Multiple sequence alignment - TraesCS5B01G523200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G523200 chr5B 100.000 3631 0 0 1 3631 684450053 684446423 0.000000e+00 6706.0
1 TraesCS5B01G523200 chr5D 92.303 1533 88 17 1905 3418 542991649 542990128 0.000000e+00 2150.0
2 TraesCS5B01G523200 chr5D 89.370 809 44 24 730 1510 542992764 542991970 0.000000e+00 979.0
3 TraesCS5B01G523200 chr5D 89.170 277 23 7 1649 1920 542991942 542991668 4.490000e-89 339.0
4 TraesCS5B01G523200 chr5D 90.741 216 20 0 3416 3631 542988368 542988153 4.590000e-74 289.0
5 TraesCS5B01G523200 chr5D 88.400 250 15 8 1 241 542993028 542992784 4.590000e-74 289.0
6 TraesCS5B01G523200 chr5D 88.835 206 23 0 1009 1214 426014984 426015189 1.670000e-63 254.0
7 TraesCS5B01G523200 chr5D 84.232 241 36 2 3240 3479 243087058 243086819 2.180000e-57 233.0
8 TraesCS5B01G523200 chr4A 93.988 1314 64 6 2129 3439 626168107 626169408 0.000000e+00 1975.0
9 TraesCS5B01G523200 chr4A 93.110 537 25 9 1616 2145 626166359 626166890 0.000000e+00 776.0
10 TraesCS5B01G523200 chr4A 95.169 207 10 0 1008 1214 626164957 626165163 9.720000e-86 327.0
11 TraesCS5B01G523200 chr4A 91.810 232 17 2 1299 1530 626165161 626165390 4.520000e-84 322.0
12 TraesCS5B01G523200 chr4A 92.614 176 12 1 3457 3631 626169399 626169574 6.020000e-63 252.0
13 TraesCS5B01G523200 chr2D 82.885 520 70 14 1004 1513 340510885 340511395 1.990000e-122 449.0
14 TraesCS5B01G523200 chr2D 88.047 343 41 0 2284 2626 340512874 340513216 1.210000e-109 407.0
15 TraesCS5B01G523200 chr2D 81.323 514 68 20 1009 1510 340270384 340270881 3.400000e-105 392.0
16 TraesCS5B01G523200 chr2A 82.205 517 76 11 1004 1513 450997203 450996696 7.200000e-117 431.0
17 TraesCS5B01G523200 chr2A 82.012 517 65 20 1009 1513 451013626 451013126 7.250000e-112 414.0
18 TraesCS5B01G523200 chr2A 86.612 366 47 2 2262 2626 450995104 450994740 1.570000e-108 403.0
19 TraesCS5B01G523200 chr2A 87.963 216 23 3 1006 1220 556986394 556986607 6.020000e-63 252.0
20 TraesCS5B01G523200 chr2B 87.466 367 43 3 2262 2626 406280736 406281101 1.560000e-113 420.0
21 TraesCS5B01G523200 chr2B 81.783 516 62 23 1009 1510 406098767 406099264 1.570000e-108 403.0
22 TraesCS5B01G523200 chr2B 97.619 42 0 1 275 315 688373878 688373837 1.810000e-08 71.3
23 TraesCS5B01G523200 chr7B 83.047 407 49 16 232 622 44238109 44238511 5.770000e-93 351.0
24 TraesCS5B01G523200 chr7B 79.817 327 47 12 296 616 111326103 111326416 1.700000e-53 220.0
25 TraesCS5B01G523200 chr7B 97.674 43 0 1 275 316 701154939 701154897 5.030000e-09 73.1
26 TraesCS5B01G523200 chr3D 82.555 407 51 14 232 622 45667514 45667916 1.250000e-89 340.0
27 TraesCS5B01G523200 chr3D 76.596 376 57 20 241 600 338881714 338882074 1.040000e-40 178.0
28 TraesCS5B01G523200 chr6A 81.658 398 51 19 232 612 16377103 16377495 9.790000e-81 311.0
29 TraesCS5B01G523200 chr6A 79.580 333 50 14 296 620 609739594 609739916 4.720000e-54 222.0
30 TraesCS5B01G523200 chr3B 80.741 405 55 17 232 622 785200407 785200802 9.860000e-76 294.0
31 TraesCS5B01G523200 chr3B 86.864 236 30 1 3245 3479 703614774 703615009 2.780000e-66 263.0
32 TraesCS5B01G523200 chr3B 79.402 301 35 14 236 528 173556256 173556537 1.720000e-43 187.0
33 TraesCS5B01G523200 chr3B 76.923 299 49 18 239 528 59046833 59047120 6.280000e-33 152.0
34 TraesCS5B01G523200 chr4D 84.884 258 36 3 3214 3469 27369183 27369439 1.290000e-64 257.0
35 TraesCS5B01G523200 chr4D 83.083 266 40 3 3215 3479 414067620 414067881 1.690000e-58 237.0
36 TraesCS5B01G523200 chr1B 84.884 258 34 4 3215 3471 331095786 331096039 4.650000e-64 255.0
37 TraesCS5B01G523200 chr1B 78.325 406 48 21 234 622 154162883 154162501 3.650000e-55 226.0
38 TraesCS5B01G523200 chr1D 84.496 258 37 3 3215 3471 246955135 246954880 6.020000e-63 252.0
39 TraesCS5B01G523200 chr1D 97.436 39 0 1 275 312 122776368 122776330 8.420000e-07 65.8
40 TraesCS5B01G523200 chr4B 83.721 258 39 3 3214 3469 40026729 40026985 1.300000e-59 241.0
41 TraesCS5B01G523200 chr7D 79.420 345 52 17 275 608 48362754 48362418 3.650000e-55 226.0
42 TraesCS5B01G523200 chr7D 95.455 44 0 2 275 317 191552269 191552311 6.510000e-08 69.4
43 TraesCS5B01G523200 chr3A 80.970 268 37 7 274 528 128162933 128163199 2.210000e-47 200.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G523200 chr5B 684446423 684450053 3630 True 6706.0 6706 100.0000 1 3631 1 chr5B.!!$R1 3630
1 TraesCS5B01G523200 chr5D 542988153 542993028 4875 True 809.2 2150 89.9968 1 3631 5 chr5D.!!$R2 3630
2 TraesCS5B01G523200 chr4A 626164957 626169574 4617 False 730.4 1975 93.3382 1008 3631 5 chr4A.!!$F1 2623
3 TraesCS5B01G523200 chr2D 340510885 340513216 2331 False 428.0 449 85.4660 1004 2626 2 chr2D.!!$F2 1622
4 TraesCS5B01G523200 chr2A 450994740 450997203 2463 True 417.0 431 84.4085 1004 2626 2 chr2A.!!$R2 1622
5 TraesCS5B01G523200 chr2A 451013126 451013626 500 True 414.0 414 82.0120 1009 1513 1 chr2A.!!$R1 504

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
88 98 0.034059 CGATGGACTGGTCATAGGGC 59.966 60.0 3.10 0.0 0.00 5.19 F
89 99 0.034059 GATGGACTGGTCATAGGGCG 59.966 60.0 3.10 0.0 0.00 6.13 F
418 428 0.105408 ACCGGCACTCTAAAACGTGT 59.895 50.0 0.00 0.0 33.78 4.49 F
1350 1408 0.482446 TGGATCTGGCCACCAAGTTT 59.518 50.0 11.05 0.0 30.80 2.66 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1185 1222 2.231478 GAGAAGGATCTCGTTGGTGTGA 59.769 50.000 0.00 0.00 42.54 3.58 R
1254 1304 2.277373 GAGCGCACGTCCGTAGAG 60.277 66.667 11.47 0.00 0.00 2.43 R
2252 5408 0.601046 TGTCAGTGAAAGAGCCAGCG 60.601 55.000 0.00 0.00 0.00 5.18 R
2674 5830 0.110823 GGTTCGTGCACTGCTAAACG 60.111 55.000 16.19 4.37 37.38 3.60 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 39 5.163034 TGTTGGTCTTCTCCCTTCCAATTTA 60.163 40.000 0.00 0.00 39.74 1.40
84 94 7.776618 AGTTATTATCGATGGACTGGTCATA 57.223 36.000 8.54 0.00 0.00 2.15
87 97 1.704641 TCGATGGACTGGTCATAGGG 58.295 55.000 3.10 0.00 0.00 3.53
88 98 0.034059 CGATGGACTGGTCATAGGGC 59.966 60.000 3.10 0.00 0.00 5.19
89 99 0.034059 GATGGACTGGTCATAGGGCG 59.966 60.000 3.10 0.00 0.00 6.13
90 100 0.691078 ATGGACTGGTCATAGGGCGT 60.691 55.000 3.10 0.00 0.00 5.68
97 107 1.512996 GGTCATAGGGCGTCGATCGA 61.513 60.000 15.15 15.15 42.86 3.59
106 116 0.595053 GCGTCGATCGATGTCACCAT 60.595 55.000 31.77 0.00 42.86 3.55
113 123 1.820906 CGATGTCACCATGGCAGGG 60.821 63.158 18.06 18.06 34.38 4.45
120 130 4.108299 CCATGGCAGGGGCGTACA 62.108 66.667 11.07 0.00 42.47 2.90
133 143 1.080093 CGTACATGGTCACCGCAGT 60.080 57.895 0.00 0.00 0.00 4.40
148 158 5.810587 TCACCGCAGTTTATCTAATGAAGTC 59.189 40.000 0.00 0.00 0.00 3.01
178 188 1.742880 CTGTGTGCCGACATCCAGG 60.743 63.158 0.00 0.00 33.63 4.45
216 226 2.187946 CGATGAGGGAGGTGCCAC 59.812 66.667 0.00 0.00 38.95 5.01
218 228 2.607750 ATGAGGGAGGTGCCACGT 60.608 61.111 0.00 0.00 38.95 4.49
231 241 1.084370 GCCACGTGGAAAGATCTCCG 61.084 60.000 38.30 7.23 38.44 4.63
235 245 3.430374 CCACGTGGAAAGATCTCCGTATT 60.430 47.826 31.31 0.00 38.44 1.89
236 246 4.202080 CCACGTGGAAAGATCTCCGTATTA 60.202 45.833 31.31 0.00 38.44 0.98
