Multiple sequence alignment - TraesCS5B01G522500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G522500 chr5B 100.000 4600 0 0 1 4600 684087241 684091840 0.000000e+00 8495.0
1 TraesCS5B01G522500 chr5B 92.823 627 27 5 3977 4600 118523992 118523381 0.000000e+00 893.0
2 TraesCS5B01G522500 chr5B 77.582 1365 250 42 2188 3536 684611176 684612500 0.000000e+00 774.0
3 TraesCS5B01G522500 chr5B 80.567 952 165 18 2188 3131 684690948 684691887 0.000000e+00 715.0
4 TraesCS5B01G522500 chr5B 78.075 748 155 8 2796 3537 684772393 684771649 9.010000e-127 464.0
5 TraesCS5B01G522500 chr5B 78.059 752 148 16 2796 3537 684745774 684746518 4.190000e-125 459.0
6 TraesCS5B01G522500 chr5B 100.000 28 0 0 1178 1205 557349148 557349175 8.000000e-03 52.8
7 TraesCS5B01G522500 chr5D 93.363 3541 136 37 491 3972 542107937 542111437 0.000000e+00 5145.0
8 TraesCS5B01G522500 chr5D 88.225 1673 133 32 1304 2963 542203568 542205189 0.000000e+00 1940.0
9 TraesCS5B01G522500 chr5D 78.034 1516 271 42 2036 3527 543223776 543225253 0.000000e+00 898.0
10 TraesCS5B01G522500 chr5D 82.388 670 102 9 2036 2700 543235971 543236629 1.860000e-158 569.0
11 TraesCS5B01G522500 chr5D 78.267 750 150 11 2796 3537 543272213 543272957 1.940000e-128 470.0
12 TraesCS5B01G522500 chr5D 89.153 378 36 2 3007 3384 542205190 542205562 2.510000e-127 466.0
13 TraesCS5B01G522500 chr5D 78.284 746 134 20 2798 3538 543236785 543237507 5.430000e-124 455.0
14 TraesCS5B01G522500 chr5D 76.326 811 149 30 2794 3588 543230627 543231410 1.200000e-105 394.0
15 TraesCS5B01G522500 chr5D 89.394 264 28 0 482 745 279293133 279292870 2.650000e-87 333.0
16 TraesCS5B01G522500 chr5D 85.915 213 18 10 728 933 542150493 542150700 2.790000e-52 217.0
17 TraesCS5B01G522500 chr5D 90.850 153 13 1 3974 4125 339711334 339711182 2.170000e-48 204.0
18 TraesCS5B01G522500 chr5D 86.286 175 24 0 3350 3524 543409382 543409208 1.690000e-44 191.0
19 TraesCS5B01G522500 chr5D 92.708 96 2 4 4138 4228 339711078 339710983 2.890000e-27 134.0
20 TraesCS5B01G522500 chr4A 77.887 1524 278 44 2036 3536 626022058 626020571 0.000000e+00 893.0
21 TraesCS5B01G522500 chr4A 78.042 1348 260 29 2214 3537 625960066 625958731 0.000000e+00 817.0
22 TraesCS5B01G522500 chr4A 78.384 1337 229 40 2215 3538 625995904 625994615 0.000000e+00 813.0
23 TraesCS5B01G522500 chr4A 82.101 676 102 14 2036 2704 626049103 626048440 1.120000e-155 560.0
24 TraesCS5B01G522500 chr4A 81.831 688 97 22 2035 2706 626013878 626013203 1.870000e-153 553.0
25 TraesCS5B01G522500 chr4A 81.735 657 56 35 3974 4600 213023993 213024615 1.490000e-134 490.0
26 TraesCS5B01G522500 chr4A 89.139 267 28 1 483 749 674616793 674617058 9.540000e-87 331.0
27 TraesCS5B01G522500 chr4A 90.171 234 21 2 1 232 626952262 626952029 2.080000e-78 303.0
28 TraesCS5B01G522500 chr4A 88.571 175 19 1 3350 3524 695979086 695978913 1.300000e-50 211.0
29 TraesCS5B01G522500 chr4A 86.709 158 21 0 3350 3507 625822949 625823106 4.730000e-40 176.0
30 TraesCS5B01G522500 chr4A 89.831 118 12 0 3215 3332 625822585 625822702 7.970000e-33 152.0
31 TraesCS5B01G522500 chr2B 87.729 546 37 18 3974 4509 691403603 691404128 1.090000e-170 610.0
32 TraesCS5B01G522500 chr3D 85.177 452 31 15 3974 4420 582737003 582736583 9.140000e-117 431.0
33 TraesCS5B01G522500 chr3D 89.219 269 29 0 482 750 40324783 40324515 2.050000e-88 337.0
34 TraesCS5B01G522500 chr3D 89.734 263 24 2 484 746 305497152 305497411 2.650000e-87 333.0
35 TraesCS5B01G522500 chr3D 88.298 282 22 5 4272 4550 571564583 571564856 1.230000e-85 327.0
36 TraesCS5B01G522500 chr3D 97.872 47 1 0 4554 4600 571564940 571564986 1.060000e-11 82.4
37 TraesCS5B01G522500 chr7A 88.822 331 34 2 4272 4600 111289043 111289372 1.990000e-108 403.0
38 TraesCS5B01G522500 chr7A 88.755 249 26 2 3974 4221 111256143 111256390 2.080000e-78 303.0
39 TraesCS5B01G522500 chr7A 86.452 155 16 5 3974 4125 52078062 52077910 1.020000e-36 165.0
40 TraesCS5B01G522500 chr7A 92.308 117 5 3 4359 4473 695833069 695833183 3.680000e-36 163.0
41 TraesCS5B01G522500 chr6B 89.630 270 26 2 477 745 40652271 40652539 4.410000e-90 342.0
42 TraesCS5B01G522500 chr6B 79.195 298 45 11 4227 4519 299703 299418 1.690000e-44 191.0
43 TraesCS5B01G522500 chr3A 89.773 264 26 1 482 744 739916964 739916701 2.050000e-88 337.0
44 TraesCS5B01G522500 chr3A 95.455 44 2 0 4557 4600 688491149 688491106 2.300000e-08 71.3
45 TraesCS5B01G522500 chr2D 89.773 264 26 1 483 745 380694552 380694289 2.050000e-88 337.0
46 TraesCS5B01G522500 chr2D 89.695 262 27 0 484 745 315858988 315859249 7.370000e-88 335.0
47 TraesCS5B01G522500 chr1A 89.655 261 27 0 484 744 451735714 451735974 2.650000e-87 333.0
48 TraesCS5B01G522500 chr1A 84.713 157 21 3 3971 4125 564612992 564613147 2.220000e-33 154.0
49 TraesCS5B01G522500 chr1A 91.954 87 7 0 2036 2122 591150048 591149962 6.250000e-24 122.0
50 TraesCS5B01G522500 chr7D 81.379 290 24 15 3974 4233 6495168 6494879 4.660000e-50 209.0
51 TraesCS5B01G522500 chr3B 95.455 132 4 2 4359 4489 806754272 806754402 4.660000e-50 209.0
52 TraesCS5B01G522500 chr3B 76.033 363 40 30 4135 4487 17906468 17906793 1.330000e-30 145.0
53 TraesCS5B01G522500 chrUn 83.756 197 11 8 4138 4330 30966363 30966184 2.850000e-37 167.0
54 TraesCS5B01G522500 chr5A 92.982 114 5 3 4359 4469 3971556 3971669 3.680000e-36 163.0
55 TraesCS5B01G522500 chr2A 92.982 114 5 3 4359 4469 116167950 116167837 3.680000e-36 163.0
56 TraesCS5B01G522500 chr1D 91.954 87 7 0 2036 2122 492642425 492642339 6.250000e-24 122.0
57 TraesCS5B01G522500 chr1B 91.954 87 7 0 2036 2122 685290675 685290589 6.250000e-24 122.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G522500 chr5B 684087241 684091840 4599 False 8495 8495 100.000 1 4600 1 chr5B.!!$F2 4599
1 TraesCS5B01G522500 chr5B 118523381 118523992 611 True 893 893 92.823 3977 4600 1 chr5B.!!$R1 623
2 TraesCS5B01G522500 chr5B 684611176 684612500 1324 False 774 774 77.582 2188 3536 1 chr5B.!!$F3 1348
3 TraesCS5B01G522500 chr5B 684690948 684691887 939 False 715 715 80.567 2188 3131 1 chr5B.!!$F4 943
4 TraesCS5B01G522500 chr5B 684771649 684772393 744 True 464 464 78.075 2796 3537 1 chr5B.!!$R2 741
5 TraesCS5B01G522500 chr5B 684745774 684746518 744 False 459 459 78.059 2796 3537 1 chr5B.!!$F5 741
6 TraesCS5B01G522500 chr5D 542107937 542111437 3500 False 5145 5145 93.363 491 3972 1 chr5D.!!$F1 3481
7 TraesCS5B01G522500 chr5D 542203568 542205562 1994 False 1203 1940 88.689 1304 3384 2 chr5D.!!$F6 2080
8 TraesCS5B01G522500 chr5D 543223776 543225253 1477 False 898 898 78.034 2036 3527 1 chr5D.!!$F3 1491
9 TraesCS5B01G522500 chr5D 543235971 543237507 1536 False 512 569 80.336 2036 3538 2 chr5D.!!$F7 1502
10 TraesCS5B01G522500 chr5D 543272213 543272957 744 False 470 470 78.267 2796 3537 1 chr5D.!!$F5 741
11 TraesCS5B01G522500 chr5D 543230627 543231410 783 False 394 394 76.326 2794 3588 1 chr5D.!!$F4 794
12 TraesCS5B01G522500 chr4A 626020571 626022058 1487 True 893 893 77.887 2036 3536 1 chr4A.!!$R4 1500
13 TraesCS5B01G522500 chr4A 625958731 625960066 1335 True 817 817 78.042 2214 3537 1 chr4A.!!$R1 1323
14 TraesCS5B01G522500 chr4A 625994615 625995904 1289 True 813 813 78.384 2215 3538 1 chr4A.!!$R2 1323
15 TraesCS5B01G522500 chr4A 626048440 626049103 663 True 560 560 82.101 2036 2704 1 chr4A.!!$R5 668
16 TraesCS5B01G522500 chr4A 626013203 626013878 675 True 553 553 81.831 2035 2706 1 chr4A.!!$R3 671
17 TraesCS5B01G522500 chr4A 213023993 213024615 622 False 490 490 81.735 3974 4600 1 chr4A.!!$F1 626
18 TraesCS5B01G522500 chr2B 691403603 691404128 525 False 610 610 87.729 3974 4509 1 chr2B.!!$F1 535

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
159 160 0.028770 TTGCAACGTTTCTTCTGCCG 59.971 50.0 0.00 0.0 33.78 5.69 F
335 336 0.031994 GCTTTGCACGGTTCCAACAT 59.968 50.0 0.00 0.0 0.00 2.71 F
480 481 0.096454 CATGTGAGCGTCTGCATGTG 59.904 55.0 0.00 0.0 46.23 3.21 F
1667 1709 0.101040 CGGCATGCGATTTGTTCCAT 59.899 50.0 12.44 0.0 0.00 3.41 F
1734 1776 0.524862 GAATGTGGTTGCAGCAGAGG 59.475 55.0 2.05 0.0 0.00 3.69 F
1887 1929 0.744874 TCGTGACCCCGATGATCTTC 59.255 55.0 0.00 0.0 30.63 2.87 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1805 1847 0.108186 TGTCAAGCCTAGTCATGCCG 60.108 55.000 0.00 0.0 0.00 5.69 R
1869 1911 0.459899 TGAAGATCATCGGGGTCACG 59.540 55.000 0.00 0.0 0.00 4.35 R
2031 2099 0.958091 TCACTGAATTTTGTGCCCGG 59.042 50.000 0.00 0.0 34.49 5.73 R
2496 2580 0.180642 TGGTTCACGGTTTGCCTGTA 59.819 50.000 0.00 0.0 0.00 2.74 R
2564 2648 1.022451 GGAAGTTGGTTGCCGCGATA 61.022 55.000 8.23 0.0 0.00 2.92 R
3860 4073 1.375523 GCTGACGTGGGTAACAGGG 60.376 63.158 0.00 0.0 39.23 4.45 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.046314 CCCGCAACCTCCGTGATT 60.046 61.111 0.00 0.00 0.00 2.57
18 19 1.219664 CCCGCAACCTCCGTGATTA 59.780 57.895 0.00 0.00 0.00 1.75
19 20 1.087771 CCCGCAACCTCCGTGATTAC 61.088 60.000 0.00 0.00 0.00 1.89
