.00 6.46
92 93 2.964389 GATTCTGCTCCTCCGCGC 60.964 66.667 0.00 0.00 0.00 6.86
93 94 4.880537 ATTCTGCTCCTCCGCGCG 62.881 66.667 25.67 25.67 0.00 6.86
108 109 4.072088 GCGAACCACACGGCGAAG 62.072 66.667 16.62 8.41 34.57 3.79
109 110 2.355363 CGAACCACACGGCGAAGA 60.355 61.111 16.62 0.00 34.57 2.87
110 111 2.654912 CGAACCACACGGCGAAGAC 61.655 63.158 16.62 0.00 34.57 3.01
141 142 4.821589 CCTCCTTGCCCGCGTCTC 62.822 72.222 4.92 0.00 0.00 3.36
142 143 4.821589 CTCCTTGCCCGCGTCTCC 62.822 72.222 4.92 0.00 0.00 3.71
161 162 4.099170 GTGCTGCAGCGCCTTCTG 62.099 66.667 36.52 0.00 45.15 3.02
167 168 2.818714 CAGCGCCTTCTGCCTCAG 60.819 66.667 2.29 0.00 36.24 3.35
168 169 2.999648 AGCGCCTTCTGCCTCAGA 61.000 61.111 2.29 0.00 38.87 3.27
169 170 2.046892 GCGCCTTCTGCCTCAGAA 60.047 61.111 0.00 8.72 46.50 3.02
170 171 2.394563 GCGCCTTCTGCCTCAGAAC 61.395 63.158 0.00 0.00 44.27 3.01
171 172 1.004560 CGCCTTCTGCCTCAGAACA 60.005 57.895 5.25 0.00 44.27 3.18
172 173 0.603707 CGCCTTCTGCCTCAGAACAA 60.604 55.000 5.25 0.00 44.27 2.83
173 174 1.609208 GCCTTCTGCCTCAGAACAAA 58.391 50.000 5.25 0.00 44.27 2.83
174 175 2.165998 GCCTTCTGCCTCAGAACAAAT 58.834 47.619 5.25 0.00 44.27 2.32
175 176 2.163211 GCCTTCTGCCTCAGAACAAATC 59.837 50.000 5.25 0.00 44.27 2.17
176 177 3.683802 CCTTCTGCCTCAGAACAAATCT 58.316 45.455 5.25 0.00 44.27 2.40
177 178 3.688673 CCTTCTGCCTCAGAACAAATCTC 59.311 47.826 5.25 0.00 44.27 2.75
178 179 4.565236 CCTTCTGCCTCAGAACAAATCTCT 60.565 45.833 5.25 0.00 44.27 3.10
179 180 4.630644 TCTGCCTCAGAACAAATCTCTT 57.369 40.909 0.00 0.00 37.57 2.85
180 181 4.573900 TCTGCCTCAGAACAAATCTCTTC 58.426 43.478 0.00 0.00 37.57 2.87
181 182 3.329386 TGCCTCAGAACAAATCTCTTCG 58.671 45.455 0.00 0.00 35.73 3.79
182 183 2.095053 GCCTCAGAACAAATCTCTTCGC 59.905 50.000 0.00 0.00 35.73 4.70
183 184 3.329386 CCTCAGAACAAATCTCTTCGCA 58.671 45.455 0.00 0.00 35.73 5.10
184 185 3.124297 CCTCAGAACAAATCTCTTCGCAC 59.876 47.826 0.00 0.00 35.73 5.34
185 186 2.731451 TCAGAACAAATCTCTTCGCACG 59.269 45.455 0.00 0.00 35.73 5.34
186 187 2.731451 CAGAACAAATCTCTTCGCACGA 59.269 45.455 0.00 0.00 35.73 4.35
187 188 2.731976 AGAACAAATCTCTTCGCACGAC 59.268 45.455 0.00 0.00 30.46 4.34
188 189 2.148916 ACAAATCTCTTCGCACGACA 57.851 45.000 0.00 0.00 0.00 4.35
189 190 1.792949 ACAAATCTCTTCGCACGACAC 59.207 47.619 0.00 0.00 0.00 3.67
190 191 1.126846 CAAATCTCTTCGCACGACACC 59.873 52.381 0.00 0.00 0.00 4.16
191 192 0.317160 AATCTCTTCGCACGACACCA 59.683 50.000 0.00 0.00 0.00 4.17
192 193 0.388649 ATCTCTTCGCACGACACCAC 60.389 55.000 0.00 0.00 0.00 4.16
193 194 2.354188 TCTTCGCACGACACCACG 60.354 61.111 0.00 0.00 39.31 4.94
194 195 2.354188 CTTCGCACGACACCACGA 60.354 61.111 0.00 0.00 37.03 4.35
195 196 2.645510 CTTCGCACGACACCACGAC 61.646 63.158 0.00 0.00 33.69 4.34
196 197 4.634133 TCGCACGACACCACGACC 62.634 66.667 0.00 0.00 37.03 4.79
197 198 4.934942 CGCACGACACCACGACCA 62.935 66.667 0.00 0.00 37.03 4.02
198 199 3.036084 GCACGACACCACGACCAG 61.036 66.667 0.00 0.00 37.03 4.00
199 200 2.725641 CACGACACCACGACCAGA 59.274 61.111 0.00 0.00 37.03 3.86
200 201 1.289066 CACGACACCACGACCAGAT 59.711 57.895 0.00 0.00 37.03 2.90
201 202 1.008875 CACGACACCACGACCAGATG 61.009 60.000 0.00 0.00 37.03 2.90
202 203 2.094659 CGACACCACGACCAGATGC 61.095 63.158 0.00 0.00 35.09 3.91
203 204 1.741770 GACACCACGACCAGATGCC 60.742 63.158 0.00 0.00 0.00 4.40
204 205 2.347114 CACCACGACCAGATGCCA 59.653 61.111 0.00 0.00 0.00 4.92
205 206 2.034879 CACCACGACCAGATGCCAC 61.035 63.158 0.00 0.00 0.00 5.01
206 207 2.436646 CCACGACCAGATGCCACC 60.437 66.667 0.00 0.00 0.00 4.61
207 208 2.665000 CACGACCAGATGCCACCT 59.335 61.111 0.00 0.00 0.00 4.00
208 209 1.742880 CACGACCAGATGCCACCTG 60.743 63.158 0.00 0.00 0.00 4.00
240 241 3.273048 GCAGCGCCACCATTGTAA 58.727 55.556 2.29 0.00 0.00 2.41
241 242 1.137404 GCAGCGCCACCATTGTAAG 59.863 57.895 2.29 0.00 0.00 2.34
242 243 1.305219 GCAGCGCCACCATTGTAAGA 61.305 55.000 2.29 0.00 0.00 2.10
243 244 0.729116 CAGCGCCACCATTGTAAGAG 59.271 55.000 2.29 0.00 0.00 2.85
244 245 0.613260 AGCGCCACCATTGTAAGAGA 59.387 50.000 2.29 0.00 0.00 3.10
245 246 1.210478 AGCGCCACCATTGTAAGAGAT 59.790 47.619 2.29 0.00 0.00 2.75
246 247 2.017049 GCGCCACCATTGTAAGAGATT 58.983 47.619 0.00 0.00 0.00 2.40
247 248 3.118408 AGCGCCACCATTGTAAGAGATTA 60.118 43.478 2.29 0.00 0.00 1.75
248 249 3.248602 GCGCCACCATTGTAAGAGATTAG 59.751 47.826 0.00 0.00 0.00 1.73
249 250 4.693283 CGCCACCATTGTAAGAGATTAGA 58.307 43.478 0.00 0.00 0.00 2.10
250 251 5.116180 CGCCACCATTGTAAGAGATTAGAA 58.884 41.667 0.00 0.00 0.00 2.10
251 252 5.584649 CGCCACCATTGTAAGAGATTAGAAA 59.415 40.000 0.00 0.00 0.00 2.52
252 253 6.093495 CGCCACCATTGTAAGAGATTAGAAAA 59.907 38.462 0.00 0.00 0.00 2.29
253 254 7.475840 GCCACCATTGTAAGAGATTAGAAAAG 58.524 38.462 0.00 0.00 0.00 2.27
254 255 7.475840 CCACCATTGTAAGAGATTAGAAAAGC 58.524 38.462 0.00 0.00 0.00 3.51
255 256 7.121168 CCACCATTGTAAGAGATTAGAAAAGCA 59.879 37.037 0.00 0.00 0.00 3.91
256 257 8.514594 CACCATTGTAAGAGATTAGAAAAGCAA 58.485 33.333 0.00 0.00 0.00 3.91
257 258 9.077885 ACCATTGTAAGAGATTAGAAAAGCAAA 57.922 29.630 0.00 0.00 0.00 3.68
266 267 7.319142 AGATTAGAAAAGCAAATCTCTCTGC 57.681 36.000 0.00 0.00 35.55 4.26
272 273 2.898705 AGCAAATCTCTCTGCTAACCG 58.101 47.619 0.00 0.00 46.92 4.44
273 274 1.328986 GCAAATCTCTCTGCTAACCGC 59.671 52.381 0.00 0.00 35.62 5.68
274 275 1.590238 CAAATCTCTCTGCTAACCGCG 59.410 52.381 0.00 0.00 43.27 6.46
275 276 0.103208 AATCTCTCTGCTAACCGCGG 59.897 55.000 26.86 26.86 46.72 6.46
276 277 1.739338 ATCTCTCTGCTAACCGCGGG 61.739 60.000 31.76 13.36 45.36 6.13
291 292 2.915137 GGGGCACGGGAAAGCAAA 60.915 61.111 0.00 0.00 0.00 3.68
292 293 2.650778 GGGCACGGGAAAGCAAAG 59.349 61.111 0.00 0.00 0.00 2.77
293 294 2.049156 GGCACGGGAAAGCAAAGC 60.049 61.111 0.00 0.00 0.00 3.51
294 295 2.727544 GCACGGGAAAGCAAAGCA 59.272 55.556 0.00 0.00 0.00 3.91
295 296 1.661509 GCACGGGAAAGCAAAGCAC 60.662 57.895 0.00 0.00 0.00 4.40
296 297 1.732917 CACGGGAAAGCAAAGCACA 59.267 52.632 0.00 0.00 0.00 4.57
297 298 0.318107 CACGGGAAAGCAAAGCACAG 60.318 55.000 0.00 0.00 0.00 3.66
298 299 0.465460 ACGGGAAAGCAAAGCACAGA 60.465 50.000 0.00 0.00 0.00 3.41
299 300 0.040067 CGGGAAAGCAAAGCACAGAC 60.040 55.000 0.00 0.00 0.00 3.51
300 301 0.315251 GGGAAAGCAAAGCACAGACC 59.685 55.000 0.00 0.00 0.00 3.85
301 302 0.040067 GGAAAGCAAAGCACAGACCG 60.040 55.000 0.00 0.00 0.00 4.79
302 303 0.040067 GAAAGCAAAGCACAGACCGG 60.040 55.000 0.00 0.00 0.00 5.28
303 304 0.751643 AAAGCAAAGCACAGACCGGT 60.752 50.000 6.92 6.92 0.00 5.28
304 305 1.447317 AAGCAAAGCACAGACCGGTG 61.447 55.000 14.63 0.00 41.72 4.94
305 306 2.908073 GCAAAGCACAGACCGGTGG 61.908 63.158 14.63 6.56 39.19 4.61
308 309 3.057337 AGCACAGACCGGTGGTAC 58.943 61.111 14.63 4.75 46.72 3.34
309 310 2.431942 GCACAGACCGGTGGTACG 60.432 66.667 14.63 0.00 39.19 3.67