240 250 7.011109 CACGTGGAAAGATCTCCGTATTATTTT 59.989 37.037 7.95 0.00 38.44 1.82
241 251 7.011109 ACGTGGAAAGATCTCCGTATTATTTTG 59.989 37.037 0.00 0.00 38.44 2.44
242 252 7.132863 GTGGAAAGATCTCCGTATTATTTTGC 58.867 38.462 0.00 0.00 38.44 3.68
243 253 7.012421 GTGGAAAGATCTCCGTATTATTTTGCT 59.988 37.037 0.00 0.00 38.44 3.91
244 254 7.226720 TGGAAAGATCTCCGTATTATTTTGCTC 59.773 37.037 0.00 0.00 38.44 4.26
245 255 7.308049 GGAAAGATCTCCGTATTATTTTGCTCC 60.308 40.741 0.00 0.00 0.00 4.70
246 256 5.552178 AGATCTCCGTATTATTTTGCTCCC 58.448 41.667 0.00 0.00 0.00 4.30
247 257 3.724374 TCTCCGTATTATTTTGCTCCCG 58.276 45.455 0.00 0.00 0.00 5.14
248 258 3.385433 TCTCCGTATTATTTTGCTCCCGA 59.615 43.478 0.00 0.00 0.00 5.14
249 259 3.724374 TCCGTATTATTTTGCTCCCGAG 58.276 45.455 0.00 0.00 0.00 4.63
259 269 4.623814 CTCCCGAGCTCAAATGCA 57.376 55.556 15.40 0.00 34.99 3.96
260 270 2.093216 CTCCCGAGCTCAAATGCAC 58.907 57.895 15.40 0.00 34.99 4.57
261 271 0.392193 CTCCCGAGCTCAAATGCACT 60.392 55.000 15.40 0.00 34.99 4.40
262 272 0.391661 TCCCGAGCTCAAATGCACTC 60.392 55.000 15.40 0.00 34.99 3.51
263 273 0.392193 CCCGAGCTCAAATGCACTCT 60.392 55.000 15.40 0.00 34.99 3.24
264 274 1.005340 CCGAGCTCAAATGCACTCTC 58.995 55.000 15.40 0.00 34.99 3.20
265 275 1.673923 CCGAGCTCAAATGCACTCTCA 60.674 52.381 15.40 0.00 34.99 3.27
266 276 2.277969 CGAGCTCAAATGCACTCTCAT 58.722 47.619 15.40 0.00 34.99 2.90
267 277 2.284684 CGAGCTCAAATGCACTCTCATC 59.715 50.000 15.40 0.00 34.99 2.92
268 278 3.268330 GAGCTCAAATGCACTCTCATCA 58.732 45.455 9.40 0.00 34.99 3.07
269 279 3.682696 AGCTCAAATGCACTCTCATCAA 58.317 40.909 0.00 0.00 34.99 2.57
270 280 3.439476 AGCTCAAATGCACTCTCATCAAC 59.561 43.478 0.00 0.00 34.99 3.18
271 281 3.189910 GCTCAAATGCACTCTCATCAACA 59.810 43.478 0.00 0.00 0.00 3.33
272 282 4.672024 GCTCAAATGCACTCTCATCAACAG 60.672 45.833 0.00 0.00 0.00 3.16
273 283 4.392047 TCAAATGCACTCTCATCAACAGT 58.608 39.130 0.00 0.00 0.00 3.55
274 284 5.550290 TCAAATGCACTCTCATCAACAGTA 58.450 37.500 0.00 0.00 0.00 2.74
275 285 5.997129 TCAAATGCACTCTCATCAACAGTAA 59.003 36.000 0.00 0.00 0.00 2.24
276 286 6.486320 TCAAATGCACTCTCATCAACAGTAAA 59.514 34.615 0.00 0.00 0.00 2.01
277 287 6.882610 AATGCACTCTCATCAACAGTAAAA 57.117 33.333 0.00 0.00 0.00 1.52
278 288 6.882610 ATGCACTCTCATCAACAGTAAAAA 57.117 33.333 0.00 0.00 0.00 1.94
342 352 9.983431 GTAAACTTTGACAAATGTTTTATACGC 57.017 29.630 22.17 10.55 41.39 4.42
343 353 8.865590 AAACTTTGACAAATGTTTTATACGCT 57.134 26.923 16.25 1.32 39.38 5.07
344 354 8.865590 AACTTTGACAAATGTTTTATACGCTT 57.134 26.923 0.05 0.00 31.52 4.68
345 355 8.280909 ACTTTGACAAATGTTTTATACGCTTG 57.719 30.769 0.05 0.00 0.00 4.01
346 356 6.683090 TTGACAAATGTTTTATACGCTTGC 57.317 33.333 0.00 0.00 0.00 4.01
347 357 5.763088 TGACAAATGTTTTATACGCTTGCA 58.237 33.333 0.00 0.00 0.00 4.08
348 358 5.627367 TGACAAATGTTTTATACGCTTGCAC 59.373 36.000 0.00 0.00 0.00 4.57
349 359 5.524284 ACAAATGTTTTATACGCTTGCACA 58.476 33.333 0.00 0.00 0.00 4.57
350 360 6.155827 ACAAATGTTTTATACGCTTGCACAT 58.844 32.000 0.00 0.00 0.00 3.21
351 361 6.644592 ACAAATGTTTTATACGCTTGCACATT 59.355 30.769 0.00 0.00 35.41 2.71
352 362 7.170658 ACAAATGTTTTATACGCTTGCACATTT 59.829 29.630 10.21 10.21 41.69 2.32
353 363 7.650834 AATGTTTTATACGCTTGCACATTTT 57.349 28.000 0.00 0.00 30.94 1.82
354 364 6.683090 TGTTTTATACGCTTGCACATTTTC 57.317 33.333 0.00 0.00 0.00 2.29
355 365 6.209361 TGTTTTATACGCTTGCACATTTTCA 58.791 32.000 0.00 0.00 0.00 2.69
356 366 6.362016 TGTTTTATACGCTTGCACATTTTCAG 59.638 34.615 0.00 0.00 0.00 3.02
357 367 2.330231 TACGCTTGCACATTTTCAGC 57.670 45.000 0.00 0.00 0.00 4.26
358 368 0.385029 ACGCTTGCACATTTTCAGCA 59.615 45.000 5.25 0.00 36.32 4.41
359 369 0.780002 CGCTTGCACATTTTCAGCAC 59.220 50.000 5.25 0.00 38.11 4.40
360 370 0.780002 GCTTGCACATTTTCAGCACG 59.220 50.000 0.00 0.00 38.11 5.34
361 371 1.600164 GCTTGCACATTTTCAGCACGA 60.600 47.619 0.00 0.00 38.11 4.35
362 372 2.730069 CTTGCACATTTTCAGCACGAA 58.270 42.857 0.00 0.00 38.11 3.85
363 373 2.859526 TGCACATTTTCAGCACGAAA 57.140 40.000 0.00 0.00 41.95 3.46
364 374 3.367992 TGCACATTTTCAGCACGAAAT 57.632 38.095 2.57 0.00 43.12 2.17
365 375 3.051327 TGCACATTTTCAGCACGAAATG 58.949 40.909 13.66 13.66 43.12 2.32
366 376 3.243334 TGCACATTTTCAGCACGAAATGA 60.243 39.130 19.12 0.00 43.12 2.57
367 377 3.120121 GCACATTTTCAGCACGAAATGAC 59.880 43.478 19.12 10.70 43.12 3.06
368 378 4.289342 CACATTTTCAGCACGAAATGACA 58.711 39.130 19.12 1.12 43.12 3.58
369 379 4.919168 CACATTTTCAGCACGAAATGACAT 59.081 37.500 19.12 3.01 43.12 3.06
370 380 5.403166 CACATTTTCAGCACGAAATGACATT 59.597 36.000 19.12 0.00 43.12 2.71
371 381 5.630680 ACATTTTCAGCACGAAATGACATTC 59.369 36.000 19.12 0.00 43.12 2.67
380 390 3.163594 CGAAATGACATTCGTGAAAGGC 58.836 45.455 0.05 0.00 45.32 4.35
381 391 2.900122 AATGACATTCGTGAAAGGCG 57.100 45.000 0.00 0.00 0.00 5.52
382 392 1.808411 ATGACATTCGTGAAAGGCGT 58.192 45.000 0.00 0.00 0.00 5.68
383 393 0.865111 TGACATTCGTGAAAGGCGTG 59.135 50.000 0.00 0.00 0.00 5.34
384 394 0.165944 GACATTCGTGAAAGGCGTGG 59.834 55.000 0.00 0.00 0.00 4.94
385 395 1.154225 CATTCGTGAAAGGCGTGGC 60.154 57.895 0.00 0.00 0.00 5.01
386 396 2.677003 ATTCGTGAAAGGCGTGGCG 61.677 57.895 0.00 0.00 0.00 5.69
387 397 3.793775 TTCGTGAAAGGCGTGGCGA 62.794 57.895 0.00 0.00 0.00 5.54
388 398 3.342627 CGTGAAAGGCGTGGCGAA 61.343 61.111 0.00 0.00 0.00 4.70
389 399 2.887889 CGTGAAAGGCGTGGCGAAA 61.888 57.895 0.00 0.00 0.00 3.46
390 400 1.357334 GTGAAAGGCGTGGCGAAAA 59.643 52.632 0.00 0.00 0.00 2.29
391 401 0.248702 GTGAAAGGCGTGGCGAAAAA 60.249 50.000 0.00 0.00 0.00 1.94
414 424 7.703298 AAAAATAAAACCGGCACTCTAAAAC 57.297 32.000 0.00 0.00 0.00 2.43
415 425 4.673534 ATAAAACCGGCACTCTAAAACG 57.326 40.909 0.00 0.00 0.00 3.60
416 426 1.957668 AAACCGGCACTCTAAAACGT 58.042 45.000 0.00 0.00 0.00 3.99
417 427 1.223187 AACCGGCACTCTAAAACGTG 58.777 50.000 0.00 0.00 0.00 4.49
418 428 0.105408 ACCGGCACTCTAAAACGTGT 59.895 50.000 0.00 0.00 33.78 4.49
419 429 1.223187 CCGGCACTCTAAAACGTGTT 58.777 50.000 0.00 0.00 33.78 3.32
420 430 1.193874 CCGGCACTCTAAAACGTGTTC 59.806 52.381 0.00 0.00 33.78 3.18
421 431 1.862201 CGGCACTCTAAAACGTGTTCA 59.138 47.619 0.00 0.00 33.78 3.18
422 432 2.285756 CGGCACTCTAAAACGTGTTCAA 59.714 45.455 0.00 0.00 33.78 2.69
423 433 3.242478 CGGCACTCTAAAACGTGTTCAAA 60.242 43.478 0.00 0.00 33.78 2.69
424 434 4.664188 GGCACTCTAAAACGTGTTCAAAA 58.336 39.130 0.00 0.00 33.78 2.44
425 435 4.497966 GGCACTCTAAAACGTGTTCAAAAC 59.502 41.667 0.00 0.00 33.78 2.43
426 436 5.329493 GCACTCTAAAACGTGTTCAAAACT 58.671 37.500 0.00 0.00 33.78 2.66
427 437 6.457257 GGCACTCTAAAACGTGTTCAAAACTA 60.457 38.462 0.00 0.00 33.78 2.24
428 438 6.962678 GCACTCTAAAACGTGTTCAAAACTAA 59.037 34.615 0.00 0.00 33.78 2.24
429 439 7.045160 GCACTCTAAAACGTGTTCAAAACTAAC 60.045 37.037 0.00 0.00 33.78 2.34
430 440 7.958567 CACTCTAAAACGTGTTCAAAACTAACA 59.041 33.333 0.00 0.00 34.56 2.41
431 441 8.671028 ACTCTAAAACGTGTTCAAAACTAACAT 58.329 29.630 0.00 0.00 38.95 2.71
432 442 9.498307 CTCTAAAACGTGTTCAAAACTAACATT 57.502 29.630 0.00 0.00 38.95 2.71