20 21 0.108329 CCGCAACCTCCGTGATTACT 60.108 55.000 0.00 0.00 0.00 2.24
21 22 0.999406 CGCAACCTCCGTGATTACTG 59.001 55.000 0.00 0.00 0.00 2.74
22 23 1.671850 CGCAACCTCCGTGATTACTGT 60.672 52.381 0.00 0.00 0.00 3.55
23 24 2.423577 GCAACCTCCGTGATTACTGTT 58.576 47.619 0.00 0.00 0.00 3.16
24 25 2.415512 GCAACCTCCGTGATTACTGTTC 59.584 50.000 0.00 0.00 0.00 3.18
25 26 3.864921 GCAACCTCCGTGATTACTGTTCT 60.865 47.826 0.00 0.00 0.00 3.01
26 27 3.870633 ACCTCCGTGATTACTGTTCTC 57.129 47.619 0.00 0.00 0.00 2.87
27 28 2.163815 ACCTCCGTGATTACTGTTCTCG 59.836 50.000 0.00 0.00 0.00 4.04
28 29 2.186076 CTCCGTGATTACTGTTCTCGC 58.814 52.381 0.00 0.00 0.00 5.03
29 30 1.816835 TCCGTGATTACTGTTCTCGCT 59.183 47.619 0.00 0.00 0.00 4.93
30 31 1.920574 CCGTGATTACTGTTCTCGCTG 59.079 52.381 0.00 0.00 0.00 5.18
31 32 2.596452 CGTGATTACTGTTCTCGCTGT 58.404 47.619 0.00 0.00 0.00 4.40
32 33 2.594654 CGTGATTACTGTTCTCGCTGTC 59.405 50.000 0.00 0.00 0.00 3.51
33 34 3.575630 GTGATTACTGTTCTCGCTGTCA 58.424 45.455 0.00 0.00 0.00 3.58
34 35 3.987868 GTGATTACTGTTCTCGCTGTCAA 59.012 43.478 0.00 0.00 0.00 3.18
35 36 4.627467 GTGATTACTGTTCTCGCTGTCAAT 59.373 41.667 0.00 0.00 0.00 2.57
36 37 4.864806 TGATTACTGTTCTCGCTGTCAATC 59.135 41.667 0.00 0.00 0.00 2.67
37 38 1.702886 ACTGTTCTCGCTGTCAATCG 58.297 50.000 0.00 0.00 0.00 3.34
38 39 1.000163 ACTGTTCTCGCTGTCAATCGT 60.000 47.619 0.00 0.00 0.00 3.73
39 40 2.228103 ACTGTTCTCGCTGTCAATCGTA 59.772 45.455 0.00 0.00 0.00 3.43
40 41 2.848887 CTGTTCTCGCTGTCAATCGTAG 59.151 50.000 0.00 0.00 0.00 3.51
41 42 2.228103 TGTTCTCGCTGTCAATCGTAGT 59.772 45.455 0.00 0.00 0.00 2.73
42 43 3.243336 GTTCTCGCTGTCAATCGTAGTT 58.757 45.455 0.00 0.00 0.00 2.24
43 44 3.570926 TCTCGCTGTCAATCGTAGTTT 57.429 42.857 0.00 0.00 0.00 2.66
44 45 3.499048 TCTCGCTGTCAATCGTAGTTTC 58.501 45.455 0.00 0.00 0.00 2.78
45 46 3.057806 TCTCGCTGTCAATCGTAGTTTCA 60.058 43.478 0.00 0.00 0.00 2.69
46 47 3.845178 TCGCTGTCAATCGTAGTTTCAT 58.155 40.909 0.00 0.00 0.00 2.57
47 48 3.612423 TCGCTGTCAATCGTAGTTTCATG 59.388 43.478 0.00 0.00 0.00 3.07
48 49 3.674423 GCTGTCAATCGTAGTTTCATGC 58.326 45.455 0.00 0.00 0.00 4.06
49 50 3.485877 GCTGTCAATCGTAGTTTCATGCC 60.486 47.826 0.00 0.00 0.00 4.40
50 51 3.006940 TGTCAATCGTAGTTTCATGCCC 58.993 45.455 0.00 0.00 0.00 5.36
51 52 2.030457 GTCAATCGTAGTTTCATGCCCG 59.970 50.000 0.00 0.00 0.00 6.13
52 53 2.006888 CAATCGTAGTTTCATGCCCGT 58.993 47.619 0.00 0.00 0.00 5.28
53 54 2.396590 ATCGTAGTTTCATGCCCGTT 57.603 45.000 0.00 0.00 0.00 4.44
54 55 1.434555 TCGTAGTTTCATGCCCGTTG 58.565 50.000 0.00 0.00 0.00 4.10
55 56 0.179200 CGTAGTTTCATGCCCGTTGC 60.179 55.000 0.00 0.00 41.77 4.17
56 57 0.170339 GTAGTTTCATGCCCGTTGCC 59.830 55.000 0.00 0.00 40.16 4.52
57 58 1.302383 TAGTTTCATGCCCGTTGCCG 61.302 55.000 0.00 0.00 40.16 5.69
58 59 2.596046 TTTCATGCCCGTTGCCGT 60.596 55.556 0.00 0.00 40.16 5.68
59 60 1.302591 TTTCATGCCCGTTGCCGTA 60.303 52.632 0.00 0.00 40.16 4.02
60 61 1.302383 TTTCATGCCCGTTGCCGTAG 61.302 55.000 0.00 0.00 40.16 3.51
61 62 2.435938 CATGCCCGTTGCCGTAGT 60.436 61.111 0.00 0.00 40.16 2.73
62 63 2.038269 CATGCCCGTTGCCGTAGTT 61.038 57.895 0.00 0.00 40.16 2.24
63 64 1.743995 ATGCCCGTTGCCGTAGTTC 60.744 57.895 0.00 0.00 40.16 3.01
64 65 3.122971 GCCCGTTGCCGTAGTTCC 61.123 66.667 0.00 0.00 0.00 3.62
65 66 2.435410 CCCGTTGCCGTAGTTCCC 60.435 66.667 0.00 0.00 0.00 3.97
66 67 2.435410 CCGTTGCCGTAGTTCCCC 60.435 66.667 0.00 0.00 0.00 4.81
67 68 2.812178 CGTTGCCGTAGTTCCCCG 60.812 66.667 0.00 0.00 0.00 5.73
68 69 2.344872 GTTGCCGTAGTTCCCCGT 59.655 61.111 0.00 0.00 0.00 5.28
69 70 1.301953 GTTGCCGTAGTTCCCCGTT 60.302 57.895 0.00 0.00 0.00 4.44
70 71 1.301874 TTGCCGTAGTTCCCCGTTG 60.302 57.895 0.00 0.00 0.00 4.10
71 72 2.042404 TTGCCGTAGTTCCCCGTTGT 62.042 55.000 0.00 0.00 0.00 3.32
72 73 1.739196 GCCGTAGTTCCCCGTTGTC 60.739 63.158 0.00 0.00 0.00 3.18
73 74 1.444895 CCGTAGTTCCCCGTTGTCG 60.445 63.158 0.00 0.00 0.00 4.35
74 75 1.286880 CGTAGTTCCCCGTTGTCGT 59.713 57.895 0.00 0.00 35.01 4.34
75 76 1.005294 CGTAGTTCCCCGTTGTCGTG 61.005 60.000 0.00 0.00 35.01 4.35
76 77 0.032540 GTAGTTCCCCGTTGTCGTGT 59.967 55.000 0.00 0.00 35.01 4.49
77 78 0.314935 TAGTTCCCCGTTGTCGTGTC 59.685 55.000 0.00 0.00 35.01 3.67
78 79 1.227321 GTTCCCCGTTGTCGTGTCA 60.227 57.895 0.00 0.00 35.01 3.58
79 80 1.227321 TTCCCCGTTGTCGTGTCAC 60.227 57.895 0.00 0.00 35.01 3.67
80 81 1.957765 TTCCCCGTTGTCGTGTCACA 61.958 55.000 3.42 0.00 35.01 3.58
81 82 1.954146 CCCCGTTGTCGTGTCACAG 60.954 63.158 3.42 0.00 35.01 3.66
82 83 2.594962 CCCGTTGTCGTGTCACAGC 61.595 63.158 3.42 0.00 35.01 4.40
83 84 2.594962 CCGTTGTCGTGTCACAGCC 61.595 63.158 3.42 0.00 35.01 4.85
84 85 2.594962 CGTTGTCGTGTCACAGCCC 61.595 63.158 3.42 0.00 0.00 5.19
85 86 1.227556 GTTGTCGTGTCACAGCCCT 60.228 57.895 3.42 0.00 0.00 5.19
86 87 1.069090 TTGTCGTGTCACAGCCCTC 59.931 57.895 3.42 0.00 0.00 4.30
87 88 2.430921 GTCGTGTCACAGCCCTCG 60.431 66.667 3.42 0.00 0.00 4.63
88 89 2.596338 TCGTGTCACAGCCCTCGA 60.596 61.111 3.42 0.00 0.00 4.04
89 90 2.197605 TCGTGTCACAGCCCTCGAA 61.198 57.895 3.42 0.00 0.00 3.71
90 91 2.022129 CGTGTCACAGCCCTCGAAC 61.022 63.158 3.42 0.00 0.00 3.95
91 92 1.668151 GTGTCACAGCCCTCGAACC 60.668 63.158 0.00 0.00 0.00 3.62
92 93 2.137528 TGTCACAGCCCTCGAACCA 61.138 57.895 0.00 0.00 0.00 3.67
93 94 1.296715 GTCACAGCCCTCGAACCAT 59.703 57.895 0.00 0.00 0.00 3.55
94 95 0.741221 GTCACAGCCCTCGAACCATC 60.741 60.000 0.00 0.00 0.00 3.51
105 106 2.315246 GAACCATCGATGCAGCTCC 58.685 57.895 20.25 1.80 0.00 4.70
106 107 0.179062 GAACCATCGATGCAGCTCCT 60.179 55.000 20.25 0.00 0.00 3.69
107 108 0.179062 AACCATCGATGCAGCTCCTC 60.179 55.000 20.25 0.00 0.00 3.71
108 109 1.664017 CCATCGATGCAGCTCCTCG 60.664 63.158 20.25 0.00 0.00 4.63
109 110 2.028778 ATCGATGCAGCTCCTCGC 59.971 61.111 0.00 0.00 39.57 5.03
110 111 3.512223 ATCGATGCAGCTCCTCGCC 62.512 63.158 0.00 0.00 40.39 5.54
111 112 4.218578 CGATGCAGCTCCTCGCCT 62.219 66.667 0.00 0.00 40.39 5.52
112 113 2.280052 GATGCAGCTCCTCGCCTC 60.280 66.667 0.00 0.00 40.39 4.70
113 114 3.805891 GATGCAGCTCCTCGCCTCC 62.806 68.421 0.00 0.00 40.39 4.30
116 117 4.200283 CAGCTCCTCGCCTCCGTC 62.200 72.222 0.00 0.00 40.39 4.79
123 124 4.758251 TCGCCTCCGTCGGTCGTA 62.758 66.667 11.88 2.21 37.94 3.43
124 125 3.580193 CGCCTCCGTCGGTCGTAT 61.580 66.667 11.88 0.00 37.94 3.06
125 126 2.803479 GCCTCCGTCGGTCGTATT 59.197 61.111 11.88 0.00 37.94 1.89
126 127 1.775039 CGCCTCCGTCGGTCGTATTA 61.775 60.000 11.88 0.00 37.94 0.98
127 128 0.381801 GCCTCCGTCGGTCGTATTAA 59.618 55.000 11.88 0.00 37.94 1.40
128 129 1.861605 GCCTCCGTCGGTCGTATTAAC 60.862 57.143 11.88 0.00 37.94 2.01
139 140 2.748461 CGTATTAACGGCCATGTTGG 57.252 50.000 2.24 0.00 45.50 3.77
140 141 2.011222 CGTATTAACGGCCATGTTGGT 58.989 47.619 2.24 0.00 45.50 3.67
141 142 2.420722 CGTATTAACGGCCATGTTGGTT 59.579 45.455 2.24 0.00 45.50 3.67
142 143 3.729462 CGTATTAACGGCCATGTTGGTTG 60.729 47.826 2.24 0.00 45.50 3.77
143 144 0.315568 TTAACGGCCATGTTGGTTGC 59.684 50.000 2.24 0.00 40.46 4.17
144 145 0.823769 TAACGGCCATGTTGGTTGCA 60.824 50.000 2.24 0.00 40.46 4.08
145 146 1.680522 AACGGCCATGTTGGTTGCAA 61.681 50.000 2.24 0.00 40.46 4.08
146 147 1.664333 CGGCCATGTTGGTTGCAAC 60.664 57.895 21.59 21.59 40.46 4.17
147 148 1.664333 GGCCATGTTGGTTGCAACG 60.664 57.895 22.67 8.61 40.46 4.10
148 149 1.067250 GCCATGTTGGTTGCAACGT 59.933 52.632 22.67 0.00 40.46 3.99
149 150 0.529555 GCCATGTTGGTTGCAACGTT 60.530 50.000 22.67 0.00 40.46 3.99
150 151 1.933247 CCATGTTGGTTGCAACGTTT 58.067 45.000 22.67 3.63 37.86 3.60
151 152 1.857837 CCATGTTGGTTGCAACGTTTC 59.142 47.619 22.67 9.84 37.86 2.78
152 153 2.481104 CCATGTTGGTTGCAACGTTTCT 60.481 45.455 22.67 5.23 37.86 2.52
153 154 3.186119 CATGTTGGTTGCAACGTTTCTT 58.814 40.909 22.67 8.83 37.86 2.52
154 155 2.869897 TGTTGGTTGCAACGTTTCTTC 58.130 42.857 22.67 8.04 37.86 2.87
155 156 2.490115 TGTTGGTTGCAACGTTTCTTCT 59.510 40.909 22.67 0.00 37.86 2.85
156 157 2.842208 TGGTTGCAACGTTTCTTCTG 57.158 45.000 22.67 0.00 0.00 3.02
157 158 1.202245 TGGTTGCAACGTTTCTTCTGC 60.202 47.619 22.67 0.00 35.32 4.26
158 159 1.477105 GTTGCAACGTTTCTTCTGCC 58.523 50.000 14.90 0.00 33.78 4.85
159 160 0.028770 TTGCAACGTTTCTTCTGCCG 59.971 50.000 0.00 0.00 33.78 5.69
160 161 0.812014 TGCAACGTTTCTTCTGCCGA 60.812 50.000 0.00 0.00 33.78 5.54
161 162 0.517316 GCAACGTTTCTTCTGCCGAT 59.483 50.000 0.00 0.00 0.00 4.18
162 163 1.069227 GCAACGTTTCTTCTGCCGATT 60.069 47.619 0.00 0.00 0.00 3.34
163 164 2.574322 CAACGTTTCTTCTGCCGATTG 58.426 47.619 0.00 0.00 0.00 2.67
164 165 0.517316 ACGTTTCTTCTGCCGATTGC 59.483 50.000 0.00 0.00 41.77 3.56
173 174 4.173971 GCCGATTGCAGCTTTTGG 57.826 55.556 0.00 0.00 40.77 3.28
174 175 1.290009 GCCGATTGCAGCTTTTGGT 59.710 52.632 0.00 0.00 40.77 3.67
175 176 0.733909 GCCGATTGCAGCTTTTGGTC 60.734 55.000 0.00 0.00 40.77 4.02
176 177 0.597568 CCGATTGCAGCTTTTGGTCA 59.402 50.000 0.00 0.00 0.00 4.02