318 319 3.993584 GGTGGTACGGACGCACCA 61.994 66.667 25.14 12.47 42.24 4.17
320 321 3.993584 TGGTACGGACGCACCACC 61.994 66.667 12.47 5.72 39.91 4.61
321 322 3.993584 GGTACGGACGCACCACCA 61.994 66.667 9.13 0.00 35.52 4.17
322 323 2.431942 GTACGGACGCACCACCAG 60.432 66.667 0.00 0.00 38.90 4.00
323 324 2.598099 TACGGACGCACCACCAGA 60.598 61.111 0.00 0.00 38.90 3.86
324 325 2.201708 TACGGACGCACCACCAGAA 61.202 57.895 0.00 0.00 38.90 3.02
325 326 1.746322 TACGGACGCACCACCAGAAA 61.746 55.000 0.00 0.00 38.90 2.52
326 327 1.890041 CGGACGCACCACCAGAAAA 60.890 57.895 0.43 0.00 38.90 2.29
327 328 1.652563 GGACGCACCACCAGAAAAC 59.347 57.895 0.00 0.00 38.79 2.43
328 329 0.818040 GGACGCACCACCAGAAAACT 60.818 55.000 0.00 0.00 38.79 2.66
329 330 0.307760 GACGCACCACCAGAAAACTG 59.692 55.000 0.00 0.00 0.00 3.16
330 331 1.008538 CGCACCACCAGAAAACTGC 60.009 57.895 0.00 0.00 0.00 4.40
331 332 1.363807 GCACCACCAGAAAACTGCC 59.636 57.895 0.00 0.00 0.00 4.85
332 333 1.654220 CACCACCAGAAAACTGCCG 59.346 57.895 0.00 0.00 0.00 5.69
333 334 1.101049 CACCACCAGAAAACTGCCGT 61.101 55.000 0.00 0.00 0.00 5.68
334 335 1.101049 ACCACCAGAAAACTGCCGTG 61.101 55.000 0.00 0.00 0.00 4.94
335 336 1.008538 CACCAGAAAACTGCCGTGC 60.009 57.895 0.00 0.00 0.00 5.34
336 337 2.193536 ACCAGAAAACTGCCGTGCC 61.194 57.895 0.00 0.00 0.00 5.01
337 338 2.192861 CCAGAAAACTGCCGTGCCA 61.193 57.895 0.00 0.00 0.00 4.92
338 339 1.008538 CAGAAAACTGCCGTGCCAC 60.009 57.895 0.00 0.00 0.00 5.01
339 340 1.152963 AGAAAACTGCCGTGCCACT 60.153 52.632 0.00 0.00 0.00 4.00
340 341 1.166531 AGAAAACTGCCGTGCCACTC 61.167 55.000 0.00 0.00 0.00 3.51
341 342 2.130073 GAAAACTGCCGTGCCACTCC 62.130 60.000 0.00 0.00 0.00 3.85
342 343 2.902423 AAAACTGCCGTGCCACTCCA 62.902 55.000 0.00 0.00 0.00 3.86
343 344 4.626081 ACTGCCGTGCCACTCCAC 62.626 66.667 0.00 0.00 0.00 4.02
344 345 4.320456 CTGCCGTGCCACTCCACT 62.320 66.667 0.00 0.00 33.60 4.00
345 346 4.314440 TGCCGTGCCACTCCACTC 62.314 66.667 0.00 0.00 33.60 3.51
347 348 4.742201 CCGTGCCACTCCACTCCG 62.742 72.222 0.00 0.00 33.60 4.63
349 350 4.008933 GTGCCACTCCACTCCGCT 62.009 66.667 0.00 0.00 33.02 5.52
350 351 3.695606 TGCCACTCCACTCCGCTC 61.696 66.667 0.00 0.00 0.00 5.03
351 352 4.459089 GCCACTCCACTCCGCTCC 62.459 72.222 0.00 0.00 0.00 4.70
352 353 4.135153 CCACTCCACTCCGCTCCG 62.135 72.222 0.00 0.00 0.00 4.63
376 377 4.676586 CGCACACCGCCGTTTTCC 62.677 66.667 0.00 0.00 37.30 3.13
377 378 4.676586 GCACACCGCCGTTTTCCG 62.677 66.667 0.00 0.00 32.94 4.30
378 379 4.676586 CACACCGCCGTTTTCCGC 62.677 66.667 0.00 0.00 34.38 5.54
384 385 4.337060 GCCGTTTTCCGCCCACAC 62.337 66.667 0.00 0.00 34.38 3.82
385 386 2.902846 CCGTTTTCCGCCCACACA 60.903 61.111 0.00 0.00 34.38 3.72
386 387 2.482333 CCGTTTTCCGCCCACACAA 61.482 57.895 0.00 0.00 34.38 3.33
387 388 1.298788 CGTTTTCCGCCCACACAAC 60.299 57.895 0.00 0.00 0.00 3.32
388 389 1.810532 GTTTTCCGCCCACACAACA 59.189 52.632 0.00 0.00 0.00 3.33
389 390 0.526739 GTTTTCCGCCCACACAACAC 60.527 55.000 0.00 0.00 0.00 3.32
390 391 0.965866 TTTTCCGCCCACACAACACA 60.966 50.000 0.00 0.00 0.00 3.72
391 392 0.965866 TTTCCGCCCACACAACACAA 60.966 50.000 0.00 0.00 0.00 3.33
392 393 1.380403 TTCCGCCCACACAACACAAG 61.380 55.000 0.00 0.00 0.00 3.16
393 394 2.721231 CGCCCACACAACACAAGG 59.279 61.111 0.00 0.00 0.00 3.61
394 395 2.417097 GCCCACACAACACAAGGC 59.583 61.111 0.00 0.00 0.00 4.35
395 396 3.128375 CCCACACAACACAAGGCC 58.872 61.111 0.00 0.00 0.00 5.19
396 397 1.756172 CCCACACAACACAAGGCCA 60.756 57.895 5.01 0.00 0.00 5.36
397 398 1.735360 CCACACAACACAAGGCCAG 59.265 57.895 5.01 0.00 0.00 4.85
398 399 1.066257 CACACAACACAAGGCCAGC 59.934 57.895 5.01 0.00 0.00 4.85
399 400 2.127232 ACACAACACAAGGCCAGCC 61.127 57.895 5.01 0.00 0.00 4.85
400 401 2.126596 CACAACACAAGGCCAGCCA 61.127 57.895 12.03 0.00 38.92 4.75
401 402 1.829533 ACAACACAAGGCCAGCCAG 60.830 57.895 12.03 5.51 38.92 4.85
402 403 2.914097 AACACAAGGCCAGCCAGC 60.914 61.111 12.03 0.00 38.92 4.85
420 421 3.882013 CACGCGCCCACACACAAA 61.882 61.111 5.73 0.00 0.00 2.83
421 422 3.582120 ACGCGCCCACACACAAAG 61.582 61.111 5.73 0.00 0.00 2.77
422 423 3.582120 CGCGCCCACACACAAAGT 61.582 61.111 0.00 0.00 0.00 2.66
423 424 2.248135 CGCGCCCACACACAAAGTA 61.248 57.895 0.00 0.00 0.00 2.24
424 425 1.573829 CGCGCCCACACACAAAGTAT 61.574 55.000 0.00 0.00 0.00 2.12
425 426 1.444836 GCGCCCACACACAAAGTATA 58.555 50.000 0.00 0.00 0.00 1.47
426 427 1.396996 GCGCCCACACACAAAGTATAG 59.603 52.381 0.00 0.00 0.00 1.31
427 428 2.933492 GCGCCCACACACAAAGTATAGA 60.933 50.000 0.00 0.00 0.00 1.98
428 429 3.531538 CGCCCACACACAAAGTATAGAT 58.468 45.455 0.00 0.00 0.00 1.98
429 430 3.555956 CGCCCACACACAAAGTATAGATC 59.444 47.826 0.00 0.00 0.00 2.75
430 431 4.680708 CGCCCACACACAAAGTATAGATCT 60.681 45.833 0.00 0.00 0.00 2.75
431 432 4.572389 GCCCACACACAAAGTATAGATCTG 59.428 45.833 5.18 0.00 0.00 2.90
432 433 4.572389 CCCACACACAAAGTATAGATCTGC 59.428 45.833 5.18 0.00 0.00 4.26
433 434 4.572389 CCACACACAAAGTATAGATCTGCC 59.428 45.833 5.18 0.00 0.00 4.85
434 435 4.268644 CACACACAAAGTATAGATCTGCCG 59.731 45.833 5.18 0.00 0.00 5.69
435 436 4.159693 ACACACAAAGTATAGATCTGCCGA 59.840 41.667 5.18 0.00 0.00 5.54
436 437 4.504461 CACACAAAGTATAGATCTGCCGAC 59.496 45.833 5.18 0.00 0.00 4.79
437 438 4.051922 CACAAAGTATAGATCTGCCGACC 58.948 47.826 5.18 0.00 0.00 4.79
438 439 3.243434 ACAAAGTATAGATCTGCCGACCG 60.243 47.826 5.18 0.00 0.00 4.79
439 440 2.563261 AGTATAGATCTGCCGACCGA 57.437 50.000 5.18 0.00 0.00 4.69
440 441 2.428491 AGTATAGATCTGCCGACCGAG 58.572 52.381 5.18 0.00 0.00 4.63
441 442 1.135632 GTATAGATCTGCCGACCGAGC 60.136 57.143 5.18 0.00 0.00 5.03
442 443 1.857318 ATAGATCTGCCGACCGAGCG 61.857 60.000 5.18 0.00 0.00 5.03
469 470 4.959596 GCTGCTCCGCTCCCGATC 62.960 72.222 0.00 0.00 36.29 3.69
470 471 4.637489 CTGCTCCGCTCCCGATCG 62.637 72.222 8.51 8.51 36.29 3.69
472 473 4.335584 GCTCCGCTCCCGATCGAG 62.336 72.222 18.66 8.18 36.29 4.04
473 474 2.592001 CTCCGCTCCCGATCGAGA 60.592 66.667 18.66 8.18 36.29 4.04
474 475 2.899044 CTCCGCTCCCGATCGAGAC 61.899 68.421 18.66 2.95 36.29 3.36
475 476 4.315122 CCGCTCCCGATCGAGACG 62.315 72.222 18.66 14.60 36.29 4.18
481 482 4.570663 CCGATCGAGACGGGCCAC 62.571 72.222 18.66 0.00 45.65 5.01
482 483 3.822192 CGATCGAGACGGGCCACA 61.822 66.667 10.26 0.00 0.00 4.17
483 484 2.202756 GATCGAGACGGGCCACAC 60.203 66.667 4.39 0.00 0.00 3.82
484 485 4.129737 ATCGAGACGGGCCACACG 62.130 66.667 4.39 7.77 37.36 4.49
519 520 2.202756 CGGAGTAGGTGCGGCTTC 60.203 66.667 0.00 0.00 36.11 3.86
520 521 2.978824 GGAGTAGGTGCGGCTTCA 59.021 61.111 0.00 0.00 0.00 3.02
521 522 1.522569 GGAGTAGGTGCGGCTTCAT 59.477 57.895 0.00 0.00 0.00 2.57
522 523 0.107654 GGAGTAGGTGCGGCTTCATT 60.108 55.000 0.00 0.00 0.00 2.57
523 524 1.291132 GAGTAGGTGCGGCTTCATTC 58.709 55.000 0.00 0.00 0.00 2.67