433 443 9.843334 TCTAAAACGTGTTCAAAACTAACATTT 57.157 25.926 0.00 0.00 38.95 2.32
476 486 4.935352 TTTTCCCTGACTTCCACAAATG 57.065 40.909 0.00 0.00 0.00 2.32
477 487 3.593442 TTCCCTGACTTCCACAAATGT 57.407 42.857 0.00 0.00 0.00 2.71
478 488 3.140325 TCCCTGACTTCCACAAATGTC 57.860 47.619 0.00 0.00 0.00 3.06
479 489 2.441375 TCCCTGACTTCCACAAATGTCA 59.559 45.455 0.00 0.00 37.76 3.58
480 490 3.074390 TCCCTGACTTCCACAAATGTCAT 59.926 43.478 0.00 0.00 38.52 3.06
481 491 3.828451 CCCTGACTTCCACAAATGTCATT 59.172 43.478 0.00 0.00 38.52 2.57
482 492 4.281688 CCCTGACTTCCACAAATGTCATTT 59.718 41.667 4.91 4.91 38.52 2.32
483 493 5.464168 CCTGACTTCCACAAATGTCATTTC 58.536 41.667 7.87 0.00 38.52 2.17
484 494 5.107109 TGACTTCCACAAATGTCATTTCG 57.893 39.130 7.87 6.94 34.94 3.46
485 495 4.578516 TGACTTCCACAAATGTCATTTCGT 59.421 37.500 7.87 7.50 34.94 3.85
486 496 4.858935 ACTTCCACAAATGTCATTTCGTG 58.141 39.130 21.58 21.58 34.28 4.35
487 497 3.281341 TCCACAAATGTCATTTCGTGC 57.719 42.857 22.37 0.00 33.73 5.34
488 498 2.884012 TCCACAAATGTCATTTCGTGCT 59.116 40.909 22.37 0.00 33.73 4.40
489 499 2.981805 CCACAAATGTCATTTCGTGCTG 59.018 45.455 22.37 11.07 33.73 4.41
490 500 3.304592 CCACAAATGTCATTTCGTGCTGA 60.305 43.478 22.37 0.00 33.73 4.26
491 501 4.289342 CACAAATGTCATTTCGTGCTGAA 58.711 39.130 19.03 0.00 33.85 3.02
502 512 5.881637 TTTCGTGCTGAAATTTTACAAGC 57.118 34.783 0.00 0.98 41.59 4.01
503 513 4.560136 TCGTGCTGAAATTTTACAAGCA 57.440 36.364 12.15 12.15 0.00 3.91
504 514 5.119931 TCGTGCTGAAATTTTACAAGCAT 57.880 34.783 16.65 0.00 33.32 3.79
505 515 4.916831 TCGTGCTGAAATTTTACAAGCATG 59.083 37.500 20.81 20.81 38.65 4.06
506 516 4.433283 CGTGCTGAAATTTTACAAGCATGC 60.433 41.667 10.51 10.51 32.36 4.06
507 517 4.448395 GTGCTGAAATTTTACAAGCATGCA 59.552 37.500 21.98 0.00 33.32 3.96
508 518 5.050227 GTGCTGAAATTTTACAAGCATGCAA 60.050 36.000 21.98 4.19 33.32 4.08
509 519 5.526479 TGCTGAAATTTTACAAGCATGCAAA 59.474 32.000 21.98 11.51 0.00 3.68
510 520 6.037940 TGCTGAAATTTTACAAGCATGCAAAA 59.962 30.769 21.98 17.23 36.49 2.44
511 521 6.357766 GCTGAAATTTTACAAGCATGCAAAAC 59.642 34.615 21.98 6.76 35.25 2.43
512 522 7.312657 TGAAATTTTACAAGCATGCAAAACA 57.687 28.000 21.98 9.10 35.25 2.83
513 523 7.928103 TGAAATTTTACAAGCATGCAAAACAT 58.072 26.923 21.98 9.70 35.25 2.71
514 524 8.404000 TGAAATTTTACAAGCATGCAAAACATT 58.596 25.926 21.98 14.78 35.25 2.71
515 525 9.235537 GAAATTTTACAAGCATGCAAAACATTT 57.764 25.926 21.98 16.46 35.25 2.32
516 526 8.563289 AATTTTACAAGCATGCAAAACATTTG 57.437 26.923 21.98 15.52 35.25 2.32
517 527 6.674694 TTTACAAGCATGCAAAACATTTGT 57.325 29.167 21.98 20.25 40.87 2.83
518 528 4.799419 ACAAGCATGCAAAACATTTGTC 57.201 36.364 21.98 0.00 35.68 3.18
519 529 4.190001 ACAAGCATGCAAAACATTTGTCA 58.810 34.783 21.98 4.20 35.68 3.58
520 530 4.634883 ACAAGCATGCAAAACATTTGTCAA 59.365 33.333 21.98 0.00 35.68 3.18
521 531 5.123502 ACAAGCATGCAAAACATTTGTCAAA 59.876 32.000 21.98 0.00 35.68 2.69
522 532 5.412526 AGCATGCAAAACATTTGTCAAAG 57.587 34.783 21.98 0.00 36.64 2.77
523 533 4.877251 AGCATGCAAAACATTTGTCAAAGT 59.123 33.333 21.98 0.09 36.64 2.66
524 534 5.354792 AGCATGCAAAACATTTGTCAAAGTT 59.645 32.000 21.98 5.89 36.64 2.66
525 535 6.538021 AGCATGCAAAACATTTGTCAAAGTTA 59.462 30.769 21.98 0.00 36.64 2.24
526 536 6.628461 GCATGCAAAACATTTGTCAAAGTTAC 59.372 34.615 14.21 3.85 36.64 2.50
527 537 6.654793 TGCAAAACATTTGTCAAAGTTACC 57.345 33.333 4.03 2.79 0.00 2.85
528 538 5.289675 TGCAAAACATTTGTCAAAGTTACCG 59.710 36.000 4.03 3.21 0.00 4.02
529 539 5.289917 GCAAAACATTTGTCAAAGTTACCGT 59.710 36.000 4.03 0.00 0.00 4.83
530 540 6.472808 GCAAAACATTTGTCAAAGTTACCGTA 59.527 34.615 4.03 0.00 0.00 4.02
531 541 7.009357 GCAAAACATTTGTCAAAGTTACCGTAA 59.991 33.333 4.03 0.00 0.00 3.18
532 542 9.026074 CAAAACATTTGTCAAAGTTACCGTAAT 57.974 29.630 4.03 0.00 0.00 1.89
597 607 9.897744 TTTACTGTTTATGAGAAAGCATTTGAG 57.102 29.630 0.00 0.00 39.27 3.02
598 608 6.385033 ACTGTTTATGAGAAAGCATTTGAGC 58.615 36.000 0.00 0.00 39.27 4.26
600 610 6.615088 TGTTTATGAGAAAGCATTTGAGCTC 58.385 36.000 6.82 6.82 45.89 4.09
601 611 6.207221 TGTTTATGAGAAAGCATTTGAGCTCA 59.793 34.615 13.74 13.74 45.89 4.26
602 612 4.966965 ATGAGAAAGCATTTGAGCTCAG 57.033 40.909 17.43 6.81 45.89 3.35
603 613 3.079578 TGAGAAAGCATTTGAGCTCAGG 58.920 45.455 17.43 11.70 45.89 3.86
604 614 3.244665 TGAGAAAGCATTTGAGCTCAGGA 60.245 43.478 17.43 10.35 45.89 3.86
605 615 3.345414 AGAAAGCATTTGAGCTCAGGAG 58.655 45.455 17.43 11.33 45.89 3.69
606 616 1.817447 AAAGCATTTGAGCTCAGGAGC 59.183 47.619 17.43 19.96 45.89 4.70
626 636 6.107901 GAGCATATACTCCATGTCCTTTCT 57.892 41.667 0.00 0.00 0.00 2.52
627 637 7.233389 GAGCATATACTCCATGTCCTTTCTA 57.767 40.000 0.00 0.00 0.00 2.10
628 638 7.805083 AGCATATACTCCATGTCCTTTCTAT 57.195 36.000 0.00 0.00 0.00 1.98
629 639 8.901472 AGCATATACTCCATGTCCTTTCTATA 57.099 34.615 0.00 0.00 0.00 1.31
630 640 9.499369 AGCATATACTCCATGTCCTTTCTATAT 57.501 33.333 0.00 0.00 0.00 0.86
631 641 9.757227 GCATATACTCCATGTCCTTTCTATATC 57.243 37.037 0.00 0.00 0.00 1.63
636 646 8.644374 ACTCCATGTCCTTTCTATATCTACTC 57.356 38.462 0.00 0.00 0.00 2.59
637 647 7.672239 ACTCCATGTCCTTTCTATATCTACTCC 59.328 40.741 0.00 0.00 0.00 3.85
638 648 7.770662 TCCATGTCCTTTCTATATCTACTCCT 58.229 38.462 0.00 0.00 0.00 3.69
639 649 7.891183 TCCATGTCCTTTCTATATCTACTCCTC 59.109 40.741 0.00 0.00 0.00 3.71
640 650 7.671819 CCATGTCCTTTCTATATCTACTCCTCA 59.328 40.741 0.00 0.00 0.00 3.86
641 651 8.519526 CATGTCCTTTCTATATCTACTCCTCAC 58.480 40.741 0.00 0.00 0.00 3.51
642 652 7.817440 TGTCCTTTCTATATCTACTCCTCACT 58.183 38.462 0.00 0.00 0.00 3.41
643 653 7.940137 TGTCCTTTCTATATCTACTCCTCACTC 59.060 40.741 0.00 0.00 0.00 3.51
644 654 7.392393 GTCCTTTCTATATCTACTCCTCACTCC 59.608 44.444 0.00 0.00 0.00 3.85
645 655 6.373216 CCTTTCTATATCTACTCCTCACTCCG 59.627 46.154 0.00 0.00 0.00 4.63
646 656 6.436738 TTCTATATCTACTCCTCACTCCGT 57.563 41.667 0.00 0.00 0.00 4.69
647 657 6.040209 TCTATATCTACTCCTCACTCCGTC 57.960 45.833 0.00 0.00 0.00 4.79
648 658 4.986054 ATATCTACTCCTCACTCCGTCT 57.014 45.455 0.00 0.00 0.00 4.18
649 659 2.695127 TCTACTCCTCACTCCGTCTC 57.305 55.000 0.00 0.00 0.00 3.36
650 660 1.907255 TCTACTCCTCACTCCGTCTCA 59.093 52.381 0.00 0.00 0.00 3.27
651 661 2.506231 TCTACTCCTCACTCCGTCTCAT 59.494 50.000 0.00 0.00 0.00 2.90
652 662 3.710165 TCTACTCCTCACTCCGTCTCATA 59.290 47.826 0.00 0.00 0.00 2.15
653 663 3.367646 ACTCCTCACTCCGTCTCATAA 57.632 47.619 0.00 0.00 0.00 1.90
654 664 3.904717 ACTCCTCACTCCGTCTCATAAT 58.095 45.455 0.00 0.00 0.00 1.28
655 665 5.050126 ACTCCTCACTCCGTCTCATAATA 57.950 43.478 0.00 0.00 0.00 0.98
656 666 5.636123 ACTCCTCACTCCGTCTCATAATAT 58.364 41.667 0.00 0.00 0.00 1.28
657 667 6.780901 ACTCCTCACTCCGTCTCATAATATA 58.219 40.000 0.00 0.00 0.00 0.86
658 668 7.232188 ACTCCTCACTCCGTCTCATAATATAA 58.768 38.462 0.00 0.00 0.00 0.98
659 669 7.891183 ACTCCTCACTCCGTCTCATAATATAAT 59.109 37.037 0.00 0.00 0.00 1.28
660 670 9.397280 CTCCTCACTCCGTCTCATAATATAATA 57.603 37.037 0.00 0.00 0.00 0.98