177 178 1.203052 CCGATTGCAGCTTTTGGTCAT 59.797 47.619 0.00 0.00 0.00 3.06
178 179 2.523015 CGATTGCAGCTTTTGGTCATC 58.477 47.619 0.00 0.00 0.00 2.92
179 180 2.095110 CGATTGCAGCTTTTGGTCATCA 60.095 45.455 0.00 0.00 0.00 3.07
180 181 2.798976 TTGCAGCTTTTGGTCATCAC 57.201 45.000 0.00 0.00 0.00 3.06
181 182 0.592637 TGCAGCTTTTGGTCATCACG 59.407 50.000 0.00 0.00 0.00 4.35
182 183 0.730494 GCAGCTTTTGGTCATCACGC 60.730 55.000 0.00 0.00 0.00 5.34
183 184 0.453282 CAGCTTTTGGTCATCACGCG 60.453 55.000 3.53 3.53 0.00 6.01
184 185 1.154225 GCTTTTGGTCATCACGCGG 60.154 57.895 12.47 0.00 0.00 6.46
185 186 1.154225 CTTTTGGTCATCACGCGGC 60.154 57.895 12.47 0.00 0.00 6.53
186 187 1.851021 CTTTTGGTCATCACGCGGCA 61.851 55.000 12.47 0.00 0.00 5.69
187 188 2.123988 TTTTGGTCATCACGCGGCAC 62.124 55.000 12.47 0.00 0.00 5.01
220 221 4.308458 CGCAACCTCGGGACACCA 62.308 66.667 0.00 0.00 36.13 4.17
221 222 2.351276 GCAACCTCGGGACACCAT 59.649 61.111 0.00 0.00 36.13 3.55
222 223 2.040544 GCAACCTCGGGACACCATG 61.041 63.158 0.00 0.00 36.13 3.66
223 224 1.377202 CAACCTCGGGACACCATGG 60.377 63.158 11.19 11.19 36.13 3.66
224 225 1.537889 AACCTCGGGACACCATGGA 60.538 57.895 21.47 0.00 36.13 3.41
225 226 1.838073 AACCTCGGGACACCATGGAC 61.838 60.000 21.47 9.21 36.13 4.02
226 227 2.184322 CTCGGGACACCATGGACG 59.816 66.667 21.47 11.71 36.13 4.79
227 228 3.371097 CTCGGGACACCATGGACGG 62.371 68.421 21.47 10.02 36.13 4.79
228 229 4.467084 CGGGACACCATGGACGGG 62.467 72.222 21.47 7.33 36.13 5.28
229 230 3.327404 GGGACACCATGGACGGGT 61.327 66.667 21.47 10.75 39.88 5.28
234 235 3.338250 ACCATGGACGGGTGCCAT 61.338 61.111 21.47 0.00 46.76 4.40
237 238 4.820744 ATGGACGGGTGCCATGGC 62.821 66.667 30.54 30.54 44.21 4.40
243 244 2.123769 GGGTGCCATGGCTGCATA 60.124 61.111 35.53 14.23 41.46 3.14
244 245 1.757731 GGGTGCCATGGCTGCATAA 60.758 57.895 35.53 13.42 41.46 1.90
245 246 1.329171 GGGTGCCATGGCTGCATAAA 61.329 55.000 35.53 12.62 41.46 1.40
246 247 0.536260 GGTGCCATGGCTGCATAAAA 59.464 50.000 35.53 11.81 41.46 1.52
247 248 1.066286 GGTGCCATGGCTGCATAAAAA 60.066 47.619 35.53 11.01 41.46 1.94
248 249 2.273557 GTGCCATGGCTGCATAAAAAG 58.726 47.619 35.53 0.00 41.46 2.27
249 250 2.094078 GTGCCATGGCTGCATAAAAAGA 60.094 45.455 35.53 9.65 41.46 2.52
250 251 2.566279 TGCCATGGCTGCATAAAAAGAA 59.434 40.909 35.53 9.43 42.51 2.52
251 252 3.192466 GCCATGGCTGCATAAAAAGAAG 58.808 45.455 29.98 0.00 38.26 2.85
252 253 3.192466 CCATGGCTGCATAAAAAGAAGC 58.808 45.455 0.00 0.00 36.90 3.86
253 254 3.368635 CCATGGCTGCATAAAAAGAAGCA 60.369 43.478 0.00 0.00 39.53 3.91
257 258 3.476295 CTGCATAAAAAGAAGCAGCGA 57.524 42.857 0.00 0.00 46.51 4.93
258 259 3.825308 CTGCATAAAAAGAAGCAGCGAA 58.175 40.909 0.00 0.00 46.51 4.70
259 260 3.825308 TGCATAAAAAGAAGCAGCGAAG 58.175 40.909 0.00 0.00 32.48 3.79
260 261 3.253188 TGCATAAAAAGAAGCAGCGAAGT 59.747 39.130 0.00 0.00 32.48 3.01
261 262 3.848582 GCATAAAAAGAAGCAGCGAAGTC 59.151 43.478 0.00 0.00 0.00 3.01
262 263 4.406943 CATAAAAAGAAGCAGCGAAGTCC 58.593 43.478 0.00 0.00 0.00 3.85
263 264 1.239347 AAAAGAAGCAGCGAAGTCCC 58.761 50.000 0.00 0.00 0.00 4.46
264 265 0.108585 AAAGAAGCAGCGAAGTCCCA 59.891 50.000 0.00 0.00 0.00 4.37
265 266 0.603975 AAGAAGCAGCGAAGTCCCAC 60.604 55.000 0.00 0.00 0.00 4.61
266 267 1.301716 GAAGCAGCGAAGTCCCACA 60.302 57.895 0.00 0.00 0.00 4.17
267 268 0.674895 GAAGCAGCGAAGTCCCACAT 60.675 55.000 0.00 0.00 0.00 3.21
268 269 0.674895 AAGCAGCGAAGTCCCACATC 60.675 55.000 0.00 0.00 0.00 3.06
269 270 2.456119 GCAGCGAAGTCCCACATCG 61.456 63.158 0.00 0.00 41.60 3.84
272 273 3.786101 CGAAGTCCCACATCGCTG 58.214 61.111 0.00 0.00 32.59 5.18
273 274 2.456119 CGAAGTCCCACATCGCTGC 61.456 63.158 0.00 0.00 32.59 5.25
274 275 2.045926 AAGTCCCACATCGCTGCC 60.046 61.111 0.00 0.00 0.00 4.85
275 276 3.958147 AAGTCCCACATCGCTGCCG 62.958 63.158 0.00 0.00 0.00 5.69
291 292 4.379243 CGGTCGCAGCTCCCAGTT 62.379 66.667 0.00 0.00 0.00 3.16
292 293 2.743928 GGTCGCAGCTCCCAGTTG 60.744 66.667 0.00 0.00 0.00 3.16
293 294 2.343758 GTCGCAGCTCCCAGTTGA 59.656 61.111 0.00 0.00 0.00 3.18
294 295 1.739562 GTCGCAGCTCCCAGTTGAG 60.740 63.158 0.00 0.00 35.40 3.02
300 301 2.345244 CTCCCAGTTGAGCAGCGT 59.655 61.111 0.00 0.00 0.00 5.07
301 302 1.739562 CTCCCAGTTGAGCAGCGTC 60.740 63.158 0.00 0.00 0.00 5.19
302 303 3.114616 CCCAGTTGAGCAGCGTCG 61.115 66.667 0.00 0.00 0.00 5.12
303 304 2.049156 CCAGTTGAGCAGCGTCGA 60.049 61.111 0.00 0.00 0.00 4.20
304 305 2.375766 CCAGTTGAGCAGCGTCGAC 61.376 63.158 5.18 5.18 0.00 4.20
305 306 1.372251 CAGTTGAGCAGCGTCGACT 60.372 57.895 14.70 8.29 41.21 4.18
306 307 1.081108 AGTTGAGCAGCGTCGACTC 60.081 57.895 14.70 5.55 36.59 3.36
307 308 2.126850 TTGAGCAGCGTCGACTCG 60.127 61.111 14.70 2.03 32.98 4.18
315 316 2.502080 CGTCGACTCGCCACTGTC 60.502 66.667 14.70 0.00 0.00 3.51
318 319 4.406173 CGACTCGCCACTGTCGCT 62.406 66.667 2.69 0.00 46.94 4.93
319 320 2.049063 GACTCGCCACTGTCGCTT 60.049 61.111 0.00 0.00 0.00 4.68
320 321 1.664965 GACTCGCCACTGTCGCTTT 60.665 57.895 0.00 0.00 0.00 3.51
321 322 1.891060 GACTCGCCACTGTCGCTTTG 61.891 60.000 0.00 0.00 0.00 2.77
322 323 3.300667 CTCGCCACTGTCGCTTTGC 62.301 63.158 0.00 0.00 0.00 3.68
323 324 3.648982 CGCCACTGTCGCTTTGCA 61.649 61.111 0.00 0.00 0.00 4.08
324 325 2.050985 GCCACTGTCGCTTTGCAC 60.051 61.111 0.00 0.00 0.00 4.57
325 326 2.249309 CCACTGTCGCTTTGCACG 59.751 61.111 0.00 0.00 0.00 5.34
326 327 2.249309 CACTGTCGCTTTGCACGG 59.751 61.111 0.00 0.00 0.00 4.94
327 328 2.203015 ACTGTCGCTTTGCACGGT 60.203 55.556 0.00 0.00 0.00 4.83
328 329 1.817941 ACTGTCGCTTTGCACGGTT 60.818 52.632 0.00 0.00 29.81 4.44
329 330 1.082756 CTGTCGCTTTGCACGGTTC 60.083 57.895 0.00 0.00 0.00 3.62
330 331 2.251371 GTCGCTTTGCACGGTTCC 59.749 61.111 0.00 0.00 0.00 3.62
331 332 2.203084 TCGCTTTGCACGGTTCCA 60.203 55.556 0.00 0.00 0.00 3.53
332 333 1.820056 TCGCTTTGCACGGTTCCAA 60.820 52.632 0.00 0.00 0.00 3.53
333 334 1.657181 CGCTTTGCACGGTTCCAAC 60.657 57.895 0.00 0.00 0.00 3.77
334 335 1.435515 GCTTTGCACGGTTCCAACA 59.564 52.632 0.00 0.00 0.00 3.33
335 336 0.031994 GCTTTGCACGGTTCCAACAT 59.968 50.000 0.00 0.00 0.00 2.71
336 337 1.930371 GCTTTGCACGGTTCCAACATC 60.930 52.381 0.00 0.00 0.00 3.06
337 338 1.608590 CTTTGCACGGTTCCAACATCT 59.391 47.619 0.00 0.00 0.00 2.90
338 339 1.234821 TTGCACGGTTCCAACATCTC 58.765 50.000 0.00 0.00 0.00 2.75
339 340 0.107643 TGCACGGTTCCAACATCTCA 59.892 50.000 0.00 0.00 0.00 3.27
340 341 0.798776 GCACGGTTCCAACATCTCAG 59.201 55.000 0.00 0.00 0.00 3.35
341 342 1.608025 GCACGGTTCCAACATCTCAGA 60.608 52.381 0.00 0.00 0.00 3.27
342 343 2.766313 CACGGTTCCAACATCTCAGAA 58.234 47.619 0.00 0.00 0.00 3.02
343 344 2.738846 CACGGTTCCAACATCTCAGAAG 59.261 50.000 0.00 0.00 0.00 2.85
344 345 2.632996 ACGGTTCCAACATCTCAGAAGA 59.367 45.455 0.00 0.00 35.54 2.87
345 346 2.996621 CGGTTCCAACATCTCAGAAGAC 59.003 50.000 0.00 0.00 33.32 3.01
346 347 3.339141 GGTTCCAACATCTCAGAAGACC 58.661 50.000 0.00 0.00 33.32 3.85
347 348 2.996621 GTTCCAACATCTCAGAAGACCG 59.003 50.000 0.00 0.00 33.32 4.79
348 349 1.550524 TCCAACATCTCAGAAGACCGG 59.449 52.381 0.00 0.00 33.32 5.28
349 350 1.276421 CCAACATCTCAGAAGACCGGT 59.724 52.381 6.92 6.92 33.32 5.28
350 351 2.289694 CCAACATCTCAGAAGACCGGTT 60.290 50.000 9.42 0.00 33.32 4.44
351 352 3.403038 CAACATCTCAGAAGACCGGTTT 58.597 45.455 9.42 0.00 33.32 3.27
352 353 3.320673 ACATCTCAGAAGACCGGTTTC 57.679 47.619 9.42 14.47 33.32 2.78
353 354 2.632996 ACATCTCAGAAGACCGGTTTCA 59.367 45.455 22.86 9.56 33.32 2.69
354 355 3.257393 CATCTCAGAAGACCGGTTTCAG 58.743 50.000 22.86 17.77 33.32 3.02
355 356 1.000955 TCTCAGAAGACCGGTTTCAGC 59.999 52.381 22.86 7.11 0.00 4.26
356 357 0.756294 TCAGAAGACCGGTTTCAGCA 59.244 50.000 22.86 9.84 0.00 4.41
357 358 1.151668 CAGAAGACCGGTTTCAGCAG 58.848 55.000 22.86 11.51 0.00 4.24
358 359 0.759346 AGAAGACCGGTTTCAGCAGT 59.241 50.000 22.86 7.11 0.00 4.40
359 360 0.868406 GAAGACCGGTTTCAGCAGTG 59.132 55.000 9.42 0.00 0.00 3.66
360 361 0.468226 AAGACCGGTTTCAGCAGTGA 59.532 50.000 9.42 0.00 0.00 3.41
361 362 0.249911 AGACCGGTTTCAGCAGTGAC 60.250 55.000 9.42 0.00 30.10 3.67
362 363 1.557443 GACCGGTTTCAGCAGTGACG 61.557 60.000 9.42 0.00 30.10 4.35
363 364 1.300620 CCGGTTTCAGCAGTGACGA 60.301 57.895 0.00 0.00 30.10 4.20
364 365 0.670546 CCGGTTTCAGCAGTGACGAT 60.671 55.000 0.00 0.00 30.10 3.73
365 366 1.148310 CGGTTTCAGCAGTGACGATT 58.852 50.000 0.00 0.00 30.10 3.34
366 367 1.136252 CGGTTTCAGCAGTGACGATTG 60.136 52.381 0.00 0.00 30.10 2.67
367 368 1.400242 GGTTTCAGCAGTGACGATTGC 60.400 52.381 0.00 0.00 40.57 3.56
371 372 3.972227 GCAGTGACGATTGCTGGT 58.028 55.556 0.00 0.00 37.35 4.00
372 373 2.247790 GCAGTGACGATTGCTGGTT 58.752 52.632 0.00 0.00 37.35 3.67
373 374 0.166814 GCAGTGACGATTGCTGGTTC 59.833 55.000 0.00 0.00 37.35 3.62
374 375 0.798776 CAGTGACGATTGCTGGTTCC 59.201 55.000 0.00 0.00 0.00 3.62
375 376 0.396435 AGTGACGATTGCTGGTTCCA 59.604 50.000 0.00 0.00 0.00 3.53