524 525 0.107654 AGTAGGTGCGGCTTCATTCC 60.108 55.000 0.00 0.00 0.00 3.01
525 526 0.392461 GTAGGTGCGGCTTCATTCCA 60.392 55.000 0.00 0.00 0.00 3.53
526 527 0.546122 TAGGTGCGGCTTCATTCCAT 59.454 50.000 0.00 0.00 0.00 3.41
527 528 0.749454 AGGTGCGGCTTCATTCCATC 60.749 55.000 0.00 0.00 0.00 3.51
528 529 1.728490 GGTGCGGCTTCATTCCATCC 61.728 60.000 0.00 0.00 0.00 3.51
529 530 1.453745 TGCGGCTTCATTCCATCCC 60.454 57.895 0.00 0.00 0.00 3.85
530 531 1.453745 GCGGCTTCATTCCATCCCA 60.454 57.895 0.00 0.00 0.00 4.37
531 532 0.825010 GCGGCTTCATTCCATCCCAT 60.825 55.000 0.00 0.00 0.00 4.00
532 533 1.242076 CGGCTTCATTCCATCCCATC 58.758 55.000 0.00 0.00 0.00 3.51
533 534 1.477377 CGGCTTCATTCCATCCCATCA 60.477 52.381 0.00 0.00 0.00 3.07
534 535 2.816712 CGGCTTCATTCCATCCCATCAT 60.817 50.000 0.00 0.00 0.00 2.45
535 536 2.824341 GGCTTCATTCCATCCCATCATC 59.176 50.000 0.00 0.00 0.00 2.92
536 537 3.493334 GCTTCATTCCATCCCATCATCA 58.507 45.455 0.00 0.00 0.00 3.07
537 538 4.087182 GCTTCATTCCATCCCATCATCAT 58.913 43.478 0.00 0.00 0.00 2.45
538 539 4.158025 GCTTCATTCCATCCCATCATCATC 59.842 45.833 0.00 0.00 0.00 2.92
539 540 4.311520 TCATTCCATCCCATCATCATCC 57.688 45.455 0.00 0.00 0.00 3.51
540 541 3.010920 TCATTCCATCCCATCATCATCCC 59.989 47.826 0.00 0.00 0.00 3.85
541 542 0.986527 TCCATCCCATCATCATCCCG 59.013 55.000 0.00 0.00 0.00 5.14
542 543 0.694771 CCATCCCATCATCATCCCGT 59.305 55.000 0.00 0.00 0.00 5.28
543 544 1.339438 CCATCCCATCATCATCCCGTC 60.339 57.143 0.00 0.00 0.00 4.79
544 545 0.987294 ATCCCATCATCATCCCGTCC 59.013 55.000 0.00 0.00 0.00 4.79
545 546 1.004560 CCCATCATCATCCCGTCCG 60.005 63.158 0.00 0.00 0.00 4.79
546 547 1.471829 CCCATCATCATCCCGTCCGA 61.472 60.000 0.00 0.00 0.00 4.55
547 548 0.037882 CCATCATCATCCCGTCCGAG 60.038 60.000 0.00 0.00 0.00 4.63
548 549 0.037882 CATCATCATCCCGTCCGAGG 60.038 60.000 0.00 0.00 0.00 4.63
549 550 1.821061 ATCATCATCCCGTCCGAGGC 61.821 60.000 0.00 0.00 0.00 4.70
550 551 3.606662 ATCATCCCGTCCGAGGCG 61.607 66.667 0.00 0.00 0.00 5.52
564 565 4.101448 GGCGCCACCTCACTCCAT 62.101 66.667 24.80 0.00 34.51 3.41
565 566 2.512515 GCGCCACCTCACTCCATC 60.513 66.667 0.00 0.00 0.00 3.51
566 567 3.023949 GCGCCACCTCACTCCATCT 62.024 63.158 0.00 0.00 0.00 2.90
567 568 1.142748 CGCCACCTCACTCCATCTC 59.857 63.158 0.00 0.00 0.00 2.75
568 569 1.326213 CGCCACCTCACTCCATCTCT 61.326 60.000 0.00 0.00 0.00 3.10
569 570 0.908198 GCCACCTCACTCCATCTCTT 59.092 55.000 0.00 0.00 0.00 2.85
570 571 1.134551 GCCACCTCACTCCATCTCTTC 60.135 57.143 0.00 0.00 0.00 2.87
571 572 2.465813 CCACCTCACTCCATCTCTTCT 58.534 52.381 0.00 0.00 0.00 2.85
572 573 2.836981 CCACCTCACTCCATCTCTTCTT 59.163 50.000 0.00 0.00 0.00 2.52
573 574 3.369261 CCACCTCACTCCATCTCTTCTTG 60.369 52.174 0.00 0.00 0.00 3.02
574 575 2.235898 ACCTCACTCCATCTCTTCTTGC 59.764 50.000 0.00 0.00 0.00 4.01
575 576 2.235650 CCTCACTCCATCTCTTCTTGCA 59.764 50.000 0.00 0.00 0.00 4.08
576 577 3.260740 CTCACTCCATCTCTTCTTGCAC 58.739 50.000 0.00 0.00 0.00 4.57
577 578 1.998315 CACTCCATCTCTTCTTGCACG 59.002 52.381 0.00 0.00 0.00 5.34
578 579 1.005340 CTCCATCTCTTCTTGCACGC 58.995 55.000 0.00 0.00 0.00 5.34
579 580 0.391661 TCCATCTCTTCTTGCACGCC 60.392 55.000 0.00 0.00 0.00 5.68
580 581 1.699656 CCATCTCTTCTTGCACGCCG 61.700 60.000 0.00 0.00 0.00 6.46
581 582 1.448540 ATCTCTTCTTGCACGCCGG 60.449 57.895 0.00 0.00 0.00 6.13
582 583 3.793144 CTCTTCTTGCACGCCGGC 61.793 66.667 19.07 19.07 0.00 6.13
612 613 3.882326 CAGCCCGGCCCATCTCAT 61.882 66.667 5.55 0.00 0.00 2.90
613 614 3.564218 AGCCCGGCCCATCTCATC 61.564 66.667 5.55 0.00 0.00 2.92
614 615 4.650377 GCCCGGCCCATCTCATCC 62.650 72.222 0.00 0.00 0.00 3.51
615 616 3.958860 CCCGGCCCATCTCATCCC 61.959 72.222 0.00 0.00 0.00 3.85
616 617 3.170672 CCGGCCCATCTCATCCCA 61.171 66.667 0.00 0.00 0.00 4.37
617 618 2.532532 CCGGCCCATCTCATCCCAT 61.533 63.158 0.00 0.00 0.00 4.00
618 619 1.002868 CGGCCCATCTCATCCCATC 60.003 63.158 0.00 0.00 0.00 3.51
619 620 1.381851 GGCCCATCTCATCCCATCC 59.618 63.158 0.00 0.00 0.00 3.51
689 690 4.892965 TGGCCAGCACACCACACC 62.893 66.667 0.00 0.00 0.00 4.16
690 691 4.892965 GGCCAGCACACCACACCA 62.893 66.667 0.00 0.00 0.00 4.17
691 692 3.595758 GCCAGCACACCACACCAC 61.596 66.667 0.00 0.00 0.00 4.16
692 693 2.124362 CCAGCACACCACACCACA 60.124 61.111 0.00 0.00 0.00 4.17
693 694 2.480610 CCAGCACACCACACCACAC 61.481 63.158 0.00 0.00 0.00 3.82
694 695 2.124320 AGCACACCACACCACACC 60.124 61.111 0.00 0.00 0.00 4.16
695 696 2.439338 GCACACCACACCACACCA 60.439 61.111 0.00 0.00 0.00 4.17
696 697 2.770589 GCACACCACACCACACCAC 61.771 63.158 0.00 0.00 0.00 4.16
697 698 2.124901 ACACCACACCACACCACG 60.125 61.111 0.00 0.00 0.00 4.94
698 699 3.582120 CACCACACCACACCACGC 61.582 66.667 0.00 0.00 0.00 5.34
701 702 2.542907 CCACACCACACCACGCTTC 61.543 63.158 0.00 0.00 0.00 3.86
1224 1234 1.684049 CTCCTCCTTCCACGGCTCT 60.684 63.158 0.00 0.00 0.00 4.09
1334 1350 3.607299 TCCTCCTCCGACCCCCAA 61.607 66.667 0.00 0.00 0.00 4.12
1563 1595 4.021925 GAGCCCAACGCCTCTGGT 62.022 66.667 0.00 0.00 38.78 4.00
1641 1673 0.179100 CCGTCGAGCTCATGTTCCAT 60.179 55.000 15.40 0.00 0.00 3.41
1721 1758 4.197750 GAGGTGAGAATGAGATGCACATT 58.802 43.478 0.95 0.95 40.08 2.71
1730 1767 4.142609 TGAGATGCACATTCTTCCCTAC 57.857 45.455 0.00 0.00 0.00 3.18
1731 1768 3.776969 TGAGATGCACATTCTTCCCTACT 59.223 43.478 0.00 0.00 0.00 2.57
1748 1785 5.127194 TCCCTACTCTATTTGCTGTACAGTG 59.873 44.000 23.44 0.92 0.00 3.66
1764 1801 4.727507 ACAGTGCAGTTCTGATAGGTAG 57.272 45.455 9.59 0.00 36.81 3.18
1768 1805 6.617131 CAGTGCAGTTCTGATAGGTAGACCT 61.617 48.000 6.44 6.44 41.19 3.85
1878 1915 8.866956 CCTTTGAAATTTTATGAGCTTGATGAC 58.133 33.333 0.00 0.00 0.00 3.06
1944 1982 7.656707 AGATGCACATGTTTTTGGATTTTAC 57.343 32.000 0.00 0.00 0.00 2.01
1961 1999 0.035176 TACCCTGTTGTAACGGTGGC 59.965 55.000 3.17 0.00 33.38 5.01
1962 2000 2.322081 CCCTGTTGTAACGGTGGCG 61.322 63.158 3.17 0.00 33.38 5.69
1996 2042 4.336433 CGTCCTAATCACTGGAATTGCATT 59.664 41.667 0.00 0.00 33.72 3.56
2043 2089 4.955925 CGAAGCCACATTTGTTATGGTA 57.044 40.909 0.00 0.00 35.79 3.25
2044 2090 4.658071 CGAAGCCACATTTGTTATGGTAC 58.342 43.478 0.00 0.00 35.79 3.34
2064 2110 6.873076 TGGTACGAGTTATACCGACAATTTTT 59.127 34.615 0.00 0.00 44.46 1.94
2084 2130 2.680913 GCTGGTGCAAGCCGTACAG 61.681 63.158 0.00 0.00 37.20 2.74
2098 2146 4.398044 AGCCGTACAGTTTTTGGGATTATG 59.602 41.667 0.00 0.00 0.00 1.90
2129 2177 3.883830 AGCTGAGACCAGTATGTCTTG 57.116 47.619 0.00 0.00 45.41 3.02
2155 2245 5.472137 TGAGAAATACAAGTGCCACCTTAAC 59.528 40.000 0.00 0.00 0.00 2.01
2156 2246 5.381757 AGAAATACAAGTGCCACCTTAACA 58.618 37.500 0.00 0.00 0.00 2.41
2157 2247 6.010219 AGAAATACAAGTGCCACCTTAACAT 58.990 36.000 0.00 0.00 0.00 2.71
2158 2248 7.172342 AGAAATACAAGTGCCACCTTAACATA 58.828 34.615 0.00 0.00 0.00 2.29
2159 2249 7.668052 AGAAATACAAGTGCCACCTTAACATAA 59.332 33.333 0.00 0.00 0.00 1.90