661 671 9.922477 TCCTCACTCCGTCTCATAATATAATAT 57.078 33.333 0.00 0.00 0.00 1.28
709 719 5.736040 AAAACGTCTTACACTATCGAACG 57.264 39.130 0.00 0.00 0.00 3.95
710 720 3.395858 ACGTCTTACACTATCGAACGG 57.604 47.619 5.61 0.00 0.00 4.44
711 721 3.002791 ACGTCTTACACTATCGAACGGA 58.997 45.455 5.61 0.00 0.00 4.69
712 722 3.063180 ACGTCTTACACTATCGAACGGAG 59.937 47.826 5.61 0.00 0.00 4.63
713 723 3.361414 GTCTTACACTATCGAACGGAGC 58.639 50.000 0.00 0.00 0.00 4.70
714 724 3.011818 TCTTACACTATCGAACGGAGCA 58.988 45.455 0.00 0.00 0.00 4.26
715 725 3.441222 TCTTACACTATCGAACGGAGCAA 59.559 43.478 0.00 0.00 0.00 3.91
716 726 2.961526 ACACTATCGAACGGAGCAAT 57.038 45.000 0.00 0.00 0.00 3.56
717 727 2.540515 ACACTATCGAACGGAGCAATG 58.459 47.619 0.00 0.00 0.00 2.82
718 728 2.165641 ACACTATCGAACGGAGCAATGA 59.834 45.455 0.00 0.00 0.00 2.57
719 729 2.791560 CACTATCGAACGGAGCAATGAG 59.208 50.000 0.00 0.00 0.00 2.90
720 730 2.427453 ACTATCGAACGGAGCAATGAGT 59.573 45.455 0.00 0.00 0.00 3.41
721 731 3.630769 ACTATCGAACGGAGCAATGAGTA 59.369 43.478 0.00 0.00 0.00 2.59
722 732 2.561733 TCGAACGGAGCAATGAGTAG 57.438 50.000 0.00 0.00 0.00 2.57
723 733 1.816835 TCGAACGGAGCAATGAGTAGT 59.183 47.619 0.00 0.00 0.00 2.73
724 734 3.011818 TCGAACGGAGCAATGAGTAGTA 58.988 45.455 0.00 0.00 0.00 1.82
725 735 3.064958 TCGAACGGAGCAATGAGTAGTAG 59.935 47.826 0.00 0.00 0.00 2.57
726 736 3.181499 CGAACGGAGCAATGAGTAGTAGT 60.181 47.826 0.00 0.00 0.00 2.73
727 737 3.784701 ACGGAGCAATGAGTAGTAGTG 57.215 47.619 0.00 0.00 0.00 2.74
728 738 2.427453 ACGGAGCAATGAGTAGTAGTGG 59.573 50.000 0.00 0.00 0.00 4.00
738 748 4.350245 TGAGTAGTAGTGGGTAGCAACAT 58.650 43.478 1.58 0.00 0.00 2.71
744 754 1.185315 GTGGGTAGCAACATGCCATT 58.815 50.000 0.00 0.00 46.52 3.16
779 794 2.589798 TGGTCGTCGTGAAAAGTCTT 57.410 45.000 0.00 0.00 0.00 3.01
800 815 1.813178 CGGGGAAGAAAAGGAAAGCTC 59.187 52.381 0.00 0.00 0.00 4.09
841 860 3.441290 CTGCAGCCAGGCTCTTGC 61.441 66.667 12.53 14.48 36.40 4.01
842 861 4.274008 TGCAGCCAGGCTCTTGCA 62.274 61.111 20.24 20.24 41.91 4.08
843 862 3.441290 GCAGCCAGGCTCTTGCAG 61.441 66.667 12.53 0.00 41.91 4.41
852 871 3.730761 CTCTTGCAGCACGGCACC 61.731 66.667 0.00 0.00 44.86 5.01
866 885 4.748798 CACCCTGCCTCCCTCCCT 62.749 72.222 0.00 0.00 0.00 4.20
867 886 4.423209 ACCCTGCCTCCCTCCCTC 62.423 72.222 0.00 0.00 0.00 4.30
875 894 3.036959 TCCCTCCCTCCCTCCCTC 61.037 72.222 0.00 0.00 0.00 4.30
889 908 5.120479 TCCCTCCCTCCCTACATATACATA 58.880 45.833 0.00 0.00 0.00 2.29
925 944 2.157738 ACGTACTACCTCACCTCACAC 58.842 52.381 0.00 0.00 0.00 3.82
926 945 2.156917 CGTACTACCTCACCTCACACA 58.843 52.381 0.00 0.00 0.00 3.72
937 956 0.602106 CCTCACACAGTCACCAGCTG 60.602 60.000 6.78 6.78 39.67 4.24
943 962 1.121407 ACAGTCACCAGCTGCTACCA 61.121 55.000 8.66 0.00 37.47 3.25
951 970 1.139654 CCAGCTGCTACCATCTTGCTA 59.860 52.381 8.66 0.00 0.00 3.49
966 985 5.880054 TCTTGCTAAACAATCCAAGCTAC 57.120 39.130 0.00 0.00 37.72 3.58
970 989 5.811190 TGCTAAACAATCCAAGCTACCTAA 58.189 37.500 0.00 0.00 35.95 2.69
971 990 6.242396 TGCTAAACAATCCAAGCTACCTAAA 58.758 36.000 0.00 0.00 35.95 1.85
977 996 3.874392 TCCAAGCTACCTAAACGTACC 57.126 47.619 0.00 0.00 0.00 3.34
979 998 4.599041 TCCAAGCTACCTAAACGTACCTA 58.401 43.478 0.00 0.00 0.00 3.08
980 999 5.016173 TCCAAGCTACCTAAACGTACCTAA 58.984 41.667 0.00 0.00 0.00 2.69
988 1007 3.194116 CCTAAACGTACCTAAGTGAGCCA 59.806 47.826 0.00 0.00 0.00 4.75
989 1008 3.314541 AAACGTACCTAAGTGAGCCAG 57.685 47.619 0.00 0.00 0.00 4.85
991 1010 1.817447 ACGTACCTAAGTGAGCCAGTC 59.183 52.381 0.00 0.00 0.00 3.51
1006 1043 2.278857 GTCGATCGAGCATGGCGT 60.279 61.111 20.09 0.00 0.00 5.68
1168 1205 1.080705 GTCACCTTCCTCGACACCG 60.081 63.158 0.00 0.00 37.07 4.94
1203 1240 1.276421 CCTCACACCAACGAGATCCTT 59.724 52.381 0.00 0.00 0.00 3.36
1236 1273 8.562949 AGGTAATTAAGCTTGGTCCTAGAATA 57.437 34.615 9.86 0.00 29.36 1.75
1238 1275 9.274206 GGTAATTAAGCTTGGTCCTAGAATAAG 57.726 37.037 9.86 0.00 0.00 1.73
1241 1278 7.735326 TTAAGCTTGGTCCTAGAATAAGACT 57.265 36.000 9.86 0.00 0.00 3.24
1254 1304 9.959749 CCTAGAATAAGACTGTTTGATCTCTAC 57.040 37.037 0.00 0.00 0.00 2.59
1350 1408 0.482446 TGGATCTGGCCACCAAGTTT 59.518 50.000 11.05 0.00 30.80 2.66
1530 1735 5.141355 GTGTCTGCTACTACACTACTACG 57.859 47.826 0.00 0.00 42.17 3.51
1536 1741 7.378461 GTCTGCTACTACACTACTACGTACTAG 59.622 44.444 7.48 7.48 0.00 2.57
1570 2552 8.973835 TTCTGTAATTCGTTTCTTGTTTTGTT 57.026 26.923 0.00 0.00 0.00 2.83
1576 2558 5.814314 TCGTTTCTTGTTTTGTTTGTGTG 57.186 34.783 0.00 0.00 0.00 3.82
1577 2559 4.681942 TCGTTTCTTGTTTTGTTTGTGTGG 59.318 37.500 0.00 0.00 0.00 4.17
1581 2563 4.739195 TCTTGTTTTGTTTGTGTGGCTAC 58.261 39.130 0.00 0.00 0.00 3.58
1585 2567 3.773860 TTTGTTTGTGTGGCTACTGTG 57.226 42.857 0.64 0.00 0.00 3.66
1586 2568 1.674359 TGTTTGTGTGGCTACTGTGG 58.326 50.000 0.64 0.00 0.00 4.17
1593 2676 3.071747 TGTGTGGCTACTGTGGATAAACA 59.928 43.478 0.64 0.00 0.00 2.83
1607 2690 7.700505 TGTGGATAAACACATACTACGAGTAG 58.299 38.462 8.58 8.58 45.70 2.57
1608 2691 7.337689 TGTGGATAAACACATACTACGAGTAGT 59.662 37.037 18.41 18.41 45.70 2.73
1645 3443 9.355916 TGTACCACTATATAGATAGATCCATGC 57.644 37.037 16.79 0.00 37.81 4.06
1646 3444 9.581289 GTACCACTATATAGATAGATCCATGCT 57.419 37.037 16.79 0.00 37.81 3.79
1647 3445 8.704849 ACCACTATATAGATAGATCCATGCTC 57.295 38.462 16.79 0.00 37.81 4.26
1648 3446 7.728083 ACCACTATATAGATAGATCCATGCTCC 59.272 40.741 16.79 0.00 37.81 4.70
1656 3454 6.430007 AGATAGATCCATGCTCCTTGTTTTT 58.570 36.000 0.00 0.00 0.00 1.94
1657 3455 6.545298 AGATAGATCCATGCTCCTTGTTTTTC 59.455 38.462 0.00 0.00 0.00 2.29
1658 3456 4.410099 AGATCCATGCTCCTTGTTTTTCA 58.590 39.130 0.00 0.00 0.00 2.69
1659 3457 5.021458 AGATCCATGCTCCTTGTTTTTCAT 58.979 37.500 0.00 0.00 0.00 2.57
1660 3458 6.189859 AGATCCATGCTCCTTGTTTTTCATA 58.810 36.000 0.00 0.00 0.00 2.15
1661 3459 6.837568 AGATCCATGCTCCTTGTTTTTCATAT 59.162 34.615 0.00 0.00 0.00 1.78
1662 3460 6.855763 TCCATGCTCCTTGTTTTTCATATT 57.144 33.333 0.00 0.00 0.00 1.28
1663 3461 6.632909 TCCATGCTCCTTGTTTTTCATATTG 58.367 36.000 0.00 0.00 0.00 1.90
1664 3462 5.292589 CCATGCTCCTTGTTTTTCATATTGC 59.707 40.000 0.00 0.00 0.00 3.56
1665 3463 4.819769 TGCTCCTTGTTTTTCATATTGCC 58.180 39.130 0.00 0.00 0.00 4.52
1666 3464 3.859386 GCTCCTTGTTTTTCATATTGCCG 59.141 43.478 0.00 0.00 0.00 5.69
1667 3465 4.423732 CTCCTTGTTTTTCATATTGCCGG 58.576 43.478 0.00 0.00 0.00 6.13
1668 3466 3.829601 TCCTTGTTTTTCATATTGCCGGT 59.170 39.130 1.90 0.00 0.00 5.28
2133 4055 8.983724 GGCTTCTAATGTACAATCATCTAACTC 58.016 37.037 0.00 0.00 0.00 3.01
2146 4068 9.276590 CAATCATCTAACTCATGGTGCTTATAA 57.723 33.333 0.00 0.00 0.00 0.98
2158 5314 5.659463 TGGTGCTTATAATTTGTGGAATGC 58.341 37.500 0.00 0.00 0.00 3.56
2162 5318 6.473455 GTGCTTATAATTTGTGGAATGCTCAC 59.527 38.462 0.00 0.00 35.82 3.51
2273 5429 1.542108 GCTGGCTCTTTCACTGACAGT 60.542 52.381 1.07 1.07 0.00 3.55
2281 5437 4.945246 TCTTTCACTGACAGTGTTCTACC 58.055 43.478 29.87 0.00 46.03 3.18
2289 5445 3.070878 TGACAGTGTTCTACCATTGCAGA 59.929 43.478 0.00 0.00 0.00 4.26
2310 5466 6.095440 GCAGATTTTACCTAGATTTCAGCCAA 59.905 38.462 0.00 0.00 0.00 4.52