376 377 0.798776 GTGACGATTGCTGGTTCCAG 59.201 55.000 13.88 13.88 37.15 3.86
384 385 3.895025 CTGGTTCCAGCATCCACG 58.105 61.111 5.89 0.00 0.00 4.94
385 386 2.359850 TGGTTCCAGCATCCACGC 60.360 61.111 0.00 0.00 0.00 5.34
386 387 2.359850 GGTTCCAGCATCCACGCA 60.360 61.111 0.00 0.00 0.00 5.24
387 388 2.690778 GGTTCCAGCATCCACGCAC 61.691 63.158 0.00 0.00 0.00 5.34
388 389 2.359850 TTCCAGCATCCACGCACC 60.360 61.111 0.00 0.00 0.00 5.01
389 390 3.189376 TTCCAGCATCCACGCACCA 62.189 57.895 0.00 0.00 0.00 4.17
390 391 3.129502 CCAGCATCCACGCACCAG 61.130 66.667 0.00 0.00 0.00 4.00
391 392 3.807538 CAGCATCCACGCACCAGC 61.808 66.667 0.00 0.00 37.42 4.85
410 411 4.400961 GGTCGCAGCCTTCCAGCT 62.401 66.667 0.00 0.00 46.45 4.24
411 412 2.817396 GTCGCAGCCTTCCAGCTC 60.817 66.667 0.00 0.00 42.61 4.09
412 413 4.087892 TCGCAGCCTTCCAGCTCC 62.088 66.667 0.00 0.00 42.61 4.70
415 416 3.710722 CAGCCTTCCAGCTCCGGT 61.711 66.667 0.00 0.00 42.61 5.28
416 417 2.930562 AGCCTTCCAGCTCCGGTT 60.931 61.111 0.00 0.00 39.48 4.44
417 418 2.747855 GCCTTCCAGCTCCGGTTG 60.748 66.667 0.00 0.00 0.00 3.77
418 419 3.068881 CCTTCCAGCTCCGGTTGA 58.931 61.111 0.00 0.00 0.00 3.18
419 420 1.604378 CCTTCCAGCTCCGGTTGAT 59.396 57.895 0.00 0.00 0.00 2.57
420 421 0.830648 CCTTCCAGCTCCGGTTGATA 59.169 55.000 0.00 0.00 0.00 2.15
421 422 1.209504 CCTTCCAGCTCCGGTTGATAA 59.790 52.381 0.00 0.00 0.00 1.75
422 423 2.355716 CCTTCCAGCTCCGGTTGATAAA 60.356 50.000 0.00 0.00 0.00 1.40
423 424 3.545703 CTTCCAGCTCCGGTTGATAAAT 58.454 45.455 0.00 0.00 0.00 1.40
424 425 4.444306 CCTTCCAGCTCCGGTTGATAAATA 60.444 45.833 0.00 0.00 0.00 1.40
425 426 4.974645 TCCAGCTCCGGTTGATAAATAT 57.025 40.909 0.00 0.00 0.00 1.28
426 427 6.428083 TTCCAGCTCCGGTTGATAAATATA 57.572 37.500 0.00 0.00 0.00 0.86
427 428 6.037786 TCCAGCTCCGGTTGATAAATATAG 57.962 41.667 0.00 0.00 0.00 1.31
428 429 5.046591 TCCAGCTCCGGTTGATAAATATAGG 60.047 44.000 0.00 0.00 0.00 2.57
429 430 5.046591 CCAGCTCCGGTTGATAAATATAGGA 60.047 44.000 0.00 0.00 0.00 2.94
430 431 6.464222 CAGCTCCGGTTGATAAATATAGGAA 58.536 40.000 0.00 0.00 0.00 3.36
431 432 6.369065 CAGCTCCGGTTGATAAATATAGGAAC 59.631 42.308 0.00 0.00 0.00 3.62
432 433 5.347907 GCTCCGGTTGATAAATATAGGAACG 59.652 44.000 0.00 0.00 0.00 3.95
433 434 5.232463 TCCGGTTGATAAATATAGGAACGC 58.768 41.667 0.00 0.00 0.00 4.84
434 435 4.992319 CCGGTTGATAAATATAGGAACGCA 59.008 41.667 0.00 0.00 0.00 5.24
435 436 5.467399 CCGGTTGATAAATATAGGAACGCAA 59.533 40.000 0.00 0.00 0.00 4.85
437 438 6.371389 GGTTGATAAATATAGGAACGCAAGC 58.629 40.000 0.00 0.00 45.62 4.01
438 439 6.017440 GGTTGATAAATATAGGAACGCAAGCA 60.017 38.462 0.00 0.00 45.62 3.91
439 440 7.308589 GGTTGATAAATATAGGAACGCAAGCAT 60.309 37.037 0.00 0.00 45.62 3.79
440 441 8.717821 GTTGATAAATATAGGAACGCAAGCATA 58.282 33.333 0.00 0.00 45.62 3.14
441 442 8.479313 TGATAAATATAGGAACGCAAGCATAG 57.521 34.615 0.00 0.00 45.62 2.23
442 443 7.549134 TGATAAATATAGGAACGCAAGCATAGG 59.451 37.037 0.00 0.00 45.62 2.57
443 444 2.550830 ATAGGAACGCAAGCATAGGG 57.449 50.000 0.00 0.00 45.62 3.53
444 445 1.491668 TAGGAACGCAAGCATAGGGA 58.508 50.000 0.00 0.00 45.62 4.20
445 446 0.839946 AGGAACGCAAGCATAGGGAT 59.160 50.000 0.00 0.00 45.62 3.85
446 447 0.947244 GGAACGCAAGCATAGGGATG 59.053 55.000 0.00 0.00 45.62 3.51
447 448 1.475034 GGAACGCAAGCATAGGGATGA 60.475 52.381 0.00 0.00 45.62 2.92
448 449 2.288666 GAACGCAAGCATAGGGATGAA 58.711 47.619 0.00 0.00 45.62 2.57
449 450 2.645838 ACGCAAGCATAGGGATGAAT 57.354 45.000 0.00 0.00 45.62 2.57
450 451 2.224606 ACGCAAGCATAGGGATGAATG 58.775 47.619 0.00 0.00 45.62 2.67
451 452 2.224606 CGCAAGCATAGGGATGAATGT 58.775 47.619 0.00 0.00 34.73 2.71
452 453 3.181455 ACGCAAGCATAGGGATGAATGTA 60.181 43.478 0.00 0.00 45.62 2.29
453 454 4.005650 CGCAAGCATAGGGATGAATGTAT 58.994 43.478 0.00 0.00 34.73 2.29
454 455 5.178061 CGCAAGCATAGGGATGAATGTATA 58.822 41.667 0.00 0.00 34.73 1.47
455 456 5.819379 CGCAAGCATAGGGATGAATGTATAT 59.181 40.000 0.00 0.00 34.73 0.86
456 457 6.238293 CGCAAGCATAGGGATGAATGTATATG 60.238 42.308 0.00 0.00 34.73 1.78
457 458 6.459298 GCAAGCATAGGGATGAATGTATATGC 60.459 42.308 6.84 6.84 43.58 3.14
458 459 6.317663 AGCATAGGGATGAATGTATATGCA 57.682 37.500 15.09 0.00 44.93 3.96
459 460 6.907961 AGCATAGGGATGAATGTATATGCAT 58.092 36.000 15.09 3.79 44.93 3.96
460 461 6.771267 AGCATAGGGATGAATGTATATGCATG 59.229 38.462 10.16 0.00 44.93 4.06
461 462 6.514541 GCATAGGGATGAATGTATATGCATGC 60.515 42.308 11.82 11.82 43.05 4.06
462 463 4.925836 AGGGATGAATGTATATGCATGCA 58.074 39.130 25.04 25.04 41.25 3.96
463 464 5.516044 AGGGATGAATGTATATGCATGCAT 58.484 37.500 33.92 33.92 45.26 3.96
464 465 5.359860 AGGGATGAATGTATATGCATGCATG 59.640 40.000 37.43 22.70 43.28 4.06
465 466 5.126545 GGGATGAATGTATATGCATGCATGT 59.873 40.000 37.43 33.30 43.28 3.21
466 467 6.033966 GGATGAATGTATATGCATGCATGTG 58.966 40.000 37.43 5.68 43.28 3.21
467 468 6.127842 GGATGAATGTATATGCATGCATGTGA 60.128 38.462 37.43 23.67 43.28 3.58
468 469 6.249035 TGAATGTATATGCATGCATGTGAG 57.751 37.500 37.43 2.78 37.52 3.51
469 470 4.696899 ATGTATATGCATGCATGTGAGC 57.303 40.909 37.43 25.08 36.28 4.26
470 471 2.481185 TGTATATGCATGCATGTGAGCG 59.519 45.455 37.43 1.59 37.82 5.03
471 472 1.601166 ATATGCATGCATGTGAGCGT 58.399 45.000 37.43 16.54 37.82 5.07
472 473 0.939419 TATGCATGCATGTGAGCGTC 59.061 50.000 37.43 9.65 37.82 5.19
473 474 0.746923 ATGCATGCATGTGAGCGTCT 60.747 50.000 31.74 4.69 37.31 4.18
474 475 1.062047 GCATGCATGTGAGCGTCTG 59.938 57.895 26.79 0.05 37.31 3.51
475 476 1.062047 CATGCATGTGAGCGTCTGC 59.938 57.895 18.91 0.00 43.24 4.26
476 477 2.030862 TGCATGTGAGCGTCTGCA 59.969 55.556 0.00 0.00 46.23 4.41
477 478 1.376295 TGCATGTGAGCGTCTGCAT 60.376 52.632 0.00 0.00 46.23 3.96
478 479 1.062047 GCATGTGAGCGTCTGCATG 59.938 57.895 0.00 12.32 46.23 4.06
479 480 1.642037 GCATGTGAGCGTCTGCATGT 61.642 55.000 15.32 0.00 46.23 3.21
480 481 0.096454 CATGTGAGCGTCTGCATGTG 59.904 55.000 0.00 0.00 46.23 3.21
481 482 0.321034 ATGTGAGCGTCTGCATGTGT 60.321 50.000 0.00 0.00 46.23 3.72
482 483 1.223417 TGTGAGCGTCTGCATGTGTG 61.223 55.000 0.00 0.00 46.23 3.82
483 484 1.069596 TGAGCGTCTGCATGTGTGT 59.930 52.632 0.00 0.00 46.23 3.72
484 485 0.316841 TGAGCGTCTGCATGTGTGTA 59.683 50.000 0.00 0.00 46.23 2.90
485 486 0.716108 GAGCGTCTGCATGTGTGTAC 59.284 55.000 0.00 0.00 46.23 2.90
486 487 0.318441 AGCGTCTGCATGTGTGTACT 59.682 50.000 0.00 0.00 46.23 2.73
487 488 0.716108 GCGTCTGCATGTGTGTACTC 59.284 55.000 0.00 0.00 42.15 2.59
488 489 1.350193 CGTCTGCATGTGTGTACTCC 58.650 55.000 0.00 0.00 0.00 3.85
489 490 1.726853 GTCTGCATGTGTGTACTCCC 58.273 55.000 0.00 0.00 0.00 4.30
492 493 1.552337 CTGCATGTGTGTACTCCCTCT 59.448 52.381 0.00 0.00 0.00 3.69
504 505 8.501580 GTGTGTACTCCCTCTGTTTTTATTTAC 58.498 37.037 0.00 0.00 0.00 2.01
624 625 9.638239 ATGCGAAAGTACATTTAACAATGAATT 57.362 25.926 1.97 0.00 42.35 2.17
720 721 7.426410 TGATTTTGACCAAAACTAATACGCAA 58.574 30.769 9.75 0.00 42.32 4.85
756 759 7.074653 ACAGAGGGAGTACTGTATTTCAAAA 57.925 36.000 0.00 0.00 44.06 2.44
781 784 3.934457 AACGCAAACATAAAAGAGGGG 57.066 42.857 0.00 0.00 0.00 4.79
808 811 8.479829 GTACAAAACCAACGTACATAGAAAAC 57.520 34.615 0.00 0.00 36.38 2.43
868 881 4.220821 TCGTGAGGGATATAATCTCTTGGC 59.779 45.833 0.00 0.00 41.09 4.52
915 929 1.420430 TTCTCCCGTTGAGTCTTGGT 58.580 50.000 0.00 0.00 42.12 3.67
916 930 2.297698 TCTCCCGTTGAGTCTTGGTA 57.702 50.000 0.00 0.00 42.12 3.25
917 931 2.816411 TCTCCCGTTGAGTCTTGGTAT 58.184 47.619 0.00 0.00 42.12 2.73
918 932 3.972133 TCTCCCGTTGAGTCTTGGTATA 58.028 45.455 0.00 0.00 42.12 1.47
919 933 4.543689 TCTCCCGTTGAGTCTTGGTATAT 58.456 43.478 0.00 0.00 42.12 0.86
920 934 5.698104 TCTCCCGTTGAGTCTTGGTATATA 58.302 41.667 0.00 0.00 42.12 0.86
971 988 6.595716 GGTTCAGCTAGACATACACATCTTTT 59.404 38.462 0.00 0.00 0.00 2.27
987 1004 1.999071 TTTTTCCAGCAACAGCGCGT 61.999 50.000 8.43 0.00 36.85 6.01
991 1008 3.782244 CAGCAACAGCGCGTCCTC 61.782 66.667 8.43 0.00 36.85 3.71
1048 1075 4.895889 AGGTCCTTCCTTTTCTTTTCCTTG 59.104 41.667 0.00 0.00 45.67 3.61
1049 1076 4.893524 GGTCCTTCCTTTTCTTTTCCTTGA 59.106 41.667 0.00 0.00 0.00 3.02
1051 1078 5.359860 GTCCTTCCTTTTCTTTTCCTTGACA 59.640 40.000 0.00 0.00 0.00 3.58
1097 1133 1.450312 CTTGGGTGCAGGACGATCC 60.450 63.158 0.00 0.00 36.58 3.36
1120 1156 3.296322 GAGGCTCTCCAGATTGATACG 57.704 52.381 7.40 0.00 33.74 3.06
1121 1157 2.887783 GAGGCTCTCCAGATTGATACGA 59.112 50.000 7.40 0.00 33.74 3.43
1123 1159 2.625790 GGCTCTCCAGATTGATACGACT 59.374 50.000 0.00 0.00 0.00 4.18
1124 1160 3.821600 GGCTCTCCAGATTGATACGACTA 59.178 47.826 0.00 0.00 0.00 2.59
1173 1209 3.201290 AGCCATGATCGATCTTTGTGTC 58.799 45.455 25.02 9.60 0.00 3.67
1230 1266 0.464036 TAGATGGGCACACGTGATCC 59.536 55.000 25.01 20.79 0.00 3.36
1241 1277 2.365617 ACACGTGATCCACACTTCTTCT 59.634 45.455 25.01 0.00 46.24 2.85
1242 1278 3.181465 ACACGTGATCCACACTTCTTCTT 60.181 43.478 25.01 0.00 46.24 2.52
1243 1279 3.430218 CACGTGATCCACACTTCTTCTTC 59.570 47.826 10.90 0.00 46.24 2.87