2160 2250 7.768807 AATACAAGTGCCACCTTAACATAAA 57.231 32.000 0.00 0.00 0.00 1.40
2161 2251 7.954666 ATACAAGTGCCACCTTAACATAAAT 57.045 32.000 0.00 0.00 0.00 1.40
2162 2252 6.664428 ACAAGTGCCACCTTAACATAAATT 57.336 33.333 0.00 0.00 0.00 1.82
2163 2253 7.061566 ACAAGTGCCACCTTAACATAAATTT 57.938 32.000 0.00 0.00 0.00 1.82
2164 2254 8.184304 ACAAGTGCCACCTTAACATAAATTTA 57.816 30.769 0.00 0.00 0.00 1.40
2165 2255 8.811994 ACAAGTGCCACCTTAACATAAATTTAT 58.188 29.630 4.81 4.81 0.00 1.40
2166 2256 9.086336 CAAGTGCCACCTTAACATAAATTTATG 57.914 33.333 28.67 28.67 44.66 1.90
2167 2257 8.588290 AGTGCCACCTTAACATAAATTTATGA 57.412 30.769 34.28 17.26 42.38 2.15
2168 2258 9.200817 AGTGCCACCTTAACATAAATTTATGAT 57.799 29.630 34.28 27.41 42.38 2.45
2169 2259 9.816354 GTGCCACCTTAACATAAATTTATGATT 57.184 29.630 34.28 26.24 42.38 2.57
2186 2276 8.433421 TTTATGATTTGTACTAGTTAGGCTGC 57.567 34.615 0.00 0.00 0.00 5.25
2187 2277 5.677319 TGATTTGTACTAGTTAGGCTGCT 57.323 39.130 0.00 0.00 0.00 4.24
2188 2278 6.785337 TGATTTGTACTAGTTAGGCTGCTA 57.215 37.500 0.00 0.00 0.00 3.49
2189 2279 7.177832 TGATTTGTACTAGTTAGGCTGCTAA 57.822 36.000 0.00 0.00 0.00 3.09
2190 2280 7.039882 TGATTTGTACTAGTTAGGCTGCTAAC 58.960 38.462 0.00 6.73 39.40 2.34
2727 2821 3.127895 TGCACGCTGTTTATATTGAACCC 59.872 43.478 0.00 0.00 0.00 4.11
2771 2865 6.597562 TGGTGGTCTACATTTTTACAGAGTT 58.402 36.000 0.00 0.00 0.00 3.01
2791 2885 9.209175 CAGAGTTATACCAATTACAGATTAGGC 57.791 37.037 0.00 0.00 0.00 3.93
2807 2901 1.135315 GGCATGCAGTTGTACAGCG 59.865 57.895 21.36 1.09 32.90 5.18
2845 2939 6.254281 AGAACATTGTTTACACATGCTACC 57.746 37.500 3.08 0.00 31.06 3.18
2852 2946 9.022915 CATTGTTTACACATGCTACCAATATTG 57.977 33.333 8.58 8.58 31.06 1.90
2855 2949 2.618241 ACACATGCTACCAATATTGCCG 59.382 45.455 10.11 0.11 0.00 5.69
2857 2951 3.812609 CACATGCTACCAATATTGCCGTA 59.187 43.478 10.11 7.09 0.00 4.02
2858 2952 4.065088 ACATGCTACCAATATTGCCGTAG 58.935 43.478 19.60 19.60 32.97 3.51
2859 2953 3.830744 TGCTACCAATATTGCCGTAGT 57.169 42.857 22.38 13.38 32.51 2.73
2860 2954 3.462982 TGCTACCAATATTGCCGTAGTG 58.537 45.455 22.38 8.24 32.51 2.74
2861 2955 3.118555 TGCTACCAATATTGCCGTAGTGT 60.119 43.478 22.38 12.33 32.51 3.55
2862 2956 4.099727 TGCTACCAATATTGCCGTAGTGTA 59.900 41.667 22.38 12.68 32.51 2.90
2863 2957 4.446719 GCTACCAATATTGCCGTAGTGTAC 59.553 45.833 22.38 10.24 32.51 2.90
2864 2958 4.748277 ACCAATATTGCCGTAGTGTACT 57.252 40.909 10.11 0.00 0.00 2.73
2865 2959 5.093849 ACCAATATTGCCGTAGTGTACTT 57.906 39.130 10.11 0.00 0.00 2.24
2866 2960 5.114081 ACCAATATTGCCGTAGTGTACTTC 58.886 41.667 10.11 0.00 0.00 3.01
2867 2961 5.105064 ACCAATATTGCCGTAGTGTACTTCT 60.105 40.000 10.11 0.00 0.00 2.85
2868 2962 5.815740 CCAATATTGCCGTAGTGTACTTCTT 59.184 40.000 10.11 0.00 0.00 2.52
2869 2963 6.982141 CCAATATTGCCGTAGTGTACTTCTTA 59.018 38.462 10.11 0.00 0.00 2.10
2870 2964 7.493320 CCAATATTGCCGTAGTGTACTTCTTAA 59.507 37.037 10.11 0.00 0.00 1.85
2871 2965 8.540492 CAATATTGCCGTAGTGTACTTCTTAAG 58.460 37.037 1.74 0.00 0.00 1.85
2872 2966 5.458041 TTGCCGTAGTGTACTTCTTAAGT 57.542 39.130 1.63 0.00 45.40 2.24
2873 2967 5.458041 TGCCGTAGTGTACTTCTTAAGTT 57.542 39.130 1.63 0.00 42.81 2.66
2874 2968 5.846203 TGCCGTAGTGTACTTCTTAAGTTT 58.154 37.500 1.63 0.00 42.81 2.66
2875 2969 6.282930 TGCCGTAGTGTACTTCTTAAGTTTT 58.717 36.000 1.63 0.00 42.81 2.43
2876 2970 6.762661 TGCCGTAGTGTACTTCTTAAGTTTTT 59.237 34.615 1.63 0.00 42.81 1.94
2912 3006 5.942826 GGGTCTTCTTTCTGACATGATTCTT 59.057 40.000 0.00 0.00 35.11 2.52
3267 3361 6.748333 TTGATCAATGGTCTTCTAAGCAAG 57.252 37.500 3.38 0.00 0.00 4.01
3294 3388 8.270744 AGCTCAGTATATCAAAAGGATTTGTCT 58.729 33.333 1.69 0.00 45.02 3.41
3315 3409 5.944007 GTCTGGATTAAACAAAAGGAGCCTA 59.056 40.000 0.00 0.00 0.00 3.93
3339 3433 2.610433 CAGATTTGCTGCTCGTGTCTA 58.390 47.619 0.00 0.00 37.90 2.59
3371 3465 5.826208 TGGTGGAACTTTTTAAGGAAGACTC 59.174 40.000 7.44 4.41 36.74 3.36
3435 3529 7.125507 AGGCACAATAATAAACCCATGATTGAA 59.874 33.333 0.00 0.00 32.86 2.69
3585 3679 2.418197 GCCAATGTTCAGGTACGAGCTA 60.418 50.000 0.00 0.00 0.00 3.32
3642 3736 3.365265 GGGAAAGTGCAGTGCCCG 61.365 66.667 13.72 0.00 0.00 6.13
3723 3817 0.600057 GGCTTCAAAGGTGCTCCAAG 59.400 55.000 7.70 3.08 35.89 3.61
3801 3895 4.834453 CGGGAGCAGCAGAGCCTG 62.834 72.222 0.00 0.00 35.93 4.85
3834 3928 1.213013 CCAGTGCTTCGCGTCTAGT 59.787 57.895 5.77 0.00 0.00 2.57
3918 4012 1.867363 AGATTTGTCGGTAGAGCCCT 58.133 50.000 0.00 0.00 0.00 5.19
3936 4030 1.303074 TTGGAGCAGCAGAAGCCTG 60.303 57.895 0.00 0.00 43.56 4.85
4054 4152 7.541783 TGAATTTTTGTTTATGATCTTGGCTCG 59.458 33.333 0.00 0.00 0.00 5.03
4088 4186 5.449304 GTGTATGCACTACTTGACAAAACC 58.551 41.667 6.69 0.00 42.13 3.27
4089 4187 5.008217 GTGTATGCACTACTTGACAAAACCA 59.992 40.000 6.69 0.00 42.13 3.67
4090 4188 4.568152 ATGCACTACTTGACAAAACCAC 57.432 40.909 0.00 0.00 0.00 4.16
4091 4189 3.348119 TGCACTACTTGACAAAACCACA 58.652 40.909 0.00 0.00 0.00 4.17
4092 4190 3.759086 TGCACTACTTGACAAAACCACAA 59.241 39.130 0.00 0.00 0.00 3.33
4093 4191 4.400884 TGCACTACTTGACAAAACCACAAT 59.599 37.500 0.00 0.00 0.00 2.71
4094 4192 5.105554 TGCACTACTTGACAAAACCACAATT 60.106 36.000 0.00 0.00 0.00 2.32
4095 4193 5.458779 GCACTACTTGACAAAACCACAATTC 59.541 40.000 0.00 0.00 0.00 2.17
4096 4194 5.977129 CACTACTTGACAAAACCACAATTCC 59.023 40.000 0.00 0.00 0.00 3.01
4177 4275 6.422776 AATTAACAAGTGGACATAGCTTCG 57.577 37.500 0.00 0.00 0.00 3.79
4178 4276 3.402628 AACAAGTGGACATAGCTTCGT 57.597 42.857 0.00 0.00 0.00 3.85
4179 4277 2.960819 ACAAGTGGACATAGCTTCGTC 58.039 47.619 0.00 0.00 0.00 4.20
4182 4280 4.142359 ACAAGTGGACATAGCTTCGTCTAG 60.142 45.833 13.16 0.00 32.57 2.43
4200 4298 7.104290 TCGTCTAGAGTACATACATATCCCAG 58.896 42.308 0.00 0.00 0.00 4.45
4212 4310 1.484038 TATCCCAGTGGCAATTTGGC 58.516 50.000 15.53 15.53 44.03 4.52
4238 4336 3.915575 GCCTGAACATGGCCTCAG 58.084 61.111 11.84 11.84 44.32 3.35
4240 4338 1.310933 GCCTGAACATGGCCTCAGTG 61.311 60.000 16.23 10.10 44.32 3.66
4260 4358 3.118038 GTGTACATGGCCTTATTCCTGGA 60.118 47.826 3.32 0.00 0.00 3.86
4270 4368 5.163195 GGCCTTATTCCTGGAGAATTACAGA 60.163 44.000 0.00 0.00 42.86 3.41
4312 4436 5.301805 AGGGCAAACATTTATATACAGCACC 59.698 40.000 0.00 0.00 0.00 5.01
4317 4446 4.065088 ACATTTATATACAGCACCGGCAG 58.935 43.478 0.00 0.00 44.61 4.85
4437 4580 4.709840 CAGTGGCAGTCCTGGAAG 57.290 61.111 0.00 0.00 0.00 3.46
4626 4769 2.897350 GAAATGGGCTCGGCGGAG 60.897 66.667 16.48 16.48 43.46 4.63
4662 4805 4.847255 GTGAACACCATGCGCTTC 57.153 55.556 9.73 3.07 0.00 3.86
4668 4811 2.507102 ACCATGCGCTTCGAGTCG 60.507 61.111 9.73 6.09 0.00 4.18
4851 4994 2.272146 ATGGTGTCGGTCCATGGC 59.728 61.111 6.96 1.78 43.12 4.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 6.127897 GGTCAGTTCATCTCGATTCCATTTTT 60.128 38.462 0.00 0.00 0.00 1.94