2565 5721 0.393077 CCATGGTGACCGATACCCTC 59.607 60.000 2.57 0.00 37.40 4.30
2566 5722 0.393077 CATGGTGACCGATACCCTCC 59.607 60.000 0.00 0.00 37.40 4.30
2627 5783 2.550180 GTCCTCTTGGAAAGTTGAGTGC 59.450 50.000 0.00 0.00 46.34 4.40
2691 5847 0.579630 CACGTTTAGCAGTGCACGAA 59.420 50.000 27.08 12.21 36.48 3.85
2786 5942 0.826715 ACATGGTCTAGCTGCACGAT 59.173 50.000 1.02 0.00 0.00 3.73
2793 5949 2.004808 CTAGCTGCACGATCGGTCCA 62.005 60.000 20.98 11.76 0.00 4.02
2838 5994 5.705905 GGTTTGTGGACTAATAACTTGAGCT 59.294 40.000 0.00 0.00 0.00 4.09
2895 6051 4.997395 AGAACGAGAGAAAAGCAGCAAATA 59.003 37.500 0.00 0.00 0.00 1.40
3040 6197 2.166459 CCGAAGCAGATGGTGAAGAGTA 59.834 50.000 0.00 0.00 0.00 2.59
3108 6265 4.291249 AGAAGGCCTTGTTTGGTTATAGGA 59.709 41.667 26.25 0.00 0.00 2.94
3142 6299 5.905331 TCCATAGTGGAAGTAATCCTCATGT 59.095 40.000 0.00 0.00 45.00 3.21
3200 6357 4.473520 CCCAGTAGTGGCGGGCAG 62.474 72.222 11.48 0.00 43.44 4.85
3258 6416 3.019564 GAGTTACTGGCCGTTACTCCTA 58.980 50.000 24.03 0.00 43.19 2.94
3274 6432 3.911260 ACTCCTATCGGGATCTAGACTGA 59.089 47.826 0.00 0.00 44.15 3.41
3307 6465 1.276421 ACACTAGTCTTTCCTGCGCAT 59.724 47.619 12.24 0.00 0.00 4.73
3328 6486 2.125912 GTCCTCACTCGTGCGCAT 60.126 61.111 15.91 0.00 0.00 4.73
3331 6489 1.029947 TCCTCACTCGTGCGCATCTA 61.030 55.000 15.91 0.44 0.00 1.98
3358 6516 3.487120 ACTTTCTAGTTGGTCACCCAC 57.513 47.619 0.00 0.00 41.67 4.61
3381 6539 4.219288 CCCTAAAATTGCTTCAAGCTGAGT 59.781 41.667 11.57 0.00 42.97 3.41
3382 6540 5.159209 CCTAAAATTGCTTCAAGCTGAGTG 58.841 41.667 11.57 0.00 42.97 3.51
3395 6553 2.035961 AGCTGAGTGTGCTTAACTTCGA 59.964 45.455 0.00 0.00 37.52 3.71
3490 8410 0.833949 TGTTATCATAGGGGCGCACA 59.166 50.000 13.89 0.00 0.00 4.57
3502 8422 2.734723 CGCACACCACTGGTCTCG 60.735 66.667 0.00 0.00 31.02 4.04
3506 8426 2.134287 ACACCACTGGTCTCGTGCT 61.134 57.895 0.00 0.00 31.02 4.40
3565 8485 6.348540 CCACCACAAGTAGAGCACTTAAATTC 60.349 42.308 0.00 0.00 46.04 2.17
3569 8489 5.643777 ACAAGTAGAGCACTTAAATTCGCAT 59.356 36.000 0.00 0.00 46.04 4.73
3573 8493 6.986817 AGTAGAGCACTTAAATTCGCATACAT 59.013 34.615 0.00 0.00 31.59 2.29
3590 8510 6.275335 GCATACATTGTTTATTGTCTGCCAT 58.725 36.000 0.00 0.00 38.99 4.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 39 6.835995 CTTCGTTAGAACCGTAAAGTACGACT 60.836 42.308 9.29 7.94 42.05 4.18
57 60 5.529791 ACCAGTCCATCGATAATAACTTCG 58.470 41.667 0.00 0.00 36.72 3.79
58 61 6.513180 TGACCAGTCCATCGATAATAACTTC 58.487 40.000 0.00 0.00 0.00 3.01
69 79 0.034059 GCCCTATGACCAGTCCATCG 59.966 60.000 0.00 0.00 0.00 3.84
71 81 0.691078 ACGCCCTATGACCAGTCCAT 60.691 55.000 0.00 0.00 0.00 3.41
84 94 2.119029 TGACATCGATCGACGCCCT 61.119 57.895 22.06 0.09 42.26 5.19
87 97 1.226575 TGGTGACATCGATCGACGC 60.227 57.895 22.06 14.25 37.39 5.19
106 116 4.108299 CCATGTACGCCCCTGCCA 62.108 66.667 0.00 0.00 0.00 4.92
113 123 3.192922 GCGGTGACCATGTACGCC 61.193 66.667 1.11 8.36 44.01 5.68
120 130 4.481368 TTAGATAAACTGCGGTGACCAT 57.519 40.909 0.00 0.00 0.00 3.55
148 158 1.726791 GGCACACAGACACGACTAATG 59.273 52.381 0.00 0.00 0.00 1.90
153 163 2.027024 TCGGCACACAGACACGAC 59.973 61.111 0.00 0.00 0.00 4.34
178 188 3.857549 GACAAATCCTTGGCCTTCTTC 57.142 47.619 3.32 0.00 34.08 2.87
216 226 7.345192 CAAAATAATACGGAGATCTTTCCACG 58.655 38.462 0.00 0.03 37.05 4.94
218 228 7.054124 AGCAAAATAATACGGAGATCTTTCCA 58.946 34.615 0.00 0.00 37.05 3.53
242 252 0.392193 AGTGCATTTGAGCTCGGGAG 60.392 55.000 9.64 0.30 33.52 4.30
243 253 0.391661 GAGTGCATTTGAGCTCGGGA 60.392 55.000 9.64 0.00 33.52 5.14
244 254 0.392193 AGAGTGCATTTGAGCTCGGG 60.392 55.000 9.64 0.00 33.52 5.14
245 255 1.005340 GAGAGTGCATTTGAGCTCGG 58.995 55.000 9.64 0.00 33.52 4.63
246 256 1.718396 TGAGAGTGCATTTGAGCTCG 58.282 50.000 9.64 0.00 33.52 5.03
247 257 3.268330 TGATGAGAGTGCATTTGAGCTC 58.732 45.455 6.82 6.82 34.99 4.09
248 258 3.345508 TGATGAGAGTGCATTTGAGCT 57.654 42.857 0.00 0.00 34.99 4.09
249 259 3.189910 TGTTGATGAGAGTGCATTTGAGC 59.810 43.478 0.00 0.00 0.00 4.26
250 260 4.454847 ACTGTTGATGAGAGTGCATTTGAG 59.545 41.667 0.00 0.00 29.32 3.02
251 261 4.392047 ACTGTTGATGAGAGTGCATTTGA 58.608 39.130 0.00 0.00 29.32 2.69
252 262 4.761235 ACTGTTGATGAGAGTGCATTTG 57.239 40.909 0.00 0.00 29.32 2.32
253 263 6.882610 TTTACTGTTGATGAGAGTGCATTT 57.117 33.333 0.00 0.00 33.32 2.32
254 264 6.882610 TTTTACTGTTGATGAGAGTGCATT 57.117 33.333 0.00 0.00 33.32 3.56
255 265 6.882610 TTTTTACTGTTGATGAGAGTGCAT 57.117 33.333 0.00 0.00 33.32 3.96
316 326 9.983431 GCGTATAAAACATTTGTCAAAGTTTAC 57.017 29.630 18.15 14.14 33.45 2.01
317 327 9.953697 AGCGTATAAAACATTTGTCAAAGTTTA 57.046 25.926 18.15 14.77 33.45 2.01
318 328 8.865590 AGCGTATAAAACATTTGTCAAAGTTT 57.134 26.923 14.74 14.74 35.87 2.66
319 329 8.751335 CAAGCGTATAAAACATTTGTCAAAGTT 58.249 29.630 4.03 5.89 0.00 2.66
320 330 7.096230 GCAAGCGTATAAAACATTTGTCAAAGT 60.096 33.333 4.03 0.09 0.00 2.66
321 331 7.096271 TGCAAGCGTATAAAACATTTGTCAAAG 60.096 33.333 4.03 0.00 0.00 2.77
322 332 6.697455 TGCAAGCGTATAAAACATTTGTCAAA 59.303 30.769 0.00 0.00 0.00 2.69
323 333 6.143118 GTGCAAGCGTATAAAACATTTGTCAA 59.857 34.615 0.00 0.00 0.00 3.18
324 334 5.627367 GTGCAAGCGTATAAAACATTTGTCA 59.373 36.000 0.00 0.00 0.00 3.58
325 335 5.627367 TGTGCAAGCGTATAAAACATTTGTC 59.373 36.000 0.00 0.00 0.00 3.18
326 336 5.524284 TGTGCAAGCGTATAAAACATTTGT 58.476 33.333 0.00 0.00 0.00 2.83
327 337 6.630676 ATGTGCAAGCGTATAAAACATTTG 57.369 33.333 0.00 0.00 0.00 2.32
328 338 7.650834 AAATGTGCAAGCGTATAAAACATTT 57.349 28.000 9.96 9.96 40.22 2.32
329 339 7.383572 TGAAAATGTGCAAGCGTATAAAACATT 59.616 29.630 0.00 0.00 38.14 2.71
330 340 6.865726 TGAAAATGTGCAAGCGTATAAAACAT 59.134 30.769 0.00 0.00 0.00 2.71
331 341 6.209361 TGAAAATGTGCAAGCGTATAAAACA 58.791 32.000 0.00 0.00 0.00 2.83
332 342 6.667386 GCTGAAAATGTGCAAGCGTATAAAAC 60.667 38.462 0.00 0.00 0.00 2.43
333 343 5.344665 GCTGAAAATGTGCAAGCGTATAAAA 59.655 36.000 0.00 0.00 0.00 1.52
334 344 4.856487 GCTGAAAATGTGCAAGCGTATAAA 59.144 37.500 0.00 0.00 0.00 1.40
335 345 4.083057 TGCTGAAAATGTGCAAGCGTATAA 60.083 37.500 0.00 0.00 33.48 0.98
336 346 3.438434 TGCTGAAAATGTGCAAGCGTATA 59.562 39.130 0.00 0.00 33.48 1.47
337 347 2.228582 TGCTGAAAATGTGCAAGCGTAT 59.771 40.909 0.00 0.00 33.48 3.06
338 348 1.606189 TGCTGAAAATGTGCAAGCGTA 59.394 42.857 0.00 0.00 33.48 4.42
339 349 0.385029 TGCTGAAAATGTGCAAGCGT 59.615 45.000 0.00 0.00 33.48 5.07
340 350 0.780002 GTGCTGAAAATGTGCAAGCG 59.220 50.000 0.00 0.00 38.50 4.68
341 351 0.780002 CGTGCTGAAAATGTGCAAGC 59.220 50.000 0.00 0.00 38.50 4.01
342 352 2.404265 TCGTGCTGAAAATGTGCAAG 57.596 45.000 0.00 0.00 38.50 4.01
343 353 2.859526 TTCGTGCTGAAAATGTGCAA 57.140 40.000 0.00 0.00 38.50 4.08
344 354 2.859526 TTTCGTGCTGAAAATGTGCA 57.140 40.000 2.76 0.00 43.46 4.57
352 362 3.454042 CGAATGTCATTTCGTGCTGAA 57.546 42.857 0.00 0.00 42.63 3.02
360 370 3.163594 CGCCTTTCACGAATGTCATTTC 58.836 45.455 0.00 0.00 0.00 2.17
361 371 2.552315 ACGCCTTTCACGAATGTCATTT 59.448 40.909 0.00 0.00 0.00 2.32
362 372 2.095768 CACGCCTTTCACGAATGTCATT 60.096 45.455 0.00 0.00 0.00 2.57