1244 1280 2.996621 CGTGATCCACACTTCTTCTTCC 59.003 50.000 0.00 0.00 46.24 3.46
1245 1281 3.339141 GTGATCCACACTTCTTCTTCCC 58.661 50.000 0.00 0.00 45.13 3.97
1283 1319 3.494626 CCGCAACTATTAGCACAGGTATG 59.505 47.826 0.00 0.00 0.00 2.39
1284 1320 4.119862 CGCAACTATTAGCACAGGTATGT 58.880 43.478 0.00 0.00 41.57 2.29
1287 1323 7.088272 CGCAACTATTAGCACAGGTATGTATA 58.912 38.462 0.00 0.00 37.65 1.47
1327 1363 4.034048 GCCTGTTTTCGGTCATACATACAG 59.966 45.833 0.00 0.00 33.39 2.74
1328 1367 5.175859 CCTGTTTTCGGTCATACATACAGT 58.824 41.667 0.00 0.00 32.07 3.55
1388 1427 9.099454 GGAGAGGAACTAACATAACTATGTTTG 57.901 37.037 17.76 17.41 46.90 2.93
1578 1619 0.322008 CAAGGCCCTTGTCAGTCTCC 60.322 60.000 15.63 0.00 36.79 3.71
1638 1680 4.704965 GACCAATCGCTATTTTCTACCCT 58.295 43.478 0.00 0.00 0.00 4.34
1639 1681 4.451900 ACCAATCGCTATTTTCTACCCTG 58.548 43.478 0.00 0.00 0.00 4.45
1650 1692 2.684001 TCTACCCTGTGCATAAACGG 57.316 50.000 0.00 0.00 0.00 4.44
1653 1695 0.323360 ACCCTGTGCATAAACGGCAT 60.323 50.000 0.00 0.00 44.11 4.40
1667 1709 0.101040 CGGCATGCGATTTGTTCCAT 59.899 50.000 12.44 0.00 0.00 3.41
1730 1772 4.870123 AATTTAGAATGTGGTTGCAGCA 57.130 36.364 2.05 0.00 0.00 4.41
1734 1776 0.524862 GAATGTGGTTGCAGCAGAGG 59.475 55.000 2.05 0.00 0.00 3.69
1805 1847 2.880890 CACTGGCCTTGTAATCTATGCC 59.119 50.000 3.32 0.00 39.33 4.40
1843 1885 1.896660 GGTTGAACGAGCAAGGCCA 60.897 57.895 5.01 0.00 0.00 5.36
1869 1911 6.600822 TGATGGTTTGGAAGAAGATGAAGATC 59.399 38.462 0.00 0.00 0.00 2.75
1877 1919 2.432510 AGAAGATGAAGATCGTGACCCC 59.567 50.000 0.00 0.00 33.34 4.95
1887 1929 0.744874 TCGTGACCCCGATGATCTTC 59.255 55.000 0.00 0.00 30.63 2.87
1925 1985 4.241151 ACCATGATGATCTGGAGGAAGAT 58.759 43.478 14.90 0.00 39.66 2.40
1934 1994 5.845065 TGATCTGGAGGAAGATGAAGATGAT 59.155 40.000 0.00 0.00 37.03 2.45
1942 2002 8.373981 GGAGGAAGATGAAGATGATGAAGATTA 58.626 37.037 0.00 0.00 0.00 1.75
1957 2017 6.775939 TGAAGATTATGACAGCGATGATTC 57.224 37.500 8.12 0.00 0.00 2.52
2031 2099 2.094026 GTGAATGAAGTGGCCCCAAATC 60.094 50.000 0.00 0.00 0.00 2.17
2492 2576 1.985895 AGAAACCCGGAAGATCCAACT 59.014 47.619 0.73 0.00 35.91 3.16
2496 2580 1.423921 ACCCGGAAGATCCAACTTGTT 59.576 47.619 0.73 0.00 35.91 2.83
2585 2669 3.680786 GCGGCAACCAACTTCCCC 61.681 66.667 0.00 0.00 0.00 4.81
2624 2709 4.463879 CTCAGGCCTGGGCGTCTG 62.464 72.222 32.23 5.36 43.06 3.51
2882 3047 0.390340 TGGTGAATGACGCTGCTCTC 60.390 55.000 0.00 0.00 0.00 3.20
2883 3048 0.390340 GGTGAATGACGCTGCTCTCA 60.390 55.000 0.00 0.00 0.00 3.27
2884 3049 1.432514 GTGAATGACGCTGCTCTCAA 58.567 50.000 0.00 0.00 0.00 3.02
2885 3050 1.392853 GTGAATGACGCTGCTCTCAAG 59.607 52.381 0.00 0.00 0.00 3.02
2886 3051 1.005340 GAATGACGCTGCTCTCAAGG 58.995 55.000 0.00 0.00 0.00 3.61
2887 3052 1.023513 AATGACGCTGCTCTCAAGGC 61.024 55.000 0.00 0.00 0.00 4.35
2888 3053 2.047844 GACGCTGCTCTCAAGGCA 60.048 61.111 0.00 0.00 38.10 4.75
3363 3549 0.032678 CAGCTGTGTGAAGAGGACGT 59.967 55.000 5.25 0.00 0.00 4.34
3408 3615 2.370281 TGTCGATGAGGAAGTGAAGC 57.630 50.000 0.00 0.00 0.00 3.86
3564 3777 4.552355 GCAAGTAAACGGCCTTAACAATT 58.448 39.130 0.00 0.00 0.00 2.32
3594 3807 0.321671 TCAGGAAACGCCTCCTTCAG 59.678 55.000 3.15 0.00 46.97 3.02
3632 3845 5.281727 GGCAAAACAGTTTTGTCCTAAGAG 58.718 41.667 30.56 10.47 46.61 2.85
3723 3936 6.524101 TTCAGTAAAAACACTCCTGCTTTT 57.476 33.333 0.00 0.00 31.91 2.27
3739 3952 5.296283 CCTGCTTTTGGATCTTAGAGACATG 59.704 44.000 0.00 0.00 0.00 3.21
3744 3957 6.992063 TTTGGATCTTAGAGACATGAAAGC 57.008 37.500 0.00 0.00 0.00 3.51
3756 3969 2.825532 ACATGAAAGCACCCCAACATAC 59.174 45.455 0.00 0.00 0.00 2.39
3839 4052 7.866898 TGTACATATGGCAATATCACAAAATGC 59.133 33.333 7.80 0.00 36.31 3.56
3860 4073 9.787532 AAATGCATCATGTGTTTGTAACTATAC 57.212 29.630 0.00 0.00 0.00 1.47
3865 4078 7.011499 TCATGTGTTTGTAACTATACCCTGT 57.989 36.000 0.00 0.00 0.00 4.00
3876 4089 1.941377 ATACCCTGTTACCCACGTCA 58.059 50.000 0.00 0.00 0.00 4.35
3884 4097 2.067013 GTTACCCACGTCAGCTTCTTC 58.933 52.381 0.00 0.00 0.00 2.87
3918 4131 4.792513 ATTCCAGAGAATGCTTCCATCT 57.207 40.909 0.00 0.00 41.30 2.90
3965 4178 4.842531 TTCACAATCAGCTTATCTCCCA 57.157 40.909 0.00 0.00 0.00 4.37
3972 4185 5.643421 ATCAGCTTATCTCCCAATCAAGT 57.357 39.130 0.00 0.00 0.00 3.16
3982 4195 9.967451 TTATCTCCCAATCAAGTGTATTTAACA 57.033 29.630 0.00 0.00 35.06 2.41
4019 4232 0.387565 GTGAAACCGTGCCCACAAAT 59.612 50.000 0.00 0.00 0.00 2.32
4022 4235 2.894126 TGAAACCGTGCCCACAAATTAT 59.106 40.909 0.00 0.00 0.00 1.28
4089 4304 9.816787 AATTTTCCCTAAAAACTACCATGTCTA 57.183 29.630 0.00 0.00 39.59 2.59
4100 4315 6.971726 ACTACCATGTCTATAAATCGACCA 57.028 37.500 0.00 0.00 0.00 4.02
4215 4434 1.068352 AAAAGCAGTCAGGTCCCCCT 61.068 55.000 0.00 0.00 44.02 4.79
4228 4447 4.504916 CCCCTGCGAGCTCGTCAG 62.505 72.222 34.13 34.13 42.22 3.51
4304 4523 2.669569 GGAGCAACGGCAAGCAGA 60.670 61.111 0.00 0.00 44.61 4.26
4306 4525 2.670934 AGCAACGGCAAGCAGAGG 60.671 61.111 0.00 0.00 44.61 3.69
4307 4526 2.980233 GCAACGGCAAGCAGAGGT 60.980 61.111 0.00 0.00 40.72 3.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.087771 GTAATCACGGAGGTTGCGGG 61.088 60.000 0.00 0.00 35.32 6.13
1 2 0.108329 AGTAATCACGGAGGTTGCGG 60.108 55.000 0.00 0.00 34.75 5.69
2 3 0.999406 CAGTAATCACGGAGGTTGCG 59.001 55.000 0.00 0.00 37.19 4.85
3 4 2.094762 ACAGTAATCACGGAGGTTGC 57.905 50.000 0.00 0.00 0.00 4.17
4 5 3.926616 AGAACAGTAATCACGGAGGTTG 58.073 45.455 0.00 0.00 0.00 3.77
5 6 3.367087 CGAGAACAGTAATCACGGAGGTT 60.367 47.826 0.00 0.00 0.00 3.50
6 7 2.163815 CGAGAACAGTAATCACGGAGGT 59.836 50.000 0.00 0.00 0.00 3.85
7 8 2.798680 CGAGAACAGTAATCACGGAGG 58.201 52.381 0.00 0.00 0.00 4.30
8 9 2.159366 AGCGAGAACAGTAATCACGGAG 60.159 50.000 0.00 0.00 32.60 4.63
9 10 1.816835 AGCGAGAACAGTAATCACGGA 59.183 47.619 0.00 0.00 32.60 4.69
10 11 1.920574 CAGCGAGAACAGTAATCACGG 59.079 52.381 0.00 0.00 32.60 4.94
11 12 2.594654 GACAGCGAGAACAGTAATCACG 59.405 50.000 0.00 0.00 34.63 4.35
12 13 3.575630 TGACAGCGAGAACAGTAATCAC 58.424 45.455 0.00 0.00 0.00 3.06
13 14 3.934457 TGACAGCGAGAACAGTAATCA 57.066 42.857 0.00 0.00 0.00 2.57
14 15 4.027295 CGATTGACAGCGAGAACAGTAATC 60.027 45.833 0.00 0.00 0.00 1.75
15 16 3.859961 CGATTGACAGCGAGAACAGTAAT 59.140 43.478 0.00 0.00 0.00 1.89
16 17 3.242518 CGATTGACAGCGAGAACAGTAA 58.757 45.455 0.00 0.00 0.00 2.24
17 18 2.228103 ACGATTGACAGCGAGAACAGTA 59.772 45.455 6.77 0.00 0.00 2.74
18 19 1.000163 ACGATTGACAGCGAGAACAGT 60.000 47.619 6.77 0.00 0.00 3.55
19 20 1.702886 ACGATTGACAGCGAGAACAG 58.297 50.000 6.77 0.00 0.00 3.16
20 21 2.228103 ACTACGATTGACAGCGAGAACA 59.772 45.455 6.77 0.00 0.00 3.18
21 22 2.864968 ACTACGATTGACAGCGAGAAC 58.135 47.619 6.77 0.00 0.00 3.01
22 23 3.570926 AACTACGATTGACAGCGAGAA 57.429 42.857 6.77 0.00 0.00 2.87
23 24 3.057806 TGAAACTACGATTGACAGCGAGA 60.058 43.478 6.77 0.00 0.00 4.04
24 25 3.242518 TGAAACTACGATTGACAGCGAG 58.757 45.455 6.77 3.43 0.00 5.03
25 26 3.291809 TGAAACTACGATTGACAGCGA 57.708 42.857 6.77 0.00 0.00 4.93
26 27 3.782250 GCATGAAACTACGATTGACAGCG 60.782 47.826 0.00 0.00 0.00 5.18
27 28 3.485877 GGCATGAAACTACGATTGACAGC 60.486 47.826 0.00 0.00 0.00 4.40
28 29 3.063997 GGGCATGAAACTACGATTGACAG 59.936 47.826 0.00 0.00 0.00 3.51
29 30 3.006940 GGGCATGAAACTACGATTGACA 58.993 45.455 0.00 0.00 0.00 3.58
30 31 2.030457 CGGGCATGAAACTACGATTGAC 59.970 50.000 0.00 0.00 0.00 3.18
31 32 2.276201 CGGGCATGAAACTACGATTGA 58.724 47.619 0.00 0.00 0.00 2.57
32 33 2.006888 ACGGGCATGAAACTACGATTG 58.993 47.619 0.00 0.00 0.00 2.67
33 34 2.396590 ACGGGCATGAAACTACGATT 57.603 45.000 0.00 0.00 0.00 3.34
34 35 2.006888 CAACGGGCATGAAACTACGAT 58.993 47.619 0.00 0.00 0.00 3.73
35 36 1.434555 CAACGGGCATGAAACTACGA 58.565 50.000 0.00 0.00 0.00 3.43
36 37 0.179200 GCAACGGGCATGAAACTACG 60.179 55.000 0.00 0.00 43.97 3.51
37 38 3.694889 GCAACGGGCATGAAACTAC 57.305 52.632 0.00 0.00 43.97 2.73
51 52 1.301953 AACGGGGAACTACGGCAAC 60.302 57.895 0.00 0.00 33.58 4.17
52 53 1.301874 CAACGGGGAACTACGGCAA 60.302 57.895 0.00 0.00 33.58 4.52
53 54 2.344500 CAACGGGGAACTACGGCA 59.656 61.111 0.00 0.00 33.58 5.69
54 55 1.739196 GACAACGGGGAACTACGGC 60.739 63.158 0.00 0.00 33.58 5.68
55 56 1.444895 CGACAACGGGGAACTACGG 60.445 63.158 0.00 0.00 35.72 4.02
56 57 1.005294 CACGACAACGGGGAACTACG 61.005 60.000 0.00 0.00 44.46 3.51
57 58 2.818350 CACGACAACGGGGAACTAC 58.182 57.895 0.00 0.00 44.46 2.73
65 66 2.594962 GGCTGTGACACGACAACGG 61.595 63.158 0.22 0.00 44.46 4.44
66 67 2.594962 GGGCTGTGACACGACAACG 61.595 63.158 0.22 0.00 45.75 4.10
67 68 1.222115 GAGGGCTGTGACACGACAAC 61.222 60.000 0.22 0.00 0.00 3.32
68 69 1.069090 GAGGGCTGTGACACGACAA 59.931 57.895 0.22 0.00 0.00 3.18
69 70 2.734591 GAGGGCTGTGACACGACA 59.265 61.111 0.22 0.00 0.00 4.35
70 71 2.416244 TTCGAGGGCTGTGACACGAC 62.416 60.000 0.22 0.00 0.00 4.34
71 72 2.197605 TTCGAGGGCTGTGACACGA 61.198 57.895 0.22 0.00 0.00 4.35