19 20 5.355350 GGTCAGTTCATCTCGATTCCATTTT 59.645 40.000 0.00 0.00 0.00 1.82
20 21 4.878397 GGTCAGTTCATCTCGATTCCATTT 59.122 41.667 0.00 0.00 0.00 2.32
21 22 4.163078 AGGTCAGTTCATCTCGATTCCATT 59.837 41.667 0.00 0.00 0.00 3.16
22 23 3.708631 AGGTCAGTTCATCTCGATTCCAT 59.291 43.478 0.00 0.00 0.00 3.41
23 24 3.099905 AGGTCAGTTCATCTCGATTCCA 58.900 45.455 0.00 0.00 0.00 3.53
24 25 3.118956 ACAGGTCAGTTCATCTCGATTCC 60.119 47.826 0.00 0.00 0.00 3.01
25 26 3.862267 CACAGGTCAGTTCATCTCGATTC 59.138 47.826 0.00 0.00 0.00 2.52
26 27 3.511540 TCACAGGTCAGTTCATCTCGATT 59.488 43.478 0.00 0.00 0.00 3.34
27 28 3.092301 TCACAGGTCAGTTCATCTCGAT 58.908 45.455 0.00 0.00 0.00 3.59
28 29 2.514803 TCACAGGTCAGTTCATCTCGA 58.485 47.619 0.00 0.00 0.00 4.04
29 30 3.516981 ATCACAGGTCAGTTCATCTCG 57.483 47.619 0.00 0.00 0.00 4.04
30 31 4.869297 CAGAATCACAGGTCAGTTCATCTC 59.131 45.833 0.00 0.00 0.00 2.75
31 32 4.829968 CAGAATCACAGGTCAGTTCATCT 58.170 43.478 0.00 0.00 0.00 2.90
32 33 3.373439 GCAGAATCACAGGTCAGTTCATC 59.627 47.826 0.00 0.00 0.00 2.92
33 34 3.341823 GCAGAATCACAGGTCAGTTCAT 58.658 45.455 0.00 0.00 0.00 2.57
34 35 2.550855 GGCAGAATCACAGGTCAGTTCA 60.551 50.000 0.00 0.00 0.00 3.18
35 36 2.079925 GGCAGAATCACAGGTCAGTTC 58.920 52.381 0.00 0.00 0.00 3.01
36 37 1.271597 GGGCAGAATCACAGGTCAGTT 60.272 52.381 0.00 0.00 0.00 3.16
37 38 0.326264 GGGCAGAATCACAGGTCAGT 59.674 55.000 0.00 0.00 0.00 3.41
38 39 0.617413 AGGGCAGAATCACAGGTCAG 59.383 55.000 0.00 0.00 0.00 3.51
39 40 0.615331 GAGGGCAGAATCACAGGTCA 59.385 55.000 0.00 0.00 0.00 4.02
40 41 0.107459 GGAGGGCAGAATCACAGGTC 60.107 60.000 0.00 0.00 0.00 3.85
41 42 1.903877 CGGAGGGCAGAATCACAGGT 61.904 60.000 0.00 0.00 0.00 4.00
42 43 1.153289 CGGAGGGCAGAATCACAGG 60.153 63.158 0.00 0.00 0.00 4.00
43 44 1.817099 GCGGAGGGCAGAATCACAG 60.817 63.158 0.00 0.00 42.87 3.66
44 45 2.268920 GCGGAGGGCAGAATCACA 59.731 61.111 0.00 0.00 42.87 3.58
45 46 2.514824 GGCGGAGGGCAGAATCAC 60.515 66.667 0.00 0.00 46.16 3.06
46 47 3.008517 TGGCGGAGGGCAGAATCA 61.009 61.111 0.00 0.00 44.78 2.57
53 54 3.860930 TTCCTGTTTGGCGGAGGGC 62.861 63.158 0.00 0.00 42.51 5.19
54 55 1.675641 CTTCCTGTTTGGCGGAGGG 60.676 63.158 0.00 0.00 35.26 4.30
55 56 1.675641 CCTTCCTGTTTGGCGGAGG 60.676 63.158 0.00 0.00 35.26 4.30
56 57 2.335712 GCCTTCCTGTTTGGCGGAG 61.336 63.158 0.00 0.00 37.11 4.63
57 58 2.282180 GCCTTCCTGTTTGGCGGA 60.282 61.111 0.00 0.00 37.11 5.54
60 61 0.171231 GAATCGCCTTCCTGTTTGGC 59.829 55.000 0.00 0.00 42.94 4.52
61 62 1.470098 CAGAATCGCCTTCCTGTTTGG 59.530 52.381 0.00 0.00 34.11 3.28
62 63 1.135575 GCAGAATCGCCTTCCTGTTTG 60.136 52.381 0.00 0.00 34.11 2.93
63 64 1.168714 GCAGAATCGCCTTCCTGTTT 58.831 50.000 0.00 0.00 34.11 2.83
64 65 0.326264 AGCAGAATCGCCTTCCTGTT 59.674 50.000 0.00 0.00 34.11 3.16
65 66 0.107945 GAGCAGAATCGCCTTCCTGT 60.108 55.000 0.00 0.00 34.11 4.00
66 67 0.813210 GGAGCAGAATCGCCTTCCTG 60.813 60.000 0.00 0.00 34.11 3.86
67 68 0.980231 AGGAGCAGAATCGCCTTCCT 60.980 55.000 0.00 3.44 32.05 3.36
68 69 0.531753 GAGGAGCAGAATCGCCTTCC 60.532 60.000 0.00 0.00 36.36 3.46
69 70 0.531753 GGAGGAGCAGAATCGCCTTC 60.532 60.000 0.00 0.00 36.36 3.46
70 71 1.524482 GGAGGAGCAGAATCGCCTT 59.476 57.895 0.00 0.00 36.36 4.35
71 72 2.790791 CGGAGGAGCAGAATCGCCT 61.791 63.158 0.00 0.00 39.02 5.52
72 73 2.279784 CGGAGGAGCAGAATCGCC 60.280 66.667 0.00 0.00 0.00 5.54
73 74 2.964389 GCGGAGGAGCAGAATCGC 60.964 66.667 0.00 0.00 37.05 4.58
74 75 2.656651 CGCGGAGGAGCAGAATCG 60.657 66.667 0.00 0.00 36.85 3.34
75 76 2.964389 GCGCGGAGGAGCAGAATC 60.964 66.667 8.83 0.00 38.98 2.52
76 77 4.880537 CGCGCGGAGGAGCAGAAT 62.881 66.667 24.84 0.00 39.11 2.40
91 92 4.072088 CTTCGCCGTGTGGTTCGC 62.072 66.667 0.00 0.00 37.67 4.70
92 93 2.355363 TCTTCGCCGTGTGGTTCG 60.355 61.111 0.00 0.00 37.67 3.95
93 94 2.654912 CGTCTTCGCCGTGTGGTTC 61.655 63.158 0.00 0.00 37.67 3.62
94 95 2.660552 CGTCTTCGCCGTGTGGTT 60.661 61.111 0.00 0.00 37.67 3.67
124 125 4.821589 GAGACGCGGGCAAGGAGG 62.822 72.222 12.47 0.00 0.00 4.30
125 126 4.821589 GGAGACGCGGGCAAGGAG 62.822 72.222 12.47 0.00 0.00 3.69
144 145 4.099170 CAGAAGGCGCTGCAGCAC 62.099 66.667 36.03 27.84 42.21 4.40
150 151 2.793160 TTCTGAGGCAGAAGGCGCTG 62.793 60.000 7.64 0.00 44.27 5.18
151 152 2.587247 TTCTGAGGCAGAAGGCGCT 61.587 57.895 7.64 0.00 44.27 5.92
152 153 2.046892 TTCTGAGGCAGAAGGCGC 60.047 61.111 0.00 0.00 44.27 6.53
157 158 4.630644 AGAGATTTGTTCTGAGGCAGAA 57.369 40.909 5.81 5.81 46.50 3.02
158 159 4.573900 GAAGAGATTTGTTCTGAGGCAGA 58.426 43.478 0.00 0.00 38.87 4.26
159 160 3.370366 CGAAGAGATTTGTTCTGAGGCAG 59.630 47.826 0.00 0.00 33.74 4.85
160 161 3.329386 CGAAGAGATTTGTTCTGAGGCA 58.671 45.455 0.00 0.00 33.74 4.75
161 162 2.095053 GCGAAGAGATTTGTTCTGAGGC 59.905 50.000 0.00 0.00 33.74 4.70
162 163 3.124297 GTGCGAAGAGATTTGTTCTGAGG 59.876 47.826 0.00 0.00 33.74 3.86
163 164 3.181536 CGTGCGAAGAGATTTGTTCTGAG 60.182 47.826 0.00 0.00 33.74 3.35
164 165 2.731451 CGTGCGAAGAGATTTGTTCTGA 59.269 45.455 0.00 0.00 33.74 3.27
165 166 2.731451 TCGTGCGAAGAGATTTGTTCTG 59.269 45.455 0.00 0.00 33.74 3.02
166 167 2.731976 GTCGTGCGAAGAGATTTGTTCT 59.268 45.455 0.00 0.00 37.41 3.01
167 168 2.475111 TGTCGTGCGAAGAGATTTGTTC 59.525 45.455 0.00 0.00 0.00 3.18
168 169 2.221055 GTGTCGTGCGAAGAGATTTGTT 59.779 45.455 0.00 0.00 0.00 2.83
169 170 1.792949 GTGTCGTGCGAAGAGATTTGT 59.207 47.619 0.00 0.00 0.00 2.83
170 171 1.126846 GGTGTCGTGCGAAGAGATTTG 59.873 52.381 0.00 0.00 0.00 2.32
171 172 1.270094 TGGTGTCGTGCGAAGAGATTT 60.270 47.619 0.00 0.00 0.00 2.17
172 173 0.317160 TGGTGTCGTGCGAAGAGATT 59.683 50.000 0.00 0.00 0.00 2.40
173 174 0.388649 GTGGTGTCGTGCGAAGAGAT 60.389 55.000 0.00 0.00 0.00 2.75
174 175 1.007734 GTGGTGTCGTGCGAAGAGA 60.008 57.895 0.00 0.00 0.00 3.10
175 176 2.365068 CGTGGTGTCGTGCGAAGAG 61.365 63.158 0.00 0.00 0.00 2.85
176 177 2.354188 CGTGGTGTCGTGCGAAGA 60.354 61.111 0.00 0.00 0.00 2.87
177 178 2.354188 TCGTGGTGTCGTGCGAAG 60.354 61.111 0.00 0.00 0.00 3.79
178 179 2.656007 GTCGTGGTGTCGTGCGAA 60.656 61.111 0.00 0.00 35.08 4.70
179 180 4.634133 GGTCGTGGTGTCGTGCGA 62.634 66.667 0.00 0.00 0.00 5.10
180 181 4.934942 TGGTCGTGGTGTCGTGCG 62.935 66.667 0.00 0.00 0.00 5.34
181 182 2.765250 ATCTGGTCGTGGTGTCGTGC 62.765 60.000 0.00 0.00 0.00 5.34
182 183 1.008875 CATCTGGTCGTGGTGTCGTG 61.009 60.000 0.00 0.00 0.00 4.35
183 184 1.289066 CATCTGGTCGTGGTGTCGT 59.711 57.895 0.00 0.00 0.00 4.34
184 185 2.094659 GCATCTGGTCGTGGTGTCG 61.095 63.158 0.00 0.00 0.00 4.35
185 186 1.741770 GGCATCTGGTCGTGGTGTC 60.742 63.158 0.00 0.00 0.00 3.67
186 187 2.347490 GGCATCTGGTCGTGGTGT 59.653 61.111 0.00 0.00 0.00 4.16
187 188 2.034879 GTGGCATCTGGTCGTGGTG 61.035 63.158 0.00 0.00 0.00 4.17
188 189 2.347490 GTGGCATCTGGTCGTGGT 59.653 61.111 0.00 0.00 0.00 4.16
189 190 2.436646 GGTGGCATCTGGTCGTGG 60.437 66.667 0.00 0.00 0.00 4.94