363 373 1.464608 CACGCCTTTCACGAATGTCAT 59.535 47.619 0.00 0.00 0.00 3.06
364 374 0.865111 CACGCCTTTCACGAATGTCA 59.135 50.000 0.00 0.00 0.00 3.58
365 375 0.165944 CCACGCCTTTCACGAATGTC 59.834 55.000 0.00 0.00 0.00 3.06
366 376 1.852067 GCCACGCCTTTCACGAATGT 61.852 55.000 0.00 0.00 0.00 2.71
367 377 1.154225 GCCACGCCTTTCACGAATG 60.154 57.895 0.00 0.00 0.00 2.67
368 378 2.677003 CGCCACGCCTTTCACGAAT 61.677 57.895 0.00 0.00 0.00 3.34
369 379 3.342627 CGCCACGCCTTTCACGAA 61.343 61.111 0.00 0.00 0.00 3.85
370 380 3.793775 TTCGCCACGCCTTTCACGA 62.794 57.895 0.00 0.00 0.00 4.35
371 381 2.381665 TTTTCGCCACGCCTTTCACG 62.382 55.000 0.00 0.00 0.00 4.35
372 382 0.248702 TTTTTCGCCACGCCTTTCAC 60.249 50.000 0.00 0.00 0.00 3.18
373 383 2.107705 TTTTTCGCCACGCCTTTCA 58.892 47.368 0.00 0.00 0.00 2.69
390 400 6.418523 CGTTTTAGAGTGCCGGTTTTATTTTT 59.581 34.615 1.90 0.00 0.00 1.94
391 401 5.916320 CGTTTTAGAGTGCCGGTTTTATTTT 59.084 36.000 1.90 0.00 0.00 1.82
392 402 5.008911 ACGTTTTAGAGTGCCGGTTTTATTT 59.991 36.000 1.90 0.00 0.00 1.40
393 403 4.516321 ACGTTTTAGAGTGCCGGTTTTATT 59.484 37.500 1.90 0.00 0.00 1.40
394 404 4.067192 ACGTTTTAGAGTGCCGGTTTTAT 58.933 39.130 1.90 0.00 0.00 1.40
395 405 3.248125 CACGTTTTAGAGTGCCGGTTTTA 59.752 43.478 1.90 0.00 0.00 1.52
396 406 2.032426 CACGTTTTAGAGTGCCGGTTTT 59.968 45.455 1.90 0.00 0.00 2.43
397 407 1.600485 CACGTTTTAGAGTGCCGGTTT 59.400 47.619 1.90 0.00 0.00 3.27
398 408 1.223187 CACGTTTTAGAGTGCCGGTT 58.777 50.000 1.90 0.00 0.00 4.44
399 409 0.105408 ACACGTTTTAGAGTGCCGGT 59.895 50.000 1.90 0.00 41.72 5.28
400 410 1.193874 GAACACGTTTTAGAGTGCCGG 59.806 52.381 0.00 0.00 41.72 6.13
401 411 1.862201 TGAACACGTTTTAGAGTGCCG 59.138 47.619 0.00 0.00 41.72 5.69
402 412 3.955771 TTGAACACGTTTTAGAGTGCC 57.044 42.857 0.00 0.00 41.72 5.01
403 413 5.329493 AGTTTTGAACACGTTTTAGAGTGC 58.671 37.500 0.00 0.00 41.72 4.40
404 414 7.958567 TGTTAGTTTTGAACACGTTTTAGAGTG 59.041 33.333 0.00 0.00 43.46 3.51
405 415 8.031848 TGTTAGTTTTGAACACGTTTTAGAGT 57.968 30.769 0.00 0.00 31.92 3.24
406 416 9.498307 AATGTTAGTTTTGAACACGTTTTAGAG 57.502 29.630 0.00 0.00 39.51 2.43
407 417 9.843334 AAATGTTAGTTTTGAACACGTTTTAGA 57.157 25.926 0.00 0.00 39.51 2.10
454 464 4.714308 ACATTTGTGGAAGTCAGGGAAAAA 59.286 37.500 0.00 0.00 0.00 1.94
455 465 4.285863 ACATTTGTGGAAGTCAGGGAAAA 58.714 39.130 0.00 0.00 0.00 2.29
456 466 3.888930 GACATTTGTGGAAGTCAGGGAAA 59.111 43.478 0.00 0.00 0.00 3.13
457 467 3.117701 TGACATTTGTGGAAGTCAGGGAA 60.118 43.478 0.00 0.00 36.20 3.97
458 468 2.441375 TGACATTTGTGGAAGTCAGGGA 59.559 45.455 0.00 0.00 36.20 4.20
459 469 2.862541 TGACATTTGTGGAAGTCAGGG 58.137 47.619 0.00 0.00 36.20 4.45
460 470 5.458041 AAATGACATTTGTGGAAGTCAGG 57.542 39.130 12.62 0.00 43.39 3.86
461 471 5.149273 CGAAATGACATTTGTGGAAGTCAG 58.851 41.667 18.00 0.00 43.39 3.51
462 472 4.578516 ACGAAATGACATTTGTGGAAGTCA 59.421 37.500 18.00 0.00 44.16 3.41
463 473 4.911610 CACGAAATGACATTTGTGGAAGTC 59.088 41.667 18.00 0.56 32.60 3.01
464 474 4.792704 GCACGAAATGACATTTGTGGAAGT 60.793 41.667 26.70 13.98 34.67 3.01
465 475 3.670055 GCACGAAATGACATTTGTGGAAG 59.330 43.478 26.70 13.94 34.67 3.46
466 476 3.317711 AGCACGAAATGACATTTGTGGAA 59.682 39.130 26.70 0.00 34.67 3.53
467 477 2.884012 AGCACGAAATGACATTTGTGGA 59.116 40.909 26.70 0.00 34.67 4.02
468 478 2.981805 CAGCACGAAATGACATTTGTGG 59.018 45.455 26.70 16.82 34.67 4.17
469 479 3.887741 TCAGCACGAAATGACATTTGTG 58.112 40.909 24.22 24.22 35.90 3.33
470 480 4.566545 TTCAGCACGAAATGACATTTGT 57.433 36.364 18.00 12.69 31.47 2.83
481 491 4.926244 TGCTTGTAAAATTTCAGCACGAA 58.074 34.783 9.19 0.00 0.00 3.85
482 492 4.560136 TGCTTGTAAAATTTCAGCACGA 57.440 36.364 9.19 0.00 0.00 4.35
483 493 4.433283 GCATGCTTGTAAAATTTCAGCACG 60.433 41.667 11.37 8.91 33.53 5.34
484 494 4.448395 TGCATGCTTGTAAAATTTCAGCAC 59.552 37.500 20.33 6.12 33.53 4.40
485 495 4.629092 TGCATGCTTGTAAAATTTCAGCA 58.371 34.783 20.33 13.56 35.24 4.41
486 496 5.594724 TTGCATGCTTGTAAAATTTCAGC 57.405 34.783 20.33 0.00 0.00 4.26
487 497 7.408123 TGTTTTGCATGCTTGTAAAATTTCAG 58.592 30.769 24.16 0.00 45.19 3.02
488 498 7.312657 TGTTTTGCATGCTTGTAAAATTTCA 57.687 28.000 24.16 17.25 45.19 2.69
489 499 8.785468 AATGTTTTGCATGCTTGTAAAATTTC 57.215 26.923 24.16 15.49 45.19 2.17
490 500 9.021863 CAAATGTTTTGCATGCTTGTAAAATTT 57.978 25.926 24.16 19.39 45.19 1.82
491 501 8.189460 ACAAATGTTTTGCATGCTTGTAAAATT 58.811 25.926 24.16 15.92 45.19 1.82
492 502 7.705214 ACAAATGTTTTGCATGCTTGTAAAAT 58.295 26.923 24.16 11.97 45.19 1.82
493 503 7.081526 ACAAATGTTTTGCATGCTTGTAAAA 57.918 28.000 20.33 19.76 42.66 1.52
494 504 6.314648 TGACAAATGTTTTGCATGCTTGTAAA 59.685 30.769 20.33 11.02 38.15 2.01
495 505 5.814188 TGACAAATGTTTTGCATGCTTGTAA 59.186 32.000 20.33 9.31 38.15 2.41
496 506 5.354767 TGACAAATGTTTTGCATGCTTGTA 58.645 33.333 20.33 1.93 38.15 2.41
497 507 4.190001 TGACAAATGTTTTGCATGCTTGT 58.810 34.783 20.33 18.01 39.74 3.16
498 508 4.797693 TGACAAATGTTTTGCATGCTTG 57.202 36.364 20.33 14.89 37.96 4.01
499 509 5.354792 ACTTTGACAAATGTTTTGCATGCTT 59.645 32.000 20.33 0.00 37.96 3.91
500 510 4.877251 ACTTTGACAAATGTTTTGCATGCT 59.123 33.333 20.33 0.00 37.96 3.79
501 511 5.159399 ACTTTGACAAATGTTTTGCATGC 57.841 34.783 11.82 11.82 37.96 4.06
502 512 7.125113 GGTAACTTTGACAAATGTTTTGCATG 58.875 34.615 15.92 0.00 37.96 4.06
503 513 6.019156 CGGTAACTTTGACAAATGTTTTGCAT 60.019 34.615 15.92 0.00 40.03 3.96
504 514 5.289675 CGGTAACTTTGACAAATGTTTTGCA 59.710 36.000 15.92 0.00 35.78 4.08
505 515 5.289917 ACGGTAACTTTGACAAATGTTTTGC 59.710 36.000 15.92 6.31 35.78 3.68
506 516 6.879188 ACGGTAACTTTGACAAATGTTTTG 57.121 33.333 15.92 0.00 35.78 2.44
571 581 9.897744 CTCAAATGCTTTCTCATAAACAGTAAA 57.102 29.630 0.00 0.00 0.00 2.01
572 582 8.023128 GCTCAAATGCTTTCTCATAAACAGTAA 58.977 33.333 0.00 0.00 0.00 2.24
573 583 7.391554 AGCTCAAATGCTTTCTCATAAACAGTA 59.608 33.333 0.00 0.00 40.93 2.74
574 584 6.208204 AGCTCAAATGCTTTCTCATAAACAGT 59.792 34.615 0.00 0.00 40.93 3.55
575 585 6.618811 AGCTCAAATGCTTTCTCATAAACAG 58.381 36.000 0.00 0.00 40.93 3.16
576 586 6.207221 TGAGCTCAAATGCTTTCTCATAAACA 59.793 34.615 15.67 0.00 44.17 2.83
577 587 6.615088 TGAGCTCAAATGCTTTCTCATAAAC 58.385 36.000 15.67 0.00 44.17 2.01
578 588 6.127814 CCTGAGCTCAAATGCTTTCTCATAAA 60.128 38.462 18.85 0.00 44.17 1.40
579 589 5.356190 CCTGAGCTCAAATGCTTTCTCATAA 59.644 40.000 18.85 0.00 44.17 1.90
580 590 4.880120 CCTGAGCTCAAATGCTTTCTCATA 59.120 41.667 18.85 0.00 44.17 2.15
581 591 3.695060 CCTGAGCTCAAATGCTTTCTCAT 59.305 43.478 18.85 0.00 44.17 2.90
582 592 3.079578 CCTGAGCTCAAATGCTTTCTCA 58.920 45.455 18.85 2.72 44.17 3.27
583 593 3.341823 TCCTGAGCTCAAATGCTTTCTC 58.658 45.455 18.85 0.00 44.17 2.87
584 594 3.345414 CTCCTGAGCTCAAATGCTTTCT 58.655 45.455 18.85 0.00 44.17 2.52
585 595 3.761311 CTCCTGAGCTCAAATGCTTTC 57.239 47.619 18.85 0.00 44.17 2.62
603 613 6.107901 AGAAAGGACATGGAGTATATGCTC 57.892 41.667 12.04 12.04 34.89 4.26
604 614 7.805083 ATAGAAAGGACATGGAGTATATGCT 57.195 36.000 0.00 0.00 0.00 3.79