72 73 2.022129 GTTCGAGGGCTGTGACACG 61.022 63.158 0.22 0.00 0.00 4.49
73 74 1.668151 GGTTCGAGGGCTGTGACAC 60.668 63.158 0.00 0.00 0.00 3.67
74 75 1.480212 ATGGTTCGAGGGCTGTGACA 61.480 55.000 0.00 0.00 0.00 3.58
75 76 0.741221 GATGGTTCGAGGGCTGTGAC 60.741 60.000 0.00 0.00 0.00 3.67
76 77 1.596934 GATGGTTCGAGGGCTGTGA 59.403 57.895 0.00 0.00 0.00 3.58
77 78 4.208632 GATGGTTCGAGGGCTGTG 57.791 61.111 0.00 0.00 0.00 3.66
86 87 1.493950 GGAGCTGCATCGATGGTTCG 61.494 60.000 26.00 1.16 46.87 3.95
87 88 0.179062 AGGAGCTGCATCGATGGTTC 60.179 55.000 26.00 16.65 0.00 3.62
88 89 0.179062 GAGGAGCTGCATCGATGGTT 60.179 55.000 26.00 9.02 0.00 3.67
89 90 1.445095 GAGGAGCTGCATCGATGGT 59.555 57.895 26.00 6.58 0.00 3.55
90 91 4.357699 GAGGAGCTGCATCGATGG 57.642 61.111 26.00 12.02 0.00 3.51
118 119 4.477065 ACCAACATGGCCGTTAATACGAC 61.477 47.826 0.00 0.00 45.72 4.34
119 120 2.354906 ACCAACATGGCCGTTAATACGA 60.355 45.455 0.00 0.00 45.72 3.43
120 121 2.011222 ACCAACATGGCCGTTAATACG 58.989 47.619 0.00 0.00 42.67 3.06
121 122 3.765026 CAACCAACATGGCCGTTAATAC 58.235 45.455 0.00 0.00 42.67 1.89
122 123 2.164624 GCAACCAACATGGCCGTTAATA 59.835 45.455 0.00 0.00 42.67 0.98
123 124 1.067213 GCAACCAACATGGCCGTTAAT 60.067 47.619 0.00 0.00 42.67 1.40
124 125 0.315568 GCAACCAACATGGCCGTTAA 59.684 50.000 0.00 0.00 42.67 2.01
125 126 0.823769 TGCAACCAACATGGCCGTTA 60.824 50.000 0.00 0.00 42.67 3.18
126 127 1.680522 TTGCAACCAACATGGCCGTT 61.681 50.000 0.00 0.00 42.67 4.44
127 128 2.130426 TTGCAACCAACATGGCCGT 61.130 52.632 0.00 0.00 42.67 5.68
128 129 2.733301 TTGCAACCAACATGGCCG 59.267 55.556 0.00 0.00 42.67 6.13
135 136 2.851824 CAGAAGAAACGTTGCAACCAAC 59.148 45.455 23.42 12.27 46.15 3.77
136 137 2.733858 GCAGAAGAAACGTTGCAACCAA 60.734 45.455 23.42 0.00 36.59 3.67
137 138 1.202245 GCAGAAGAAACGTTGCAACCA 60.202 47.619 23.42 0.00 36.59 3.67
138 139 1.477105 GCAGAAGAAACGTTGCAACC 58.523 50.000 23.42 9.60 36.59 3.77
139 140 1.477105 GGCAGAAGAAACGTTGCAAC 58.523 50.000 19.89 19.89 38.27 4.17
140 141 0.028770 CGGCAGAAGAAACGTTGCAA 59.971 50.000 9.44 0.00 38.27 4.08
141 142 0.812014 TCGGCAGAAGAAACGTTGCA 60.812 50.000 9.44 0.00 38.27 4.08
142 143 0.517316 ATCGGCAGAAGAAACGTTGC 59.483 50.000 0.00 0.00 35.87 4.17
143 144 2.574322 CAATCGGCAGAAGAAACGTTG 58.426 47.619 0.00 0.00 0.00 4.10
144 145 1.069227 GCAATCGGCAGAAGAAACGTT 60.069 47.619 0.00 0.00 43.97 3.99
145 146 0.517316 GCAATCGGCAGAAGAAACGT 59.483 50.000 0.00 0.00 43.97 3.99
146 147 3.296516 GCAATCGGCAGAAGAAACG 57.703 52.632 0.00 0.00 43.97 3.60
156 157 0.733909 GACCAAAAGCTGCAATCGGC 60.734 55.000 1.02 0.00 44.91 5.54
157 158 0.597568 TGACCAAAAGCTGCAATCGG 59.402 50.000 1.02 0.00 0.00 4.18
158 159 2.095110 TGATGACCAAAAGCTGCAATCG 60.095 45.455 1.02 0.00 0.00 3.34
159 160 3.248266 GTGATGACCAAAAGCTGCAATC 58.752 45.455 1.02 0.00 0.00 2.67
160 161 2.352030 CGTGATGACCAAAAGCTGCAAT 60.352 45.455 1.02 0.00 0.00 3.56
161 162 1.001487 CGTGATGACCAAAAGCTGCAA 60.001 47.619 1.02 0.00 0.00 4.08
162 163 0.592637 CGTGATGACCAAAAGCTGCA 59.407 50.000 1.02 0.00 0.00 4.41
163 164 0.730494 GCGTGATGACCAAAAGCTGC 60.730 55.000 0.00 0.00 0.00 5.25
164 165 0.453282 CGCGTGATGACCAAAAGCTG 60.453 55.000 0.00 0.00 0.00 4.24
165 166 1.577328 CCGCGTGATGACCAAAAGCT 61.577 55.000 4.92 0.00 0.00 3.74
166 167 1.154225 CCGCGTGATGACCAAAAGC 60.154 57.895 4.92 0.00 0.00 3.51
167 168 1.154225 GCCGCGTGATGACCAAAAG 60.154 57.895 4.92 0.00 0.00 2.27
168 169 1.894282 TGCCGCGTGATGACCAAAA 60.894 52.632 4.92 0.00 0.00 2.44
169 170 2.281139 TGCCGCGTGATGACCAAA 60.281 55.556 4.92 0.00 0.00 3.28
170 171 3.047280 GTGCCGCGTGATGACCAA 61.047 61.111 4.92 0.00 0.00 3.67
203 204 3.605749 ATGGTGTCCCGAGGTTGCG 62.606 63.158 0.00 0.00 0.00 4.85
204 205 2.040544 CATGGTGTCCCGAGGTTGC 61.041 63.158 0.00 0.00 0.00 4.17
205 206 1.377202 CCATGGTGTCCCGAGGTTG 60.377 63.158 2.57 0.00 0.00 3.77
206 207 1.537889 TCCATGGTGTCCCGAGGTT 60.538 57.895 12.58 0.00 0.00 3.50
207 208 2.121832 TCCATGGTGTCCCGAGGT 59.878 61.111 12.58 0.00 0.00 3.85
208 209 2.584608 GTCCATGGTGTCCCGAGG 59.415 66.667 12.58 0.00 0.00 4.63
209 210 2.184322 CGTCCATGGTGTCCCGAG 59.816 66.667 12.58 0.00 0.00 4.63
210 211 3.387091 CCGTCCATGGTGTCCCGA 61.387 66.667 12.58 0.00 0.00 5.14
211 212 4.467084 CCCGTCCATGGTGTCCCG 62.467 72.222 12.58 7.49 0.00 5.14
212 213 3.327404 ACCCGTCCATGGTGTCCC 61.327 66.667 12.58 0.00 33.94 4.46
213 214 2.046314 CACCCGTCCATGGTGTCC 60.046 66.667 12.58 0.00 46.62 4.02
217 218 3.338250 ATGGCACCCGTCCATGGT 61.338 61.111 12.58 0.00 42.39 3.55
220 221 4.820744 GCCATGGCACCCGTCCAT 62.821 66.667 32.08 0.00 44.70 3.41
226 227 1.329171 TTTATGCAGCCATGGCACCC 61.329 55.000 37.18 23.91 45.23 4.61
227 228 0.536260 TTTTATGCAGCCATGGCACC 59.464 50.000 37.18 26.35 45.23 5.01
228 229 2.094078 TCTTTTTATGCAGCCATGGCAC 60.094 45.455 37.18 28.00 45.23 5.01
229 230 2.177734 TCTTTTTATGCAGCCATGGCA 58.822 42.857 37.18 18.81 46.66 4.92
230 231 2.965572 TCTTTTTATGCAGCCATGGC 57.034 45.000 30.12 30.12 42.33 4.40
231 232 3.192466 GCTTCTTTTTATGCAGCCATGG 58.808 45.455 7.63 7.63 32.85 3.66
232 233 3.852286 TGCTTCTTTTTATGCAGCCATG 58.148 40.909 0.00 0.00 32.85 3.66
233 234 4.119442 CTGCTTCTTTTTATGCAGCCAT 57.881 40.909 0.00 0.00 44.72 4.40
234 235 3.581024 CTGCTTCTTTTTATGCAGCCA 57.419 42.857 0.00 0.00 44.72 4.75
238 239 3.253188 ACTTCGCTGCTTCTTTTTATGCA 59.747 39.130 0.00 0.00 0.00 3.96
239 240 3.826466 ACTTCGCTGCTTCTTTTTATGC 58.174 40.909 0.00 0.00 0.00 3.14
240 241 4.406943 GGACTTCGCTGCTTCTTTTTATG 58.593 43.478 0.00 0.00 0.00 1.90
241 242 3.440522 GGGACTTCGCTGCTTCTTTTTAT 59.559 43.478 0.00 0.00 0.00 1.40
242 243 2.812011 GGGACTTCGCTGCTTCTTTTTA 59.188 45.455 0.00 0.00 0.00 1.52
243 244 1.609072 GGGACTTCGCTGCTTCTTTTT 59.391 47.619 0.00 0.00 0.00 1.94
244 245 1.239347 GGGACTTCGCTGCTTCTTTT 58.761 50.000 0.00 0.00 0.00 2.27
245 246 0.108585 TGGGACTTCGCTGCTTCTTT 59.891 50.000 0.00 0.00 0.00 2.52
246 247 0.603975 GTGGGACTTCGCTGCTTCTT 60.604 55.000 0.00 0.00 0.00 2.52
247 248 1.004440 GTGGGACTTCGCTGCTTCT 60.004 57.895 0.00 0.00 0.00 2.85
248 249 0.674895 ATGTGGGACTTCGCTGCTTC 60.675 55.000 0.00 0.00 0.00 3.86
249 250 0.674895 GATGTGGGACTTCGCTGCTT 60.675 55.000 0.00 0.00 0.00 3.91
250 251 1.078848 GATGTGGGACTTCGCTGCT 60.079 57.895 0.00 0.00 0.00 4.24
251 252 2.456119 CGATGTGGGACTTCGCTGC 61.456 63.158 0.00 0.00 38.57 5.25
252 253 3.786101 CGATGTGGGACTTCGCTG 58.214 61.111 0.00 0.00 38.57 5.18
255 256 2.456119 GCAGCGATGTGGGACTTCG 61.456 63.158 1.22 7.45 45.09 3.79
256 257 2.109126 GGCAGCGATGTGGGACTTC 61.109 63.158 1.22 0.00 0.00 3.01
257 258 2.045926 GGCAGCGATGTGGGACTT 60.046 61.111 1.22 0.00 0.00 3.01
258 259 4.457496 CGGCAGCGATGTGGGACT 62.457 66.667 1.22 0.00 0.00 3.85
274 275 4.379243 AACTGGGAGCTGCGACCG 62.379 66.667 0.00 8.02 0.00 4.79
275 276 2.743928 CAACTGGGAGCTGCGACC 60.744 66.667 0.00 8.43 0.00 4.79
276 277 1.739562 CTCAACTGGGAGCTGCGAC 60.740 63.158 0.00 0.00 0.00 5.19
277 278 2.659016 CTCAACTGGGAGCTGCGA 59.341 61.111 0.00 0.00 0.00 5.10
283 284 1.739562 GACGCTGCTCAACTGGGAG 60.740 63.158 0.00 0.00 37.97 4.30
284 285 2.343758 GACGCTGCTCAACTGGGA 59.656 61.111 0.00 0.00 34.70 4.37
285 286 3.114616 CGACGCTGCTCAACTGGG 61.115 66.667 0.00 0.00 36.40 4.45
286 287 2.049156 TCGACGCTGCTCAACTGG 60.049 61.111 0.00 0.00 0.00 4.00
287 288 1.340657 GAGTCGACGCTGCTCAACTG 61.341 60.000 12.41 0.00 0.00 3.16
288 289 1.081108 GAGTCGACGCTGCTCAACT 60.081 57.895 12.41 0.00 0.00 3.16
289 290 2.429351 CGAGTCGACGCTGCTCAAC 61.429 63.158 17.32 0.00 0.00 3.18
290 291 2.126850 CGAGTCGACGCTGCTCAA 60.127 61.111 17.32 0.00 0.00 3.02
298 299 2.502080 GACAGTGGCGAGTCGACG 60.502 66.667 18.61 3.03 37.93 5.12
302 303 1.664965 AAAGCGACAGTGGCGAGTC 60.665 57.895 25.75 4.07 35.00 3.36
303 304 1.956170 CAAAGCGACAGTGGCGAGT 60.956 57.895 25.75 4.93 35.00 4.18
304 305 2.856032 CAAAGCGACAGTGGCGAG 59.144 61.111 25.75 4.17 35.00 5.03
305 306 3.345808 GCAAAGCGACAGTGGCGA 61.346 61.111 25.75 0.00 35.00 5.54
306 307 3.648982 TGCAAAGCGACAGTGGCG 61.649 61.111 15.86 15.86 35.00 5.69
307 308 2.050985 GTGCAAAGCGACAGTGGC 60.051 61.111 0.00 0.00 0.00 5.01
308 309 2.249309 CGTGCAAAGCGACAGTGG 59.751 61.111 0.00 0.00 0.00 4.00
309 310 2.047151 AACCGTGCAAAGCGACAGTG 62.047 55.000 0.00 0.00 0.00 3.66
310 311 1.772063 GAACCGTGCAAAGCGACAGT 61.772 55.000 0.00 0.00 0.00 3.55
311 312 1.082756 GAACCGTGCAAAGCGACAG 60.083 57.895 0.00 0.00 0.00 3.51
312 313 2.539338 GGAACCGTGCAAAGCGACA 61.539 57.895 0.00 0.00 0.00 4.35
313 314 2.054140 TTGGAACCGTGCAAAGCGAC 62.054 55.000 0.00 0.00 31.30 5.19
314 315 1.820056 TTGGAACCGTGCAAAGCGA 60.820 52.632 0.00 0.00 31.30 4.93
315 316 1.657181 GTTGGAACCGTGCAAAGCG 60.657 57.895 0.00 0.00 36.77 4.68
316 317 0.031994 ATGTTGGAACCGTGCAAAGC 59.968 50.000 0.00 0.00 36.77 3.51
317 318 1.608590 AGATGTTGGAACCGTGCAAAG 59.391 47.619 0.00 0.00 36.77 2.77
318 319 1.606668 GAGATGTTGGAACCGTGCAAA 59.393 47.619 0.00 0.00 36.77 3.68