190 191 1.742880 CAGGTGGCATCTGGTCGTG 60.743 63.158 20.19 0.00 0.00 4.35
191 192 2.665000 CAGGTGGCATCTGGTCGT 59.335 61.111 20.19 0.00 0.00 4.34
192 193 2.124983 CCAGGTGGCATCTGGTCG 60.125 66.667 34.06 12.93 44.97 4.79
223 224 1.137404 CTTACAATGGTGGCGCTGC 59.863 57.895 7.64 0.00 0.00 5.25
224 225 0.729116 CTCTTACAATGGTGGCGCTG 59.271 55.000 7.64 0.00 0.00 5.18
225 226 0.613260 TCTCTTACAATGGTGGCGCT 59.387 50.000 7.64 0.00 0.00 5.92
226 227 1.668419 ATCTCTTACAATGGTGGCGC 58.332 50.000 0.00 0.00 0.00 6.53
227 228 4.693283 TCTAATCTCTTACAATGGTGGCG 58.307 43.478 0.00 0.00 0.00 5.69
228 229 7.391148 TTTTCTAATCTCTTACAATGGTGGC 57.609 36.000 0.00 0.00 0.00 5.01
229 230 7.121168 TGCTTTTCTAATCTCTTACAATGGTGG 59.879 37.037 0.00 0.00 0.00 4.61
230 231 8.044060 TGCTTTTCTAATCTCTTACAATGGTG 57.956 34.615 0.00 0.00 0.00 4.17
231 232 8.635765 TTGCTTTTCTAATCTCTTACAATGGT 57.364 30.769 0.00 0.00 0.00 3.55
242 243 7.319142 GCAGAGAGATTTGCTTTTCTAATCT 57.681 36.000 0.00 0.00 45.46 2.40
274 275 2.915137 TTTGCTTTCCCGTGCCCC 60.915 61.111 0.00 0.00 0.00 5.80
275 276 2.650778 CTTTGCTTTCCCGTGCCC 59.349 61.111 0.00 0.00 0.00 5.36
276 277 2.049156 GCTTTGCTTTCCCGTGCC 60.049 61.111 0.00 0.00 0.00 5.01
277 278 1.661509 GTGCTTTGCTTTCCCGTGC 60.662 57.895 0.00 0.00 0.00 5.34
278 279 0.318107 CTGTGCTTTGCTTTCCCGTG 60.318 55.000 0.00 0.00 0.00 4.94
279 280 0.465460 TCTGTGCTTTGCTTTCCCGT 60.465 50.000 0.00 0.00 0.00 5.28
280 281 0.040067 GTCTGTGCTTTGCTTTCCCG 60.040 55.000 0.00 0.00 0.00 5.14
281 282 0.315251 GGTCTGTGCTTTGCTTTCCC 59.685 55.000 0.00 0.00 0.00 3.97
282 283 0.040067 CGGTCTGTGCTTTGCTTTCC 60.040 55.000 0.00 0.00 0.00 3.13
283 284 0.040067 CCGGTCTGTGCTTTGCTTTC 60.040 55.000 0.00 0.00 0.00 2.62
284 285 0.751643 ACCGGTCTGTGCTTTGCTTT 60.752 50.000 0.00 0.00 0.00 3.51
285 286 1.152963 ACCGGTCTGTGCTTTGCTT 60.153 52.632 0.00 0.00 0.00 3.91
286 287 1.893808 CACCGGTCTGTGCTTTGCT 60.894 57.895 2.59 0.00 0.00 3.91
287 288 2.639286 CACCGGTCTGTGCTTTGC 59.361 61.111 2.59 0.00 0.00 3.68
288 289 0.250124 TACCACCGGTCTGTGCTTTG 60.250 55.000 2.59 0.00 37.09 2.77
289 290 0.250166 GTACCACCGGTCTGTGCTTT 60.250 55.000 2.59 0.00 37.09 3.51
290 291 1.370064 GTACCACCGGTCTGTGCTT 59.630 57.895 2.59 0.00 37.09 3.91
291 292 2.927580 CGTACCACCGGTCTGTGCT 61.928 63.158 2.59 0.00 37.09 4.40
292 293 2.431942 CGTACCACCGGTCTGTGC 60.432 66.667 2.59 8.05 37.09 4.57
293 294 2.260434 CCGTACCACCGGTCTGTG 59.740 66.667 2.59 0.00 43.07 3.66
305 306 2.424705 TTCTGGTGGTGCGTCCGTAC 62.425 60.000 0.00 0.00 39.52 3.67
306 307 1.746322 TTTCTGGTGGTGCGTCCGTA 61.746 55.000 0.00 0.00 39.52 4.02
307 308 2.596553 TTTTCTGGTGGTGCGTCCGT 62.597 55.000 0.00 0.00 39.52 4.69
308 309 1.890041 TTTTCTGGTGGTGCGTCCG 60.890 57.895 0.00 0.00 39.52 4.79
309 310 0.818040 AGTTTTCTGGTGGTGCGTCC 60.818 55.000 0.00 0.00 0.00 4.79
310 311 0.307760 CAGTTTTCTGGTGGTGCGTC 59.692 55.000 0.00 0.00 43.61 5.19
311 312 2.404083 CAGTTTTCTGGTGGTGCGT 58.596 52.632 0.00 0.00 43.61 5.24
321 322 1.152963 AGTGGCACGGCAGTTTTCT 60.153 52.632 12.71 0.00 0.00 2.52
322 323 1.282875 GAGTGGCACGGCAGTTTTC 59.717 57.895 12.71 0.00 0.00 2.29
323 324 2.193536 GGAGTGGCACGGCAGTTTT 61.194 57.895 12.71 0.00 0.00 2.43
324 325 2.594592 GGAGTGGCACGGCAGTTT 60.595 61.111 12.71 0.00 0.00 2.66
325 326 3.872603 TGGAGTGGCACGGCAGTT 61.873 61.111 12.71 0.00 0.00 3.16
326 327 4.626081 GTGGAGTGGCACGGCAGT 62.626 66.667 12.71 0.00 0.00 4.40
327 328 4.320456 AGTGGAGTGGCACGGCAG 62.320 66.667 12.71 0.00 0.00 4.85
328 329 4.314440 GAGTGGAGTGGCACGGCA 62.314 66.667 12.71 0.00 0.00 5.69
330 331 4.742201 CGGAGTGGAGTGGCACGG 62.742 72.222 12.71 0.00 0.00 4.94
332 333 3.941657 GAGCGGAGTGGAGTGGCAC 62.942 68.421 10.29 10.29 0.00 5.01
333 334 3.695606 GAGCGGAGTGGAGTGGCA 61.696 66.667 0.00 0.00 0.00 4.92
334 335 4.459089 GGAGCGGAGTGGAGTGGC 62.459 72.222 0.00 0.00 0.00 5.01
335 336 4.135153 CGGAGCGGAGTGGAGTGG 62.135 72.222 0.00 0.00 0.00 4.00
360 361 4.676586 CGGAAAACGGCGGTGTGC 62.677 66.667 13.24 3.42 45.38 4.57
361 362 4.676586 GCGGAAAACGGCGGTGTG 62.677 66.667 13.24 0.00 44.51 3.82
368 369 2.482333 TTGTGTGGGCGGAAAACGG 61.482 57.895 0.00 0.00 44.51 4.44
370 371 0.526739 GTGTTGTGTGGGCGGAAAAC 60.527 55.000 0.00 0.00 0.00 2.43
371 372 0.965866 TGTGTTGTGTGGGCGGAAAA 60.966 50.000 0.00 0.00 0.00 2.29
372 373 0.965866 TTGTGTTGTGTGGGCGGAAA 60.966 50.000 0.00 0.00 0.00 3.13
373 374 1.378646 TTGTGTTGTGTGGGCGGAA 60.379 52.632 0.00 0.00 0.00 4.30
374 375 1.821759 CTTGTGTTGTGTGGGCGGA 60.822 57.895 0.00 0.00 0.00 5.54
375 376 2.721231 CTTGTGTTGTGTGGGCGG 59.279 61.111 0.00 0.00 0.00 6.13
376 377 2.721231 CCTTGTGTTGTGTGGGCG 59.279 61.111 0.00 0.00 0.00 6.13
377 378 2.417097 GCCTTGTGTTGTGTGGGC 59.583 61.111 0.00 0.00 0.00 5.36
378 379 1.737355 CTGGCCTTGTGTTGTGTGGG 61.737 60.000 3.32 0.00 0.00 4.61
379 380 1.735360 CTGGCCTTGTGTTGTGTGG 59.265 57.895 3.32 0.00 0.00 4.17
380 381 1.066257 GCTGGCCTTGTGTTGTGTG 59.934 57.895 3.32 0.00 0.00 3.82
381 382 2.127232 GGCTGGCCTTGTGTTGTGT 61.127 57.895 3.32 0.00 0.00 3.72
382 383 2.079020 CTGGCTGGCCTTGTGTTGTG 62.079 60.000 13.05 0.00 36.94 3.33
383 384 1.829533 CTGGCTGGCCTTGTGTTGT 60.830 57.895 13.05 0.00 36.94 3.32
384 385 3.045142 CTGGCTGGCCTTGTGTTG 58.955 61.111 13.05 0.00 36.94 3.33
385 386 2.914097 GCTGGCTGGCCTTGTGTT 60.914 61.111 13.05 0.00 36.94 3.32
403 404 3.805385 CTTTGTGTGTGGGCGCGTG 62.805 63.158 8.43 0.00 0.00 5.34
404 405 2.926901 TACTTTGTGTGTGGGCGCGT 62.927 55.000 8.43 0.00 0.00 6.01
405 406 1.573829 ATACTTTGTGTGTGGGCGCG 61.574 55.000 0.00 0.00 0.00 6.86
406 407 1.396996 CTATACTTTGTGTGTGGGCGC 59.603 52.381 0.00 0.00 0.00 6.53
407 408 2.967362 TCTATACTTTGTGTGTGGGCG 58.033 47.619 0.00 0.00 0.00 6.13
408 409 4.572389 CAGATCTATACTTTGTGTGTGGGC 59.428 45.833 0.00 0.00 0.00 5.36
409 410 4.572389 GCAGATCTATACTTTGTGTGTGGG 59.428 45.833 0.00 0.00 0.00 4.61
410 411 4.572389 GGCAGATCTATACTTTGTGTGTGG 59.428 45.833 0.00 0.00 0.00 4.17
411 412 4.268644 CGGCAGATCTATACTTTGTGTGTG 59.731 45.833 0.00 0.00 0.00 3.82
412 413 4.159693 TCGGCAGATCTATACTTTGTGTGT 59.840 41.667 0.00 0.00 0.00 3.72
413 414 4.504461 GTCGGCAGATCTATACTTTGTGTG 59.496 45.833 0.00 0.00 0.00 3.82
414 415 4.441634 GGTCGGCAGATCTATACTTTGTGT 60.442 45.833 0.00 0.00 0.00 3.72
415 416 4.051922 GGTCGGCAGATCTATACTTTGTG 58.948 47.826 0.00 0.00 0.00 3.33
416 417 3.243434 CGGTCGGCAGATCTATACTTTGT 60.243 47.826 0.00 0.00 0.00 2.83
417 418 3.004419 TCGGTCGGCAGATCTATACTTTG 59.996 47.826 0.00 0.00 0.00 2.77
418 419 3.220110 TCGGTCGGCAGATCTATACTTT 58.780 45.455 0.00 0.00 0.00 2.66
419 420 2.814919 CTCGGTCGGCAGATCTATACTT 59.185 50.000 0.00 0.00 0.00 2.24
420 421 2.428491 CTCGGTCGGCAGATCTATACT 58.572 52.381 0.00 0.00 0.00 2.12
421 422 1.135632 GCTCGGTCGGCAGATCTATAC 60.136 57.143 0.00 0.00 0.00 1.47
422 423 1.166129 GCTCGGTCGGCAGATCTATA 58.834 55.000 0.00 0.00 0.00 1.31