605 615 9.757227 GATATAGAAAGGACATGGAGTATATGC 57.243 37.037 0.00 0.00 0.00 3.14
610 620 9.742144 GAGTAGATATAGAAAGGACATGGAGTA 57.258 37.037 0.00 0.00 0.00 2.59
611 621 7.672239 GGAGTAGATATAGAAAGGACATGGAGT 59.328 40.741 0.00 0.00 0.00 3.85
612 622 7.893302 AGGAGTAGATATAGAAAGGACATGGAG 59.107 40.741 0.00 0.00 0.00 3.86
613 623 7.770662 AGGAGTAGATATAGAAAGGACATGGA 58.229 38.462 0.00 0.00 0.00 3.41
614 624 7.671819 TGAGGAGTAGATATAGAAAGGACATGG 59.328 40.741 0.00 0.00 0.00 3.66
615 625 8.519526 GTGAGGAGTAGATATAGAAAGGACATG 58.480 40.741 0.00 0.00 0.00 3.21
616 626 8.452868 AGTGAGGAGTAGATATAGAAAGGACAT 58.547 37.037 0.00 0.00 0.00 3.06
617 627 7.817440 AGTGAGGAGTAGATATAGAAAGGACA 58.183 38.462 0.00 0.00 0.00 4.02
618 628 7.392393 GGAGTGAGGAGTAGATATAGAAAGGAC 59.608 44.444 0.00 0.00 0.00 3.85
619 629 7.463431 GGAGTGAGGAGTAGATATAGAAAGGA 58.537 42.308 0.00 0.00 0.00 3.36
620 630 6.373216 CGGAGTGAGGAGTAGATATAGAAAGG 59.627 46.154 0.00 0.00 0.00 3.11
621 631 6.938030 ACGGAGTGAGGAGTAGATATAGAAAG 59.062 42.308 0.00 0.00 42.51 2.62
622 632 6.839454 ACGGAGTGAGGAGTAGATATAGAAA 58.161 40.000 0.00 0.00 42.51 2.52
623 633 6.436738 ACGGAGTGAGGAGTAGATATAGAA 57.563 41.667 0.00 0.00 42.51 2.10
686 696 5.117592 CCGTTCGATAGTGTAAGACGTTTTT 59.882 40.000 0.00 0.00 37.40 1.94
687 697 4.618489 CCGTTCGATAGTGTAAGACGTTTT 59.382 41.667 0.00 0.00 37.40 2.43
688 698 4.083324 TCCGTTCGATAGTGTAAGACGTTT 60.083 41.667 0.00 0.00 37.40 3.60
689 699 3.436704 TCCGTTCGATAGTGTAAGACGTT 59.563 43.478 0.00 0.00 37.40 3.99
690 700 3.002791 TCCGTTCGATAGTGTAAGACGT 58.997 45.455 0.00 0.00 37.40 4.34
691 701 3.605406 CTCCGTTCGATAGTGTAAGACG 58.395 50.000 0.00 0.00 37.40 4.18
692 702 3.181503 TGCTCCGTTCGATAGTGTAAGAC 60.182 47.826 0.00 0.00 37.40 3.01
693 703 3.011818 TGCTCCGTTCGATAGTGTAAGA 58.988 45.455 0.00 0.00 37.40 2.10
694 704 3.416119 TGCTCCGTTCGATAGTGTAAG 57.584 47.619 0.00 0.00 37.40 2.34
695 705 3.853831 TTGCTCCGTTCGATAGTGTAA 57.146 42.857 0.00 0.00 37.40 2.41
696 706 3.379057 TCATTGCTCCGTTCGATAGTGTA 59.621 43.478 0.00 0.00 37.40 2.90
697 707 2.165641 TCATTGCTCCGTTCGATAGTGT 59.834 45.455 0.00 0.00 37.40 3.55
698 708 2.791560 CTCATTGCTCCGTTCGATAGTG 59.208 50.000 0.00 0.00 37.40 2.74
699 709 2.427453 ACTCATTGCTCCGTTCGATAGT 59.573 45.455 0.00 0.00 37.40 2.12
700 710 3.085443 ACTCATTGCTCCGTTCGATAG 57.915 47.619 0.00 0.00 0.00 2.08
701 711 3.630769 ACTACTCATTGCTCCGTTCGATA 59.369 43.478 0.00 0.00 0.00 2.92
702 712 2.427453 ACTACTCATTGCTCCGTTCGAT 59.573 45.455 0.00 0.00 0.00 3.59
703 713 1.816835 ACTACTCATTGCTCCGTTCGA 59.183 47.619 0.00 0.00 0.00 3.71
704 714 2.279582 ACTACTCATTGCTCCGTTCG 57.720 50.000 0.00 0.00 0.00 3.95
705 715 4.106197 CACTACTACTCATTGCTCCGTTC 58.894 47.826 0.00 0.00 0.00 3.95
706 716 3.119101 CCACTACTACTCATTGCTCCGTT 60.119 47.826 0.00 0.00 0.00 4.44
707 717 2.427453 CCACTACTACTCATTGCTCCGT 59.573 50.000 0.00 0.00 0.00 4.69
708 718 2.223829 CCCACTACTACTCATTGCTCCG 60.224 54.545 0.00 0.00 0.00 4.63
709 719 2.766828 ACCCACTACTACTCATTGCTCC 59.233 50.000 0.00 0.00 0.00 4.70
710 720 4.500035 GCTACCCACTACTACTCATTGCTC 60.500 50.000 0.00 0.00 0.00 4.26
711 721 3.385111 GCTACCCACTACTACTCATTGCT 59.615 47.826 0.00 0.00 0.00 3.91
712 722 3.132289 TGCTACCCACTACTACTCATTGC 59.868 47.826 0.00 0.00 0.00 3.56
713 723 5.109903 GTTGCTACCCACTACTACTCATTG 58.890 45.833 0.00 0.00 0.00 2.82
714 724 4.775780 TGTTGCTACCCACTACTACTCATT 59.224 41.667 0.00 0.00 0.00 2.57
715 725 4.350245 TGTTGCTACCCACTACTACTCAT 58.650 43.478 0.00 0.00 0.00 2.90
716 726 3.770046 TGTTGCTACCCACTACTACTCA 58.230 45.455 0.00 0.00 0.00 3.41
717 727 4.683832 CATGTTGCTACCCACTACTACTC 58.316 47.826 0.00 0.00 0.00 2.59
718 728 3.118738 GCATGTTGCTACCCACTACTACT 60.119 47.826 0.00 0.00 40.96 2.57
719 729 3.195661 GCATGTTGCTACCCACTACTAC 58.804 50.000 0.00 0.00 40.96 2.73
720 730 2.169769 GGCATGTTGCTACCCACTACTA 59.830 50.000 0.00 0.00 44.28 1.82
721 731 1.065418 GGCATGTTGCTACCCACTACT 60.065 52.381 0.00 0.00 44.28 2.57
722 732 1.339631 TGGCATGTTGCTACCCACTAC 60.340 52.381 0.00 0.00 44.28 2.73
723 733 0.988063 TGGCATGTTGCTACCCACTA 59.012 50.000 0.00 0.00 44.28 2.74
724 734 0.332632 ATGGCATGTTGCTACCCACT 59.667 50.000 0.00 0.00 44.28 4.00
725 735 1.134946 GAATGGCATGTTGCTACCCAC 59.865 52.381 0.00 0.00 44.28 4.61
726 736 1.005805 AGAATGGCATGTTGCTACCCA 59.994 47.619 0.00 0.00 44.28 4.51
727 737 1.678101 GAGAATGGCATGTTGCTACCC 59.322 52.381 0.00 0.00 44.28 3.69
728 738 2.357009 CAGAGAATGGCATGTTGCTACC 59.643 50.000 0.00 0.00 44.28 3.18
738 748 1.078918 CGGCAGACAGAGAATGGCA 60.079 57.895 0.00 0.00 40.68 4.92
744 754 0.904865 ACCAATCCGGCAGACAGAGA 60.905 55.000 0.00 0.00 39.03 3.10
779 794 1.423921 AGCTTTCCTTTTCTTCCCCGA 59.576 47.619 0.00 0.00 0.00 5.14
800 815 1.740718 GCAAGAGGGAAGCTAACGAGG 60.741 57.143 0.00 0.00 0.00 4.63
849 868 4.748798 AGGGAGGGAGGCAGGGTG 62.749 72.222 0.00 0.00 0.00 4.61
850 869 4.423209 GAGGGAGGGAGGCAGGGT 62.423 72.222 0.00 0.00 0.00 4.34
854 873 4.095400 GAGGGAGGGAGGGAGGCA 62.095 72.222 0.00 0.00 0.00 4.75
857 876 3.039526 AGGGAGGGAGGGAGGGAG 61.040 72.222 0.00 0.00 0.00 4.30
858 877 3.036959 GAGGGAGGGAGGGAGGGA 61.037 72.222 0.00 0.00 0.00 4.20
859 878 4.179599 GGAGGGAGGGAGGGAGGG 62.180 77.778 0.00 0.00 0.00 4.30
860 879 4.179599 GGGAGGGAGGGAGGGAGG 62.180 77.778 0.00 0.00 0.00 4.30
861 880 1.705450 TAGGGAGGGAGGGAGGGAG 60.705 68.421 0.00 0.00 0.00 4.30
862 881 2.019272 GTAGGGAGGGAGGGAGGGA 61.019 68.421 0.00 0.00 0.00 4.20
863 882 1.679969 ATGTAGGGAGGGAGGGAGGG 61.680 65.000 0.00 0.00 0.00 4.30
864 883 1.167943 TATGTAGGGAGGGAGGGAGG 58.832 60.000 0.00 0.00 0.00 4.30
865 884 3.336997 TGTATATGTAGGGAGGGAGGGAG 59.663 52.174 0.00 0.00 0.00 4.30
866 885 3.351694 TGTATATGTAGGGAGGGAGGGA 58.648 50.000 0.00 0.00 0.00 4.20
867 886 3.847042 TGTATATGTAGGGAGGGAGGG 57.153 52.381 0.00 0.00 0.00 4.30
868 887 5.305644 GCATATGTATATGTAGGGAGGGAGG 59.694 48.000 12.14 0.00 41.63 4.30
869 888 5.010112 CGCATATGTATATGTAGGGAGGGAG 59.990 48.000 12.14 0.00 41.63 4.30
875 894 3.067601 TCGCCGCATATGTATATGTAGGG 59.932 47.826 19.85 15.69 41.63 3.53
914 933 0.752658 TGGTGACTGTGTGAGGTGAG 59.247 55.000 0.00 0.00 0.00 3.51
925 944 0.251354 ATGGTAGCAGCTGGTGACTG 59.749 55.000 28.10 0.00 38.22 3.51
926 945 0.539051 GATGGTAGCAGCTGGTGACT 59.461 55.000 28.10 12.51 0.00 3.41
937 956 4.640201 TGGATTGTTTAGCAAGATGGTAGC 59.360 41.667 0.00 0.00 40.86 3.58
943 962 5.358160 GGTAGCTTGGATTGTTTAGCAAGAT 59.642 40.000 0.00 0.00 40.86 2.40
951 970 5.067954 ACGTTTAGGTAGCTTGGATTGTTT 58.932 37.500 0.00 0.00 0.00 2.83
966 985 3.194116 TGGCTCACTTAGGTACGTTTAGG 59.806 47.826 0.00 0.00 0.00 2.69
970 989 2.230750 GACTGGCTCACTTAGGTACGTT 59.769 50.000 0.00 0.00 0.00 3.99
971 990 1.817447 GACTGGCTCACTTAGGTACGT 59.183 52.381 0.00 0.00 0.00 3.57
977 996 1.671328 TCGATCGACTGGCTCACTTAG 59.329 52.381 15.15 0.00 0.00 2.18
979 998 0.453793 CTCGATCGACTGGCTCACTT 59.546 55.000 15.15 0.00 0.00 3.16
980 999 1.999071 GCTCGATCGACTGGCTCACT 61.999 60.000 15.15 0.00 0.00 3.41
988 1007 2.026734 CGCCATGCTCGATCGACT 59.973 61.111 15.15 0.00 0.00 4.18