319 320 1.234821 GAGATGTTGGAACCGTGCAA 58.765 50.000 0.00 0.00 31.86 4.08
320 321 0.107643 TGAGATGTTGGAACCGTGCA 59.892 50.000 0.00 0.00 0.00 4.57
321 322 0.798776 CTGAGATGTTGGAACCGTGC 59.201 55.000 0.00 0.00 0.00 5.34
322 323 2.455674 TCTGAGATGTTGGAACCGTG 57.544 50.000 0.00 0.00 0.00 4.94
323 324 2.632996 TCTTCTGAGATGTTGGAACCGT 59.367 45.455 0.00 0.00 0.00 4.83
324 325 2.996621 GTCTTCTGAGATGTTGGAACCG 59.003 50.000 0.00 0.00 33.70 4.44
325 326 3.339141 GGTCTTCTGAGATGTTGGAACC 58.661 50.000 0.00 0.00 33.70 3.62
326 327 2.996621 CGGTCTTCTGAGATGTTGGAAC 59.003 50.000 0.00 0.00 33.70 3.62
327 328 2.028112 CCGGTCTTCTGAGATGTTGGAA 60.028 50.000 0.00 0.00 33.70 3.53
328 329 1.550524 CCGGTCTTCTGAGATGTTGGA 59.449 52.381 0.00 0.00 33.70 3.53
329 330 1.276421 ACCGGTCTTCTGAGATGTTGG 59.724 52.381 0.00 0.00 33.70 3.77
330 331 2.751166 ACCGGTCTTCTGAGATGTTG 57.249 50.000 0.00 0.00 33.70 3.33
331 332 3.071023 TGAAACCGGTCTTCTGAGATGTT 59.929 43.478 21.90 5.49 33.70 2.71
332 333 2.632996 TGAAACCGGTCTTCTGAGATGT 59.367 45.455 21.90 0.00 33.70 3.06
333 334 3.257393 CTGAAACCGGTCTTCTGAGATG 58.743 50.000 21.90 0.00 33.70 2.90
334 335 2.354203 GCTGAAACCGGTCTTCTGAGAT 60.354 50.000 25.69 2.91 33.70 2.75
335 336 1.000955 GCTGAAACCGGTCTTCTGAGA 59.999 52.381 25.69 11.10 0.00 3.27
336 337 1.270305 TGCTGAAACCGGTCTTCTGAG 60.270 52.381 25.69 18.11 0.00 3.35
337 338 0.756294 TGCTGAAACCGGTCTTCTGA 59.244 50.000 25.69 15.31 0.00 3.27
338 339 1.151668 CTGCTGAAACCGGTCTTCTG 58.848 55.000 21.90 21.51 0.00 3.02
339 340 0.759346 ACTGCTGAAACCGGTCTTCT 59.241 50.000 21.90 1.36 0.00 2.85
340 341 0.868406 CACTGCTGAAACCGGTCTTC 59.132 55.000 8.04 14.51 0.00 2.87
341 342 0.468226 TCACTGCTGAAACCGGTCTT 59.532 50.000 8.04 4.40 0.00 3.01
342 343 0.249911 GTCACTGCTGAAACCGGTCT 60.250 55.000 8.04 0.00 0.00 3.85
343 344 1.557443 CGTCACTGCTGAAACCGGTC 61.557 60.000 8.04 0.00 0.00 4.79
344 345 1.594293 CGTCACTGCTGAAACCGGT 60.594 57.895 0.00 0.00 0.00 5.28
345 346 0.670546 ATCGTCACTGCTGAAACCGG 60.671 55.000 0.00 0.00 0.00 5.28
346 347 1.136252 CAATCGTCACTGCTGAAACCG 60.136 52.381 0.00 0.00 0.00 4.44
347 348 1.400242 GCAATCGTCACTGCTGAAACC 60.400 52.381 0.00 0.00 35.62 3.27
348 349 1.532868 AGCAATCGTCACTGCTGAAAC 59.467 47.619 0.00 0.00 46.97 2.78
349 350 1.882912 AGCAATCGTCACTGCTGAAA 58.117 45.000 0.00 0.00 46.97 2.69
350 351 3.612517 AGCAATCGTCACTGCTGAA 57.387 47.368 0.00 0.00 46.97 3.02
354 355 0.166814 GAACCAGCAATCGTCACTGC 59.833 55.000 0.00 0.00 38.91 4.40
355 356 0.798776 GGAACCAGCAATCGTCACTG 59.201 55.000 0.00 0.00 0.00 3.66
356 357 0.396435 TGGAACCAGCAATCGTCACT 59.604 50.000 0.00 0.00 0.00 3.41
357 358 0.798776 CTGGAACCAGCAATCGTCAC 59.201 55.000 7.95 0.00 37.24 3.67
358 359 3.231734 CTGGAACCAGCAATCGTCA 57.768 52.632 7.95 0.00 37.24 4.35
367 368 2.401766 GCGTGGATGCTGGAACCAG 61.402 63.158 15.64 15.64 46.15 4.00
368 369 2.359850 GCGTGGATGCTGGAACCA 60.360 61.111 0.00 0.00 0.00 3.67
369 370 2.359850 TGCGTGGATGCTGGAACC 60.360 61.111 0.00 0.00 35.36 3.62
370 371 2.690778 GGTGCGTGGATGCTGGAAC 61.691 63.158 0.00 0.00 35.36 3.62
371 372 2.359850 GGTGCGTGGATGCTGGAA 60.360 61.111 0.00 0.00 35.36 3.53
372 373 3.610619 CTGGTGCGTGGATGCTGGA 62.611 63.158 0.00 0.00 35.36 3.86
373 374 3.129502 CTGGTGCGTGGATGCTGG 61.130 66.667 0.00 0.00 35.36 4.85
374 375 3.807538 GCTGGTGCGTGGATGCTG 61.808 66.667 0.00 0.00 35.36 4.41
393 394 4.400961 AGCTGGAAGGCTGCGACC 62.401 66.667 0.00 0.00 41.43 4.79
394 395 2.817396 GAGCTGGAAGGCTGCGAC 60.817 66.667 0.00 0.00 43.20 5.19
395 396 4.087892 GGAGCTGGAAGGCTGCGA 62.088 66.667 0.00 0.00 43.20 5.10
398 399 3.259633 AACCGGAGCTGGAAGGCTG 62.260 63.158 9.46 0.00 43.20 4.85
399 400 2.930562 AACCGGAGCTGGAAGGCT 60.931 61.111 9.46 0.00 46.11 4.58
400 401 2.543067 ATCAACCGGAGCTGGAAGGC 62.543 60.000 9.46 0.00 0.00 4.35
401 402 0.830648 TATCAACCGGAGCTGGAAGG 59.169 55.000 9.46 0.00 0.00 3.46
402 403 2.691409 TTATCAACCGGAGCTGGAAG 57.309 50.000 9.46 0.00 0.00 3.46
403 404 3.644966 ATTTATCAACCGGAGCTGGAA 57.355 42.857 9.46 0.00 0.00 3.53
404 405 4.974645 ATATTTATCAACCGGAGCTGGA 57.025 40.909 9.46 0.00 0.00 3.86
405 406 5.046591 TCCTATATTTATCAACCGGAGCTGG 60.047 44.000 9.46 0.00 0.00 4.85
406 407 6.037786 TCCTATATTTATCAACCGGAGCTG 57.962 41.667 9.46 1.96 0.00 4.24
407 408 6.465084 GTTCCTATATTTATCAACCGGAGCT 58.535 40.000 9.46 0.00 0.00 4.09
408 409 5.347907 CGTTCCTATATTTATCAACCGGAGC 59.652 44.000 9.46 0.00 0.00 4.70
409 410 5.347907 GCGTTCCTATATTTATCAACCGGAG 59.652 44.000 9.46 0.00 0.00 4.63
410 411 5.221481 TGCGTTCCTATATTTATCAACCGGA 60.221 40.000 9.46 0.00 0.00 5.14
411 412 4.992319 TGCGTTCCTATATTTATCAACCGG 59.008 41.667 0.00 0.00 0.00 5.28
412 413 6.533819 TTGCGTTCCTATATTTATCAACCG 57.466 37.500 0.00 0.00 0.00 4.44
413 414 6.017440 TGCTTGCGTTCCTATATTTATCAACC 60.017 38.462 0.00 0.00 0.00 3.77
414 415 6.954944 TGCTTGCGTTCCTATATTTATCAAC 58.045 36.000 0.00 0.00 0.00 3.18
415 416 7.744087 ATGCTTGCGTTCCTATATTTATCAA 57.256 32.000 0.00 0.00 0.00 2.57
416 417 7.549134 CCTATGCTTGCGTTCCTATATTTATCA 59.451 37.037 0.00 0.00 0.00 2.15
417 418 7.011482 CCCTATGCTTGCGTTCCTATATTTATC 59.989 40.741 0.00 0.00 0.00 1.75
418 419 6.823689 CCCTATGCTTGCGTTCCTATATTTAT 59.176 38.462 0.00 0.00 0.00 1.40
419 420 6.014070 TCCCTATGCTTGCGTTCCTATATTTA 60.014 38.462 0.00 0.00 0.00 1.40
420 421 5.003804 CCCTATGCTTGCGTTCCTATATTT 58.996 41.667 0.00 0.00 0.00 1.40
421 422 4.286032 TCCCTATGCTTGCGTTCCTATATT 59.714 41.667 0.00 0.00 0.00 1.28
422 423 3.838317 TCCCTATGCTTGCGTTCCTATAT 59.162 43.478 0.00 0.00 0.00 0.86
423 424 3.236047 TCCCTATGCTTGCGTTCCTATA 58.764 45.455 0.00 0.00 0.00 1.31
424 425 2.047061 TCCCTATGCTTGCGTTCCTAT 58.953 47.619 0.00 0.00 0.00 2.57
425 426 1.491668 TCCCTATGCTTGCGTTCCTA 58.508 50.000 0.00 0.00 0.00 2.94
426 427 0.839946 ATCCCTATGCTTGCGTTCCT 59.160 50.000 0.00 0.00 0.00 3.36
427 428 0.947244 CATCCCTATGCTTGCGTTCC 59.053 55.000 0.00 0.00 0.00 3.62
428 429 1.953559 TCATCCCTATGCTTGCGTTC 58.046 50.000 0.00 0.00 32.76 3.95
429 430 2.418368 TTCATCCCTATGCTTGCGTT 57.582 45.000 0.00 0.00 32.76 4.84
430 431 2.224606 CATTCATCCCTATGCTTGCGT 58.775 47.619 0.00 0.00 32.76 5.24
431 432 2.224606 ACATTCATCCCTATGCTTGCG 58.775 47.619 0.00 0.00 32.76 4.85
432 433 6.459298 GCATATACATTCATCCCTATGCTTGC 60.459 42.308 0.00 0.00 38.76 4.01
433 434 6.600427 TGCATATACATTCATCCCTATGCTTG 59.400 38.462 12.06 0.00 41.11 4.01
434 435 6.724351 TGCATATACATTCATCCCTATGCTT 58.276 36.000 12.06 0.00 41.11 3.91
435 436 6.317663 TGCATATACATTCATCCCTATGCT 57.682 37.500 12.06 0.00 41.11 3.79
436 437 6.514541 GCATGCATATACATTCATCCCTATGC 60.515 42.308 14.21 5.61 40.98 3.14
437 438 6.544564 TGCATGCATATACATTCATCCCTATG 59.455 38.462 18.46 0.00 0.00 2.23
438 439 6.665695 TGCATGCATATACATTCATCCCTAT 58.334 36.000 18.46 0.00 0.00 2.57
439 440 6.064735 TGCATGCATATACATTCATCCCTA 57.935 37.500 18.46 0.00 0.00 3.53
440 441 4.925836 TGCATGCATATACATTCATCCCT 58.074 39.130 18.46 0.00 0.00 4.20
441 442 5.126545 ACATGCATGCATATACATTCATCCC 59.873 40.000 31.73 0.00 32.58 3.85
442 443 6.033966 CACATGCATGCATATACATTCATCC 58.966 40.000 31.73 0.00 32.58 3.51
443 444 6.848451 TCACATGCATGCATATACATTCATC 58.152 36.000 31.73 0.00 32.58 2.92
444 445 6.625081 GCTCACATGCATGCATATACATTCAT 60.625 38.462 31.73 4.96 34.78 2.57
445 446 5.335348 GCTCACATGCATGCATATACATTCA 60.335 40.000 31.73 9.82 34.91 2.57
446 447 5.093457 GCTCACATGCATGCATATACATTC 58.907 41.667 31.73 14.20 34.91 2.67
447 448 4.379082 CGCTCACATGCATGCATATACATT 60.379 41.667 31.73 7.43 34.91 2.71
448 449 3.126343 CGCTCACATGCATGCATATACAT 59.874 43.478 31.73 8.26 34.91 2.29
449 450 2.481185 CGCTCACATGCATGCATATACA 59.519 45.455 31.73 15.23 34.91 2.29
450 451 2.481568 ACGCTCACATGCATGCATATAC 59.518 45.455 31.73 17.95 34.91 1.47
451 452 2.738314 GACGCTCACATGCATGCATATA 59.262 45.455 31.73 18.50 34.91 0.86
452 453 1.534163 GACGCTCACATGCATGCATAT 59.466 47.619 31.73 20.24 34.91 1.78
453 454 0.939419 GACGCTCACATGCATGCATA 59.061 50.000 31.73 16.54 34.91 3.14
454 455 0.746923 AGACGCTCACATGCATGCAT 60.747 50.000 27.46 27.46 37.08 3.96
455 456 1.376295 AGACGCTCACATGCATGCA 60.376 52.632 26.53 25.04 0.00 3.96
456 457 1.062047 CAGACGCTCACATGCATGC 59.938 57.895 26.53 11.82 0.00 4.06
457 458 1.062047 GCAGACGCTCACATGCATG 59.938 57.895 25.09 25.09 38.54 4.06
458 459 1.376295 TGCAGACGCTCACATGCAT 60.376 52.632 0.00 0.00 43.34 3.96
459 460 2.030862 TGCAGACGCTCACATGCA 59.969 55.556 0.00 0.00 45.82 3.96
460 461 1.062047 CATGCAGACGCTCACATGC 59.938 57.895 0.00 0.00 39.64 4.06
461 462 0.096454 CACATGCAGACGCTCACATG 59.904 55.000 13.24 13.24 44.29 3.21
462 463 0.321034 ACACATGCAGACGCTCACAT 60.321 50.000 0.00 0.00 39.64 3.21
463 464 1.069596 ACACATGCAGACGCTCACA 59.930 52.632 0.00 0.00 39.64 3.58
464 465 1.224069 ACACACATGCAGACGCTCAC 61.224 55.000 0.00 0.00 39.64 3.51
465 466 0.316841 TACACACATGCAGACGCTCA 59.683 50.000 0.00 0.00 39.64 4.26