423 424 1.857318 CGCTCGGTCGGCAGATCTAT 61.857 60.000 0.00 0.00 0.00 1.98
424 425 2.543802 CGCTCGGTCGGCAGATCTA 61.544 63.158 0.00 0.00 0.00 1.98
425 426 3.893763 CGCTCGGTCGGCAGATCT 61.894 66.667 0.00 0.00 0.00 2.75
456 457 2.592001 TCTCGATCGGGAGCGGAG 60.592 66.667 15.15 2.13 41.05 4.63
457 458 2.900838 GTCTCGATCGGGAGCGGA 60.901 66.667 20.17 0.00 41.05 5.54
458 459 4.315122 CGTCTCGATCGGGAGCGG 62.315 72.222 20.17 7.10 41.05 5.52
459 460 4.315122 CCGTCTCGATCGGGAGCG 62.315 72.222 20.17 22.60 43.68 5.03
464 465 4.570663 GTGGCCCGTCTCGATCGG 62.571 72.222 16.41 18.25 46.49 4.18
465 466 3.822192 TGTGGCCCGTCTCGATCG 61.822 66.667 9.36 9.36 0.00 3.69
466 467 2.202756 GTGTGGCCCGTCTCGATC 60.203 66.667 0.00 0.00 0.00 3.69
467 468 4.129737 CGTGTGGCCCGTCTCGAT 62.130 66.667 0.00 0.00 0.00 3.59
495 496 4.814294 CACCTACTCCGGCGGTGC 62.814 72.222 27.32 0.00 41.39 5.01
501 502 3.718210 GAAGCCGCACCTACTCCGG 62.718 68.421 0.00 0.00 44.58 5.14
502 503 2.202756 GAAGCCGCACCTACTCCG 60.203 66.667 0.00 0.00 0.00 4.63
503 504 0.107654 AATGAAGCCGCACCTACTCC 60.108 55.000 0.00 0.00 0.00 3.85
504 505 1.291132 GAATGAAGCCGCACCTACTC 58.709 55.000 0.00 0.00 0.00 2.59
505 506 0.107654 GGAATGAAGCCGCACCTACT 60.108 55.000 0.00 0.00 0.00 2.57
506 507 0.392461 TGGAATGAAGCCGCACCTAC 60.392 55.000 0.00 0.00 0.00 3.18
507 508 0.546122 ATGGAATGAAGCCGCACCTA 59.454 50.000 0.00 0.00 0.00 3.08
508 509 0.749454 GATGGAATGAAGCCGCACCT 60.749 55.000 0.00 0.00 0.00 4.00
509 510 1.728490 GGATGGAATGAAGCCGCACC 61.728 60.000 0.00 0.00 0.00 5.01
510 511 1.728490 GGGATGGAATGAAGCCGCAC 61.728 60.000 0.00 0.00 0.00 5.34
511 512 1.453745 GGGATGGAATGAAGCCGCA 60.454 57.895 0.00 0.00 0.00 5.69
512 513 0.825010 ATGGGATGGAATGAAGCCGC 60.825 55.000 0.00 0.00 0.00 6.53
513 514 1.242076 GATGGGATGGAATGAAGCCG 58.758 55.000 0.00 0.00 0.00 5.52
514 515 2.369983 TGATGGGATGGAATGAAGCC 57.630 50.000 0.00 0.00 0.00 4.35
515 516 3.493334 TGATGATGGGATGGAATGAAGC 58.507 45.455 0.00 0.00 0.00 3.86
516 517 4.705507 GGATGATGATGGGATGGAATGAAG 59.294 45.833 0.00 0.00 0.00 3.02
517 518 4.509663 GGGATGATGATGGGATGGAATGAA 60.510 45.833 0.00 0.00 0.00 2.57
518 519 3.010920 GGGATGATGATGGGATGGAATGA 59.989 47.826 0.00 0.00 0.00 2.57
519 520 3.362706 GGGATGATGATGGGATGGAATG 58.637 50.000 0.00 0.00 0.00 2.67
520 521 2.025605 CGGGATGATGATGGGATGGAAT 60.026 50.000 0.00 0.00 0.00 3.01
521 522 1.352017 CGGGATGATGATGGGATGGAA 59.648 52.381 0.00 0.00 0.00 3.53
522 523 0.986527 CGGGATGATGATGGGATGGA 59.013 55.000 0.00 0.00 0.00 3.41
523 524 0.694771 ACGGGATGATGATGGGATGG 59.305 55.000 0.00 0.00 0.00 3.51
524 525 1.339438 GGACGGGATGATGATGGGATG 60.339 57.143 0.00 0.00 0.00 3.51
525 526 0.987294 GGACGGGATGATGATGGGAT 59.013 55.000 0.00 0.00 0.00 3.85
526 527 1.471829 CGGACGGGATGATGATGGGA 61.472 60.000 0.00 0.00 0.00 4.37
527 528 1.004560 CGGACGGGATGATGATGGG 60.005 63.158 0.00 0.00 0.00 4.00
528 529 0.037882 CTCGGACGGGATGATGATGG 60.038 60.000 0.00 0.00 0.00 3.51
529 530 0.037882 CCTCGGACGGGATGATGATG 60.038 60.000 0.00 0.00 0.00 3.07
530 531 1.821061 GCCTCGGACGGGATGATGAT 61.821 60.000 0.00 0.00 0.00 2.45
531 532 2.498941 GCCTCGGACGGGATGATGA 61.499 63.158 0.00 0.00 0.00 2.92
532 533 2.029666 GCCTCGGACGGGATGATG 59.970 66.667 0.00 0.00 0.00 3.07
533 534 3.606662 CGCCTCGGACGGGATGAT 61.607 66.667 0.00 0.00 0.00 2.45
547 548 4.101448 ATGGAGTGAGGTGGCGCC 62.101 66.667 22.73 22.73 37.58 6.53
548 549 2.512515 GATGGAGTGAGGTGGCGC 60.513 66.667 0.00 0.00 0.00 6.53
549 550 1.142748 GAGATGGAGTGAGGTGGCG 59.857 63.158 0.00 0.00 0.00 5.69
550 551 0.908198 AAGAGATGGAGTGAGGTGGC 59.092 55.000 0.00 0.00 0.00 5.01
551 552 2.465813 AGAAGAGATGGAGTGAGGTGG 58.534 52.381 0.00 0.00 0.00 4.61
552 553 3.859443 CAAGAAGAGATGGAGTGAGGTG 58.141 50.000 0.00 0.00 0.00 4.00
553 554 2.235898 GCAAGAAGAGATGGAGTGAGGT 59.764 50.000 0.00 0.00 0.00 3.85
554 555 2.235650 TGCAAGAAGAGATGGAGTGAGG 59.764 50.000 0.00 0.00 0.00 3.86
555 556 3.260740 GTGCAAGAAGAGATGGAGTGAG 58.739 50.000 0.00 0.00 0.00 3.51
556 557 2.353109 CGTGCAAGAAGAGATGGAGTGA 60.353 50.000 0.00 0.00 0.00 3.41
557 558 1.998315 CGTGCAAGAAGAGATGGAGTG 59.002 52.381 0.00 0.00 0.00 3.51
558 559 1.674221 GCGTGCAAGAAGAGATGGAGT 60.674 52.381 2.99 0.00 0.00 3.85
559 560 1.005340 GCGTGCAAGAAGAGATGGAG 58.995 55.000 2.99 0.00 0.00 3.86
560 561 0.391661 GGCGTGCAAGAAGAGATGGA 60.392 55.000 2.99 0.00 0.00 3.41
561 562 1.699656 CGGCGTGCAAGAAGAGATGG 61.700 60.000 2.99 0.00 0.00 3.51
562 563 1.699656 CCGGCGTGCAAGAAGAGATG 61.700 60.000 6.01 0.00 0.00 2.90
563 564 1.448540 CCGGCGTGCAAGAAGAGAT 60.449 57.895 6.01 0.00 0.00 2.75
564 565 2.048222 CCGGCGTGCAAGAAGAGA 60.048 61.111 6.01 0.00 0.00 3.10
565 566 3.793144 GCCGGCGTGCAAGAAGAG 61.793 66.667 12.58 0.00 0.00 2.85
595 596 3.839353 GATGAGATGGGCCGGGCTG 62.839 68.421 28.80 0.00 0.00 4.85
596 597 3.564218 GATGAGATGGGCCGGGCT 61.564 66.667 28.80 9.11 0.00 5.19
597 598 4.650377 GGATGAGATGGGCCGGGC 62.650 72.222 22.00 22.00 0.00 6.13
598 599 3.958860 GGGATGAGATGGGCCGGG 61.959 72.222 2.18 0.00 0.00 5.73
599 600 2.475371 GATGGGATGAGATGGGCCGG 62.475 65.000 0.00 0.00 0.00 6.13
600 601 1.002868 GATGGGATGAGATGGGCCG 60.003 63.158 0.00 0.00 0.00 6.13
601 602 1.381851 GGATGGGATGAGATGGGCC 59.618 63.158 0.00 0.00 0.00 5.80
602 603 1.381851 GGGATGGGATGAGATGGGC 59.618 63.158 0.00 0.00 0.00 5.36
603 604 1.504275 GGGGGATGGGATGAGATGGG 61.504 65.000 0.00 0.00 0.00 4.00
604 605 0.773305 TGGGGGATGGGATGAGATGG 60.773 60.000 0.00 0.00 0.00 3.51
605 606 1.284198 GATGGGGGATGGGATGAGATG 59.716 57.143 0.00 0.00 0.00 2.90
606 607 1.678735 GATGGGGGATGGGATGAGAT 58.321 55.000 0.00 0.00 0.00 2.75
607 608 0.837691 CGATGGGGGATGGGATGAGA 60.838 60.000 0.00 0.00 0.00 3.27
608 609 1.681666 CGATGGGGGATGGGATGAG 59.318 63.158 0.00 0.00 0.00 2.90
609 610 1.847506 CCGATGGGGGATGGGATGA 60.848 63.158 0.00 0.00 31.47 2.92
610 611 2.759114 CCGATGGGGGATGGGATG 59.241 66.667 0.00 0.00 31.47 3.51
611 612 3.260100 GCCGATGGGGGATGGGAT 61.260 66.667 0.00 0.00 31.47 3.85
678 679 2.439338 TGGTGTGGTGTGGTGTGC 60.439 61.111 0.00 0.00 0.00 4.57
689 690 2.908073 GCAAGGGAAGCGTGGTGTG 61.908 63.158 0.00 0.00 0.00 3.82
690 691 2.594592 GCAAGGGAAGCGTGGTGT 60.595 61.111 0.00 0.00 0.00 4.16
691 692 3.365265 GGCAAGGGAAGCGTGGTG 61.365 66.667 0.00 0.00 0.00 4.17
692 693 3.133365 AAGGCAAGGGAAGCGTGGT 62.133 57.895 0.00 0.00 0.00 4.16
693 694 2.282462 AAGGCAAGGGAAGCGTGG 60.282 61.111 0.00 0.00 0.00 4.94
1138 1139 2.046892 GCACACAGATCCTGCGGT 60.047 61.111 0.00 0.00 34.37 5.68
1139 1140 2.046988 TGCACACAGATCCTGCGG 60.047 61.111 0.00 0.00 34.37 5.69
1140 1141 2.393768 GGTGCACACAGATCCTGCG 61.394 63.158 20.43 0.00 34.37 5.18
1224 1234 3.011517 GCCAGCTTGGAGGAGGGA 61.012 66.667 6.40 0.00 40.96 4.20
1314 1330 4.862823 GGGGTCGGAGGAGGAGGG 62.863 77.778 0.00 0.00 0.00 4.30
1317 1333 3.607299 TTGGGGGTCGGAGGAGGA 61.607 66.667 0.00 0.00 0.00 3.71