989 1008 2.278857 ACGCCATGCTCGATCGAC 60.279 61.111 15.15 11.86 0.00 4.20
991 1010 3.390017 CGACGCCATGCTCGATCG 61.390 66.667 9.36 9.36 33.54 3.69
1185 1222 2.231478 GAGAAGGATCTCGTTGGTGTGA 59.769 50.000 0.00 0.00 42.54 3.58
1203 1240 3.906720 AGCTTAATTACCTTGCCGAGA 57.093 42.857 0.00 0.00 0.00 4.04
1236 1273 6.094325 CCGTAGAGTAGAGATCAAACAGTCTT 59.906 42.308 0.00 0.00 0.00 3.01
1238 1275 5.585445 TCCGTAGAGTAGAGATCAAACAGTC 59.415 44.000 0.00 0.00 0.00 3.51
1241 1278 4.331992 CGTCCGTAGAGTAGAGATCAAACA 59.668 45.833 0.00 0.00 0.00 2.83
1254 1304 2.277373 GAGCGCACGTCCGTAGAG 60.277 66.667 11.47 0.00 0.00 2.43
1350 1408 2.927856 TCTCCCAAGAAGCCGCCA 60.928 61.111 0.00 0.00 0.00 5.69
1570 2552 4.069304 GTTTATCCACAGTAGCCACACAA 58.931 43.478 0.00 0.00 0.00 3.33
1585 2567 8.830580 TGTACTACTCGTAGTATGTGTTTATCC 58.169 37.037 17.19 4.50 46.57 2.59
1619 3417 9.355916 GCATGGATCTATCTATATAGTGGTACA 57.644 37.037 9.58 5.47 37.06 2.90
1632 3430 5.643421 AAACAAGGAGCATGGATCTATCT 57.357 39.130 0.00 0.00 0.00 1.98
1633 3431 6.319658 TGAAAAACAAGGAGCATGGATCTATC 59.680 38.462 0.00 0.00 0.00 2.08
1645 3443 4.082245 ACCGGCAATATGAAAAACAAGGAG 60.082 41.667 0.00 0.00 0.00 3.69
1646 3444 3.829601 ACCGGCAATATGAAAAACAAGGA 59.170 39.130 0.00 0.00 0.00 3.36
1647 3445 4.186856 ACCGGCAATATGAAAAACAAGG 57.813 40.909 0.00 0.00 0.00 3.61
1648 3446 7.644986 TTAAACCGGCAATATGAAAAACAAG 57.355 32.000 0.00 0.00 0.00 3.16
1656 3454 7.489757 GCAAAGTAAATTAAACCGGCAATATGA 59.510 33.333 0.00 0.00 0.00 2.15
1657 3455 7.276658 TGCAAAGTAAATTAAACCGGCAATATG 59.723 33.333 0.00 0.00 0.00 1.78
1658 3456 7.276878 GTGCAAAGTAAATTAAACCGGCAATAT 59.723 33.333 0.00 0.00 0.00 1.28
1659 3457 6.586844 GTGCAAAGTAAATTAAACCGGCAATA 59.413 34.615 0.00 0.00 0.00 1.90
1660 3458 5.407084 GTGCAAAGTAAATTAAACCGGCAAT 59.593 36.000 0.00 0.00 0.00 3.56
1661 3459 4.745620 GTGCAAAGTAAATTAAACCGGCAA 59.254 37.500 0.00 0.00 0.00 4.52
1662 3460 4.202121 TGTGCAAAGTAAATTAAACCGGCA 60.202 37.500 0.00 0.00 0.00 5.69
1663 3461 4.149221 GTGTGCAAAGTAAATTAAACCGGC 59.851 41.667 0.00 0.00 0.00 6.13
1664 3462 4.380382 CGTGTGCAAAGTAAATTAAACCGG 59.620 41.667 0.00 0.00 0.00 5.28
1665 3463 4.971220 ACGTGTGCAAAGTAAATTAAACCG 59.029 37.500 0.00 0.00 0.00 4.44
1666 3464 6.253942 ACAACGTGTGCAAAGTAAATTAAACC 59.746 34.615 0.00 0.00 0.00 3.27
1667 3465 7.212032 ACAACGTGTGCAAAGTAAATTAAAC 57.788 32.000 0.00 0.00 0.00 2.01
1668 3466 7.813852 AACAACGTGTGCAAAGTAAATTAAA 57.186 28.000 0.00 0.00 0.00 1.52
2064 3900 3.713764 AGCAGCTACCAGAATAGGTCAAT 59.286 43.478 0.00 0.00 42.06 2.57
2067 3904 3.828875 AAGCAGCTACCAGAATAGGTC 57.171 47.619 0.00 0.00 42.06 3.85
2070 3987 8.443953 AAAGAATTAAGCAGCTACCAGAATAG 57.556 34.615 0.00 0.00 0.00 1.73
2106 4023 8.486210 AGTTAGATGATTGTACATTAGAAGCCA 58.514 33.333 0.00 0.00 0.00 4.75
2108 4025 9.534565 TGAGTTAGATGATTGTACATTAGAAGC 57.465 33.333 0.00 0.00 0.00 3.86
2111 4028 9.987272 CCATGAGTTAGATGATTGTACATTAGA 57.013 33.333 0.00 0.00 0.00 2.10
2112 4029 9.770097 ACCATGAGTTAGATGATTGTACATTAG 57.230 33.333 0.00 0.00 0.00 1.73
2117 4039 6.051717 AGCACCATGAGTTAGATGATTGTAC 58.948 40.000 0.00 0.00 0.00 2.90
2119 4041 5.108187 AGCACCATGAGTTAGATGATTGT 57.892 39.130 0.00 0.00 0.00 2.71
2133 4055 6.201425 GCATTCCACAAATTATAAGCACCATG 59.799 38.462 0.00 0.00 0.00 3.66
2146 4068 3.896888 TGAAAGGTGAGCATTCCACAAAT 59.103 39.130 0.00 0.00 36.31 2.32
2158 5314 5.584649 TGTTTCTACACACTTGAAAGGTGAG 59.415 40.000 14.60 9.60 38.01 3.51
2162 5318 8.702163 AAAAATGTTTCTACACACTTGAAAGG 57.298 30.769 0.00 0.00 37.03 3.11
2252 5408 0.601046 TGTCAGTGAAAGAGCCAGCG 60.601 55.000 0.00 0.00 0.00 5.18
2254 5410 2.540265 ACTGTCAGTGAAAGAGCCAG 57.460 50.000 17.58 10.58 0.00 4.85
2273 5429 6.245408 AGGTAAAATCTGCAATGGTAGAACA 58.755 36.000 0.00 0.00 39.28 3.18
2281 5437 7.646922 GCTGAAATCTAGGTAAAATCTGCAATG 59.353 37.037 0.00 0.00 32.64 2.82
2289 5445 8.650143 TTCTTTGGCTGAAATCTAGGTAAAAT 57.350 30.769 0.00 0.00 0.00 1.82
2310 5466 4.948621 CAGGGCATTCTTCTCAAGATTCTT 59.051 41.667 0.00 0.00 37.38 2.52
2444 5600 9.480053 TTCTGATTGAAATTCTCCATTTTTGTC 57.520 29.630 0.00 0.00 35.02 3.18
2565 5721 7.504911 AGAATCCTTCCAAGTATTCATCATTGG 59.495 37.037 7.22 0.00 42.93 3.16
2566 5722 8.350722 CAGAATCCTTCCAAGTATTCATCATTG 58.649 37.037 7.22 0.00 34.80 2.82
2627 5783 6.109359 ACCAACAGCTAGCTAGTTTATTCAG 58.891 40.000 18.86 10.37 0.00 3.02
2674 5830 0.110823 GGTTCGTGCACTGCTAAACG 60.111 55.000 16.19 4.37 37.38 3.60
2793 5949 1.417890 GGACGATCTGTTCCATCCCAT 59.582 52.381 0.00 0.00 0.00 4.00
2802 5958 1.508632 CACAAACCGGACGATCTGTT 58.491 50.000 9.46 0.00 0.00 3.16
2838 5994 3.306917 TTTGCATAAGGAAGACGTCGA 57.693 42.857 10.46 0.00 0.00 4.20
2895 6051 3.691118 AGATGATTTTGTGCAGCGTACAT 59.309 39.130 0.00 0.00 0.00 2.29
2971 6128 6.042781 ACCAATGGTTAACTCTCAACTCACTA 59.957 38.462 0.00 0.00 27.29 2.74
3040 6197 1.542547 GGAGGTGTGGTCGTCAACATT 60.543 52.381 0.00 0.00 0.00 2.71
3077 6234 4.348495 AAGGCCTTCTCCGGGGGA 62.348 66.667 13.78 0.00 0.00 4.81
3079 6236 2.426305 AAACAAGGCCTTCTCCGGGG 62.426 60.000 17.29 4.96 0.00 5.73
3080 6237 1.074951 AAACAAGGCCTTCTCCGGG 59.925 57.895 17.29 5.79 0.00 5.73
3081 6238 1.244019 CCAAACAAGGCCTTCTCCGG 61.244 60.000 17.29 10.59 0.00 5.14
3082 6239 0.537371 ACCAAACAAGGCCTTCTCCG 60.537 55.000 17.29 7.06 0.00 4.63
3083 6240 1.704641 AACCAAACAAGGCCTTCTCC 58.295 50.000 17.29 0.00 0.00 3.71
3084 6241 4.640647 CCTATAACCAAACAAGGCCTTCTC 59.359 45.833 17.29 0.00 0.00 2.87
3142 6299 1.279496 AGCCATTCCTGCAGTAGTGA 58.721 50.000 13.81 0.00 0.00 3.41
3200 6357 2.602676 TTACAGCCCCTGGGAGCAC 61.603 63.158 22.78 7.70 35.51 4.40
3236 6394 1.547372 GGAGTAACGGCCAGTAACTCA 59.453 52.381 20.06 0.00 38.63 3.41
3237 6395 1.823610 AGGAGTAACGGCCAGTAACTC 59.176 52.381 2.24 9.67 36.64 3.01
3238 6396 1.934410 AGGAGTAACGGCCAGTAACT 58.066 50.000 2.24 0.00 0.00 2.24
3258 6416 2.296073 GGGTCAGTCTAGATCCCGAT 57.704 55.000 0.00 0.00 32.38 4.18
3274 6432 3.394606 AGACTAGTGTTGATTTGTGGGGT 59.605 43.478 0.00 0.00 0.00 4.95
3307 6465 1.495584 GCGCACGAGTGAGGACAAAA 61.496 55.000 0.30 0.00 0.00 2.44
3358 6516 4.219288 ACTCAGCTTGAAGCAATTTTAGGG 59.781 41.667 20.45 2.52 45.56 3.53
3395 6553 2.369394 GAGCCCATTCGGAATGAACTT 58.631 47.619 27.77 12.74 41.46 2.66
3456 8376 9.911788 CCTATGATAACATGGCTTAATAGGAAT 57.088 33.333 15.62 0.00 38.33 3.01
3458 8378 7.092444 CCCCTATGATAACATGGCTTAATAGGA 60.092 40.741 19.63 0.00 38.33 2.94
3473 8393 0.107831 GGTGTGCGCCCCTATGATAA 59.892 55.000 4.18 0.00 0.00 1.75
3502 8422 7.128331 CACTAATGTCATGTTAGCAATAGCAC 58.872 38.462 0.00 0.00 45.49 4.40
3506 8426 5.236263 CGCCACTAATGTCATGTTAGCAATA 59.764 40.000 0.00 0.00 33.47 1.90
3569 8489 7.609918 ACACTATGGCAGACAATAAACAATGTA 59.390 33.333 0.00 0.00 0.00 2.29
3573 8493 6.892658 AACACTATGGCAGACAATAAACAA 57.107 33.333 0.00 0.00 0.00 2.83
3585 8505 7.363705 CCATATTTCCTCAAAAACACTATGGCA 60.364 37.037 0.00 0.00 33.06 4.92
3590 8510 6.719370 ACTGCCATATTTCCTCAAAAACACTA 59.281 34.615 0.00 0.00 0.00 2.74


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.