466 467 0.716108 GTACACACATGCAGACGCTC 59.284 55.000 0.00 0.00 39.64 5.03
467 468 0.318441 AGTACACACATGCAGACGCT 59.682 50.000 0.00 0.00 39.64 5.07
468 469 0.716108 GAGTACACACATGCAGACGC 59.284 55.000 0.00 0.00 39.24 5.19
469 470 1.350193 GGAGTACACACATGCAGACG 58.650 55.000 0.00 0.00 0.00 4.18
470 471 1.276421 AGGGAGTACACACATGCAGAC 59.724 52.381 0.00 0.00 0.00 3.51
471 472 1.550524 GAGGGAGTACACACATGCAGA 59.449 52.381 0.00 0.00 0.00 4.26
472 473 1.552337 AGAGGGAGTACACACATGCAG 59.448 52.381 0.00 0.00 0.00 4.41
473 474 1.276138 CAGAGGGAGTACACACATGCA 59.724 52.381 0.00 0.00 0.00 3.96
474 475 1.276421 ACAGAGGGAGTACACACATGC 59.724 52.381 0.00 0.00 0.00 4.06
475 476 3.685139 AACAGAGGGAGTACACACATG 57.315 47.619 0.00 0.00 0.00 3.21
476 477 4.706842 AAAACAGAGGGAGTACACACAT 57.293 40.909 0.00 0.00 0.00 3.21
477 478 4.497291 AAAAACAGAGGGAGTACACACA 57.503 40.909 0.00 0.00 0.00 3.72
478 479 7.506328 AAATAAAAACAGAGGGAGTACACAC 57.494 36.000 0.00 0.00 0.00 3.82
479 480 8.434392 AGTAAATAAAAACAGAGGGAGTACACA 58.566 33.333 0.00 0.00 0.00 3.72
480 481 8.843885 AGTAAATAAAAACAGAGGGAGTACAC 57.156 34.615 0.00 0.00 0.00 2.90
481 482 8.877195 AGAGTAAATAAAAACAGAGGGAGTACA 58.123 33.333 0.00 0.00 0.00 2.90
484 485 8.877195 TGTAGAGTAAATAAAAACAGAGGGAGT 58.123 33.333 0.00 0.00 0.00 3.85
485 486 9.892130 ATGTAGAGTAAATAAAAACAGAGGGAG 57.108 33.333 0.00 0.00 0.00 4.30
486 487 9.667107 CATGTAGAGTAAATAAAAACAGAGGGA 57.333 33.333 0.00 0.00 0.00 4.20
487 488 9.449719 ACATGTAGAGTAAATAAAAACAGAGGG 57.550 33.333 0.00 0.00 0.00 4.30
508 509 9.683069 GTTTGACTTCATTCAAATCTAACATGT 57.317 29.630 0.00 0.00 45.04 3.21
534 535 9.329913 CTATCAACTTGGTCAAATTTTACGAAG 57.670 33.333 19.61 19.61 37.43 3.79
685 686 9.495572 AGTTTTGGTCAAAATCAAACTTTGTAA 57.504 25.926 11.37 0.00 41.64 2.41
687 688 7.977789 AGTTTTGGTCAAAATCAAACTTTGT 57.022 28.000 11.37 0.00 41.64 2.83
698 699 7.259161 AGTTTGCGTATTAGTTTTGGTCAAAA 58.741 30.769 4.92 4.92 37.90 2.44
720 721 9.503399 CAGTACTCCCTCTGTTTTTATTTAGTT 57.497 33.333 0.00 0.00 0.00 2.24
808 811 4.655963 TCCAGGTTCAATTCCTTCTTCTG 58.344 43.478 0.00 0.00 32.37 3.02
868 881 0.883833 AGCTTTCCACCGAATTGCTG 59.116 50.000 0.00 0.00 37.03 4.41
971 988 3.345808 GACGCGCTGTTGCTGGAA 61.346 61.111 5.73 0.00 36.97 3.53
987 1004 2.300967 GGCCATGGTGGTGAGAGGA 61.301 63.158 14.67 0.00 40.46 3.71
991 1008 2.753043 GCAGGCCATGGTGGTGAG 60.753 66.667 14.67 0.00 40.46 3.51
1051 1078 3.244044 CCGAAACCATGGGAAAAACACAT 60.244 43.478 18.09 0.00 44.28 3.21
1109 1145 8.190784 TGTGGCATATATAGTCGTATCAATCTG 58.809 37.037 0.00 0.00 0.00 2.90
1120 1156 6.591834 GTCAATCTGGTGTGGCATATATAGTC 59.408 42.308 0.00 0.00 0.00 2.59
1121 1157 6.270927 AGTCAATCTGGTGTGGCATATATAGT 59.729 38.462 0.00 0.00 0.00 2.12
1123 1159 6.295859 GGAGTCAATCTGGTGTGGCATATATA 60.296 42.308 0.00 0.00 0.00 0.86
1124 1160 5.513788 GGAGTCAATCTGGTGTGGCATATAT 60.514 44.000 0.00 0.00 0.00 0.86
1173 1209 1.947013 CAGCCTGTGACACAAGCAG 59.053 57.895 26.66 17.50 37.99 4.24
1205 1241 1.134401 ACGTGTGCCCATCTATCCTTG 60.134 52.381 0.00 0.00 0.00 3.61
1216 1252 2.031919 TGTGGATCACGTGTGCCC 59.968 61.111 16.51 14.86 37.14 5.36
1230 1266 0.685097 TCCCGGGAAGAAGAAGTGTG 59.315 55.000 24.50 0.00 0.00 3.82
1241 1277 4.344865 GCAGCAGGTTCCCGGGAA 62.345 66.667 32.53 32.53 0.00 3.97
1260 1296 0.657840 CCTGTGCTAATAGTTGCGGC 59.342 55.000 0.00 0.00 0.00 6.53
1262 1298 4.119862 ACATACCTGTGCTAATAGTTGCG 58.880 43.478 0.00 0.00 33.22 4.85
1290 1326 6.481976 CCGAAAACAGGCTCATATACATTACA 59.518 38.462 0.00 0.00 0.00 2.41
1291 1327 6.482308 ACCGAAAACAGGCTCATATACATTAC 59.518 38.462 0.00 0.00 0.00 1.89
1292 1328 6.588204 ACCGAAAACAGGCTCATATACATTA 58.412 36.000 0.00 0.00 0.00 1.90
1293 1329 5.437060 ACCGAAAACAGGCTCATATACATT 58.563 37.500 0.00 0.00 0.00 2.71
1294 1330 5.036117 ACCGAAAACAGGCTCATATACAT 57.964 39.130 0.00 0.00 0.00 2.29
1295 1331 4.081365 TGACCGAAAACAGGCTCATATACA 60.081 41.667 0.00 0.00 0.00 2.29
1296 1332 4.439057 TGACCGAAAACAGGCTCATATAC 58.561 43.478 0.00 0.00 0.00 1.47
1297 1333 4.746535 TGACCGAAAACAGGCTCATATA 57.253 40.909 0.00 0.00 0.00 0.86
1298 1334 3.627395 TGACCGAAAACAGGCTCATAT 57.373 42.857 0.00 0.00 0.00 1.78
1299 1335 3.627395 ATGACCGAAAACAGGCTCATA 57.373 42.857 0.00 0.00 32.11 2.15
1300 1336 2.496899 ATGACCGAAAACAGGCTCAT 57.503 45.000 0.00 0.00 0.00 2.90
1301 1337 2.037902 TGTATGACCGAAAACAGGCTCA 59.962 45.455 0.00 0.00 0.00 4.26
1302 1338 2.695359 TGTATGACCGAAAACAGGCTC 58.305 47.619 0.00 0.00 0.00 4.70
1327 1363 7.931275 ACAGTCAAAAATCAAAGAGGTCTAAC 58.069 34.615 0.00 0.00 0.00 2.34
1328 1367 8.405531 CAACAGTCAAAAATCAAAGAGGTCTAA 58.594 33.333 0.00 0.00 0.00 2.10
1388 1427 2.629051 AGGACGCTACCTGCATTAAAC 58.371 47.619 0.00 0.00 43.06 2.01
1389 1428 3.343941 AAGGACGCTACCTGCATTAAA 57.656 42.857 0.00 0.00 43.06 1.52
1390 1429 3.740141 GCTAAGGACGCTACCTGCATTAA 60.740 47.826 0.00 0.00 43.06 1.40
1391 1430 2.223971 GCTAAGGACGCTACCTGCATTA 60.224 50.000 0.00 0.00 43.06 1.90
1482 1521 4.582656 TCTCTCTGGATTAGTGCTAGAAGC 59.417 45.833 0.00 0.00 42.82 3.86
1494 1533 2.027377 CCTGCACAACTCTCTCTGGATT 60.027 50.000 0.00 0.00 0.00 3.01
1578 1619 1.726853 CTACCTCGAGCTTGGGTTTG 58.273 55.000 16.53 8.74 34.86 2.93
1667 1709 2.429250 TCCACACGAAGAAGACAAGTCA 59.571 45.455 2.72 0.00 0.00 3.41
1730 1772 1.130054 TGCTGAACTGGCCTTCCTCT 61.130 55.000 3.32 0.00 0.00 3.69
1734 1776 0.250901 TCCTTGCTGAACTGGCCTTC 60.251 55.000 3.32 0.02 0.00 3.46
1774 1816 1.059098 AAGGCCAGTGACTGTGATGA 58.941 50.000 12.15 0.00 0.00 2.92
1779 1821 2.639839 AGATTACAAGGCCAGTGACTGT 59.360 45.455 12.15 0.50 0.00 3.55
1805 1847 0.108186 TGTCAAGCCTAGTCATGCCG 60.108 55.000 0.00 0.00 0.00 5.69
1843 1885 6.487828 TCTTCATCTTCTTCCAAACCATCAT 58.512 36.000 0.00 0.00 0.00 2.45
1869 1911 0.459899 TGAAGATCATCGGGGTCACG 59.540 55.000 0.00 0.00 0.00 4.35
1887 1929 3.686241 TCATGGTCGCAATCTTCTTCTTG 59.314 43.478 0.00 0.00 0.00 3.02
1925 1985 6.423001 CGCTGTCATAATCTTCATCATCTTCA 59.577 38.462 0.00 0.00 0.00 3.02
1934 1994 6.282930 TGAATCATCGCTGTCATAATCTTCA 58.717 36.000 0.00 0.00 0.00 3.02
1942 2002 4.370049 CTCTTCTGAATCATCGCTGTCAT 58.630 43.478 0.00 0.00 0.00 3.06
1957 2017 4.081531 AGTCATGCTCTTCTTCCTCTTCTG 60.082 45.833 0.00 0.00 0.00 3.02
2031 2099 0.958091 TCACTGAATTTTGTGCCCGG 59.042 50.000 0.00 0.00 34.49 5.73
2322 2404 1.599518 ACGCAAAGAATGGGACGCA 60.600 52.632 0.00 0.00 44.39 5.24
2492 2576 2.039818 TCACGGTTTGCCTGTAACAA 57.960 45.000 0.00 0.00 0.00 2.83
2496 2580 0.180642 TGGTTCACGGTTTGCCTGTA 59.819 50.000 0.00 0.00 0.00 2.74
2564 2648 1.022451 GGAAGTTGGTTGCCGCGATA 61.022 55.000 8.23 0.00 0.00 2.92
2585 2669 3.274288 GAGGGCTTTATCAAGTGACTGG 58.726 50.000 0.00 0.00 31.86 4.00
2624 2709 1.743394 GGGACATGAATTTGACGGTCC 59.257 52.381 5.55 0.00 43.10 4.46
2672 2757 5.808366 TTGACATATAAGCCTCGAGGATT 57.192 39.130 34.94 34.94 46.76 3.01
2882 3047 2.056223 CCCATCCTTGGCTGCCTTG 61.056 63.158 21.03 11.99 42.15 3.61
2883 3048 2.361771 CCCATCCTTGGCTGCCTT 59.638 61.111 21.03 0.00 42.15 4.35
2884 3049 3.747579 CCCCATCCTTGGCTGCCT 61.748 66.667 21.03 0.00 42.15 4.75
2889 3054 4.440829 TTCCGCCCCATCCTTGGC 62.441 66.667 0.00 0.00 42.15 4.52
2890 3055 2.124151 CTTCCGCCCCATCCTTGG 60.124 66.667 0.00 0.00 43.23 3.61
3363 3549 3.414193 CTGCAGCCCCCTCATGGA 61.414 66.667 0.00 0.00 35.39 3.41
3408 3615 3.609853 TGTAAGCCTTGTCCAATAGCTG 58.390 45.455 0.00 0.00 32.38 4.24
3564 3777 2.548057 GCGTTTCCTGATTCTGTTGACA 59.452 45.455 0.00 0.00 0.00 3.58
3653 3866 2.895404 AGCATTCTCACAAAAGCCATGT 59.105 40.909 0.00 0.00 0.00 3.21
3723 3936 5.423015 GTGCTTTCATGTCTCTAAGATCCA 58.577 41.667 0.00 0.00 0.00 3.41
3739 3952 3.951663 ACTAGTATGTTGGGGTGCTTTC 58.048 45.455 0.00 0.00 0.00 2.62
3744 3957 6.954684 AGATATCCTACTAGTATGTTGGGGTG 59.045 42.308 2.33 0.00 34.44 4.61
3756 3969 6.000840 TGCTCAGTCACAGATATCCTACTAG 58.999 44.000 0.00 0.00 0.00 2.57
3787 4000 6.039616 GTGTTGCCACTGAAACTTCATTTAA 58.960 36.000 0.00 0.00 38.61 1.52
3839 4052 7.552687 ACAGGGTATAGTTACAAACACATGATG 59.447 37.037 0.00 0.00 0.00 3.07
3860 4073 1.375523 GCTGACGTGGGTAACAGGG 60.376 63.158 0.00 0.00 39.23 4.45
3865 4078 1.689813 TGAAGAAGCTGACGTGGGTAA 59.310 47.619 0.00 0.00 0.00 2.85
3891 4104 7.807977 TGGAAGCATTCTCTGGAATTATAAC 57.192 36.000 0.00 0.00 46.56 1.89
4022 4235 8.460428 AGTTTTCGGTACAAATTTGTAAAGTGA 58.540 29.630 28.05 20.13 44.46 3.41
4100 4315 2.912345 GCGCGTTTAAAATGGACGAAAT 59.088 40.909 8.43 0.00 38.99 2.17
4215 4434 4.724602 GCCACTGACGAGCTCGCA 62.725 66.667 34.83 28.86 44.43 5.10
4254 4473 4.790962 CCACTGCCGCATGCCTCT 62.791 66.667 13.15 0.00 40.16 3.69
4304 4523 3.850098 CTTGCTTCCGCCACCACCT 62.850 63.158 0.00 0.00 34.43 4.00
4306 4525 4.043200 GCTTGCTTCCGCCACCAC 62.043 66.667 0.00 0.00 34.43 4.16
4307 4526 4.577677 TGCTTGCTTCCGCCACCA 62.578 61.111 0.00 0.00 34.43 4.17
4413 4634 1.429825 CTAGCTAGCTCACGCACGT 59.570 57.895 23.26 0.00 39.10 4.49


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.