1318 1334 3.400054 GTTGGGGGTCGGAGGAGG 61.400 72.222 0.00 0.00 0.00 4.30
1319 1335 3.400054 GGTTGGGGGTCGGAGGAG 61.400 72.222 0.00 0.00 0.00 3.69
1474 1497 4.760047 GTCCATGACGCAGCCGGT 62.760 66.667 1.90 0.00 39.22 5.28
1481 1504 1.226717 GAGTCGAGGTCCATGACGC 60.227 63.158 0.00 5.05 37.69 5.19
1721 1758 5.955959 TGTACAGCAAATAGAGTAGGGAAGA 59.044 40.000 0.00 0.00 0.00 2.87
1725 1762 5.352284 CACTGTACAGCAAATAGAGTAGGG 58.648 45.833 22.90 0.00 0.00 3.53
1730 1767 4.248859 ACTGCACTGTACAGCAAATAGAG 58.751 43.478 22.90 11.00 40.73 2.43
1731 1768 4.271696 ACTGCACTGTACAGCAAATAGA 57.728 40.909 22.90 0.00 40.73 1.98
1764 1801 2.978010 CACACGGCCACCAAGGTC 60.978 66.667 2.24 0.00 40.61 3.85
1768 1805 2.830827 CAACCACACGGCCACCAA 60.831 61.111 2.24 0.00 34.57 3.67
1878 1915 6.707440 AGAGTAGTTAGACATGACCATCAG 57.293 41.667 0.00 0.00 0.00 2.90
1917 1954 8.483307 AAAATCCAAAAACATGTGCATCTATC 57.517 30.769 0.00 0.00 0.00 2.08
1944 1982 2.322081 CGCCACCGTTACAACAGGG 61.322 63.158 7.53 0.00 0.00 4.45
1996 2042 3.902261 ACCGCGTATGACGTAATATCA 57.098 42.857 4.92 0.00 44.73 2.15
2079 2125 5.407502 GCACCATAATCCCAAAAACTGTAC 58.592 41.667 0.00 0.00 0.00 2.90
2129 2177 3.821033 AGGTGGCACTTGTATTTCTCAAC 59.179 43.478 18.45 0.00 0.00 3.18
2160 2250 9.057089 GCAGCCTAACTAGTACAAATCATAAAT 57.943 33.333 0.00 0.00 0.00 1.40
2161 2251 8.265055 AGCAGCCTAACTAGTACAAATCATAAA 58.735 33.333 0.00 0.00 0.00 1.40
2162 2252 7.792032 AGCAGCCTAACTAGTACAAATCATAA 58.208 34.615 0.00 0.00 0.00 1.90
2163 2253 7.361457 AGCAGCCTAACTAGTACAAATCATA 57.639 36.000 0.00 0.00 0.00 2.15
2164 2254 6.240549 AGCAGCCTAACTAGTACAAATCAT 57.759 37.500 0.00 0.00 0.00 2.45
2165 2255 5.677319 AGCAGCCTAACTAGTACAAATCA 57.323 39.130 0.00 0.00 0.00 2.57
2166 2256 7.466193 GTTAGCAGCCTAACTAGTACAAATC 57.534 40.000 0.00 0.00 46.36 2.17
2194 2284 2.690778 CCAGCTAACTTGCGCCCAC 61.691 63.158 4.18 0.00 38.13 4.61
2246 2339 0.814457 TGGATACATTGTTTGGCGGC 59.186 50.000 0.00 0.00 46.17 6.53
2379 2473 9.429109 TGATTAGGTAGACAATGTTCCATACTA 57.571 33.333 0.00 0.00 0.00 1.82
2380 2474 8.319057 TGATTAGGTAGACAATGTTCCATACT 57.681 34.615 0.00 0.00 0.00 2.12
2381 2475 7.171678 GCTGATTAGGTAGACAATGTTCCATAC 59.828 40.741 0.00 0.00 0.00 2.39
2382 2476 7.217200 GCTGATTAGGTAGACAATGTTCCATA 58.783 38.462 0.00 0.00 0.00 2.74
2727 2821 3.009723 CAGGCCATACTGTGTTACAAGG 58.990 50.000 5.01 0.00 33.81 3.61
2771 2865 7.457561 TGCATGCCTAATCTGTAATTGGTATA 58.542 34.615 16.68 0.00 0.00 1.47
2791 2885 1.147473 TGTCGCTGTACAACTGCATG 58.853 50.000 0.00 0.00 42.26 4.06
2845 2939 6.903883 AAGAAGTACACTACGGCAATATTG 57.096 37.500 11.27 11.27 0.00 1.90
2852 2946 6.775939 AAAACTTAAGAAGTACACTACGGC 57.224 37.500 10.09 0.00 41.91 5.68
2879 2973 6.379703 TGTCAGAAAGAAGACCCATTCAAAAA 59.620 34.615 0.00 0.00 33.89 1.94
2880 2974 5.890985 TGTCAGAAAGAAGACCCATTCAAAA 59.109 36.000 0.00 0.00 33.89 2.44
2881 2975 5.445069 TGTCAGAAAGAAGACCCATTCAAA 58.555 37.500 0.00 0.00 33.89 2.69
2882 2976 5.047566 TGTCAGAAAGAAGACCCATTCAA 57.952 39.130 0.00 0.00 33.89 2.69
2883 2977 4.705110 TGTCAGAAAGAAGACCCATTCA 57.295 40.909 0.00 0.00 33.89 2.57
2884 2978 5.248640 TCATGTCAGAAAGAAGACCCATTC 58.751 41.667 0.00 0.00 33.89 2.67
3267 3361 8.443953 ACAAATCCTTTTGATATACTGAGCTC 57.556 34.615 6.82 6.82 44.11 4.09
3294 3388 6.831868 GGTATAGGCTCCTTTTGTTTAATCCA 59.168 38.462 0.00 0.00 0.00 3.41
3406 3500 7.341445 TCATGGGTTTATTATTGTGCCTAAC 57.659 36.000 0.00 0.00 0.00 2.34
3416 3510 9.699410 TCACTCTTTCAATCATGGGTTTATTAT 57.301 29.630 0.00 0.00 0.00 1.28
3417 3511 9.177608 CTCACTCTTTCAATCATGGGTTTATTA 57.822 33.333 0.00 0.00 0.00 0.98
3435 3529 2.877168 CTCACTTTGCTTGCTCACTCTT 59.123 45.455 0.00 0.00 0.00 2.85
3528 3622 3.492309 GCATCCTGATGAGATCGTCTTGT 60.492 47.826 11.23 0.00 41.20 3.16
3564 3658 0.727398 GCTCGTACCTGAACATTGGC 59.273 55.000 0.00 0.00 0.00 4.52
3585 3679 2.743718 CCCGCTGATATCCGGCTT 59.256 61.111 13.26 0.00 44.98 4.35
3615 3709 1.374947 CACTTTCCCTTGCCCGAGA 59.625 57.895 0.00 0.00 0.00 4.04
3642 3736 0.529555 GTTGGCTCCTCAGATCGCTC 60.530 60.000 0.00 0.00 0.00 5.03
3702 3796 0.106268 TGGAGCACCTTTGAAGCCAA 60.106 50.000 0.71 0.00 37.04 4.52
3723 3817 4.925861 GCTCTCGCATCCAGCCCC 62.926 72.222 0.00 0.00 41.38 5.80
3903 3997 0.543410 TCCAAGGGCTCTACCGACAA 60.543 55.000 0.00 0.00 40.62 3.18
3918 4012 1.303074 CAGGCTTCTGCTGCTCCAA 60.303 57.895 0.00 0.00 39.59 3.53
3936 4030 0.861837 CGGACCAAGCAATATCTCGC 59.138 55.000 0.00 0.00 0.00 5.03
3937 4031 0.861837 GCGGACCAAGCAATATCTCG 59.138 55.000 0.00 0.00 34.19 4.04
4050 4148 0.606604 TACACTGGGAAGAACCGAGC 59.393 55.000 0.00 0.00 46.35 5.03
4054 4152 2.084546 GTGCATACACTGGGAAGAACC 58.915 52.381 0.00 0.00 43.85 3.62
4084 4182 3.490348 CTGACTCTGGGAATTGTGGTTT 58.510 45.455 0.00 0.00 0.00 3.27
4085 4183 2.815589 GCTGACTCTGGGAATTGTGGTT 60.816 50.000 0.00 0.00 0.00 3.67
4086 4184 1.271597 GCTGACTCTGGGAATTGTGGT 60.272 52.381 0.00 0.00 0.00 4.16
4087 4185 1.271543 TGCTGACTCTGGGAATTGTGG 60.272 52.381 0.00 0.00 0.00 4.17
4088 4186 2.189594 TGCTGACTCTGGGAATTGTG 57.810 50.000 0.00 0.00 0.00 3.33
4089 4187 2.957402 TTGCTGACTCTGGGAATTGT 57.043 45.000 0.00 0.00 0.00 2.71
4090 4188 4.774124 TCTATTGCTGACTCTGGGAATTG 58.226 43.478 0.00 0.00 0.00 2.32
4091 4189 5.441718 TTCTATTGCTGACTCTGGGAATT 57.558 39.130 0.00 0.00 0.00 2.17
4092 4190 5.643421 ATTCTATTGCTGACTCTGGGAAT 57.357 39.130 0.00 0.00 0.00 3.01
4093 4191 5.188434 CAATTCTATTGCTGACTCTGGGAA 58.812 41.667 0.00 0.00 0.00 3.97
4094 4192 4.225942 ACAATTCTATTGCTGACTCTGGGA 59.774 41.667 0.00 0.00 0.00 4.37
4095 4193 4.521146 ACAATTCTATTGCTGACTCTGGG 58.479 43.478 0.00 0.00 0.00 4.45
4096 4194 5.413833 ACAACAATTCTATTGCTGACTCTGG 59.586 40.000 9.14 0.00 0.00 3.86
4177 4275 7.121463 CCACTGGGATATGTATGTACTCTAGAC 59.879 44.444 0.00 0.00 35.59 2.59
4178 4276 7.175797 CCACTGGGATATGTATGTACTCTAGA 58.824 42.308 0.00 0.00 35.59 2.43
4179 4277 6.127591 GCCACTGGGATATGTATGTACTCTAG 60.128 46.154 0.00 0.00 35.59 2.43
4182 4280 4.283467 TGCCACTGGGATATGTATGTACTC 59.717 45.833 0.00 0.00 35.59 2.59
4200 4298 3.310501 GCAAATATGAGCCAAATTGCCAC 59.689 43.478 0.00 0.00 37.71 5.01
4238 4336 3.118038 TCCAGGAATAAGGCCATGTACAC 60.118 47.826 5.01 0.00 0.00 2.90
4240 4338 3.391296 TCTCCAGGAATAAGGCCATGTAC 59.609 47.826 5.01 0.00 0.00 2.90
4270 4368 6.494666 TGCCCTGCTTAATTACTACTGTAT 57.505 37.500 0.00 0.00 0.00 2.29
4312 4436 0.683973 ATATCAAGGAGAGCCTGCCG 59.316 55.000 0.00 0.00 46.28 5.69
4317 4446 5.743636 AGAAGATGATATCAAGGAGAGCC 57.256 43.478 9.99 0.00 0.00 4.70
4395 4538 3.248495 AGCATAGAGGATGATGATGCG 57.752 47.619 0.00 0.00 45.94 4.73
4662 4805 3.649277 CTGGTTCAGCCCCGACTCG 62.649 68.421 0.00 0.00 36.04 4.18
4668 4811 4.366684 CACCCCTGGTTCAGCCCC 62.367 72.222 0.00 0.00 31.02 5.80


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.